BLASTX nr result
ID: Achyranthes23_contig00040430
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00040430
(427 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76698.1| hypothetical protein VITISV_011792 [Vitis vinifera] 66 3e-30
emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera] 64 4e-30
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 73 6e-30
emb|CAN67886.1| hypothetical protein VITISV_042574 [Vitis vinifera] 69 1e-28
gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis c... 64 1e-28
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera] 63 2e-28
gb|AGH20678.1| reverse transcriptase, partial [Olimarabidopsis c... 67 2e-28
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera] 59 6e-28
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera] 72 7e-28
gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halle... 66 8e-28
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus] 64 8e-28
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera] 60 9e-28
gb|AGH20668.1| reverse transcriptase, partial [Arabis hirsuta] 64 1e-27
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle... 64 3e-27
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle... 64 3e-27
gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halle... 64 3e-27
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 64 4e-27
gb|AGH20680.1| reverse transcriptase, partial [Raphanus sativus] 64 6e-27
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle... 64 6e-27
gb|AGH20676.1| reverse transcriptase, partial [Olimarabidopsis c... 64 6e-27
>emb|CAN76698.1| hypothetical protein VITISV_011792 [Vitis vinifera]
Length = 1084
Score = 66.2 bits (160), Expect(4) = 3e-30
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +1
Query: 313 KGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
KG+ HKV KLKKALYGLKQAPRAWYS+I+ YF++ GF+
Sbjct: 732 KGEEHKVYKLKKALYGLKQAPRAWYSRIEAYFIKEGFE 769
Score = 62.4 bits (150), Expect(4) = 3e-30
Identities = 28/52 (53%), Positives = 38/52 (73%)
Frame = +3
Query: 156 KVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
+VF+PVAR++T+R + LA G V+Q DVKS F +GEL E V++ QPQGY
Sbjct: 678 EVFAPVARWDTIRMVIALAARNGWSVYQLDVKSAFLHGELNEAVFIEQPQGY 729
Score = 36.6 bits (83), Expect(4) = 3e-30
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI N WEL DLP+G IG+KWV + +
Sbjct: 621 AIEXNXTWELTDLPEGVKKIGVKWVFKTK 649
Score = 32.3 bits (72), Expect(4) = 3e-30
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N +G + KARLVA+GYAQQ G+
Sbjct: 651 NENGKVDKCKARLVAKGYAQQHGI 674
>emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]
Length = 1246
Score = 63.5 bits (153), Expect(4) = 4e-30
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +3
Query: 156 KVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
K+++PVAR +T+R + L G ++Q DVKS F NGEL E+VYV QP+GY
Sbjct: 830 KIYAPVARMDTVRMIVALTAQRGWTIYQLDVKSAFLNGELNEDVYVDQPKGY 881
Score = 62.4 bits (150), Expect(4) = 4e-30
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +1
Query: 313 KGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
KG HKV KL KALYGLKQAPRAW+S+I+ YF+ GFQ
Sbjct: 884 KGSEHKVYKLHKALYGLKQAPRAWFSRIEAYFISEGFQ 921
Score = 36.2 bits (82), Expect(4) = 4e-30
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 10 SAIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
++I +N+ W+L DLP G IG+KW+ + +
Sbjct: 772 NSIEKNQTWKLTDLPTGAKTIGVKWIYKTK 801
Score = 35.0 bits (79), Expect(4) = 4e-30
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 101 GTMQNYKARLVAEGYAQQQGV 163
G + YKARLVA+GY+QQQGV
Sbjct: 806 GEVDKYKARLVAKGYSQQQGV 826
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 73.2 bits (178), Expect(3) = 6e-30
Identities = 35/50 (70%), Positives = 39/50 (78%)
Frame = +3
Query: 162 FSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
FSPVARFET+RT L LA H V+QFDVKS F NGEL EEVY SQP+G+
Sbjct: 1000 FSPVARFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEVYXSQPEGF 1049
Score = 59.7 bits (143), Expect(3) = 6e-30
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +1
Query: 331 VNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
V +LK ALYGLKQAPRAWYSKID YF+ENGF+
