BLASTX nr result
ID: Aconitum21_contig00002041
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Aconitum21_contig00002041
(648 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,... 296 2e-78
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c... 295 4e-78
gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana] 285 4e-75
gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein pre... 285 4e-75
ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana] gi|122... 285 4e-75
>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 296 bits (759), Expect = 2e-78
Identities = 153/194 (78%), Positives = 167/194 (86%)
Frame = -1
Query: 648 KLFVGNLPFTVDSSDLAELFGQAGNVEVVEVIYDKLTGRSRGFGFVTMSTVEEVQAAEQQ 469
K+FVGNLPF+ DS+ LAELF +AGNVE+VEVIYDKLTGRSRGFGFVTMS+ EEV+AA QQ
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 468 FNGYELEGRPLRVNSGPPPPKDENSFRAPRAGGSFDSPSRGGGSFDSSNRVYVGNLSWAV 289
FNGYEL+GR LRVNSGPPP K ENS SF SRGGGSFDSSNRVYVGNL+W V
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENS--------SFRGGSRGGGSFDSSNRVYVGNLAWGV 199
Query: 288 DDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEVNNAIESLNGVDLKGRDI 109
D ALE LFSEQGKV +AKVVYDR+SGRSRGFGFVTY+S+EEVNNAIESL+GVDL GR I
Sbjct: 200 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259
Query: 108 RVSVAEARPPRRQF 67
RVS AEARPPRRQF
Sbjct: 260 RVSPAEARPPRRQF 273
Score = 80.1 bits (196), Expect = 3e-13
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = -1
Query: 339 SFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEV 160
+F +++VGNL ++ D AL +LF G V +V+YD+ +GRSRGFGFVT +S EEV
Sbjct: 82 NFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141
Query: 159 NNAIESLNGVDLKGRDIRVSVAEARPPRRQ 70
A + NG +L GR +RV+ PP ++
Sbjct: 142 EAACQQFNGYELDGRALRVN--SGPPPEKR 169
>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 295 bits (756), Expect = 4e-78
Identities = 153/194 (78%), Positives = 168/194 (86%)
Frame = -1
Query: 648 KLFVGNLPFTVDSSDLAELFGQAGNVEVVEVIYDKLTGRSRGFGFVTMSTVEEVQAAEQQ 469
K+FVGNL F+ DS+ LAELF +AGNVE+VEVIYDKLTGRSRGFGFVTMS+ EEV+AA QQ
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 468 FNGYELEGRPLRVNSGPPPPKDENSFRAPRAGGSFDSPSRGGGSFDSSNRVYVGNLSWAV 289
FNGYEL+GR LRVNSGPPP K ENS + R SF SRGGGSFDSSNRVYVGNL+W V
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENS--SFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGV 205
Query: 288 DDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEVNNAIESLNGVDLKGRDI 109
D ALE LFSEQGKV +AKVVYDR+SGRSRGFGFVTY+S+EEVNNAIESL+GVDL GR I
Sbjct: 206 DQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265
Query: 108 RVSVAEARPPRRQF 67
RVS AEARPPRRQF
Sbjct: 266 RVSPAEARPPRRQF 279
Score = 79.7 bits (195), Expect = 4e-13
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = -1
Query: 339 SFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEV 160
+F +++VGNL ++ D AL +LF G V +V+YD+ +GRSRGFGFVT +S EEV
Sbjct: 82 NFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141
Query: 159 NNAIESLNGVDLKGRDIRVSVAEARPPRRQ 70
A + NG +L GR +RV+ PP ++
Sbjct: 142 EAACQQFNGYELDGRALRVN--SGPPPEKR 169
>gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 285 bits (730), Expect = 4e-75
Identities = 147/198 (74%), Positives = 165/198 (83%), Gaps = 4/198 (2%)
Frame = -1
Query: 648 KLFVGNLPFTVDSSDLAELFGQAGNVEVVEVIYDKLTGRSRGFGFVTMSTVEEVQAAEQQ 469
KLFVGNLPF VDS+ LA+LF AGNVE+VEVIYDK+TGRSRGFGFVTMS+V EV+AA QQ
