BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00000980
         (1205 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   499   e-139
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   489   e-136
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   489   e-136
ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|2...   484   e-134
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   484   e-134

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  499 bits (1284), Expect = e-139
 Identities = 254/312 (81%), Positives = 280/312 (89%)
 Frame = +1

Query: 1   RFPRIKIREMKDDYLKFELHSTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 180
           RFPRIKIRE+KDDY KFEL  TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFI
Sbjct: 8   RFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFI 67

Query: 181 AHRLGLIPLTSDRAMGMRFSRXXXXXXXXXXXEFCSVEFHLDVRCDGDQTLDVTSGDLIS 360
           AHRLGLIPLTS+RAM MRFSR           ++CSVEFHL  +C  DQTLDVTS DL S
Sbjct: 68  AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLYS 127

Query: 361 TDPSVVPVDVAARSSSNAYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 540
           +D +VVPVD    S S+ YD+SE RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 128 SDHTVVPVDF---SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184

Query: 541 VTFMYEPEIHINEEMMESLSLDDKRNWIESSPTKVFDIDPNTHQVVVVDPEAYTYDEEVI 720
           VTFMYEP+IHINE++MESLSL++K++W+ESSPTKVFDIDPNT QVVVVDPEAYTYDEEVI
Sbjct: 185 VTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVI 244

Query: 721 KKAEAMGKPGLVEIIAKEDSFIFTVESTGAVKASKLVINAIDVLKQKLDAVRLSDDTVEA 900
           KKAE+MGKPGLV I AKEDSFIFTVESTGA+KAS+LV+NAI++LKQKLDAVRLS+DTVEA
Sbjct: 245 KKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEA 304

Query: 901 DEQFGELGAHMR 936
           D+QFGELGAHMR
Sbjct: 305 DDQFGELGAHMR 316


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  489 bits (1258), Expect = e-136
 Identities = 249/312 (79%), Positives = 278/312 (89%)
 Frame = +1

Query: 1   RFPRIKIREMKDDYLKFELHSTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 180
           RFP+IKIRE+KDDY KFEL  TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFI
Sbjct: 8   RFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFI 67

Query: 181 AHRLGLIPLTSDRAMGMRFSRXXXXXXXXXXXEFCSVEFHLDVRCDGDQTLDVTSGDLIS 360
           AHRLGLIPLTS+RAM MRFSR           EFCSVEFHL  +C  D+TLDVTS DLIS
Sbjct: 68  AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLIS 127

Query: 361 TDPSVVPVDVAARSSSNAYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 540
           +D +VVPVD    S S+ YD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 128 SDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184

Query: 541 VTFMYEPEIHINEEMMESLSLDDKRNWIESSPTKVFDIDPNTHQVVVVDPEAYTYDEEVI 720
           VTFMYEPEIHINE++MESL+L++K +W+ESSPTKVFDID ++ QVVV D EAYTYD+EV+
Sbjct: 185 VTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVL 244

Query: 721 KKAEAMGKPGLVEIIAKEDSFIFTVESTGAVKASKLVINAIDVLKQKLDAVRLSDDTVEA 900
           KKAEAMGKPGLVEI AKEDSFIFTVESTGA+KAS+LV+NAIDVLKQKLDAVRLS+DTVEA
Sbjct: 245 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEA 304

Query: 901 DEQFGELGAHMR 936
           D+QFGELGAHMR
Sbjct: 305 DDQFGELGAHMR 316


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  489 bits (1258), Expect = e-136
 Identities = 249/312 (79%), Positives = 278/312 (89%)
 Frame = +1

Query: 1   RFPRIKIREMKDDYLKFELHSTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 180
           RFP+IKIRE+KDDY KFEL  TDASMANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFI
Sbjct: 8   RFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFI 67

Query: 181 AHRLGLIPLTSDRAMGMRFSRXXXXXXXXXXXEFCSVEFHLDVRCDGDQTLDVTSGDLIS 360
           AHRLGLIPLTS+RAM MRFSR           EFCSVEFHL  +C  D+TLDVTS DLIS
Sbjct: 68  AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLIS 127

Query: 361 TDPSVVPVDVAARSSSNAYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 540
           +D +VVPVD    S S+ YD+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 128 SDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184

