BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00008454
         (1165 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   634   e-179
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   630   e-178
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D sub...   625   e-177
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...   624   e-176
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   623   e-176

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  634 bits (1635), Expect = e-179
 Identities = 307/389 (78%), Positives = 343/389 (88%), Gaps = 1/389 (0%)
 Frame = +1

Query: 1    MISDCLGKLEYPLGKN-ICPKPEIYNGQNCIVAVNVHQGYNQEDSIVLNRASLERGMFRT 177
            M+SDCLGK  YPLG N I P+ E +NGQ  IVAVNVH GYNQEDS+V+NRASLERGMFR+
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 178  EHTRCYKADVENNESLDGKRTRSKDRIDFGKTQSKIGRIDSLDDDGFPFIGANLQSGDIV 357
            EH R YKADV+N ES+ GK+ + +D ++FGK QSKIGR+DSLDDDGFPFIGANLQ+GDIV
Sbjct: 660  EHIRSYKADVDNKESV-GKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIV 718

Query: 358  IGRGAESGTDHSIKLKHTERGKVQKVILSANDEGTNFAFVSLRQVRSPTVGDKFSSMHGQ 537
            +GR AESG DHSIKLKHTERG VQKV+LSANDEG NFA VSLRQVR+P +GDKFSSMHGQ
Sbjct: 719  VGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQ 778

Query: 538  KGVVGLLEAQENFHFTRQGIVPDLVINPHAFPTRQTPGQLLEAALGKGIACGGSTKYATP 717
            KGV+G LE+QENF FT QGIVPD+V+NPHAFP+RQTPGQLLEAALGKGIACGG  KYATP
Sbjct: 779  KGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATP 838

Query: 718  FTTPSVDTITEQLHRAGFSRWGSERVCNGHTGTMAESMIFIGPTFYQRLIHMAEDKVKFR 897
            F+T SVD +T+QLHRAGFSRWGSERV NG TG M  S++F+GPTFYQRL HM+EDKVKFR
Sbjct: 839  FSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFR 898

Query: 898  NTGPVHPLTRQPVQDRKRFGGVKFGEMERDCLLAHGAAANLYERLFTLSDLSHMHICSKC 1077
            NTGPVHPLTRQPV DRKRFGG+KFGEMERDCL+AHGAAANL+ERLFTLSD S MHIC KC
Sbjct: 899  NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKC 958

Query: 1078 SNIANVILRQVPGGGKIRGSYCRFCQSAE 1164
            +NIANVI R VPGG KIRG YCRFC+S E
Sbjct: 959  NNIANVIQRAVPGGRKIRGPYCRFCESVE 987


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  630 bits (1625), Expect = e-178
 Identities = 309/387 (79%), Positives = 338/387 (87%), Gaps = 1/387 (0%)
 Frame = +1

Query: 7    SDCLGKLEYPLGKN-ICPKPEIYNGQNCIVAVNVHQGYNQEDSIVLNRASLERGMFRTEH 183
            SDCLGK     G N I PKPE+YNGQN IVAVNVH GYNQEDS+V+NRASLERGMFR+EH
Sbjct: 786  SDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 845

Query: 184  TRCYKADVENNESLDGKRTRSKDRIDFGKTQSKIGRIDSLDDDGFPFIGANLQSGDIVIG 363
             R YKADV+N E LD KR +  D ++FGK  SKIGR+DSLDDDGFPFIGANLQSGDIVIG
Sbjct: 846  IRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIG 904

Query: 364  RGAESGTDHSIKLKHTERGKVQKVILSANDEGTNFAFVSLRQVRSPTVGDKFSSMHGQKG 543
            R AESG DHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQVRSP +GDKFSSMHGQKG
Sbjct: 905  RCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 964

Query: 544  VVGLLEAQENFHFTRQGIVPDLVINPHAFPTRQTPGQLLEAALGKGIACGGSTKYATPFT 723
            V+G LE+QENF FTRQGIVPD+VINPH+FP+RQTPGQLLEAALGKGIACGGS KYATPF+
Sbjct: 965  VLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFS 1024

