BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aconitum21_contig00000328
         (1114 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   584   e-164
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     582   e-164
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     580   e-163
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   578   e-163
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    578   e-163

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score =  584 bits (1505), Expect = e-164
 Identities = 273/369 (73%), Positives = 320/369 (86%)
 Frame = +3

Query: 3    FFAEDKSTSVNNIVSWMGKFKNRNVAKCAARMGQSFSSTYATIRVPRNDVDFDFPDIKRN 182
            FF+E+++ SV ++ SWMGKF NRN+AKCAARMGQ FSSTYATI VP  +V+ D PDI+RN
Sbjct: 526  FFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERN 585

Query: 183  SYVFSDGIGIITPDLAAEVAEKLQLTENRPSAYQIRYAGCKGVIACWPGKDDGIRLYLRE 362
             YVFSDGIGIITPDLA EVAEKL+L  + P AYQIRYAGCKGV+ACWPGK DG+RL LR 
Sbjct: 586  GYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRP 645

Query: 363  SMNKFESKHDIIEVVSWTRFQPGFLNRQIVTLLSSLDVPNEVFSKMQDKMVYKLDRVLTD 542
            SMNKF+S H  +E+ SWTRFQPGFLNRQI+TLLS+L+VP+ VF KMQ+ MV KL+++  +
Sbjct: 646  SMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVN 705

Query: 543  TDVALDVIISSCGEEGNTAALMLSAGFKPQTEPHLKGMLTCIRASQLGDLIDKARIFVSS 722
            +DVA DV+ +SC ++GN AA+MLSAGFKP  EPHL+GMLTC+RA+QL DL +K RIFV S
Sbjct: 706  SDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPS 765

Query: 723  ARWLMGCLDELGLLEQGQCFIQVSNPSLEKCFVKHGFKISEADSNVKVIKGTVVIAKNPC 902
             RWLMGCLDELG+LEQGQCFIQVSN SLEKCF+KHG K SEA+ N++VIKGTVVIAKNPC
Sbjct: 766  GRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPC 825

Query: 903  LHPGDVRILEAVDIPALHHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDEDLIPPR 1082
            LHPGDVR+LEAVD+P LHHL DCLVFPQKG+RPH+NEASGSDLDGDLYFVTWDE+LIPP 
Sbjct: 826  LHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPS 885

Query: 1083 KKSWPPMDY 1109
            K+SW PM Y
Sbjct: 886  KRSWIPMQY 894


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  582 bits (1500), Expect = e-164
 Identities = 278/369 (75%), Positives = 317/369 (85%)
 Frame = +3

Query: 3    FFAEDKSTSVNNIVSWMGKFKNRNVAKCAARMGQSFSSTYATIRVPRNDVDFDFPDIKRN 182
            FFAED    V  I+SWMG+F NRNVAKCAARMGQ FSSTYAT+ VP ++V+ + PDI+RN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 183  SYVFSDGIGIITPDLAAEVAEKLQLTENRPSAYQIRYAGCKGVIACWPGKDDGIRLYLRE 362
             YVFSDGIG+I+ DLA EVAEKL L+ N PSAYQIRYAGCKGV+ACWP K+DGIRL LR 
Sbjct: 583  GYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 363  SMNKFESKHDIIEVVSWTRFQPGFLNRQIVTLLSSLDVPNEVFSKMQDKMVYKLDRVLTD 542
            SM KF+S H I+E+ SWTRFQPGFLNRQIVTLLSSLDV + +F +MQ +M+  LD++L D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 543  TDVALDVIISSCGEEGNTAALMLSAGFKPQTEPHLKGMLTCIRASQLGDLIDKARIFVSS 722
            +DVA DVI +SC E GNTAA+MLSAGFKPQ+EPHL+GML+ IRASQLGDL +KARIFV S
Sbjct: 703  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 723  ARWLMGCLDELGLLEQGQCFIQVSNPSLEKCFVKHGFKISEADSNVKVIKGTVVIAKNPC 902
             RWLMGCLDELG LEQGQCFIQVS+PSLE CF+KHG K S+   N++V+KG VVIAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 903  LHPGDVRILEAVDIPALHHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDEDLIPPR 1082
            LHPGDVRILEAVD+P LHHL DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDE+LIPP 
Sbjct: 823  LHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 1083 KKSWPPMDY 1109
            KKSW PM+Y
Sbjct: 883  KKSWIPMNY 891


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  580 bits (1494), Expect = e-163
 Identities = 279/369 (75%), Positives = 317/369 (85%)
 Frame = +3

