BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00006330
         (1457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              615   e-174
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   615   e-174
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   607   e-171
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   592   e-167
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   578   e-162

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  615 bits (1587), Expect = e-174
 Identities = 315/495 (63%), Positives = 377/495 (76%), Gaps = 10/495 (2%)
 Frame = -1

Query: 1457 LIKGAEKTFVAQEQICLKRLWVADQPNWSVSYRSEMKRRRIYIKLEELRAPESEHIQG-T 1281
            LIKGAEKTF+AQEQICLKRLWV+  P W V+YR   KR+R+Y+KLE    P+ E+ +G  
Sbjct: 260  LIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEP---PKDENNRGGE 316

Query: 1280 KILNVHFLSGIIPLWIFLFALGMTSDKEVIEMIDIENCDVKSVNLLLSTISYADDKYEG- 1104
            K+L V+F S  IP+WI  FALG +SDKEV+++ID    D    N+L+++I  AD + E  
Sbjct: 317  KVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 376

Query: 1103 ---FRKDENAMRRFEELISETKFPPQESLKECIDKYLFPSLSSPKQKALLAVYMVRCLLK 933
               FR+  NA+   ++L+   KFPP ES++ECI KYLFP+ S  KQKA    YMV+CLL+
Sbjct: 377  GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQ 436

Query: 932  AYSGERKCDNRDNFRNKRLDLASELLERELRIHIRHAEKRLVKFMQRDLYGNRGLHPIDY 753
            AY+G RKCDNRD+FRNKRL+LA ELLERELR+HIRHAE+R+VK MQR+LYG+R L PI+ 
Sbjct: 437  AYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIEN 496

Query: 752  YFDASIITNGLSRAFSTGGWSHSFKRAERISGVVANLRRTNPLQMMSDMRKTRQQVQYAG 573
            Y DASIITNGLSRAFSTG WSH FKR ERISGVVA LRRTNPLQM +DMRKTRQQVQY G
Sbjct: 497  YLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTG 556

Query: 572  KVGDARFPHPSHWGKLCFLSTSDGENSGLVKNMAITGLVSTNLMEPSVGTLLGCGMEKLV 393
            KVGDAR+PHPSHWGK+CFLST DGEN GLVKN+AITGLVST +++P V  L  CGMEKLV
Sbjct: 557  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLV 616

Query: 392  DNPSPVSLKGKDKIFLNGEWVGVCSDSSSFVTALRSKRRRMKVPPQVEIKRDLQQGEVRI 213
            D+ S   L GK+K+FL+G+WVGVC D  SFV  LR+KRR  ++P QVEIKRD QQGEVRI
Sbjct: 617  DDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRI 675

Query: 212  FSDSGRIMRPLLVVENLRKIKLCKG-EYNIHSLLKKXXXXXXXXXXXEDCQTAWGVKYLL 36
            FSD+GRI+RPLLVVENL+K+K  KG ++   SLL K           EDC TAWG+KYLL
Sbjct: 676  FSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL 735

Query: 35   LKDRD----YTHCEL 3
                D    YTHCEL
Sbjct: 736  KGHDDPPVKYTHCEL 750


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  615 bits (1587), Expect = e-174
 Identities = 315/495 (63%), Positives = 377/495 (76%), Gaps = 10/495 (2%)
 Frame = -1

Query: 1457 LIKGAEKTFVAQEQICLKRLWVADQPNWSVSYRSEMKRRRIYIKLEELRAPESEHIQG-T 1281
            LIKGAEKTF+AQEQICLKRLWV+  P W V+YR   KR+R+Y+KLE    P+ E+ +G  
Sbjct: 224  LIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEP---PKDENNRGGE 280

Query: 1280 KILNVHFLSGIIPLWIFLFALGMTSDKEVIEMIDIENCDVKSVNLLLSTISYADDKYEG- 1104
            K+L V+F S  IP+WI  FALG +SDKEV+++ID    D    N+L+++I  AD + E  
Sbjct: 281  KVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 340

Query: 1103 ---FRKDENAMRRFEELISETKFPPQESLKECIDKYLFPSLSSPKQKALLAVYMVRCLLK 933
               FR+  NA+   ++L+   KFPP ES++ECI KYLFP+ S  KQKA    YMV+CLL+
Sbjct: 341  GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQ 400

Query: 932  AYSGERKCDNRDNFRNKRLDLASELLERELRIHIRHAEKRLVKFMQRDLYGNRGLHPIDY 753
            AY+G RKCDNRD+FRNKRL+LA ELLERELR+HIRHAE+R+VK MQR+LYG+R L PI+ 
Sbjct: 401  AYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIEN 460

Query: 752  YFDASIITNGLSRAFSTGGWSHSFKRAERISGVVANLRRTNPLQMMSDMRKTRQQVQYAG 573
            Y DASIITNGLSRAFSTG WSH FKR ERISGVVA LRRTNPLQM +DMRKTRQQVQY G
Sbjct: 461  YLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTG 520