Sbjct: 1058 VYRLKXALYGLKQAPRAWYSKIDSYFVENGFE 1089
Score = 43.9 bits (102), Expect(3) = 6e-30
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +1
Query: 10 SAIHRNRIWELVDLPKGKNVIGLKWVVQCRW 102
+AI +N WELV+LP+ KNVIG+KWV + ++
Sbjct: 940 AAIEKNETWELVELPEDKNVIGVKWVFRTKY 970
>emb|CAN67886.1| hypothetical protein VITISV_042574 [Vitis vinifera]
Length = 439
Score = 68.6 bits (166), Expect(4) = 1e-28
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY*R 317
N+VF+PVAR++T+R L LA G V+Q D+KS FF+GEL+E+VYV QP GY R
Sbjct: 142 NEVFAPVARWDTIRMVLALAAQNGWSVYQLDIKSAFFHGELKEDVYVEQPLGYIR 196
Score = 60.5 bits (145), Expect(4) = 1e-28
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 313 KGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
KG+ KV K KK LYGLKQAPRAWYSKI+ YF+ GF+
Sbjct: 197 KGEEEKVYKFKKTLYGLKQAPRAWYSKIEAYFVNEGFE 234
Score = 32.0 bits (71), Expect(4) = 1e-28
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G + KARLVA+GYAQ+QG+
Sbjct: 116 NEKGEVDKCKARLVAKGYAQRQGI 139
Score = 31.2 bits (69), Expect(4) = 1e-28
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N+ W+L L G IG+KWV + +
Sbjct: 86 AIEKNKTWQLTTLLNGAKKIGVKWVFKTK 114
>gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 286
Score = 63.9 bits (154), Expect(4) = 1e-28
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQNEWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 56.6 bits (135), Expect(4) = 1e-28
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
IKG+ KV KLKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 IKGEEDKVLKLKKALYGLKQAPRAWNTRIDKYFKEKDF 168
Score = 38.9 bits (89), Expect(4) = 1e-28
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 10 SAIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
+AI +N WELV LP G+ IG+KWV + +
Sbjct: 20 NAIQKNDTWELVSLPNGQKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 1e-28
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
Length = 1283
Score = 62.8 bits (151), Expect(4) = 2e-28
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +1
Query: 325 HKVNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
HKV +LKKALYGLKQAPRAWYS+I+ YFL+ GFQ
Sbjct: 919 HKVYRLKKALYGLKQAPRAWYSRIEAYFLKEGFQ 952
Score = 58.9 bits (141), Expect(4) = 2e-28
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3
Query: 156 KVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
+VF+PVAR +T+R + LA P+FQ DV S F +G L+E+V+V QP GY
Sbjct: 861 EVFAPVARHDTIRLVIALAAQNSWPIFQLDVXSAFLHGNLEEQVFVDQPPGY 912
Score = 39.3 bits (90), Expect(4) = 2e-28
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 10 SAIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
+AI RN WEL +LPKG IG+KWV + +
Sbjct: 803 AAIERNDTWELSELPKGHKTIGVKWVYKTK 832
Score = 30.4 bits (67), Expect(4) = 2e-28
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 98 DGTMQNYKARLVAEGYAQQQGV 163
+G + YKARLVA+GY Q+ GV
Sbjct: 836 NGEVDKYKARLVAKGYKQEFGV 857
>gb|AGH20678.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 315
Score = 67.0 bits (162), Expect(4) = 2e-28
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LAP + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAPQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 55.8 bits (133), Expect(4) = 2e-28
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV KLKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VKGEEAKVLKLKKALYGLKQAPRAWNTRIDKYFKEKDF 168
Score = 38.9 bits (89), Expect(4) = 2e-28
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 10 SAIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
+AI +N WELV LP G+ IG+KWV + +
Sbjct: 20 NAIQKNDTWELVSLPNGQKAIGVKWVYKAK 49
Score = 29.6 bits (65), Expect(4) = 2e-28
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQ 154
N G ++ YKARLVA+GY+Q+
Sbjct: 51 NSKGEVERYKARLVAKGYSQR 71
>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
Length = 1265
Score = 58.9 bits (141), Expect(4) = 6e-28
Identities = 28/52 (53%), Positives = 36/52 (69%)
Frame = +3
Query: 156 KVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
+VF+PVAR ET+R + LA ++Q DVKS F +GEL EEV+V QP GY
Sbjct: 861 EVFAPVARMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGY 912
Score = 58.5 bits (140), Expect(4) = 6e-28
