BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00048427
         (520 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...   179   3e-43
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   167   2e-39
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   165   5e-39
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   165   7e-39
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   164   1e-38
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         164   1e-38
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   162   3e-38
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   162   3e-38
emb|CBI27412.3| unnamed protein product [Vitis vinifera]              161   1e-37
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   161   1e-37
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...   160   1e-37
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   154   1e-35
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   154   1e-35
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   154   1e-35
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   152   3e-35
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   152   4e-35
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   150   1e-34
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm...   150   2e-34
gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]        149   3e-34
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   149   3e-34

>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Chenopodium album]
          Length = 988

 Score =  179 bits (455), Expect = 3e-43
 Identities = 97/175 (55%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLN--GEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PLK AI+A Q+    G  +     CFD+LPADMM VITMHK            
Sbjct: 195 LFLGWFEPLKDAIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNG 254

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXXVTNLIKKQ 354
                QAA+QIGEA+EQE KI++FLEKSK+                      VT L+KKQ
Sbjct: 255 GTTVIQAATQIGEAVEQEAKIRKFLEKSKKKPATNNNDEDDSAKAQQRLAKKVTTLMKKQ 314

Query: 355 NVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
            + QVR+IV G DDSKPW QDNQVKVGCKLI LL ETAYIQPP DQ ADGP DIR
Sbjct: 315 KISQVREIVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIR 369


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris]
          Length = 1002

 Score =  167 bits (422), Expect = 2e-39
 Identities = 95/178 (53%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI AEQKL   G+ +  C P FDQLPA+MM VITMHK            
Sbjct: 210 LFLGWFEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTG 269

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRN---SXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAAS IGEAIE E +I RFLEK+K++   S                    V  L+
Sbjct: 270 SARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILM 329

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ +QQVRKIV   DD KPWGQDN VKVGC+LI +L ETAYIQPP DQ  D P DIR
Sbjct: 330 KKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIR 387


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
           [Solanum lycopersicum]
          Length = 993

 Score =  165 bits (418), Expect = 5e-39
 Identities = 95/177 (53%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PLK AI AEQKL   G+ +    P FDQLPA+MM VITMHK            
Sbjct: 202 LFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSG 261

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX--VTNLIK 348
                QAAS IGEAIE E +I RFLEK+K+N+                      V  L+K
Sbjct: 262 SARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEETAGDIMKERERLRKKVKILMK 321

Query: 349 KQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KQ +QQVRKIV   DD KPWGQDN VKVGC+LI +L ETAYIQPP DQ  D P DIR
Sbjct: 322 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIR 378


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
           [Solanum tuberosum]
          Length = 993

 Score =  165 bits (417), Expect = 7e-39
 Identities = 95/177 (53%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI AEQKL   G+ +    P FDQLPA+MM VITMHK            
Sbjct: 202 LFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSG 261

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX--VTNLIK 348
                QAAS IGEAIE E +I RFLEK+K+N+                      V  L+K
Sbjct: 262 SARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLEETAGDIMKERERLRKKVKILMK 321

Query: 349 KQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KQ +QQVRKIV   DD KPWGQDN VKVGCKLI +L ETAYIQPP DQ  D P DIR
Sbjct: 322 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIR 378


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial;
           AltName: Full=NictaRpoT1-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 1B;
           Flags: Precursor
          Length = 1002

 Score =  164 bits (415), Expect = 1e-38
 Identities = 94/178 (52%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI AEQKL   G+ +    P FDQLPA+MM VITMHK            
Sbjct: 210 LFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTG 269

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRN---SXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAAS IGEAIE E +I RFLEK+K++   S                    V  L+
Sbjct: 270 SARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILM 329

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ ++QVRKIV   DD KPWGQDN VKVGC+LI +L ETAYIQPP DQ  DGP DIR
Sbjct: 330 KKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIR 387


