BLASTX nr result
ID: Achyranthes23_contig00048155
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00048155
(570 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 142 5e-44
ref|XP_004237696.1| PREDICTED: uncharacterized protein LOC101247... 142 3e-43
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera] 136 3e-42
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 130 7e-42
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 129 9e-42
gb|ABW74566.1| integrase [Boechera divaricarpa] 127 3e-39
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle... 134 1e-38
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle... 134 1e-38
gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis c... 133 1e-38
gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halle... 132 2e-38
gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halle... 133 2e-38
gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halle... 134 3e-38
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 134 3e-38
gb|AFK88551.1| reverse transcriptase, partial [Arabidopsis halle... 130 3e-38
gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halle... 132 5e-38
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle... 132 6e-38
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus] 132 7e-38
gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halle... 132 7e-38
gb|AGH20681.1| reverse transcriptase, partial [Raphanus sativus] 132 1e-37
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 132 1e-37
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 142 bits (357), Expect(3) = 5e-44
Identities = 67/90 (74%), Positives = 80/90 (88%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQQQ VDFDETFSP+A FETVR +ALAAQL P++QFDVK AFLNG+L EEVYV
Sbjct: 885 AKGYSQQQGVDFDETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVS 944
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+G+++TG E+KVYKL+KALYG+K+APRA
Sbjct: 945 QPQGFMITGNENKVYKLRKALYGLKQAPRA 974
Score = 56.2 bits (134), Expect(3) = 5e-44
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Frame = +2
Query: 53 QWKRSY----QQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+WK + Q +++N TW+LV P KNV GLK V+RTKY++ G IQK KAR
Sbjct: 830 EWKNAMIEEIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNADGSIQKHKAR 882
Score = 26.6 bits (57), Expect(3) = 5e-44
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAWYSKID++
Sbjct: 972 PRAWYSKIDSF 982
>ref|XP_004237696.1| PREDICTED: uncharacterized protein LOC101247717 [Solanum
lycopersicum]
Length = 527
Score = 142 bits (358), Expect(3) = 3e-43
Identities = 67/90 (74%), Positives = 79/90 (87%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQQQ +DFDETFSP+A FETVRTF+ALAA L WP++QFDVK AFLNG+L EEVYV
Sbjct: 429 AKGYSQQQGIDFDETFSPVARFETVRTFLALAANLNWPMYQFDVKSAFLNGDLEEEVYVS 488
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QPEG++V +EDKVY LKKAL G+K+AP+A
Sbjct: 489 QPEGFVVNDKEDKVYMLKKALDGLKQAPQA 518
Score = 55.5 bits (132), Expect(3) = 3e-43
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Frame = +2
Query: 53 QWKRSYQQ----LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+W +S ++ ++KNQTWD V+LP K GLK V+RTKY + G IQK KAR
Sbjct: 374 KWCKSMEEELLAIQKNQTWDFVNLPEGKKAIGLKWVFRTKYHADGSIQKHKAR 426
Score = 24.3 bits (51), Expect(3) = 3e-43
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
P+AWY KID+Y
Sbjct: 516 PQAWYFKIDSY 526
>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
Length = 1109
Score = 136 bits (343), Expect(3) = 3e-42
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGY+QQ VD+D+TFSPIALFETVRT +ALAA + W ++QFDVK AFLNGEL EEVYV
Sbjct: 746 AKGYAQQHGVDYDDTFSPIALFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEVYVS 805
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QPEG+IV G+E+ VY+LKK L+G+K+APRA
Sbjct: 806 QPEGFIVPGKEEHVYRLKKTLFGLKQAPRA 835
Score = 51.2 bits (121), Expect(3) = 3e-42
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +2
Query: 59 KRSYQQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
K ++KN+TW+LV L +KNV G+K V+RTKY + G IQK KA+
Sbjct: 697 KEEIAAIEKNETWELVELLEDKNVIGVKWVFRTKYLADGSIQKHKAQ 743
Score = 30.8 bits (68), Expect(3) = 3e-42
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 469 PRAWYSKIDAYMLHN 513
PRAWYSKID+Y + N
Sbjct: 833 PRAWYSKIDSYFVEN 847
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 130 bits (326), Expect(3) = 7e-42
Identities = 61/90 (67%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGY+QQ VD+D+TFSP+A FETVRT +ALAA + W ++QFDVK AFLNGEL EEVY
Sbjct: 985 AKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEVYXS 1044
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QPEG+IV +E+ VY+LK ALYG+K+APRA
Sbjct: 1045 QPEGFIVPDKEEHVYRLKXALYGLKQAPRA 1074
Score = 56.6 bits (135), Expect(3) = 7e-42
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2
Query: 59 KRSYQQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
K ++KN+TW+LV LP +KNV G+K V+RTKY + G IQK KAR
