BLASTX nr result
ID: Achyranthes23_contig00049980
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00049980
(304 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 45 3e-09
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 46 5e-09
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 48 1e-08
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 47 3e-08
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 39 4e-08
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 46 7e-08
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 39 9e-08
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 46 2e-07
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 43 2e-07
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 45 3e-07
pir||S23320 hypothetical protein 3 - Arabidopsis thaliana retrot... 41 3e-07
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 44 4e-07
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 45 9e-07
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 45 2e-06
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 45 2e-06
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 45 2e-06
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 45 2e-06
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 34 2e-06
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 40 8e-06
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 42 1e-05
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 45.4 bits (106), Expect(3) = 3e-09
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
GF DSDY DL+ TG+VF +G +S +SSL V+ALS TEA+ +L
Sbjct: 1054 GFSDSDYATDLDRRRSVTGYVFKVGGNTISWKSSLQSVVALSTTEAEYMAL 1104
Score = 34.7 bits (78), Expect(3) = 3e-09
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ E+M LTEA KEA WLKGL
Sbjct: 1096 TTEAEYMALTEAVKEAIWLKGL 1117
Score = 25.8 bits (55), Expect(3) = 3e-09
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
+KG+ +L K ++V V CDS+SA+ L
Sbjct: 1114 LKGLCSELGFKQDNVMVHCDSQSALAL 1140
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 45.8 bits (107), Expect(3) = 5e-09
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CDSDY DL+ +G+VFT+G VS +++L V ALS TEA+ +L
Sbjct: 435 GYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMAL 485
Score = 35.0 bits (79), Expect(3) = 5e-09
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ EFM LTEA KEA W+KGL
Sbjct: 477 TTEAEFMALTEAAKEALWIKGL 498
Score = 24.3 bits (51), Expect(3) = 5e-09
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
+KG++ L + + V ++CDS+SAI L
Sbjct: 495 IKGLMKDLGLEQDKVTLWCDSQSAICL 521
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 47.8 bits (112), Expect(3) = 1e-08
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CDSDY DL+ TGFVFT G +S +S L V+ALS TEA+ +L
Sbjct: 1191 GYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMAL 1241
Score = 31.6 bits (70), Expect(3) = 1e-08
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ E+M L EA KEA WL+GL
Sbjct: 1233 TTEAEYMALAEAVKEAIWLRGL 1254
Score = 24.6 bits (52), Expect(3) = 1e-08
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
++G+ ++ + ++V+V CDS+SAI L
Sbjct: 1251 LRGLAAEMGFEQDAVEVMCDSQSAIAL 1277
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 47.0 bits (110), Expect(3) = 3e-08
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLET-----GFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CDSDYG + +T G+VFT+G +S +S L V+A+S TEA+ +L
Sbjct: 1184 GYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMAL 1234
Score = 34.7 bits (78), Expect(3) = 3e-08
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKG 183
ST+ E+M LTEA KEA WLKG
Sbjct: 1226 STEAEYMALTEAVKEALWLKG 1246
Score = 20.8 bits (42), Expect(3) = 3e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
+KG +L + V+V DS+SAI L
Sbjct: 1244 LKGFAAELGHSQDYVEVHSDSQSAITL 1270
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 38.5 bits (88), Expect(3) = 4e-08
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLET-----GFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
GF D+DY G+++T G+VFT VS +++L V+ALS TEA+
Sbjct: 1057 GFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAE 1103