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  164 bits (415), Expect = 1e-38
 Identities = 94/178 (52%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI AEQKL   G+ +    P FDQLPA+MM VITMHK            
Sbjct: 210 LFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTG 269

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRN---SXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAAS IGEAIE E +I RFLEK+K++   S                    V  L+
Sbjct: 270 SARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILM 329

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ ++QVRKIV   DD KPWGQDN VKVGC+LI +L ETAYIQPP DQ  DGP DIR
Sbjct: 330 KKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIR 387


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  162 bits (411), Expect = 3e-38
 Identities = 94/178 (52%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI AEQKL   G+ +    P FDQLPA+MM VITMHK            
Sbjct: 210 LFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTG 269

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRN---SXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAAS IGEAIE E +I RFLEK+K++   S                    V  L+
Sbjct: 270 SARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERLRKKVKILM 329

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ +QQVRKIV   DD KPWGQDN VKVGC+LI +L ETAYIQPP DQ  D P DIR
Sbjct: 330 KKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIR 387


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
           AltName: Full=NsRpoT-A; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 1;
           Flags: Precursor gi|15824083|dbj|BAB69431.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1002

 Score =  162 bits (411), Expect = 3e-38
 Identities = 94/178 (52%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI AEQKL   G+ +    P FDQLPA+MM VITMHK            
Sbjct: 210 LFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTG 269

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRN---SXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAAS IGEAIE E +I RFLEK+K++   S                    V  L+
Sbjct: 270 SARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILM 329

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ +QQVRKIV   DD KPWGQDN VKVGC+LI +L ETAYIQPP DQ  D P DIR
Sbjct: 330 KKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIR 387


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  161 bits (407), Expect = 1e-37
 Identities = 92/178 (51%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I AEQ L   G+ +    P FD LPADMM VITMHK            
Sbjct: 16  LFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNG 75

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKR---NSXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAA  IGEAIE EV+IQRF+EK+K+   +S                    V+ L+
Sbjct: 76  SARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLM 135

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ +QQVR+IV   DDSKPWGQD  VKVG +LI LL ETAYIQPP DQ  DGP DIR
Sbjct: 136 KKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIR 193


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  161 bits (407), Expect = 1e-37
 Identities = 92/178 (51%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I AEQ L   G+ +    P FD LPADMM VITMHK            
Sbjct: 184 LFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNG 243

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKR---NSXXXXXXXXXXXXXXXXXXXXVTNLI 345
                QAA  IGEAIE EV+IQRF+EK+K+   +S                    V+ L+
Sbjct: 244 SARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLM 303

Query: 346 KKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           KKQ +QQVR+IV   DDSKPWGQD  VKVG +LI LL ETAYIQPP DQ  DGP DIR
Sbjct: 304 KKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIR 361


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
           gi|548846502|gb|ERN05778.1| hypothetical protein
           AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score =  160 bits (406), Expect = 1e-37
 Identities = 93/179 (51%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLN--GEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I +EQ     G+ K    P F QLPADMM+VITMHK            
Sbjct: 211 LFLGWFEPLRDIIASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLLMTGTDNG 270

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX----VTNL 342
                QAA QIGEAIEQEVKI RF EK+K+ S                        VTNL
Sbjct: 271 STRLVQAACQIGEAIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESLRKRVTNL 330

Query: 343 IKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           +KKQ + QVRKIV G DD+KPWG D   KVG +LI LL ETAY+QPP+DQSA+GP DIR
Sbjct: 331 MKKQKLHQVRKIVKGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIR 389


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
           gi|48716846|dbj|BAD23544.1| putative phage-type RNA
           polymerase [Oryza sativa Japonica Group]
           gi|215694941|dbj|BAG90132.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 951

 Score =  154 bits (389), Expect = 1e-35
 Identities = 89/180 (49%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLNGEKKVDCTPC--FDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I AEQ+L GE+    +    F+ LPADMM VITMHK            
Sbjct: 221 LFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG 280