Sbjct: 936 KEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKAR 982
Score = 30.8 bits (68), Expect(3) = 7e-42
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 469 PRAWYSKIDAYMLHN 513
PRAWYSKID+Y + N
Sbjct: 1072 PRAWYSKIDSYFVEN 1086
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 129 bits (325), Expect(3) = 9e-42
Identities = 62/90 (68%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGY+QQ VD+D+TFSP+A FETVRT +ALAA + W +QFDVK AFLNGEL EEVYV
Sbjct: 814 AKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCXYQFDVKSAFLNGELVEEVYVS 873
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
Q EG+IV +E+ VY+LKKALYG+K+APRA
Sbjct: 874 QXEGFIVPXKEEHVYRLKKALYGLKQAPRA 903
Score = 56.6 bits (135), Expect(3) = 9e-42
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +2
Query: 59 KRSYQQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
K ++KN+TW+LV LP +KNV G+K V+RTKY + G IQK KAR
Sbjct: 765 KEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKAR 811
Score = 30.8 bits (68), Expect(3) = 9e-42
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 469 PRAWYSKIDAYMLHN 513
PRAWYSKID+Y + N
Sbjct: 901 PRAWYSKIDSYFVEN 915
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 127 bits (318), Expect(3) = 3e-39
Identities = 59/89 (66%), Positives = 74/89 (83%)
Frame = +3
Query: 204 KGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVVQ 383
KGY+Q+ VD+++TFSP+A F+T+RT +AL A + WPI+QFDVK AFLNGEL EEVYV Q
Sbjct: 717 KGYAQEYGVDYEKTFSPVARFDTLRTLLALGAYMHWPIYQFDVKSAFLNGELREEVYVDQ 776
Query: 384 PEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
PEG+IV G E VY+L KALYG+K+APRA
Sbjct: 777 PEGFIVEGREGFVYRLYKALYGLKQAPRA 805
Score = 54.7 bits (130), Expect(3) = 3e-39
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
Frame = +2
Query: 53 QWKRSYQQ----LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+W+++ ++ ++KNQTW LV LP EK+ G+K V++TKY + IQK+KAR
Sbjct: 661 EWRKAMEEEIASIEKNQTWQLVELPEEKHSIGVKWVFKTKYQADDNIQKYKAR 713
Score = 26.9 bits (58), Expect(3) = 3e-39
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAWY+KID+Y
Sbjct: 803 PRAWYNKIDSY 813
>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 134 bits (336), Expect(3) = 1e-38
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.8 bits (120), Expect(3) = 1e-38
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+KKN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 22 IKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 1e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera] gi|389595484|gb|AFK88545.1| reverse
transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 134 bits (336), Expect(3) = 1e-38
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.8 bits (120), Expect(3) = 1e-38
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+KKN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 22 IKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 1e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 286
Score = 133 bits (334), Expect(3) = 1e-38
Identities = 62/90 (68%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ +W IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNEWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYI+ GEEDKV KLKKALYG+K+APRA
Sbjct: 125 QPQGYIIKGEEDKVLKLKKALYGLKQAPRA 154
Score = 51.6 bits (122), Expect(3) = 1e-38
Identities = 21/41 (51%), Positives = 32/41 (78%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
++KN TW+LVSLP + G+K VY+ K +SKGE++++KAR
Sbjct: 22 IQKNDTWELVSLPNGQKAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 1e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 132 bits (332), Expect(3) = 2e-38
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK FLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSTFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 52.0 bits (123), Expect(3) = 2e-38
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Frame = +2
Query: 56 WKRSYQQ----LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
W+ S + +KKN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 11 WRNSMDEDIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 2e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 133 bits (334), Expect(3) = 2e-38
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIILLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.8 bits (120), Expect(3) = 2e-38
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+KKN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 22 IKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 2e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 134 bits (336), Expect(2) = 3e-38
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.8 bits (120), Expect(2) = 3e-38
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+KKN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 22 IKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 134 bits (336), Expect(3) = 3e-38
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 872 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 931