Query: 572  KVGDARFPHPSHWGKLCFLSTSDGENSGLVKNMAITGLVSTNLMEPSVGTLLGCGMEKLV 393
            KVGDAR+PHPSHWGK+CFLST DGEN GLVKN+AITGLVST +++P V  L  CGMEKLV
Sbjct: 521  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLV 580

Query: 392  DNPSPVSLKGKDKIFLNGEWVGVCSDSSSFVTALRSKRRRMKVPPQVEIKRDLQQGEVRI 213
            D+ S   L GK+K+FL+G+WVGVC D  SFV  LR+KRR  ++P QVEIKRD QQGEVRI
Sbjct: 581  DDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRI 639

Query: 212  FSDSGRIMRPLLVVENLRKIKLCKG-EYNIHSLLKKXXXXXXXXXXXEDCQTAWGVKYLL 36
            FSD+GRI+RPLLVVENL+K+K  KG ++   SLL K           EDC TAWG+KYLL
Sbjct: 640  FSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL 699

Query: 35   LKDRD----YTHCEL 3
                D    YTHCEL
Sbjct: 700  KGHDDPPVKYTHCEL 714


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  607 bits (1564), Expect = e-171
 Identities = 307/492 (62%), Positives = 378/492 (76%), Gaps = 7/492 (1%)
 Frame = -1

Query: 1457 LIKGAEKTFVAQEQICLKRLWVADQPNWSVSYRSEMKRRRIYIKLEELRAPESEHIQG-T 1281
            LIKGAEKTF+AQEQICLKRLWV++ P+W+V+YR   KR+R+YIKLE    P+ EHI+G  
Sbjct: 48   LIKGAEKTFIAQEQICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEP---PKREHIRGGE 104

Query: 1280 KILNVHFLSGIIPLWIFLFALGMTSDKEVIEMIDIENCDVKSVNLLLSTISYADDKYEGF 1101
            K+L+V+F +   P+WI  FALG +SDKEV+ +ID +  D + VN+L+++I  AD+  +GF
Sbjct: 105  KVLSVYFSAVEFPIWILFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGF 164

Query: 1100 RKDENAMRRFEELISETKFPPQESLKECIDKYLFPSLSSPKQKALLAVYMVRCLLKAYSG 921
            R+  NA+    + I   KFPPQES++  +  YLFP+LS  +QKA    YMV+CLL+AY+G
Sbjct: 165  RRGRNAINDIMKKIENCKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTG 224

Query: 920  ERKCDNRDNFRNKRLDLASELLERELRIHIRHAEKRLVKFMQRDLYGNRGLHPIDYYFDA 741
             RK DNRD+FRNKRL+LA ELLERELR+H++HAE+R+VK MQRDLYG R +H I++Y DA
Sbjct: 225  RRKIDNRDDFRNKRLELAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDA 284

Query: 740  SIITNGLSRAFSTGGWSHSFKRAERISGVVANLRRTNPLQMMSDMRKTRQQVQYAGKVGD 561
            SIITNGLSRAFSTG WSH +K+ ERISGVVA LRRTNPLQ ++DMRKTRQQV Y GKVGD
Sbjct: 285  SIITNGLSRAFSTGAWSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGD 344

Query: 560  ARFPHPSHWGKLCFLSTSDGENSGLVKNMAITGLVSTNLMEPSVGTLLGCGMEKLVDNPS 381
            AR+PHPSHWGK+CFLST DGEN GLVKN+AITGLVSTN+ E  +  LL  GMEKLVD+ S
Sbjct: 345  ARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTS 404

Query: 380  PVSLKGKDKIFLNGEWVGVCSDSSSFVTALRSKRRRMKVPPQVEIKRDLQQGEVRIFSDS 201
             + L GK K+FL+G WVGVC DS SFV ALR KRRR +VP QVEIKRD Q  EVR+FSD+
Sbjct: 405  TL-LSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDA 463

Query: 200  GRIMRPLLVVENLRKIKLCK-GEYNIHSLLKKXXXXXXXXXXXEDCQTAWGVKYLLLKDR 24
            GRI+RPLLVVENL KIK  K G+Y+  SLL K           EDC+TAWG+ YL +++ 
Sbjct: 464  GRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENE 523

Query: 23   -----DYTHCEL 3
                  YTHCEL
Sbjct: 524  AKATVKYTHCEL 535


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  592 bits (1526), Expect = e-167
 Identities = 302/492 (61%), Positives = 373/492 (75%), Gaps = 7/492 (1%)
 Frame = -1

Query: 1457 LIKGAEKTFVAQEQICLKRLWVADQPNWSVSYRSEMKRRRIYIKLEELRAPESEHIQG-T 1281
            + KGAEKTF+AQEQ+CLKRLWV++ P W V YR   KR+R+YIKL E    + EHI+G  
Sbjct: 241  IAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETL--KLEHIKGGE 298

Query: 1280 KILNVHFLSGIIPLWIFLFALGMTSDKEVIEMIDIENCDVKSVNLLLSTISYADDKYEGF 1101
            K L+V+ L+ + P+W+  FALG++SD+EV+ +ID++  D   VN+L+++I  AD   E F
Sbjct: 299  KALSVYILAEM-PIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDF 357

