BLASTX nr result
ID: Achyranthes23_contig00056351
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00056351
(355 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 114 2e-27
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 115 1e-26
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 113 9e-26
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 113 9e-26
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 111 3e-25
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 108 3e-25
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 110 6e-25
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 110 8e-25
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 110 8e-25
gb|AAP43919.1| integrase [Gossypium hirsutum] 110 1e-24
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 108 1e-24
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 109 1e-24
ref|XP_004980450.1| PREDICTED: uncharacterized protein LOC101760... 111 2e-24
ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775... 111 2e-24
ref|XP_004980445.1| PREDICTED: uncharacterized protein LOC101756... 110 3e-24
ref|XP_004980451.1| PREDICTED: uncharacterized protein LOC101761... 110 3e-24
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 106 1e-23
gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Ja... 108 1e-23
gb|AAM08860.1|AC113339_6 Putative retroelement [Oryza sativa Jap... 108 1e-23
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 103 2e-23
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 114 bits (286), Expect(2) = 2e-27
Identities = 48/86 (55%), Positives = 65/86 (75%)
Frame = -2
Query: 318 FVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHFYWPRMLAHV 139
++LQ+GFLF+G++LC+P+ S R LLI+E H GG+ GH G+QKTLE+LQ FYWPRM+ V
Sbjct: 1071 YLLQEGFLFQGNKLCVPRGSYRDLLIREVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDV 1130
Query: 138 YQVVARCSTCQRAKMTFHKGEYKPLP 61
++ RCS CQ +K +F G Y PLP
Sbjct: 1131 QIILRRCSKCQLSKSSFQPGPYTPLP 1156
Score = 33.5 bits (75), Expect(2) = 2e-27
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P +P EDLSMDFI+ALP+T
Sbjct: 1158 PSKPWEDLSMDFIVALPRT 1176
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 115 bits (289), Expect(2) = 1e-26
Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
+++ C+ G N FVL DGF+F+ ++LCIP S+R LL+QEAHGGGL GH G++KT ++L
Sbjct: 1203 VLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVKKTEDIL 1262
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WP+M V + VARC+TCQRAK + G Y PLP
Sbjct: 1263 ATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLP 1302
Score = 29.3 bits (64), Expect(2) = 1e-26
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1304 PSVPWEDISMDFVLGLPRT 1322
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 113 bits (283), Expect(2) = 9e-26
Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FV+ DGF+F+ ++LCIP S+R LL+QEAHGGGL GH G +KT ++L
Sbjct: 1159 VLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDIL 1218
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLPA*T 52
+HF+WP+M V + VARC+TCQ+AK H G Y PLP T
Sbjct: 1219 ASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPT 1261
Score = 28.9 bits (63), Expect(2) = 9e-26
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1260 PTVPWEDISMDFVLGLPRT 1278
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 113 bits (283), Expect(2) = 9e-26
Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FV+ DGF+F+ ++LCIP S+R LL+QEAHGGGL GH G +KT ++L
Sbjct: 1138 VLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDIL 1197
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLPA*T 52
+HF+WP+M V + VARC+TCQ+AK H G Y PLP T
Sbjct: 1198 ASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPT 1240
Score = 28.9 bits (63), Expect(2) = 9e-26
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1239 PTVPWEDISMDFVLGLPRT 1257
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 111 bits (278), Expect(2) = 3e-25
Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FVL +GF+F+ ++LCIP S+R LL+QEAHGGGL GH G++KT ++L
Sbjct: 1187 VLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDIL 1246
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WP+M V + VARC+TCQ+AK+ + G Y PLP
Sbjct: 1247 ADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLP 1286
Score = 29.3 bits (64), Expect(2) = 3e-25
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1288 PSVPWEDISMDFVLGLPRT 1306
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 108 bits (270), Expect(2) = 3e-25
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = -2
Query: 318 FVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHFYWPRMLAHV 139
+++Q+GFLF G++LC+P+ R LLI+E H GLAGH GIQKT ++LQ FYWP+ML V