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX-----VTN 339
                QAA QIGEAIE EV+I +FLEK+K+ S                         VT+
Sbjct: 281 SVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTD 340

Query: 340 LIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           L+KKQ ++QVR IV   D+SKPWGQD   KVG +LI L+ ETAYIQPP  QSADGP DIR
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score =  154 bits (389), Expect = 1e-35
 Identities = 89/180 (49%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLNGEKKVDCTPC--FDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I AEQ+L GE+    +    F+ LPADMM VITMHK            
Sbjct: 221 LFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG 280

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX-----VTN 339
                QAA QIGEAIE EV+I +FLEK+K+ S                         VT+
Sbjct: 281 SVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTD 340

Query: 340 LIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           L+KKQ ++QVR IV   D+SKPWGQD   KVG +LI L+ ETAYIQPP  QSADGP DIR
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  154 bits (389), Expect = 1e-35
 Identities = 89/180 (49%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLNGEKKVDCTPC--FDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I AEQ+L GE+    +    F+ LPADMM VITMHK            
Sbjct: 187 LFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG 246

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX-----VTN 339
                QAA QIGEAIE EV+I +FLEK+K+ S                         VT+
Sbjct: 247 SVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTD 306

Query: 340 LIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           L+KKQ ++QVR IV   D+SKPWGQD   KVG +LI L+ ETAYIQPP  QSADGP DIR
Sbjct: 307 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 366


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
           putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
           DNA-directed RNA polymerase 2, chloroplast/mitochondrial
           precursor, putative [Ricinus communis]
          Length = 997

 Score =  152 bits (385), Expect = 3e-35
 Identities = 91/188 (48%), Positives = 106/188 (56%), Gaps = 15/188 (7%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLNGEK--KVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI  EQ+L+ EK  K+   P FD LPADMM VITMHK            
Sbjct: 193 LFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGN 252

Query: 175 XXXXX-QAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX------- 330
                 QAA  +GEAIE E +I RFLEK+K+                             
Sbjct: 253 GSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQE 312

Query: 331 -----VTNLIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQS 495
                VT L+KKQ VQQVR +  GHDDS PWGQ+ QVKVGC+LI LL ETAYIQPP++Q 
Sbjct: 313 KLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQL 372

Query: 496 ADGPLDIR 519
            DG  DIR
Sbjct: 373 GDGLPDIR 380


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
           gi|550332836|gb|EEE88785.2| hypothetical protein
           POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  152 bits (384), Expect = 4e-35
 Identities = 91/186 (48%), Positives = 106/186 (56%), Gaps = 13/186 (6%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL-NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXXX 177
           LFLGWF+PL+ AI AEQ+L     +V     F  LPADMM VITMHK             
Sbjct: 186 LFLGWFEPLRDAIVAEQELCKRNLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSA 245

Query: 178 XXXX-QAASQIGEAIEQEVKIQRFLEKSKRN-----------SXXXXXXXXXXXXXXXXX 321
                QAAS +GEAIE E +I +FLEK+K+            S                 
Sbjct: 246 SIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKL 305

Query: 322 XXXVTNLIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSAD 501
              VT LIKKQ VQQVR+IV GHDDS+PWGQ+  VKVG +LI L+ ETAYIQPP+DQ  D
Sbjct: 306 RKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGD 365

Query: 502 GPLDIR 519
           GP DIR
Sbjct: 366 GPPDIR 371


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  150 bits (380), Expect = 1e-34
 Identities = 89/181 (49%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLN--GEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+ AI  EQ+L   G+ K    P FDQLPADMM+VITMHK            
Sbjct: 238 LFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHG 297

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKR-----NSXXXXXXXXXXXXXXXXXXXXVTN 339
                QAA  IG+AIEQEV+I  FLEK+KR     +                     VTN
Sbjct: 298 STRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTN 357

Query: 340 LIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLD-QSADGPLDI 516
           L+KKQ +   R+IV GHD+SKPWG + + KVG +LI LL +TAYIQPP+D Q AD P DI
Sbjct: 358 LMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDI 417