Score = 33.1 bits (74), Expect(3) = 4e-08
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ E+M +TEA KEA WLKG+
Sbjct: 1099 TTEAEYMAMTEAVKEAIWLKGI 1120
Score = 30.4 bits (67), Expect(3) = 4e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL*ESKHF 272
+KG+ +L V V+CD++SAIHL +++ F
Sbjct: 1117 LKGITEELAMYRGKVVVYCDNQSAIHLAKNQSF 1149
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 45.8 bits (107), Expect(3) = 7e-08
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+CDSD+ GD + TG+ FT+G +VS +S L V+ALS TEA+
Sbjct: 687 GYCDSDHSGDRDRSRSTTGYTFTVGGNIVSWRSCLQPVVALSSTEAE 733
Score = 31.6 bits (70), Expect(3) = 7e-08
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
ST+ E++ LTEA KEA WLK L
Sbjct: 729 STEAEYIALTEAAKEAYWLKDL 750
Score = 23.9 bits (50), Expect(3) = 7e-08
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
+K ++ +L K +V + CDS+SAI L
Sbjct: 747 LKDLMNELGFKQGAVDIHCDSQSAIAL 773
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 39.3 bits (90), Expect(3) = 9e-08
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLET-----GFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
GF D+DY G+++T G+VFT+ VS +++L V+ALS TEA+
Sbjct: 584 GFVDADYPGNIDTRKSLIGYVFTVFGGAVSWKANLQSVVALSATEAE 630
Score = 31.6 bits (70), Expect(3) = 9e-08
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL*ESKHF 272
+KG++ +L V V+CD++SAIHL +++ F
Sbjct: 644 LKGIIEELAMYKGKVVVYCDNQSAIHLAKNQSF 676
Score = 30.0 bits (66), Expect(3) = 9e-08
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ E+M +TE KE WLKG+
Sbjct: 626 ATEAEYMAMTEVVKEVIWLKGI 647
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CDSDY DL+ +G+VFT+G VS +++L V ALS TEA+ +L
Sbjct: 1211 GYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMAL 1261
Score = 35.0 bits (79), Expect(2) = 2e-07
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ EFM LTEA KEA W+KGL
Sbjct: 1253 TTEAEFMALTEAAKEALWIKGL 1274
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 43.1 bits (100), Expect(2) = 2e-07
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CD+DY DL+ TG VFT+G +S +S L V+A S TE + SL
Sbjct: 1212 GYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYMSL 1262
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 22/56 (39%), Positives = 27/56 (48%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
ST+ E+M+LTEA KEA WLKGL F ++ N H RTK
Sbjct: 1254 STECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTK 1309
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 45.4 bits (106), Expect(2) = 3e-07
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+CDSD+ DL+ +G+VFT+G VS +SSL V+ALS T+A+
Sbjct: 1158 GYCDSDHAADLDKRRSISGYVFTVGGNTVSWKSSLQHVVALSSTQAE 1204
Score = 34.3 bits (77), Expect(2) = 3e-07
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
ST+ EF+ LTEA KEA W++GL + + ++ N FH RTK
Sbjct: 1200 STQAEFIALTEAVKEAIWIRGLLEDMGLQPKPATVWCDSQSAICLSKNNAFHDRTK 1255
>pir||S23320 hypothetical protein 3 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|1345515|emb|CAA37925.1|
unnamed protein product [Arabidopsis thaliana]
Length = 154
Score = 41.2 bits (95), Expect(3) = 3e-07
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Frame = +2
Query: 5 FCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
+CDSDY DL+ +G+VF +G VS +++L V ALS TEA+ +L
Sbjct: 26 YCDSDYAADLDRRRSVSGYVFIVGGNTVSWKANLQSVTALSTTEAEFMAL 75
Score = 33.5 bits (75), Expect(3) = 3e-07
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
+T+ EFM LTE KEA W+KGL
Sbjct: 67 TTEAEFMALTEVAKEALWIKGL 88
Score = 24.3 bits (51), Expect(3) = 3e-07
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
+KG++ L + + V ++CDS+SAI L
Sbjct: 85 IKGLMKDLGLEQDKVTLWCDSQSAICL 111
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 43.9 bits (102), Expect(2) = 4e-07
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CD+DY DL+ TG VFT+G +S +S L V+A S TE++ SL
Sbjct: 1205 GYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSL 1255
Score = 35.4 bits (80), Expect(2) = 4e-07
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
+T+ E+M+LTEA KEA WLKGL F ++ N H RTK