Sbjct: 1059 YLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGHFGIQKTYDILQEQFYWPKMLGDV 1118
Query: 138 YQVVARCSTCQRAKMTFHKGEYKPLP 61
V+ RC+ CQ++K F G Y PLP
Sbjct: 1119 QDVIKRCAPCQQSKSYFQTGPYTPLP 1144
Score = 32.3 bits (72), Expect(2) = 3e-25
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P +P ED+SMDFI+ALP+T
Sbjct: 1146 PNQPWEDISMDFIVALPRT 1164
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 110 bits (275), Expect(2) = 6e-25
Identities = 51/100 (51%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FVL +GF+F+ ++LCIP S+R LL+QEAHGGGL GH G++KT ++L
Sbjct: 1187 VLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDIL 1246
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WP+M V + VARC+TCQ+AK + G Y PLP
Sbjct: 1247 ADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 1286
Score = 29.3 bits (64), Expect(2) = 6e-25
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1288 PSVPWEDISMDFVLGLPRT 1306
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 110 bits (274), Expect(2) = 8e-25
Identities = 50/100 (50%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
+++ C G N F++ +GF+F+ ++LCIP SIR LL+QEAHGGGL GH G++K ++L
Sbjct: 1218 VLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVL 1277
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WPRM V + VARC+TCQ+AK + G Y PLP
Sbjct: 1278 ATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 1317
Score = 29.3 bits (64), Expect(2) = 8e-25
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1319 PSVPWEDISMDFVLGLPRT 1337
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 110 bits (274), Expect(2) = 8e-25
Identities = 50/100 (50%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
+++ C G N F++ +GF+F+ ++LCIP SIR LL+QEAHGGGL GH G++K ++L
Sbjct: 1215 VLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVL 1274
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WPRM V + VARC+TCQ+AK + G Y PLP
Sbjct: 1275 ATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 1314
Score = 29.3 bits (64), Expect(2) = 8e-25
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1316 PSVPWEDISMDFVLGLPRT 1334
>gb|AAP43919.1| integrase [Gossypium hirsutum]
Length = 334
Score = 110 bits (276), Expect(2) = 1e-24
Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Frame = -2
Query: 354 LIKQCEHGNVNLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQ 175
+ K C H F L DG LF+ +RLCIPKCS+R LLI EAH GGL GH G+ KTL++LQ
Sbjct: 130 IYKNCGHTAFEKFYLVDGLLFRLNRLCIPKCSMRELLIHEAHSGGLMGHFGVAKTLDILQ 189
Query: 174 AHFYWPRMLAHVYQVVARCSTCQRAK-MTFHKGEYKPLPA*TS 49
HF+WP M V +V ++C TC++AK G Y PLP TS
Sbjct: 190 EHFHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPIPTS 232
Score = 28.1 bits (61), Expect(2) = 1e-24
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P DLSMDFI+ LP+T
Sbjct: 230 PTSPWVDLSMDFILGLPRT 248
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 108 bits (270), Expect(2) = 1e-24
Identities = 49/100 (49%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N +++ DGF+F+ ++LCIP S+R LL+QEAHGGGL GH G +KT ++L
Sbjct: 1162 VLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDIL 1221
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WP+M V ++VARC+TCQ+AK + G Y PLP
Sbjct: 1222 AGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLP 1261
Score = 30.0 bits (66), Expect(2) = 1e-24
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1263 PSAPWEDISMDFVLGLPRT 1281
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 109 bits (272), Expect(2) = 1e-24
Identities = 51/100 (51%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C G N FVL +GF+F+ ++LCIP S+R LL+QEAHGGGL GH G++KT ++L
Sbjct: 500 VLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDIL 559
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
HF+WP+M V + VARC+TCQ+AK + G Y PLP
Sbjct: 560 ADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 599
Score = 29.3 bits (64), Expect(2) = 1e-24
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 601 PSVPWEDISMDFVLGLPRT 619
>ref|XP_004980450.1| PREDICTED: uncharacterized protein LOC101760928 [Setaria italica]
Length = 1090
Score = 111 bits (277), Expect(2) = 2e-24
Identities = 52/100 (52%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FV+ DGF+F+ +RLCIP S+R LL+QEAHGGGL GH G +KT++ L
Sbjct: 569 VLLNCKEGRTWNKFVINDGFVFRANRLCIPVGSVRLLLMQEAHGGGLMGHFGAKKTVDAL 628
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
+HF+WP+M V + VARC+TCQ+AK + G Y PLP
Sbjct: 629 ASHFFWPQMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 668
Score = 26.9 bits (58), Expect(2) = 2e-24
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P D+SMDF++ LP+T
Sbjct: 670 PSIPWADISMDFVLGLPRT 688
>ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775623 [Setaria italica]