Query: 517 R 519
           R
Sbjct: 418 R 418


>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
           gi|223526525|gb|EEF28787.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 395

 Score =  150 bits (378), Expect = 2e-34
 Identities = 90/180 (50%), Positives = 105/180 (58%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLN--GEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+P + AI  EQ+L   G+ +    P FDQLPADMM VITMHK            
Sbjct: 201 LFLGWFEPFRDAILKEQELIRVGKNRTAFAPYFDQLPADMMAVITMHKLVALVMTGGEHG 260

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSK-RNSXXXXXXXXXXXXXXXXXXXX----VTN 339
                 AA  IG AIEQEV+I +FLEK+K RNS                        VT+
Sbjct: 261 CARVVAAACLIGAAIEQEVRIHKFLEKTKKRNSNDSKKNEEDESNGAVKEQEKLRKKVTD 320

Query: 340 LIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           LIKKQ +  VR+IV GHDDS+ W QD + KVG +LI LL +TAYIQPP DQ ADGP DIR
Sbjct: 321 LIKKQKLPAVRQIVKGHDDSQSWTQDTKAKVGSRLIELLIQTAYIQPPADQLADGPPDIR 380


>gb|EXB44918.1| DNA-directed RNA polymerase 1 [Morus notabilis]
          Length = 1023

 Score =  149 bits (377), Expect = 3e-34
 Identities = 92/188 (48%), Positives = 106/188 (56%), Gaps = 15/188 (7%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKLNGEKKVDCT--PCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           L LGWF+PL+ AI A+Q+   E K   T  P FD LPAD+M VI MHK            
Sbjct: 196 LLLGWFEPLRDAIAADQEACREMKNKPTYAPYFDHLPADVMAVIAMHKLMGLMMTNSGIV 255

Query: 175 XXXXX-QAASQIGEAIEQEVKIQRFLEKSKR------------NSXXXXXXXXXXXXXXX 315
                 QAASQIGEA+E EVKIQRF EK+K+            +                
Sbjct: 256 GCIRVVQAASQIGEALEHEVKIQRFFEKTKKKKKKKNTNGEDVSDVVSAEQGNLNGKGQE 315

Query: 316 XXXXXVTNLIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQS 495
                VT +IKKQ VQQVR IV+  DDSKPWGQ+  VKVGC+LI LL ETAYIQPP+DQ 
Sbjct: 316 KLRKKVTQMIKKQKVQQVRIIVDRVDDSKPWGQEGHVKVGCRLIQLLMETAYIQPPVDQL 375

Query: 496 ADGPLDIR 519
            D P DIR
Sbjct: 376 DDSPPDIR 383


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Setaria italica]
          Length = 1005

 Score =  149 bits (377), Expect = 3e-34
 Identities = 87/180 (48%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1   LFLGWFDPLKVAIEAEQKL--NGEKKVDCTPCFDQLPADMMTVITMHKXXXXXXXXXXXX 174
           LFLGWF+PL+  I AEQ+L  N   +    P F+ LPADMM VITMHK            
Sbjct: 209 LFLGWFEPLRDQIAAEQELVANRGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDG 268

Query: 175 XXXXXQAASQIGEAIEQEVKIQRFLEKSKRNSXXXXXXXXXXXXXXXXXXXX-----VTN 339
                QAA QIGEAIE EV+I RFLEK+++ S                         VT+
Sbjct: 269 SVRVIQAACQIGEAIEHEVRIHRFLEKTRKKSNKEKENEEEIFDSDIAKEQQRLRKKVTD 328

Query: 340 LIKKQNVQQVRKIVNGHDDSKPWGQDNQVKVGCKLIHLLTETAYIQPPLDQSADGPLDIR 519
           L+KKQ ++QVRKIV   DDS+PWGQD   KVG +LI L  ETA+IQPP  QS+DG  DIR
Sbjct: 329 LMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPDIR 388