Query: 1100 RKDENAMRRFEELISETKFPPQESLKECIDKYLFPSLSSPKQKALLAVYMVRCLLKAYSG 921
            RK + A+   + LI   KFPPQES++ECI+ YLFP+LS  KQKA    YMV+CLL ++ G
Sbjct: 358  RKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIG 417

Query: 920  ERKCDNRDNFRNKRLDLASELLERELRIHIRHAEKRLVKFMQRDLYGNRGLHPIDYYFDA 741
             RK DNRD+FRNKRL+LA ELLERELR HI+HAE+R+VK MQRDLYG+R + PI++Y DA
Sbjct: 418  RRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDA 477

Query: 740  SIITNGLSRAFSTGGWSHSFKRAERISGVVANLRRTNPLQMMSDMRKTRQQVQYAGKVGD 561
            SIITNGLSRAFSTG W H +KR ER+SGVVA LRRTNPLQM +DMRK+RQQV Y GKVGD
Sbjct: 478  SIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGD 537

Query: 560  ARFPHPSHWGKLCFLSTSDGENSGLVKNMAITGLVSTNLMEPSVGTLLGCGMEKLVDNPS 381
            AR+PHPSHWGKLCFLST DGEN GLVKN+A  GLVST +++P + TL  CGM+KLVD+ S
Sbjct: 538  ARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCS 597

Query: 380  PVSLKGKDKIFLNGEWVGVCSDSSSFVTALRSKRRRMKVPPQVEIKRDLQQGEVRIFSDS 201
              SL GK K+ L+GEWVGVC DS+ FV+ LR KRRR +VP QVE+KRD  QGEVRIFSD 
Sbjct: 598  -TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDP 656

Query: 200  GRIMRPLLVVENLRKIKLCK-GEYNIHSLLKKXXXXXXXXXXXEDCQTAWGVKYLLLKDR 24
            GRI+RPLLVV NL+KIK  K G+Y   SLL             EDC+TAWGV+Y+L  D+
Sbjct: 657  GRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADK 716

Query: 23   D-----YTHCEL 3
            +     YTHCEL
Sbjct: 717  ENPPAKYTHCEL 728


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  578 bits (1489), Expect = e-162
 Identities = 294/492 (59%), Positives = 369/492 (75%), Gaps = 7/492 (1%)
 Frame = -1

Query: 1457 LIKGAEKTFVAQEQICLKRLWVADQPNWSVSYRSEMKRRRIYIKLEELRAPESEHIQGTK 1278
            LIKGAEK F+AQEQIC+KRLW+++   W+VSY+SE+KR R+ ++L EL   + E+I+G K
Sbjct: 199  LIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELS--KLEYIKGEK 256

Query: 1277 I-LNVHFLSGIIPLWIFLFALGMTSDKEVIEMIDIENCDVKSVNLLLSTISYADDKYEGF 1101
              L V+FLS  IPLWI  FALG+ SDKEVI++ID  + D   VN+  ++I  AD+K E F
Sbjct: 257  KGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHF 316

Query: 1100 RKDENAMRRFEELISETKFPPQESLKECIDKYLFPSLSSPKQKALLAVYMVRCLLKAYSG 921
            R+++ A+   ++L+ +T+FPP+ES+++ I  YLFP L+S + KA    YMV+CLL+AY+G
Sbjct: 317  RREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTG 376

Query: 920  ERKCDNRDNFRNKRLDLASELLERELRIHIRHAEKRLVKFMQRDLYGNRGLHPIDYYFDA 741
             RKCDNRD+FRNKR +LASELLEREL++H+ HA +R+ K +QRDLYG+R +HPI++Y DA
Sbjct: 377  HRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDA 436

Query: 740  SIITNGLSRAFSTGGWSHSFKRAERISGVVANLRRTNPLQMMSDMRKTRQQVQYAGKVGD 561
            SI+TNGL+RAFSTG W H FK  ER+SGVV NL R NPLQ M D+RKTRQQV Y GKVGD
Sbjct: 437  SIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGD 496

Query: 560  ARFPHPSHWGKLCFLSTSDGENSGLVKNMAITGLVSTNLMEPSVGTLLGCGMEKLVDNPS 381
            AR+PHPSHWG++CFLST DGEN GLVKN+A+TG+VSTN+ E  V  L   GMEKLVD+ +
Sbjct: 497  ARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVDD-T 555

Query: 380  PVSLKGKDKIFLNGEWVGVCSDSSSFVTALRSKRRRMKVPPQVEIKRDLQQGEVRIFSDS 201
               L GK K+FLNGEWVGVC DS  FV  LRS RRR ++P QVEIKRD QQ EVRIFSD+
Sbjct: 556  YTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDA 615

Query: 200  GRIMRPLLVVENLRKIKLCK-GEYNIHSLLKKXXXXXXXXXXXEDCQTAWGVKYLLL--- 33
            GRI+RPLLVVENL KIK  K G Y   SLL K           EDC TAWG+K+LL    
Sbjct: 616  GRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIE 675

Query: 32   --KDRDYTHCEL 3
              +   Y+HCEL
Sbjct: 676  GKQPMKYSHCEL 687