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 313 KGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
KG KV KLKKALYGLKQAP AWYS I+ YF++ GF+
Sbjct: 915 KGHEQKVYKLKKALYGLKQAPXAWYSXIEAYFMKEGFE 952
Score = 36.6 bits (83), Expect(4) = 6e-28
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +1
Query: 10 SAIHRNRIWELVDLPKGKNVIGLKWVVQCRW 102
+AI++N WEL +LP+G IG+KW+ + ++
Sbjct: 803 AAINKNGTWELTELPEGGKKIGVKWIYKTKF 833
Score = 35.8 bits (81), Expect(4) = 6e-28
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 89 YNVDGTMQNYKARLVAEGYAQQQGV 163
+N +G + YKARLVA+GY QQ GV
Sbjct: 833 FNENGEVDKYKARLVAKGYTQQHGV 857
>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
Length = 1109
Score = 72.0 bits (175), Expect(3) = 7e-28
Identities = 34/50 (68%), Positives = 39/50 (78%)
Frame = +3
Query: 162 FSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
FSP+A FET+RT L LA H V+QFDVKS F NGEL EEVYVSQP+G+
Sbjct: 761 FSPIALFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEVYVSQPEGF 810
Score = 60.5 bits (145), Expect(3) = 7e-28
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGFQ 426
+ G V +LKK L+GLKQAPRAWYSKID YF+ENGF+
Sbjct: 812 VPGKEEHVYRLKKTLFGLKQAPRAWYSKIDSYFVENGFE 850
Score = 37.4 bits (85), Expect(3) = 7e-28
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 89 YNVDGTMQNYKARLVAEGYAQQQGV 163
Y DG++Q +KA+LVA+GYAQQ GV
Sbjct: 731 YLADGSIQKHKAQLVAKGYAQQHGV 755
>gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 65.9 bits (159), Expect(4) = 8e-28
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKSTF NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSTFLNGDLEEEVYIEQPQGY 129
Score = 55.1 bits (131), Expect(4) = 8e-28
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 168
Score = 35.8 bits (81), Expect(4) = 8e-28
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV + +
Sbjct: 21 AIKKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 8e-28
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 64.3 bits (155), Expect(4) = 8e-28
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 57.4 bits (137), Expect(4) = 8e-28
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPRAW ++ID YF E GF
Sbjct: 131 VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFNEKGF 168
Score = 35.0 bits (79), Expect(4) = 8e-28
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
+I +N WEL LP G IG+KWV + +
Sbjct: 21 SIQKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 8e-28
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
Length = 1088
Score = 59.7 bits (143), Expect(4) = 9e-28
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +1
Query: 313 KGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
KG KV +LKKALYGLKQAPRAWYS+I+ YF++ GF
Sbjct: 711 KGKESKVYRLKKALYGLKQAPRAWYSRIESYFIKEGF 747
Score = 57.0 bits (136), Expect(4) = 9e-28
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +3
Query: 156 KVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
+VF+PVAR ET+R + LA ++Q DVKS F +GE+ EE +V QP GY
Sbjct: 657 EVFAPVARLETIRIVISLAAQKDWMIYQLDVKSAFLHGEIHEEXFVEQPPGY 708
Score = 39.3 bits (90), Expect(4) = 9e-28
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI RN WEL DLP G IG+KW+ + +
Sbjct: 600 AIERNNTWELTDLPSGGKTIGVKWIFKTK 628
Score = 33.1 bits (74), Expect(4) = 9e-28
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQG 160
N +G + YKARLVA+GY+QQ G
Sbjct: 630 NENGEVDKYKARLVAKGYSQQYG 652
>gb|AGH20668.1| reverse transcriptase, partial [Arabis hirsuta]
Length = 315
Score = 64.3 bits (155), Expect(4) = 1e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETIRLIILLAAQNNWRIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 54.7 bits (130), Expect(4) = 1e-27
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
++G+ +KV +LKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VEGEENKVLRLKKALYGLKQAPRAWNTRIDKYFKEKNF 168
Score = 37.7 bits (86), Expect(4) = 1e-27
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV Q +
Sbjct: 21 AIQKNDTWELASLPNGHKAIGVKWVYQAK 49
Score = 32.3 bits (72), Expect(4) = 1e-27
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA GY+Q+ G+
Sbjct: 51 NSKGEIERYKARLVANGYSQRAGI 74