Sbjct: 1247 TTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTK 1302
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 45.4 bits (106), Expect(2) = 9e-07
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+CDS+Y DL+ +G+VFTIG VS ++SL V+A+S TEA+
Sbjct: 1204 GYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAE 1250
Score = 32.7 bits (73), Expect(2) = 9e-07
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
+T+ E++ L EA KEA W+KGL + + + + ++ + +H RTK
Sbjct: 1246 TTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTK 1301
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+ DSDY DL+ TG+VFTIG VS +++L V+ALS TEA+
Sbjct: 1183 GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229
Score = 32.0 bits (71), Expect(2) = 2e-06
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL--*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
+T+ E+M + EA KE WLKGL +S V+ I C +++ K+Q FH RTK
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC-DSESAIYLTKDQ-MFHERTK 1280
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+ DSDY DL+ TG+VFTIG VS +++L V+ALS TEA+
Sbjct: 1185 GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1231
Score = 32.0 bits (71), Expect(2) = 2e-06
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL--*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
+T+ E+M + EA KE WLKGL +S V+ I C +++ K+Q FH RTK
Sbjct: 1227 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC-DSQSAIYLTKDQ-MFHERTK 1282
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+ DSDY DL+ TG+VFTIG VS +++L V+ALS TEA+
Sbjct: 1183 GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229
Score = 32.0 bits (71), Expect(2) = 2e-06
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL--*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
+T+ E+M + EA KE WLKGL +S V+ I C +++ K+Q FH RTK
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC-DSQSAIYLTKDQ-MFHERTK 1280
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+ DSDY DL+ TG+VFTIG VS +++L V+ALS TEA+
Sbjct: 1183 GYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229
Score = 32.0 bits (71), Expect(2) = 2e-06
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL--*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
+T+ E+M + EA KE WLKGL +S V+ I C +++ K+Q FH RTK
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC-DSQSAIYLTKDQ-MFHERTK 1280
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 34.3 bits (77), Expect(3) = 2e-06
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
GF DSD+ GDL+ + ++F + L+S +SSL ALS TEA+
Sbjct: 1181 GFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAE 1227
Score = 33.1 bits (74), Expect(3) = 2e-06
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL 186
ST+ EF+ TEA KEA WL+GL
Sbjct: 1223 STEAEFIATTEAVKEAMWLRGL 1244
Score = 28.5 bits (62), Expect(3) = 2e-06
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 174 VKGVVGKLCPKMNSVKVFCDSKSAIHL 254
++G++ +L V+VFCD+++AIHL
Sbjct: 1241 LRGLLNELWLNQKIVQVFCDNQNAIHL 1267
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 39.7 bits (91), Expect(2) = 8e-06
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQKWSL 139
G+CDSDY +LE +G VFT+G + ++ +S L V+ +S T+A SL
Sbjct: 1079 GYCDSDYAANLENRRSISGMVFTLGGSTINLRSCLQKVVVMSSTKAGYMSL 1129
Score = 35.4 bits (80), Expect(2) = 8e-06
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRRTK 288
STK +M+LTEA KEA WLKGL F ++ N H RTK
Sbjct: 1121 STKAGYMSLTEAVKEAIWLKGLLQDFGYEQKTVEIFCDSQSAIALSKNNVHHDRTK 1176
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 42.0 bits (97), Expect(2) = 1e-05
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Frame = +2
Query: 2 GFCDSDYGGDLE-----TGFVFTIGDTLVS*QSSL*DVIALSITEAQ 127
G+ DSD+ GDL T +VFTIG VS ++SL ++ALS TEA+
Sbjct: 1020 GYVDSDFAGDLNRRRSLTDYVFTIGGCAVSWKTSLQAIVALSTTEAE 1066
Score = 32.7 bits (73), Expect(2) = 1e-05
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +1
Query: 121 STKVEFMTLTEAFKEAKWLKGL------*VSCVQR*IR*RCFVIARVLFIFKNQNTFHRR 282
+T+ E+M ++EA KEA WL+GL +SC+ F ++ FH R
Sbjct: 1062 TTEAEYMAISEACKEAIWLRGLYTELCGVMSCI------NIFCNSQSAICLTKDQMFHER 1115
Query: 283 TK 288
TK
Sbjct: 1116 TK 1117