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 468 FNGYELEGRPLRVNSGPPPPKDENSF-RAPRA--GGSFDSPSRGGGS-FDSSNRVYVGNL 301
FNGYEL+GRPLRVN+GPPPPK E+ F R PR+ G S GGGS S NRVYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 300 SWAVDDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEVNNAIESLNGVDLK 121
SW VDD ALE LFSEQGKV EA+V+YDR+SGRS+GFGFVTY SS+EV NAI+SL+G DL
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 120 GRDIRVSVAEARPPRRQF 67
GR IRVS AEARPPRRQ+
Sbjct: 272 GRQIRVSEAEARPPRRQY 289
Score = 79.7 bits (195), Expect = 4e-13
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1
Query: 339 SFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEV 160
SF + +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT +S EV
Sbjct: 86 SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEV 145
Query: 159 NNAIESLNGVDLKGRDIRVSVAEARPPRRQ 70
A + NG +L GR +RV+ A PP+R+
Sbjct: 146 EAAAQQFNGYELDGRPLRVN-AGPPPPKRE 174
>gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 285 bits (730), Expect = 4e-75
Identities = 147/194 (75%), Positives = 166/194 (85%)
Frame = -1
Query: 648 KLFVGNLPFTVDSSDLAELFGQAGNVEVVEVIYDKLTGRSRGFGFVTMSTVEEVQAAEQQ 469
K+FVGNLPF+VDS+ LAELF +AG+VE+VEVIYDKLTGRSRGFGFVTMS+ E V+AA QQ
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQ 159
Query: 468 FNGYELEGRPLRVNSGPPPPKDENSFRAPRAGGSFDSPSRGGGSFDSSNRVYVGNLSWAV 289
FNGYE++GR LRVNSGP PPK ENSF S RGGGS DSSNRVYVGNL+W+V
Sbjct: 160 FNGYEIDGRALRVNSGPAPPKRENSF----GDNSSYQGGRGGGSMDSSNRVYVGNLAWSV 215
Query: 288 DDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEVNNAIESLNGVDLKGRDI 109
D Q LE LFSEQGKV +AKVVYDR+SGRSRGFGFVTY+S++EVN+AIESL+GVDL GR I
Sbjct: 216 DQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAI 275
Query: 108 RVSVAEARPPRRQF 67
RVS AEARPPRRQF
Sbjct: 276 RVSPAEARPPRRQF 289
>ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName:
Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor gi|13877809|gb|AAK43982.1|AF370167_1 putative
RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|15081717|gb|AAK82513.1|
At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|20197716|gb|AAM15222.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein
[Arabidopsis thaliana]
Length = 289
Score = 285 bits (730), Expect = 4e-75
Identities = 147/198 (74%), Positives = 165/198 (83%), Gaps = 4/198 (2%)
Frame = -1
Query: 648 KLFVGNLPFTVDSSDLAELFGQAGNVEVVEVIYDKLTGRSRGFGFVTMSTVEEVQAAEQQ 469
KLFVGNLPF VDS+ LA+LF AGNVE+VEVIYDK+TGRSRGFGFVTMS+V EV+AA QQ
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 468 FNGYELEGRPLRVNSGPPPPKDENSF-RAPRA--GGSFDSPSRGGGS-FDSSNRVYVGNL 301
FNGYEL+GRPLRVN+GPPPPK E+ F R PR+ G S GGGS S NRVYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 300 SWAVDDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEVNNAIESLNGVDLK 121
SW VDD ALE LFSEQGKV EA+V+YDR+SGRS+GFGFVTY SS+EV NAI+SL+G DL
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 120 GRDIRVSVAEARPPRRQF 67
GR IRVS AEARPPRRQ+
Sbjct: 272 GRQIRVSEAEARPPRRQY 289
Score = 79.7 bits (195), Expect = 4e-13
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = -1
Query: 339 SFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTEAKVVYDRESGRSRGFGFVTYTSSEEV 160
SF + +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT +S EV
Sbjct: 86 SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEV 145
Query: 159 NNAIESLNGVDLKGRDIRVSVAEARPPRRQ 70
A + NG +L GR +RV+ A PP+R+
Sbjct: 146 EAAAQQFNGYELDGRPLRVN-AGPPPPKRE 174