Query: 724  TPSVDTITEQLHRAGFSRWGSERVCNGHTGTMAESMIFIGPTFYQRLIHMAEDKVKFRNT 903
            T SV+ IT QLHRAGFSRWG+ERV NG TG M  S+IF+GPTFYQRLIHMAEDKVKFRNT
Sbjct: 1025 TLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNT 1084

Query: 904  GPVHPLTRQPVQDRKRFGGVKFGEMERDCLLAHGAAANLYERLFTLSDLSHMHICSKCSN 1083
            GPVHPLTRQPV DRKRFGG+KFGEMERDCL+AHGA+ANL+ERLFTLSD S MHIC KC N
Sbjct: 1085 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKN 1144

Query: 1084 IANVILRQVPGGGKIRGSYCRFCQSAE 1164
            +ANVI R VPGG KIRG YCR C+S +
Sbjct: 1145 VANVIQRAVPGGRKIRGPYCRVCESVD 1171


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score =  625 bits (1611), Expect = e-177
 Identities = 302/392 (77%), Positives = 343/392 (87%), Gaps = 4/392 (1%)
 Frame = +1

Query: 1    MISDCLGKLEYPLGKN----ICPKPEIYNGQNCIVAVNVHQGYNQEDSIVLNRASLERGM 168
            M SDCLGK +  LG+N    I PK E YNGQN IVAVNVH GYNQEDS+V+NRASL+RGM
Sbjct: 783  MASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGM 842

Query: 169  FRTEHTRCYKADVENNESLDGKRTRSKDRIDFGKTQSKIGRIDSLDDDGFPFIGANLQSG 348
            FR+EH R YK++++N ES D KR + +D ++F K QSKIGR+DSLDDDGFP++GANLQSG
Sbjct: 843  FRSEHIRSYKSEIDNKESSDKKR-KPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSG 901

Query: 349  DIVIGRGAESGTDHSIKLKHTERGKVQKVILSANDEGTNFAFVSLRQVRSPTVGDKFSSM 528
            DI+IG+GAESG D+S+KLKHTERG VQKV+LS+NDEG NFA VSLRQVRSP +GDKFSSM
Sbjct: 902  DIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSM 961

Query: 529  HGQKGVVGLLEAQENFHFTRQGIVPDLVINPHAFPTRQTPGQLLEAALGKGIACGGSTKY 708
            HGQKGV+G LE+QENF FTRQGIVPD+VINPHAFP+RQTPGQLLEAALGKGIACGG  + 
Sbjct: 962  HGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILRQ 1021

Query: 709  ATPFTTPSVDTITEQLHRAGFSRWGSERVCNGHTGTMAESMIFIGPTFYQRLIHMAEDKV 888
            ATPF+TPSVD ITEQLHRAGFSRWG+ERV NG TG M  S+IF+GPTFYQRL HM+EDKV
Sbjct: 1022 ATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKV 1081

Query: 889  KFRNTGPVHPLTRQPVQDRKRFGGVKFGEMERDCLLAHGAAANLYERLFTLSDLSHMHIC 1068
            KFRNTGPVHPLTRQPV DRKRFGG+KFGEMERDCL+AHGA+ANLYERLFTLSD S +HIC
Sbjct: 1082 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHIC 1141

Query: 1069 SKCSNIANVILRQVPGGGKIRGSYCRFCQSAE 1164
            SKC N+ANVILR V GG KIRG YCR C+SA+
Sbjct: 1142 SKCKNVANVILRPVSGGRKIRGPYCRHCESAD 1173


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score =  624 bits (1608), Expect = e-176
 Identities = 301/388 (77%), Positives = 340/388 (87%)
 Frame = +1

Query: 1    MISDCLGKLEYPLGKNICPKPEIYNGQNCIVAVNVHQGYNQEDSIVLNRASLERGMFRTE 180
            M SDCLGK  Y     + PK E YNGQN IVAVNVH GYNQEDS+V+NRASL+RGMFR+E
Sbjct: 819  MTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSE 878

Query: 181  HTRCYKADVENNESLDGKRTRSKDRIDFGKTQSKIGRIDSLDDDGFPFIGANLQSGDIVI 360
            H R YKA++EN ES + KR + +D ++FGK QSKIGR+DSLDDDGFPF+GANLQSGDI+I
Sbjct: 879  HIRSYKAEIENKESSE-KRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIII 937

