BLASTX nr result

ID: Achyranthes23_contig00049878 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00049878
         (207 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF97065.1| retrotransposon protein, putative, Ty1-copia subc...    57   3e-06
emb|CAN68365.1| hypothetical protein VITISV_018176 [Vitis vinifera]    56   6e-06
gb|ABA93936.1| retrotransposon protein, putative, unclassified, ...    55   7e-06
gb|ABA97697.1| retrotransposon protein, putative, unclassified [...    55   1e-05
emb|CAN69069.1| hypothetical protein VITISV_007586 [Vitis vinifera]    55   1e-05

>gb|ABF97065.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1907

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 14/71 (19%)
 Frame = +3

Query: 6    IHQQKYTKELLKKYNIEGSKVYHTPIQTNVKLDLDEE--------------GYADADYAT 143
            I Q KY K++LKK+ +E +K  HTP+ +N  LDL+E+              GYADADYA 
Sbjct: 1293 ICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKGARFDLIGYADADYAG 1352

Query: 144  ILVDQLST*GT 176
              VD+ ST GT
Sbjct: 1353 CKVDRKSTSGT 1363


>emb|CAN68365.1| hypothetical protein VITISV_018176 [Vitis vinifera]
          Length = 423

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 15/73 (20%)
 Frame = +3

Query: 6   IHQQKYTKELLKKYNIEGSKVYHTPIQTNVKLDLDEE---------------GYADADYA 140
           I+Q+KYT++LLK++N+E +K   TPI +++KLD DE+               G++DAD+A
Sbjct: 24  INQEKYTRDLLKRFNMEYAKTMKTPISSSIKLDKDEKYIGLWYPKSDNFELIGFSDADFA 83

Query: 141 TILVDQLST*GTH 179
              V++ +T GT+
Sbjct: 84  XCRVERKNTSGTY 96


>gb|ABA93936.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1533

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 14/71 (19%)
 Frame = +3

Query: 6    IHQQKYTKELLKKYNIEGSKVYHTPIQTNVKLDLDEE--------------GYADADYAT 143
            I Q KY K++LKK+ +E +K   TPI TN  LDLDE               GY+D+DYA 
Sbjct: 1327 ISQTKYVKDILKKFGMEDTKPIKTPIPTNGHLDLDENGKCVDQKGCDFELLGYSDSDYAG 1386

Query: 144  ILVDQLST*GT 176
              VD+ ST GT
Sbjct: 1387 CKVDRKSTTGT 1397


>gb|ABA97697.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1639

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
 Frame = +3

Query: 6    IHQQKYTKELLKKYNIEGSKVYHTPIQTNVKLDLDEE---------GYADADYATILVDQ 158
            I Q KY K++LKK+ +E +K   TP+ TN  LDLD+          GY+D+DYA   VD+
Sbjct: 1438 ISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNGKCVDQKLLGYSDSDYAGCKVDR 1497

Query: 159  LST*GT 176
             ST GT
Sbjct: 1498 KSTTGT 1503


>emb|CAN69069.1| hypothetical protein VITISV_007586 [Vitis vinifera]
          Length = 483

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 26/57 (45%), Positives = 43/57 (75%)
 Frame = +3

Query: 6   IHQQKYTKELLKKYNIEGSKVYHTPIQTNVKLDLDEEGYADADYATILVDQLST*GT 176
           I+Q KY ++LLK++N+E +K   TP+ +++KLD+DE+   DAD+A+  V++ ST GT
Sbjct: 73  INQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDMDEK---DADFASCKVERKSTSGT 126


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