BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00002480
         (1239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   314   3e-83
ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   312   1e-82
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   311   3e-82
gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]    296   6e-78
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...   295   2e-77

>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
            Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
            29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  314 bits (805), Expect = 3e-83
 Identities = 173/253 (68%), Positives = 195/253 (77%), Gaps = 7/253 (2%)
 Frame = -2

Query: 1124 SLVSFKTPTSSKPICISSSRA--ASRLVTKVAVYDQDQ-EVVSDG----RGDANFSPDLK 966
            SL  F  P SS  + +SSS +  +SR V KV + D DQ E V DG      + NFSPDLK
Sbjct: 29   SLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLK 88

Query: 965  LFVGNLPFNVDSGDLAGLFGQAGTVQMVEVIYDKLSGRSRGFGFVTMSTVQEVEAAEQQF 786
            +FVGNLPF+ DS  LA LF +AG V+MVEVIYDKL+GRSRGFGFVTMS+ +EVEAA QQF
Sbjct: 89   IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 785  NGFEFEGRQLRVNSGPPPPKDENSFRTPRTGGSFDSPSRGGGSFDSSNRVYVGNLSWEVD 606
            NG+E +GR LRVNSGPPP K ENS        SF   SRGGGSFDSSNRVYVGNL+W VD
Sbjct: 149  NGYELDGRALRVNSGPPPEKRENS--------SFRGGSRGGGSFDSSNRVYVGNLAWGVD 200

Query: 605  DQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVSYSSSEEVNNAVSALNGVDLKGRDIR 426
              ALE LFSEQGKV DAKVVYDR+SGRSRGFGFV+YSS+EEVNNA+ +L+GVDL GR IR
Sbjct: 201  QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260

Query: 425  VSVAEARPPRRQF 387
            VS AEARPPRRQF
Sbjct: 261  VSPAEARPPRRQF 273


>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
            vinifera]
          Length = 288

 Score =  312 bits (800), Expect = 1e-82
 Identities = 179/281 (63%), Positives = 210/281 (74%), Gaps = 16/281 (5%)
 Frame = -2

Query: 1181 KTLVFSTKTPNQSVGFFSPSLVSFKTPTSSKPICIS-SSRA----ASRLVTKVAV---YD 1026
            KTL  S  T   SV FFS           S  I +S SSR     +SR V  VAV   Y+
Sbjct: 16   KTLAISKPT---SVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVRNVAVSSDYE 72

Query: 1025 QDQEVVSDGRGDANFSPDLKLFVGNLPFNVDSGDLAGLFGQAGTVQMVEVIYDKLSGRSR 846
            QD++V+SD  G+ +FSPDLKLFVGNLPFNVDS  LAGLF QAG V+MVEVIYDK++GRSR
Sbjct: 73   QDEDVLSD-EGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSR 131

Query: 845  GFGFVTMSTVQEVEAAEQQFNGFEFEGRQLRVNSGPPPPKDENS--------FRTPRTGG 690
            GFGFVTMSTV+EVEAA QQFNG+E EGRQLRVNSGPPP + ENS        FR   T  
Sbjct: 132  GFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENT-- 189

Query: 689  SFDSPSRGGGSFDSSNRVYVGNLSWEVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFG 510
            +F  P RGG + +S+NR+YVGNLSW VDD ALE LFSEQGKVT+A+V+YDRE+GRSRGFG
Sbjct: 190  NFRGP-RGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFG 248

Query: 509  FVSYSSSEEVNNAVSALNGVDLKGRDIRVSVAEARPPRRQF 387
            FV+Y+S+EEVN A+ +L+GVDL GR IRV++AEAR PRRQF
Sbjct: 249  FVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEAR-PRRQF 288


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
            Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
            RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  311 bits (796), Expect = 3e-82
 Identities = 172/253 (67%), Positives = 195/253 (77%), Gaps = 7/253 (2%)
 Frame = -2

Query: 1124 SLVSFKTPTSSKPICISSSRA--ASRLVTKVAVYDQDQ-EVVSDG----RGDANFSPDLK 966
            SL  F  P SS  + +SS  +  +SR V KV + D DQ E V DG      + NFSPDLK
Sbjct: 29   SLSFFSLPPSSLNLSLSSPSSCFSSRFVRKVTLPDFDQIEDVEDGDEGVEEERNFSPDLK 88