Query: 541 VTFMYEPEIHINEEMMESLSLDDKRNWIESSPTKVFDIDPNTHQVVVVDPEAYTYDEEVI 720
           VTFMYEPEIHINE++MESL+L++K +W+ESSPTKVFDID ++ QVVV D EAYTYD+EV+
Sbjct: 185 VTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVL 244

Query: 721 KKAEAMGKPGLVEIIAKEDSFIFTVESTGAVKASKLVINAIDVLKQKLDAVRLSDDTVEA 900
           KKAEAMGKPGLVEI AKEDSFIFTVESTGA+KAS+LV+NAIDVLKQKLDAVRLS+DTVEA
Sbjct: 245 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEA 304

Query: 901 DEQFGELGAHMR 936
           D+QFGELGAHMR
Sbjct: 305 DDQFGELGAHMR 316


>ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|222850273|gb|EEE87820.1|
           predicted protein [Populus trichocarpa]
          Length = 346

 Score =  484 bits (1247), Expect = e-134
 Identities = 252/314 (80%), Positives = 278/314 (88%), Gaps = 2/314 (0%)
 Frame = +1

Query: 1   RFPRIKIREMKDDYLKFELHSTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 180
           RFP+IKIREMKDDYLKFEL  TDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI
Sbjct: 8   RFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67

Query: 181 AHRLGLIPLTSDRAMGMRFSRXXXXXXXXXXXEFCSVEFHLDVRCDGDQTLDVTSGDLIS 360
           AHRLGLIPLTS+RAMGMRFSR           E+CSVEFHL  +C  DQTLDVTS DL S
Sbjct: 68  AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTSKDLYS 127

Query: 361 TDPSVVPVDVAARSSSN-AYDASEN-RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 534
           +D +V+PVD +  S +N  +D +E  RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA
Sbjct: 128 SDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 187

Query: 535 ATVTFMYEPEIHINEEMMESLSLDDKRNWIESSPTKVFDIDPNTHQVVVVDPEAYTYDEE 714
           ATVTFMYEPEIHINE++ME+L+L++K +WIESSPTKVFDID  T QVVVVDPEAYTYD+E
Sbjct: 188 ATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTYDDE 247

Query: 715 VIKKAEAMGKPGLVEIIAKEDSFIFTVESTGAVKASKLVINAIDVLKQKLDAVRLSDDTV 894
           VIKKAEAMGK GL++I AKEDSFIFTVESTGAVKAS+LV+NAI++LKQKLDAVRLSDDTV
Sbjct: 248 VIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSDDTV 307

Query: 895 EADEQFGELGAHMR 936
           EAD+QFGELG HMR
Sbjct: 308 EADDQFGELGVHMR 321


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 319

 Score =  484 bits (1245), Expect = e-134
 Identities = 245/312 (78%), Positives = 277/312 (88%)
 Frame = +1

Query: 1   RFPRIKIREMKDDYLKFELHSTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 180
           R PR+KIRE+KDDY KFEL  TDAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVLNDEFI
Sbjct: 9   RMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFI 68

Query: 181 AHRLGLIPLTSDRAMGMRFSRXXXXXXXXXXXEFCSVEFHLDVRCDGDQTLDVTSGDLIS 360
           AHRLGLIPLTS+RAM MRFSR           EFCSVEFHL V+C  DQTLDVTS DL S
Sbjct: 69  AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYS 128

Query: 361 TDPSVVPVDVAARSSSNAYDASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 540
           +DP+V PVD    S  +A D+  NRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAAT
Sbjct: 129 SDPTVSPVDF---SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAAT 185

Query: 541 VTFMYEPEIHINEEMMESLSLDDKRNWIESSPTKVFDIDPNTHQVVVVDPEAYTYDEEVI 720
           VTFMYEPEIHINE++ME+L+L++KR W++SSPT+VF+IDP T QV+VVD EAYTYD+EV+
Sbjct: 186 VTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVL 245

Query: 721 KKAEAMGKPGLVEIIAKEDSFIFTVESTGAVKASKLVINAIDVLKQKLDAVRLSDDTVEA 900
           KKAEAMGKPGLVEIIA++DSFIFTVESTGAVKAS+LV+NAI++LKQKLDAVRLS+DTVEA
Sbjct: 246 KKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEA 305

Query: 901 DEQFGELGAHMR 936
           D+QFGELGAHMR
Sbjct: 306 DDQFGELGAHMR 317