BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00011943
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531290.1| protein with unknown function [Ricinus commu...   501   e-140
ref|XP_002882372.1| hypothetical protein ARALYDRAFT_477743 [Arab...   498   e-139
ref|NP_187125.1| RNA polymerase II transcription mediator [Arabi...   497   e-138
ref|XP_004171233.1| PREDICTED: mediator of RNA polymerase II tra...   497   e-138
ref|XP_004139381.1| PREDICTED: mediator of RNA polymerase II tra...   497   e-138

>ref|XP_002531290.1| protein with unknown function [Ricinus communis]
            gi|223529123|gb|EEF31103.1| protein with unknown function
            [Ricinus communis]
          Length = 1746

 Score =  501 bits (1291), Expect = e-140
 Identities = 256/320 (80%), Positives = 272/320 (85%), Gaps = 4/320 (1%)
 Frame = -3

Query: 965  LKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKESEGKLLNLDQEQPALRFFVGGYVFA 786
            LKKVLRGILKYLGVLWLFAQLPDLLKEIL SILK++EG LLNLDQEQPALRFFVGGYVFA
Sbjct: 1426 LKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFA 1485

Query: 785  VSVHRVQLLLQVLSVKRFHHXXXXXXXXXXQ---EELAHGEISEICDYFSRRVASEPYDA 615
            VSVHRVQLLLQVLSVKRFHH              EEL   EI+EICDYFSRRVASEPYDA
Sbjct: 1486 VSVHRVQLLLQVLSVKRFHHQQQQQQQQNSVTSQEELIQSEIAEICDYFSRRVASEPYDA 1545

Query: 614  SRVASFITLLTLPISVLREFLKLIAWKKGLSQVQGGESTPSQKPRIELCLENHSGTPIDG 435
            SRVASFITLLTLPISVLREFLKLIAWKKG++QVQGGE  P QKPRIELCLENH+G   + 
Sbjct: 1546 SRVASFITLLTLPISVLREFLKLIAWKKGMTQVQGGEIAPGQKPRIELCLENHAGLSEND 1605

Query: 434  NSDGCPS-KSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGE 258
            NS+   + KSNIHYDRPHNSVDFALTVVLDPA IPH+NAAGGAAWLPYCVSVRLRYSFGE
Sbjct: 1606 NSENSSAAKSNIHYDRPHNSVDFALTVVLDPALIPHVNAAGGAAWLPYCVSVRLRYSFGE 1665

Query: 257  NPRVIFLGMEGSHGGRACWLRPEDWETCKLRVARTVEVNGSMSGDVTQGRLKIVADSVQR 78
            N  V FLGMEGSHGGRACWLR +DWE CK RV RTVEVNGS +GDV QGRL++VADSVQR
Sbjct: 1666 NTNVTFLGMEGSHGGRACWLRIDDWEKCKQRVIRTVEVNGSTTGDVAQGRLRMVADSVQR 1725

Query: 77   TLQLGLQGARDANTVATSGA 18
            TL + LQG RD     +SGA
Sbjct: 1726 TLHMCLQGLRDGGVTGSSGA 1745


>ref|XP_002882372.1| hypothetical protein ARALYDRAFT_477743 [Arabidopsis lyrata subsp.
            lyrata] gi|297328212|gb|EFH58631.1| hypothetical protein
            ARALYDRAFT_477743 [Arabidopsis lyrata subsp. lyrata]
          Length = 1702

 Score =  498 bits (1283), Expect = e-139
 Identities = 253/315 (80%), Positives = 272/315 (86%), Gaps = 2/315 (0%)
 Frame = -3

Query: 965  LKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKESEGKLLNLDQEQPALRFFVGGYVFA 786
            LKKVLRGILKYLGVLWLFAQLPDLL+EIL SILK++EG LLNLDQEQPALRFFVGGYVFA
Sbjct: 1384 LKKVLRGILKYLGVLWLFAQLPDLLREILGSILKDNEGALLNLDQEQPALRFFVGGYVFA 1443

Query: 785  VSVHRVQLLLQVLSVKRFHHXXXXXXXXXXQ-EELAHGEISEICDYFSRRVASEPYDASR 609
            VSVHRVQLLLQVLSV+RFHH            EEL   EI EICDYFSRRVASEPYDASR
Sbjct: 1444 VSVHRVQLLLQVLSVRRFHHQQQQNGSSAAAQEELTQSEIGEICDYFSRRVASEPYDASR 1503

Query: 608  VASFITLLTLPISVLREFLKLIAWKKGLSQVQ-GGESTPSQKPRIELCLENHSGTPIDGN 432
            VASFITLLTLPISVLREFLKLIAWKKGLSQ Q  GE  P+Q+PRIELCLENHSGT +D N
Sbjct: 1504 VASFITLLTLPISVLREFLKLIAWKKGLSQSQQAGEIAPAQRPRIELCLENHSGTDLDNN 1563