Query: 965  LFVGNLPFNVDSGDLAGLFGQAGTVQMVEVIYDKLSGRSRGFGFVTMSTVQEVEAAEQQF 786
            +FVGNL F+ DS  LA LF +AG V+MVEVIYDKL+GRSRGFGFVTMS+ +EVEAA QQF
Sbjct: 89   IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 785  NGFEFEGRQLRVNSGPPPPKDENSFRTPRTGGSFDSPSRGGGSFDSSNRVYVGNLSWEVD 606
            NG+E +GR LRVNSGPPP K ENS  + R   SF   SRGGGSFDSSNRVYVGNL+W VD
Sbjct: 149  NGYELDGRALRVNSGPPPEKRENS--SFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206

Query: 605  DQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVSYSSSEEVNNAVSALNGVDLKGRDIR 426
              ALE LFSEQGKV DAKVVYDR+SGRSRGFGFV+YSS+EEVNNA+ +L+GVDL GR IR
Sbjct: 207  QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266

Query: 425  VSVAEARPPRRQF 387
            VS AEARPPRRQF
Sbjct: 267  VSPAEARPPRRQF 279


>gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
          Length = 289

 Score =  296 bits (759), Expect = 6e-78
 Identities = 170/277 (61%), Positives = 198/277 (71%), Gaps = 12/277 (4%)
 Frame = -2

Query: 1181 KTLVFSTKTPNQSVGFFSPSLVSFKTPTSSKPICISS--SRAASRLVTKVAVYDQDQEVV 1008
            K+L F    P  SV   SPSL SFK  + S    I++  +  ASR V  VA+   + EV 
Sbjct: 16   KSLPFGVSRP-ASVSLLSPSL-SFKLNSDSVSFSIAAKWNSPASRFVRNVAI-TSEFEVE 72

Query: 1007 SDGRGDA------NFSPDLKLFVGNLPFNVDSGDLAGLFGQAGTVQMVEVIYDKLSGRSR 846
             DG  D       +FS DLKLFVGNLPFNVDS  LA LF  AG V+MVEVIYDK++GRSR
Sbjct: 73   EDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSR 132

Query: 845  GFGFVTMSTVQEVEAAEQQFNGFEFEGRQLRVNSGPPPPKDENSF-RTPRT--GGSFDSP 675
            GFGFVTMS+V EVEAA QQFNG+E +GR LRVN+GPPPPK E+ F R PR+  G S    
Sbjct: 133  GFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGY 192

Query: 674  SRGGGS-FDSSNRVYVGNLSWEVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVSY 498
              GGGS   S NRVYVGNLSW VDD ALE LFSEQGKV +A+V+YDR+SGRS+GFGFV+Y
Sbjct: 193  GGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252

Query: 497  SSSEEVNNAVSALNGVDLKGRDIRVSVAEARPPRRQF 387
             SS+EV NA+ +L+G DL GR IRVS AEARPPRRQ+
Sbjct: 253  DSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289


>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
            gi|223541388|gb|EEF42939.1| ribonucleoprotein,
            chloroplast, putative [Ricinus communis]
          Length = 280

 Score =  295 bits (755), Expect = 2e-77
 Identities = 164/263 (62%), Positives = 193/263 (73%), Gaps = 16/263 (6%)
 Frame = -2

Query: 1127 PSLVSFKTPTSSKPICISSS-------------RAASRLVTKVAV---YDQDQEVVSDGR 996
            P  +SFK    +KPI I SS              ++SR V  VA+   + Q+++V SDG 
Sbjct: 27   PISLSFKL--HAKPISIPSSLFSSFVPLQQQPYSSSSRFVPSVAISSEFGQEEDVSSDG- 83

Query: 995  GDANFSPDLKLFVGNLPFNVDSGDLAGLFGQAGTVQMVEVIYDKLSGRSRGFGFVTMSTV 816
             +++FS DLKLFVGNLPFNVDS  LAGLF  AG V+MVEVIYDK++GRSRGFGFVTMS++
Sbjct: 84   DESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSI 143

Query: 815  QEVEAAEQQFNGFEFEGRQLRVNSGPPPPKDENSFRTPRTGGSFDSPSRGGGSFDSSNRV 636
             EVEAA QQFNG+E EGR LRVNSGPPP ++ +  R+PR GG       GGG     NR+
Sbjct: 144  DEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPRFGG-----GGGGGESLEGNRL 198

Query: 635  YVGNLSWEVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVSYSSSEEVNNAVSALN 456
            YVGNLSW VD+ ALE  FSEQGKV DAKVVYDRESGRSRGFGFV+YSS+EEV NA+ +LN
Sbjct: 199  YVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLN 258

Query: 455  GVDLKGRDIRVSVAEARPPRRQF 387
            G +L GR IRVSVAEAR PRRQF
Sbjct: 259  GAELDGRAIRVSVAEAR-PRRQF 280