BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00009342
         (602 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   153   3e-35
ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D sub...   133   2e-29
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   132   6e-29
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   130   2e-28
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   127   1e-27

>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  153 bits (386), Expect = 3e-35
 Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 18/173 (10%)
 Frame = +1

Query: 13   LGTGGQFNILYSGKGHEVSKPVDIFNKLSGPLC---SNLKV-------VSEIWRERSPIR 162
            LGTGGQF+ILYSGKGHE++KPVD++N L G       N K+       +SE +  +  ++
Sbjct: 1275 LGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLMLK 1334

Query: 163  K--------EQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIG 318
                     ++  S++ SI++   +L  IQK+  +LR ILH +YS+NE L+E DKS L+ 
Sbjct: 1335 NGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLNERLNEVDKSTLMM 1393

Query: 319  ALNFHPRKDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 477
            AL FHP +DEKIG G QDIKVG H ++Q +RCF +IR DG+ EDFSY+KC+ G
Sbjct: 1394 ALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLG 1446


>ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
          Length = 1622

 Score =  133 bits (335), Expect = 2e-29
 Identities = 76/170 (44%), Positives = 107/170 (62%), Gaps = 13/170 (7%)
 Frame = +1

Query: 7    IPLGTGGQFNILYSGKGHEVSKPVDIF-----------NKLSGPL--CSNLKVVSEIWRE 147
            + +GT G F+++YS KGH+V+K VD++           NK+   L   S+ K  SE   +
Sbjct: 1268 LSMGTSGMFDVIYSEKGHQVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGSEFRHK 1327

Query: 148  RSPIRKEQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALN 327
                 KE +     +I++   ++  IQK+  + R IL N+YS++ELLSESD+S ++  LN
Sbjct: 1328 NGYALKEGKQW--KTILRNFVTVNDIQKLTFASRCIL-NKYSIDELLSESDRSTMLRVLN 1384

Query: 328  FHPRKDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 477
            FHP K EK G G QDIKVG HP+++ SRCF +IR DG+VEDFSY KCI G
Sbjct: 1385 FHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILG 1434


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  132 bits (331), Expect = 6e-29
 Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 13/170 (7%)
 Frame = +1

Query: 7    IPLGTGGQFNILYSGKGHEVSKPVDIFNKLS---GPLCSNLKV----------VSEIWRE 147
            +P+GTGGQF+I+YS K  E++K VD++  L      +   + +           S  +R 
Sbjct: 1447 LPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSFNQMDQEINIPQSRKYSSGKCSSDFRS 1506

Query: 148  RSPIRKEQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKSKLIGALN 327
            ++     ++     S+++   +   IQ++    R IL N+Y ++E LSE+DK  ++  L+
Sbjct: 1507 KNGGYTPKEPKQWKSVLRNFMTANDIQRLTFDARVIL-NKYQIDETLSETDKLTIMKVLH 1565

Query: 328  FHPRKDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISG 477
            FHPR+DEK G+G Q+IKVG HPE   SRCFF+IRKDGSVEDFSY KCI G
Sbjct: 1566 FHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCILG 1615


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  130 bits (326), Expect = 2e-28
 Identities = 70/171 (40%), Positives = 110/171 (64%), Gaps = 12/171 (7%)
 Frame = +1

Query: 10   PLGTGGQFNILYSGKGHEVSKPVDIFNKLSGPLCSNLKVVSEIWRERSPIR----KEQQS 177
            P+GTGGQF+I+YSGKGHE SKP D+++ L+    S +       + + P++     +Q  
Sbjct: 942  PIGTGGQFDIIYSGKGHEPSKPTDVYSLLN----SQVGFAKPSEKIKLPVQFTSGNDQSQ 997

Query: 178  SLASS----IVKGVHSLEA----IQKIHISLRRILHNEYSVNELLSESDKSKLIGALNFH 333
            +L ++     + G+ SL +    I+++ ++L+R+LH EY+ +  L   DK+  + AL +H
Sbjct: 998  NLKTNGRKRFLAGMKSLRSAEDEIREVSLALKRMLH-EYASDCQLRGEDKTLALRALQYH 1056

Query: 334  PRKDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCISGFAR 486
            PR +EK G G  +IKVG+HP+H++SRCFFV++ DG+ ED SY K I G AR
Sbjct: 1057 PRWEEKTGAGTVEIKVGRHPDHKESRCFFVVKTDGTEEDISYRKSIQGLAR 1107


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  127 bits (320), Expect = 1e-27
 Identities = 70/175 (40%), Positives = 110/175 (62%), Gaps = 19/175 (10%)
 Frame = +1

Query: 4    EIPLGTGGQFNILYSGKGHEVSKPVDIFNKLSGPLCSNLK------VVSEIWRERS---- 153
            ++P    GQF+I+YSGKG E SKPVD++N L   + S  +      + ++I++       
Sbjct: 1305 KVPAIGTGQFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGVLDAQIYKSDKCGAQ 1364

Query: 154  ---------PIRKEQQSSLASSIVKGVHSLEAIQKIHISLRRILHNEYSVNELLSESDKS 306
                     P   + +  +  S ++ + + + IQ++  ++R+IL N+YSV++ L+ESDKS
Sbjct: 1365 FLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKIL-NKYSVDQQLNESDKS 1423

Query: 307  KLIGALNFHPRKDEKIGTGIQDIKVGKHPEHQKSRCFFVIRKDGSVEDFSYNKCI 471
             L+  L FHPR+DEKIG G +DIKV  HPE+Q +RCF ++R DG++EDFSY KC+
Sbjct: 1424 VLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCL 1478