Query: 431  SDGCPSKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGENP 252
               C +KSNIHYDRPHN+VDFALTVVLDP HIPHINAAGGAAWLPYCVSVRLRY+FGE+P
Sbjct: 1564 ---CAAKSNIHYDRPHNTVDFALTVVLDPVHIPHINAAGGAAWLPYCVSVRLRYTFGESP 1620

Query: 251  RVIFLGMEGSHGGRACWLRPEDWETCKLRVARTVEVNGSMSGDVTQGRLKIVADSVQRTL 72
             V FLGMEGSHGGRACW R +DWE CK RV+RTVEVNGS +GD+TQG+LK+VADSVQRTL
Sbjct: 1621 SVTFLGMEGSHGGRACWQRVDDWEKCKQRVSRTVEVNGSAAGDLTQGKLKLVADSVQRTL 1680

Query: 71   QLGLQGARDANTVAT 27
             L LQG R+ N+  T
Sbjct: 1681 HLCLQGLREGNSSNT 1695


>ref|NP_187125.1| RNA polymerase II transcription mediator [Arabidopsis thaliana]
            gi|75207288|sp|Q9SR02.1|MED14_ARATH RecName:
            Full=Mediator of RNA polymerase II transcription subunit
            14; AltName: Full=Protein STRUWWELPETER; Short=AtSWP
            gi|6175174|gb|AAF04900.1|AC011437_15 hypothetical protein
            [Arabidopsis thaliana]
            gi|20068999|gb|AAM09647.1|AF466359_1 SWP1 [Arabidopsis
            thaliana] gi|23898273|emb|CAD53582.1| struwwelpeter 1
            protein [Arabidopsis thaliana]
            gi|332640609|gb|AEE74130.1| RNA polymerase II
            transcription mediator [Arabidopsis thaliana]
          Length = 1703

 Score =  497 bits (1280), Expect = e-138
 Identities = 252/309 (81%), Positives = 269/309 (87%), Gaps = 2/309 (0%)
 Frame = -3

Query: 965  LKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKESEGKLLNLDQEQPALRFFVGGYVFA 786
            LKKVLRGILKYLGVLWLFAQLPDLL+EIL SILK++EG LLNLDQEQPALRFFVGGYVFA
Sbjct: 1383 LKKVLRGILKYLGVLWLFAQLPDLLREILGSILKDNEGALLNLDQEQPALRFFVGGYVFA 1442

Query: 785  VSVHRVQLLLQVLSVKRFHHXXXXXXXXXXQ-EELAHGEISEICDYFSRRVASEPYDASR 609
            VSVHRVQLLLQVLSV+RFHH            EEL   EI EICDYFSRRVASEPYDASR
Sbjct: 1443 VSVHRVQLLLQVLSVRRFHHQAQQNGSSAAAQEELTQSEIGEICDYFSRRVASEPYDASR 1502

Query: 608  VASFITLLTLPISVLREFLKLIAWKKGLSQVQ-GGESTPSQKPRIELCLENHSGTPIDGN 432
            VASFITLLTLPISVLREFLKLIAWKKGLSQ Q  GE  P+Q+PRIELCLENHSGT +D N
Sbjct: 1503 VASFITLLTLPISVLREFLKLIAWKKGLSQSQQAGEIAPAQRPRIELCLENHSGTDLDNN 1562

Query: 431  SDGCPSKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGENP 252
               C +KSNIHYDRPHN+VDFALTVVLDP HIPHINAAGGAAWLPYCVSVRLRY+FGENP
Sbjct: 1563 ---CAAKSNIHYDRPHNTVDFALTVVLDPVHIPHINAAGGAAWLPYCVSVRLRYTFGENP 1619

Query: 251  RVIFLGMEGSHGGRACWLRPEDWETCKLRVARTVEVNGSMSGDVTQGRLKIVADSVQRTL 72
             V FLGMEGSHGGRACW R +DWE CK RV+RTVEVNGS +GD+TQG+LK+VADSVQRTL
Sbjct: 1620 SVTFLGMEGSHGGRACWQRVDDWEKCKQRVSRTVEVNGSAAGDLTQGKLKLVADSVQRTL 1679

Query: 71   QLGLQGARD 45
             L LQG R+
Sbjct: 1680 HLCLQGLRE 1688


>ref|XP_004171233.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            14-like, partial [Cucumis sativus]
          Length = 1332

 Score =  497 bits (1279), Expect = e-138
 Identities = 251/316 (79%), Positives = 272/316 (86%), Gaps = 3/316 (0%)
 Frame = -3