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 932 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 961
Score = 49.7 bits (117), Expect(3) = 3e-38
Identities = 20/43 (46%), Positives = 31/43 (72%)
Frame = +2
Query: 71 QQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+ ++KN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 827 KSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 869
Score = 21.6 bits (44), Expect(3) = 3e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 959 PRAWNTRIDKY 969
>gb|AFK88551.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 130 bits (327), Expect(3) = 3e-38
Identities = 61/90 (67%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVACLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEE+KV +L KALYG+K+APRA
Sbjct: 125 QPQGYIVKGEENKVLRLNKALYGLKQAPRA 154
Score = 53.1 bits (126), Expect(3) = 3e-38
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+KKN TW+L SLP N G+K VY+ K +SKGE++++KAR
Sbjct: 22 IKKNDTWELASLPNGHNAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 3e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 132 bits (332), Expect(3) = 5e-38
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGY Q+ +D+DE F+PIA ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYCQRAGIDYDEVFAPIARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.4 bits (119), Expect(3) = 5e-38
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = +2
Query: 56 WKRSYQQ----LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
WK + + +KKN TW+L SLP G+K VY+ K +SKGE++++K R
Sbjct: 11 WKNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKGR 62
Score = 21.6 bits (44), Expect(3) = 5e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 132 bits (333), Expect(2) = 6e-38
Identities = 62/90 (68%), Positives = 75/90 (83%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APR+
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRS 154
Score = 50.8 bits (120), Expect(2) = 6e-38
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 77 LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+KKN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 22 IKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 132 bits (331), Expect(3) = 7e-38
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ W IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.4 bits (119), Expect(3) = 7e-38
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 29 QVVKFGRMQWKRSYQQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
Q K R + ++KN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 6 QEKKSWRSAMDEEIKSIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
Score = 21.6 bits (44), Expect(3) = 7e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 132 bits (331), Expect(3) = 7e-38
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGY Q+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYCQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.4 bits (119), Expect(3) = 7e-38
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = +2
Query: 56 WKRSYQQ----LKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
WK + + +KKN TW+L SLP G+K VY+ K +SKGE++++K R
Sbjct: 11 WKNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKGR 62
Score = 21.6 bits (44), Expect(3) = 7e-38
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 152 PRAWNTRIDKY 162
>gb|AGH20681.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 132 bits (332), Expect(2) = 1e-37
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ W IHQ DVK AFLNG+L EEVY+
Sbjct: 65 AKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQKSWKIHQMDVKSAFLNGDLEEEVYIE 124
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKKALYG+K+APRA
Sbjct: 125 QPQGYIVKGEEDKVLRLKKALYGLKQAPRA 154
Score = 50.4 bits (119), Expect(2) = 1e-37
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 29 QVVKFGRMQWKRSYQQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
Q K R + ++KN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 6 QEKKSWRSAMDEEIKSIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 62
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 132 bits (331), Expect(3) = 1e-37
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = +3
Query: 201 AKGYSQQQSVDFDETFSPIALFETVRTFIALAAQLKWPIHQFDVKYAFLNGELGEEVYVV 380
AKGYSQ+ +D+DE F+P+A ETVR I+LAAQ KW IHQ DVK AFLNG+L EEVY+
Sbjct: 904 AKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIE 963
Query: 381 QPEGYIVTGEEDKVYKLKKALYGMKKAPRA 470
QP+GYIV GEEDKV +LKK LYG+K+APRA
Sbjct: 964 QPQGYIVKGEEDKVLRLKKVLYGLKQAPRA 993
Score = 49.7 bits (117), Expect(3) = 1e-37
Identities = 20/43 (46%), Positives = 31/43 (72%)
Frame = +2
Query: 71 QQLKKNQTWDLVSLPGEKNVTGLK*VYRTKYDSKGEIQKFKAR 199
+ ++KN TW+L SLP G+K VY+ K +SKGE++++KAR
Sbjct: 859 KSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 901
Score = 21.6 bits (44), Expect(3) = 1e-37
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 469 PRAWYSKIDAY 501
PRAW ++ID Y
Sbjct: 991 PRAWNTRIDKY 1001