>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 63.9 bits (154), Expect(4) = 3e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 55.1 bits (131), Expect(4) = 3e-27
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 168
Score = 35.8 bits (81), Expect(4) = 3e-27
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV + +
Sbjct: 21 AIKKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 3e-27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera] gi|389595484|gb|AFK88545.1| reverse
transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 63.9 bits (154), Expect(4) = 3e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 55.1 bits (131), Expect(4) = 3e-27
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 168
Score = 35.8 bits (81), Expect(4) = 3e-27
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV + +
Sbjct: 21 AIKKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 3e-27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 63.9 bits (154), Expect(4) = 3e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIILLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 55.1 bits (131), Expect(4) = 3e-27
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 168
Score = 35.8 bits (81), Expect(4) = 3e-27
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV + +
Sbjct: 21 AIKKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 3e-27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 63.9 bits (154), Expect(4) = 4e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 884 DEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 936
Score = 55.1 bits (131), Expect(4) = 4e-27
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPRAW ++ID YF E F
Sbjct: 938 VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 975
Score = 35.0 bits (79), Expect(4) = 4e-27
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
+I +N WEL LP G IG+KWV + +
Sbjct: 828 SIQKNDTWELTSLPNGHKAIGVKWVYKAK 856
Score = 32.7 bits (73), Expect(4) = 4e-27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 858 NSKGEVERYKARLVAKGYSQRAGI 881
>gb|AGH20680.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 64.3 bits (155), Expect(4) = 6e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 54.3 bits (129), Expect(4) = 6e-27
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKAL GLKQAPRAW ++ID YF E GF
Sbjct: 131 VKGEEDKVLRLKKALNGLKQAPRAWNTRIDKYFKEKGF 168
Score = 35.0 bits (79), Expect(4) = 6e-27
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
+I +N WEL LP G IG+KWV + +
Sbjct: 21 SIQKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 6e-27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 63.9 bits (154), Expect(4) = 6e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 53.9 bits (128), Expect(4) = 6e-27
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV +LKKALYGLKQAPR+W ++ID YF E F
Sbjct: 131 VKGEEDKVLRLKKALYGLKQAPRSWNTRIDKYFKEKDF 168
Score = 35.8 bits (81), Expect(4) = 6e-27
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV + +
Sbjct: 21 AIKKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 32.7 bits (73), Expect(4) = 6e-27
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ YKARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERYKARLVAKGYSQRAGI 74
>gb|AGH20676.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 315
Score = 63.5 bits (153), Expect(4) = 6e-27
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 153 NKVFSPVARFETMRTFLCLAPHFGLPVFQFDVKSTFFNGELQEEVYVSQPQGY 311
++VF+PVAR ET+R + LA + Q DVKS F NG+L+EEVY+ QPQGY
Sbjct: 77 DEVFAPVARLETVRLIISLAAQNVWKIHQMDVKSAFLNGDLEEEVYIEQPQGY 129
Score = 55.8 bits (133), Expect(4) = 6e-27
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 310 IKGDGHKVNKLKKALYGLKQAPRAWYSKIDGYFLENGF 423
+KG+ KV KLKKALYGLKQAPRAW ++ID YF E F
Sbjct: 131 VKGEEAKVLKLKKALYGLKQAPRAWNTRIDKYFKEQDF 168
Score = 36.2 bits (82), Expect(4) = 6e-27
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 13 AIHRNRIWELVDLPKGKNVIGLKWVVQCR 99
AI +N WEL LP G IG+KWV + +
Sbjct: 21 AIRKNDTWELASLPNGHKAIGVKWVYKAK 49
Score = 30.8 bits (68), Expect(4) = 6e-27
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 92 NVDGTMQNYKARLVAEGYAQQQGV 163
N G ++ +KARLVA+GY+Q+ G+
Sbjct: 51 NSKGEVERHKARLVAKGYSQRAGI 74