Query: 965  LKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKESEGKLLNLDQEQPALRFFVGGYVFA 786
            LKKVLRGILKYLGVLWLFAQLPDLLKEIL SIL+++EG LLNLD EQPALRFFVGGYVFA
Sbjct: 1011 LKKVLRGILKYLGVLWLFAQLPDLLKEILGSILRDNEGALLNLDPEQPALRFFVGGYVFA 1070

Query: 785  VSVHRVQLLLQVLSVKRFHHXXXXXXXXXXQ---EELAHGEISEICDYFSRRVASEPYDA 615
            VSVHRVQLLLQVLSVKRFHH              EEL   EI EICDYFSRRVASEPYDA
Sbjct: 1071 VSVHRVQLLLQVLSVKRFHHQQQQQQQQNSATAQEELTQSEIGEICDYFSRRVASEPYDA 1130

Query: 614  SRVASFITLLTLPISVLREFLKLIAWKKGLSQVQGGESTPSQKPRIELCLENHSGTPIDG 435
            SRVASFITLLTLPISVLREFLKLIAWKKG++Q QGG+  P+QKPRIELCLENHSG   D 
Sbjct: 1131 SRVASFITLLTLPISVLREFLKLIAWKKGVAQAQGGDIAPAQKPRIELCLENHSGLSTDE 1190

Query: 434  NSDGCPSKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGEN 255
            NS+   SKSNIHYDR HNSVDFALTVVLDPAHIPH+NAAGGAAWLPYCVSV+LRYSFGE+
Sbjct: 1191 NSERSTSKSNIHYDRQHNSVDFALTVVLDPAHIPHMNAAGGAAWLPYCVSVKLRYSFGES 1250

Query: 254  PRVIFLGMEGSHGGRACWLRPEDWETCKLRVARTVEVNGSMSGDVTQGRLKIVADSVQRT 75
              V FLGMEGSHGGRACWLR +DWE CK RVARTVEV+GS +GDV+QGRL+IVAD+VQRT
Sbjct: 1251 LVVSFLGMEGSHGGRACWLRVDDWEKCKQRVARTVEVSGSSTGDVSQGRLRIVADNVQRT 1310

Query: 74   LQLGLQGARDANTVAT 27
            L + LQG R+ + +AT
Sbjct: 1311 LHMCLQGLREGSEIAT 1326


>ref|XP_004139381.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            14-like [Cucumis sativus]
          Length = 1800

 Score =  497 bits (1279), Expect = e-138
 Identities = 251/316 (79%), Positives = 272/316 (86%), Gaps = 3/316 (0%)
 Frame = -3

Query: 965  LKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKESEGKLLNLDQEQPALRFFVGGYVFA 786
            LKKVLRGILKYLGVLWLFAQLPDLLKEIL SIL+++EG LLNLD EQPALRFFVGGYVFA
Sbjct: 1479 LKKVLRGILKYLGVLWLFAQLPDLLKEILGSILRDNEGALLNLDPEQPALRFFVGGYVFA 1538

Query: 785  VSVHRVQLLLQVLSVKRFHHXXXXXXXXXXQ---EELAHGEISEICDYFSRRVASEPYDA 615
            VSVHRVQLLLQVLSVKRFHH              EEL   EI EICDYFSRRVASEPYDA
Sbjct: 1539 VSVHRVQLLLQVLSVKRFHHQQQQQQQPNSATAQEELTQSEIGEICDYFSRRVASEPYDA 1598

Query: 614  SRVASFITLLTLPISVLREFLKLIAWKKGLSQVQGGESTPSQKPRIELCLENHSGTPIDG 435
            SRVASFITLLTLPISVLREFLKLIAWKKG++Q QGG+  P+QKPRIELCLENHSG   D 
Sbjct: 1599 SRVASFITLLTLPISVLREFLKLIAWKKGVAQAQGGDIAPAQKPRIELCLENHSGLSTDE 1658

Query: 434  NSDGCPSKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGEN 255
            NS+   SKSNIHYDR HNSVDFALTVVLDPAHIPH+NAAGGAAWLPYCVSV+LRYSFGE+
Sbjct: 1659 NSERSTSKSNIHYDRQHNSVDFALTVVLDPAHIPHMNAAGGAAWLPYCVSVKLRYSFGES 1718

Query: 254  PRVIFLGMEGSHGGRACWLRPEDWETCKLRVARTVEVNGSMSGDVTQGRLKIVADSVQRT 75
              V FLGMEGSHGGRACWLR +DWE CK RVARTVEV+GS +GDV+QGRL+IVAD+VQRT
Sbjct: 1719 LVVSFLGMEGSHGGRACWLRVDDWEKCKQRVARTVEVSGSSTGDVSQGRLRIVADNVQRT 1778

Query: 74   LQLGLQGARDANTVAT 27
            L + LQG R+ + +AT
Sbjct: 1779 LHMCLQGLREGSEIAT 1794