BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00001650
         (2535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  1424   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  1393   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  1392   0.0  
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...  1388   0.0  
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...  1388   0.0  

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 1424 bits (3685), Expect = 0.0
 Identities = 701/740 (94%), Positives = 714/740 (96%)
 Frame = -1

Query: 2535 LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 2356
            LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM
Sbjct: 454  LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 513

Query: 2355 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIF 2176
            MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ+TKIF
Sbjct: 514  MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIF 573

Query: 2175 VNGCWVGIHYNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 1996
            VNGCWVGIH NP+LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE
Sbjct: 574  VNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 633

Query: 1995 XXXXXXXXXXXRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLVTARLN 1816
                       RALQ RES ED GWHDLV++G+IEYVD      TMISMTINDL++ARLN
Sbjct: 634  KQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLN 693

Query: 1815 PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 1636
            PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM
Sbjct: 694  PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 753

Query: 1635 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 1456
            DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 754  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 813

Query: 1455 FFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 1276
            FFRSLFFRSYRDEEKKMGTL+KEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED
Sbjct: 814  FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 873

Query: 1275 VIIGKTTPIAQDESSGIASRYTRRDHSTSMRHSESGMVDQVLLTTNADGLRFVKVRMRSV 1096
            VIIGKTTPI+QD+S G ASRYTRRDHSTS+RHSESGMVDQVLLTTNADGLRFVKVRMRSV
Sbjct: 874  VIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 933

Query: 1095 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 916
            RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM
Sbjct: 934  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 993

Query: 915  GKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 736
            GKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY
Sbjct: 994  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1053

Query: 735  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 556
            YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL
Sbjct: 1054 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1113

Query: 555  FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 376
            FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI
Sbjct: 1114 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1173

Query: 375  APRMLTKEVKTSKDNRKKGA 316
            APRMLTKEVK  KD +KKGA
Sbjct: 1174 APRMLTKEVKPPKDQKKKGA 1193


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 1393 bits (3605), Expect = 0.0
 Identities = 678/740 (91%), Positives = 709/740 (95%)
 Frame = -1

Query: 2535 LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 2356
            LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGM
Sbjct: 452  LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 511

Query: 2355 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIF 2176
            MCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIF
Sbjct: 512  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 571

Query: 2175 VNGCWVGIHYNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 1996
            VNGCWVGIH +P++LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVE
Sbjct: 572  VNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 631

Query: 1995 XXXXXXXXXXXRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLVTARLN 1816
                       +ALQQRE+ ED GWHDLV +G+IEY+D      TMISMTINDLV+ARLN
Sbjct: 632  KQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLN 691

Query: 1815 PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 1636
            PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RM
Sbjct: 692  PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 751

Query: 1635 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 1456
            DT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 752  DTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 811

Query: 1455 FFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 1276
            FFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGED
Sbjct: 812  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGED 871

Query: 1275 VIIGKTTPIAQDESSGIASRYTRRDHSTSMRHSESGMVDQVLLTTNADGLRFVKVRMRSV 1096
            V+IGKTTPIAQDE+ G A+RYTRRDHSTS+RHSE+GMVDQVLLTTNADGLRFVKVR+RSV
Sbjct: 872  VVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 931

Query: 1095 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 916
            RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIM
Sbjct: 932  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIM 991

Query: 915  GKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 736
            GKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTY
Sbjct: 992  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTY 1051

Query: 735  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 556
            YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL
Sbjct: 1052 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1111

Query: 555  FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 376
            FDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAI
Sbjct: 1112 FDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAI 1171

Query: 375  APRMLTKEVKTSKDNRKKGA 316
            APRMLTK+VK +KD +KK A
Sbjct: 1172 APRMLTKDVKQAKDKKKKQA 1191


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 1392 bits (3602), Expect = 0.0
 Identities = 679/740 (91%), Positives = 708/740 (95%)
 Frame = -1

Query: 2535 LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 2356
            LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGM
Sbjct: 455  LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514

Query: 2355 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIF 2176
            MCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIF
Sbjct: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574

Query: 2175 VNGCWVGIHYNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 1996
            VNGCWVGIH +P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVE
Sbjct: 575  VNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634

Query: 1995 XXXXXXXXXXXRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLVTARLN 1816
                        ALQQRES+E+ GWHDLV +G+IEY+D      TMISMTI+DLV AR+N
Sbjct: 635  KQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARIN 694

Query: 1815 PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 1636
            PEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RM
Sbjct: 695  PEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754

Query: 1635 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 1456
            DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814

Query: 1455 FFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 1276
            FFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGED
Sbjct: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGED 874

Query: 1275 VIIGKTTPIAQDESSGIASRYTRRDHSTSMRHSESGMVDQVLLTTNADGLRFVKVRMRSV 1096
            VIIGKTTPIAQ+E+ G ++RYTRRDHS S+RHSE+G+VDQVLLTTNADGLRFVKVR+RSV
Sbjct: 875  VIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSV 934