Query: 361  GRGAESGTDHSIKLKHTERGKVQKVILSANDEGTNFAFVSLRQVRSPTVGDKFSSMHGQK 540
            GR A+SGTDHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQVRSP +GDKFSSMHGQK
Sbjct: 938  GRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQK 997

Query: 541  GVVGLLEAQENFHFTRQGIVPDLVINPHAFPTRQTPGQLLEAALGKGIACGGSTKYATPF 720
            GV+G LE+QENF FT+QGIVPD+VINPHAFP+RQTPGQLLEAALGKGIAC GS + ATPF
Sbjct: 998  GVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPF 1057

Query: 721  TTPSVDTITEQLHRAGFSRWGSERVCNGHTGTMAESMIFIGPTFYQRLIHMAEDKVKFRN 900
            +T SV+ IT+QLHRAGFSRWG+ERV NG TG M  S+IF+GPTFYQRL HM+EDKVKFRN
Sbjct: 1058 STSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRN 1117

Query: 901  TGPVHPLTRQPVQDRKRFGGVKFGEMERDCLLAHGAAANLYERLFTLSDLSHMHICSKCS 1080
            TGPVHPLTRQPV DRKRFGG+KFGEMERDCL+AHGA+ANLYERLFTLSD S +HICSKC 
Sbjct: 1118 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCK 1177

Query: 1081 NIANVILRQVPGGGKIRGSYCRFCQSAE 1164
            N+ANVILR V GG KIRG YCRFC+SA+
Sbjct: 1178 NVANVILRPVSGGRKIRGPYCRFCESAD 1205


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  623 bits (1607), Expect = e-176
 Identities = 303/389 (77%), Positives = 342/389 (87%), Gaps = 1/389 (0%)
 Frame = +1

Query: 1    MISDCLGKLEYPLG-KNICPKPEIYNGQNCIVAVNVHQGYNQEDSIVLNRASLERGMFRT 177
            MISDCLGK  Y  G K I P+PE +NGQ  IVAVNVH GYNQEDS+V+NRASLERGMFR+
Sbjct: 779  MISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 838

Query: 178  EHTRCYKADVENNESLDGKRTRSKDRIDFGKTQSKIGRIDSLDDDGFPFIGANLQSGDIV 357
            EH R YK++V+NNESLD KR +S+D + FGK QSKIGR+DSLDDDGFPFIGANLQ+GDIV
Sbjct: 839  EHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIV 897

Query: 358  IGRGAESGTDHSIKLKHTERGKVQKVILSANDEGTNFAFVSLRQVRSPTVGDKFSSMHGQ 537
            IGR AESG DHSIKLKHTERG VQKV++SAND+G NFA VSLRQVR+P +GDKFSSMHGQ
Sbjct: 898  IGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQ 957

Query: 538  KGVVGLLEAQENFHFTRQGIVPDLVINPHAFPTRQTPGQLLEAALGKGIACGGSTKYATP 717
            KGV+G LE+QENF FT QGIVPD+VINPHAFP+RQTPGQLLEAALGKGIACGG  ++ATP
Sbjct: 958  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATP 1017

Query: 718  FTTPSVDTITEQLHRAGFSRWGSERVCNGHTGTMAESMIFIGPTFYQRLIHMAEDKVKFR 897
            F+T SVD I +QLHRAGFSRWG ERV NG TG M  S+IF+GPTFYQRLIHMAEDKVKFR
Sbjct: 1018 FSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFR 1077

Query: 898  NTGPVHPLTRQPVQDRKRFGGVKFGEMERDCLLAHGAAANLYERLFTLSDLSHMHICSKC 1077
            NTGPVHPLTRQPV DRKRFGG+KFGEMERDCL+AHGAAANL+ERLFTLSD ++MHIC +C
Sbjct: 1078 NTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRC 1137

Query: 1078 SNIANVILRQVPGGGKIRGSYCRFCQSAE 1164
             NI+NVI R V GG K+RG YCR+C+S+E
Sbjct: 1138 KNISNVIQRSVAGGRKVRGPYCRYCESSE 1166