Query: 3    FFAEDKSTSVNNIVSWMGKFKNRNVAKCAARMGQSFSSTYATIRVPRNDVDFDFPDIKRN 182
            FFAED    V  I+SWMG+F NRNVAKCAARMGQ FSSTYAT+ VP ++V+ + PDI+RN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 183  SYVFSDGIGIITPDLAAEVAEKLQLTENRPSAYQIRYAGCKGVIACWPGKDDGIRLYLRE 362
             YVFSDGIG+I+ DLA EVAEKL L+ N PSAYQIRYAGCKGV+ACWP K+DGIRL LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 363  SMNKFESKHDIIEVVSWTRFQPGFLNRQIVTLLSSLDVPNEVFSKMQDKMVYKLDRVLTD 542
            SM KF+S H I+E+ SWTRFQPGFLNRQIVTLLSSLDV + +F +MQ +M+  LD++L D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 543  TDVALDVIISSCGEEGNTAALMLSAGFKPQTEPHLKGMLTCIRASQLGDLIDKARIFVSS 722
            +DVA DVI +SC E GNTAALMLSAGFKPQ+EPHL+GML+ IRASQLGDL +KARIFV S
Sbjct: 703  SDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 723  ARWLMGCLDELGLLEQGQCFIQVSNPSLEKCFVKHGFKISEADSNVKVIKGTVVIAKNPC 902
             RWLMGCLDELG LEQGQCFIQVS+PSLE CFVKHG K S+   N++V+KG VVIAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 903  LHPGDVRILEAVDIPALHHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDEDLIPPR 1082
            LHPGDVRILEAVD+P+L HL DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDE+LIPP 
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 1083 KKSWPPMDY 1109
            KKSW PM+Y
Sbjct: 883  KKSWIPMNY 891


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  578 bits (1491), Expect = e-163
 Identities = 277/369 (75%), Positives = 317/369 (85%)
 Frame = +3

Query: 3    FFAEDKSTSVNNIVSWMGKFKNRNVAKCAARMGQSFSSTYATIRVPRNDVDFDFPDIKRN 182
            FFAED    V  I+SWMG+F NRNVAKCAARMGQ FSSTYAT+ VP ++V+ + PDI+RN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 183  SYVFSDGIGIITPDLAAEVAEKLQLTENRPSAYQIRYAGCKGVIACWPGKDDGIRLYLRE 362
             YVFSDGIG+I+ DLA EVAEKL L+ N P+AYQIRYAGCKGV+ACWP K+DGIRL LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 363  SMNKFESKHDIIEVVSWTRFQPGFLNRQIVTLLSSLDVPNEVFSKMQDKMVYKLDRVLTD 542
            SM KF+S H I+E+ SWTRFQPGFLNRQIVTLLSSLDV + +F +MQ +M+  LD++L D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVD 702

Query: 543  TDVALDVIISSCGEEGNTAALMLSAGFKPQTEPHLKGMLTCIRASQLGDLIDKARIFVSS 722
            +DVA DVI +SC E GNTAALMLSAGFKPQ+EPHL+GML+ IRASQLGDL +KARIFV S
Sbjct: 703  SDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 723  ARWLMGCLDELGLLEQGQCFIQVSNPSLEKCFVKHGFKISEADSNVKVIKGTVVIAKNPC 902
             RWLMGCLDELG LEQGQCFIQVS+PSLE CFVKHG K S+   N++V+KG VVIAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 903  LHPGDVRILEAVDIPALHHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDEDLIPPR 1082
            LHPGDVRILEAVD+P+L HL DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDE++IPP 
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPS 882

Query: 1083 KKSWPPMDY 1109
            KKSW PM+Y
Sbjct: 883  KKSWIPMNY 891


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  578 bits (1491), Expect = e-163
 Identities = 278/369 (75%), Positives = 316/369 (85%)
 Frame = +3

Query: 3    FFAEDKSTSVNNIVSWMGKFKNRNVAKCAARMGQSFSSTYATIRVPRNDVDFDFPDIKRN 182
            FFAED    V  I+SWMG+F NRNVAKCAARMGQ FSSTYAT+ VP  +V+ + PDI+RN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERN 582

Query: 183  SYVFSDGIGIITPDLAAEVAEKLQLTENRPSAYQIRYAGCKGVIACWPGKDDGIRLYLRE 362
             YVFSDGIG+I+ DLA EVAEKL L+ N PSAYQIRYAGCKGV+ACWP K+DGIRL LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 363  SMNKFESKHDIIEVVSWTRFQPGFLNRQIVTLLSSLDVPNEVFSKMQDKMVYKLDRVLTD 542
            SM KF+S H I+E+ SWTRFQPGFLNRQIVTLLSSLDV + +F +MQ +M+  LD++L D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 543  TDVALDVIISSCGEEGNTAALMLSAGFKPQTEPHLKGMLTCIRASQLGDLIDKARIFVSS 722
            +DVA DVI +SC E GNTAA+MLSAGFKPQ+EPHL+GML+ IRASQLGDL +KARIFV S
Sbjct: 703  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 723  ARWLMGCLDELGLLEQGQCFIQVSNPSLEKCFVKHGFKISEADSNVKVIKGTVVIAKNPC 902
             RWLMGCLDELG LEQGQCFIQVS+PSLE CFVKHG K S+   N++V+KG VVIAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPC 822

Query: 903  LHPGDVRILEAVDIPALHHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDEDLIPPR 1082
            LHPGDVRILEAVD+P+L HL DCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDE+LIPP 
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 1083 KKSWPPMDY 1109
            KKSW PM+Y
Sbjct: 883  KKSWIPMNY 891