Length = 911
Score = 111 bits (277), Expect(2) = 2e-24
Identities = 52/100 (52%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FV+ DGF+F+ +RLCIP S+R LL+QEAHGGGL GH G +KT++ L
Sbjct: 445 VLLNCKEGRTWNKFVINDGFVFRANRLCIPVGSVRLLLMQEAHGGGLMGHFGAKKTVDAL 504
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
+HF+WP+M V + VARC+TCQ+AK + G Y PLP
Sbjct: 505 ASHFFWPQMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 544
Score = 26.9 bits (58), Expect(2) = 2e-24
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P D+SMDF++ LP+T
Sbjct: 546 PSIPWADISMDFVLGLPRT 564
>ref|XP_004980445.1| PREDICTED: uncharacterized protein LOC101756049, partial [Setaria
italica]
Length = 763
Score = 110 bits (276), Expect(2) = 3e-24
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = -2
Query: 303 GFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHFYWPRMLAHVYQVVA 124
GFLF+ ++LC+P S+R LL+QEAHGGGL GH G+ KT E+L AHF+WPRM A V ++VA
Sbjct: 465 GFLFRANKLCVPASSVRRLLLQEAHGGGLMGHFGVYKTHEVLAAHFFWPRMRADVERLVA 524
Query: 123 RCSTCQRAKMTFHK-GEYKPLPA*TS 49
RC+TCQ+AK + G Y PLP TS
Sbjct: 525 RCTTCQKAKSRLNNHGLYMPLPVPTS 550
Score = 26.6 bits (57), Expect(2) = 3e-24
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P D+SMDF++ LP+T
Sbjct: 548 PTSPWLDISMDFVLGLPRT 566
>ref|XP_004980451.1| PREDICTED: uncharacterized protein LOC101761720, partial [Setaria
italica]
Length = 738
Score = 110 bits (276), Expect(2) = 3e-24
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = -2
Query: 303 GFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHFYWPRMLAHVYQVVA 124
GFLF+ ++LC+P S+R LL+QEAHGGGL GH G+ KT E+L AHF+WPRM A V ++VA
Sbjct: 440 GFLFRANKLCVPASSVRRLLLQEAHGGGLMGHFGVYKTHEVLAAHFFWPRMRADVERLVA 499
Query: 123 RCSTCQRAKMTFHK-GEYKPLPA*TS 49
RC+TCQ+AK + G Y PLP TS
Sbjct: 500 RCTTCQKAKSRLNNHGLYMPLPVPTS 525
Score = 26.6 bits (57), Expect(2) = 3e-24
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P D+SMDF++ LP+T
Sbjct: 523 PTSPWLDISMDFVLGLPRT 541
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 106 bits (264), Expect(2) = 1e-23
Identities = 49/100 (49%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Frame = -2
Query: 354 LIKQCEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELL 178
++ C+ G N FVL +GF+F+ ++LCIP S+ LL+QEAHGGGL GH G++KT ++L
Sbjct: 1083 VLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDIL 1142
Query: 177 QAHFYWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
H +WP+M V + VARC+TCQ+AK + G Y PLP
Sbjct: 1143 ADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 1182
Score = 29.3 bits (64), Expect(2) = 1e-23
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P ED+SMDF++ LP+T
Sbjct: 1184 PSVPWEDISMDFVLGLPRT 1202
>gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 540
Score = 108 bits (269), Expect(2) = 1e-23
Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Frame = -2
Query: 342 CEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHF 166
C+ G N FV+ GF+++ +RLCIP S+R LLIQEAHGGGL GH G +KT ++L HF
Sbjct: 86 CKEGRTWNKFVINGGFVYRANRLCIPVGSVRLLLIQEAHGGGLTGHFGAKKTEDVLAMHF 145
Query: 165 YWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
+WPRM + + VARC+TCQ+AK + G Y PLP
Sbjct: 146 FWPRMRKDIERFVARCTTCQKAKSRLNPHGLYMPLP 181
Score = 26.9 bits (58), Expect(2) = 1e-23
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P D+SMDF++ LP+T
Sbjct: 183 PSIPWADISMDFVLGLPRT 201
>gb|AAM08860.1|AC113339_6 Putative retroelement [Oryza sativa Japonica Group]
Length = 411
Score = 108 bits (269), Expect(2) = 1e-23
Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Frame = -2
Query: 342 CEHGNV-NLFVLQDGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHF 166
C+ G N FV+ GF+++ +RLCIP S+R LLIQEAHGGGL GH G +KT ++L HF
Sbjct: 4 CKEGRTWNKFVINGGFVYRANRLCIPVGSVRLLLIQEAHGGGLTGHFGAKKTEDVLAMHF 63
Query: 165 YWPRMLAHVYQVVARCSTCQRAKMTFH-KGEYKPLP 61
+WPRM + + VARC+TCQ+AK + G Y PLP
Sbjct: 64 FWPRMRKDIERFVARCTTCQKAKSRLNPHGLYMPLP 99
Score = 26.9 bits (58), Expect(2) = 1e-23
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
P P D+SMDF++ LP+T
Sbjct: 101 PSIPWADISMDFVLGLPRT 119
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 103 bits (258), Expect(2) = 2e-23
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = -2
Query: 306 DGFLFKGSRLCIPKCSIRTLLIQEAHGGGLAGHMGIQKTLELLQAHFYWPRMLAHVYQVV 127
DGFLFK ++LC+PKCSIR LL+ E+H GGL GH G+QKTLE+LQ HF+WP M V++
Sbjct: 773 DGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFFWPHMRRDVHKFC 832
Query: 126 ARCSTCQRAKMTFH-KGEYKPLP 61
C C++AK G Y PLP
Sbjct: 833 GHCIVCKQAKSKVKPHGLYTPLP 855
Score = 30.4 bits (67), Expect(2) = 2e-23
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 59 PERP*EDLSMDFIMALPKT 3
PE P D+SMDF++ LPKT
Sbjct: 857 PEYPWTDISMDFVLGLPKT 875