Query: 1095 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 916
            RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM
Sbjct: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994

Query: 915  GKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 736
            GKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY
Sbjct: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054

Query: 735  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 556
            YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL
Sbjct: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1114

Query: 555  FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 376
            FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI
Sbjct: 1115 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174

Query: 375  APRMLTKEVKTSKDNRKKGA 316
            APRMLTK+VK +KD +KKGA
Sbjct: 1175 APRMLTKDVKPTKDQKKKGA 1194


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 1388 bits (3592), Expect = 0.0
 Identities = 679/738 (92%), Positives = 705/738 (95%)
 Frame = -1

Query: 2535 LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 2356
            LATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM
Sbjct: 482  LATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 541

Query: 2355 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIF 2176
            MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIF
Sbjct: 542  MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIF 601

Query: 2175 VNGCWVGIHYNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 1996
            VNGCWVGIH NP+LLVKTLR+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE
Sbjct: 602  VNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVE 661

Query: 1995 XXXXXXXXXXXRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLVTARLN 1816
                       RALQQRE+ E+ GWHDLV +G+IEY+D      TMISMTINDL+ AR N
Sbjct: 662  NQRLLIKKRHIRALQQRETPEE-GWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHN 720

Query: 1815 PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 1636
            PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM
Sbjct: 721  PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 780

Query: 1635 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 1456
            DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 781  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 840

Query: 1455 FFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 1276
            FFRSLFFRSYRDEEKKMGTL+KE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED
Sbjct: 841  FFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 900

Query: 1275 VIIGKTTPIAQDESSGIASRYTRRDHSTSMRHSESGMVDQVLLTTNADGLRFVKVRMRSV 1096
            VIIGKT+PI QD++ G A+RYT+RDHSTS+RHSESGMVDQVLLTTNADGLRFVKVRMRSV
Sbjct: 901  VIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 960

Query: 1095 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 916
            RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIM
Sbjct: 961  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIM 1020

Query: 915  GKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 736
            GKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTY
Sbjct: 1021 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 1080

Query: 735  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 556
            YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERL
Sbjct: 1081 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERL 1140

Query: 555  FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 376
            FDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI
Sbjct: 1141 FDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1200

Query: 375  APRMLTKEVKTSKDNRKK 322
            APRMLT++ KT KD +K+
Sbjct: 1201 APRMLTQDNKTGKDQKKR 1218


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
            gi|125545063|gb|EAY91202.1| hypothetical protein
            OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 1388 bits (3592), Expect = 0.0
 Identities = 679/738 (92%), Positives = 705/738 (95%)
 Frame = -1

Query: 2535 LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 2356
            LATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM
Sbjct: 486  LATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 545

Query: 2355 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIF 2176
            MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEW TENFEEISPAVIPQA KIF
Sbjct: 546  MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIF 605

Query: 2175 VNGCWVGIHYNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 1996
            VNGCWVGIH NP+LLVKTLR+LRRQ+DVNTEVGV+RDIRLKELRLYTDYGRCSRPLFIVE
Sbjct: 606  VNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVE 665

Query: 1995 XXXXXXXXXXXRALQQRESAEDFGWHDLVTRGYIEYVDXXXXXXTMISMTINDLVTARLN 1816
                       RALQQRE+ E+ GWHDLV +G+IEY+D      TMISMTINDL+ AR N
Sbjct: 666  NQRLLIKKRHIRALQQRETPEE-GWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHN 724

Query: 1815 PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 1636
            PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM
Sbjct: 725  PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRM 784

Query: 1635 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 1456
            DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG
Sbjct: 785  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 844

Query: 1455 FFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 1276
            FFRSLFFRSYRDEEKKMGTL+KE+FGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED
Sbjct: 845  FFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 904

Query: 1275 VIIGKTTPIAQDESSGIASRYTRRDHSTSMRHSESGMVDQVLLTTNADGLRFVKVRMRSV 1096
            VIIGKT+PI QD++ G A+RYT+RDHSTS+RHSESGMVDQVLLTTNADGLRFVKVRMRSV
Sbjct: 905  VIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 964

Query: 1095 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 916
            RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIM
Sbjct: 965  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIM 1024

Query: 915  GKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 736
            GKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTY
Sbjct: 1025 GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 1084

Query: 735  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 556
            YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA FLKERL
Sbjct: 1085 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERL 1144

Query: 555  FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 376
            FDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI
Sbjct: 1145 FDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1204

Query: 375  APRMLTKEVKTSKDNRKK 322
            APRMLT++ KT KD +K+
Sbjct: 1205 APRMLTQDNKTGKDQKKR 1222