BLASTX nr result
ID: Achyranthes23_contig00034110
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00034110
(867 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY15730.1| RNA-dependent RNA polymerase family protein, puta... 181 3e-43
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 173 6e-41
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 173 6e-41
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 172 2e-40
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 171 2e-40
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 169 9e-40
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 168 2e-39
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 168 3e-39
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 167 5e-39
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 167 6e-39
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 167 6e-39
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 167 6e-39
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 165 2e-38
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 165 2e-38
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 165 2e-38
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 164 5e-38
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana] 164 5e-38
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 162 1e-37
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ... 162 1e-37
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 162 1e-37
>gb|EOY15730.1| RNA-dependent RNA polymerase family protein, putative isoform 1
[Theobroma cacao]
Length = 328
Score = 181 bits (459), Expect = 3e-43
Identities = 98/232 (42%), Positives = 137/232 (59%), Gaps = 12/232 (5%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D + MDR+LTL D + E+F+++K + LID+YY++LDAPK G+K+ VP L + FP
Sbjct: 100 DNCMAVMDRLLTLEDSNSPEEFLLKKNLQRLIDLYYESLDAPKTGKKIEVPRELRADAFP 159
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQLSAPI---KFWKLKCFEAEIPQQFLEKWITCYDS 515
H++ R +++S SILG+IYD V + + KL CF+ PQ EKW Y
Sbjct: 160 HYLER--QKSFKSASILGKIYDFVKSYGEELPRKEVRKLPCFDVGFPQDCREKWTELYKQ 217
Query: 514 YRIDMKNALEVSKNTA---------AVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIY 362
YR DM L+ + AVY Y++ELYGG L+ +P ++I EALAIY
Sbjct: 218 YREDMTQTLQTLDGKSKELRDVAANAVYNKYKQELYGGA-VLEQRQRPLDQIYKEALAIY 276
Query: 361 HICYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQMMR 206
+I YD+A R+ D KCGFAWKVAG AL + GEK + APSV+ ++ R
Sbjct: 277 NISYDYAIRIDDVGKCGFAWKVAGSALLSLYASEQGEKTLSCAPSVLKELFR 328
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 173 bits (439), Expect = 6e-41
Identities = 99/225 (44%), Positives = 139/225 (61%), Gaps = 10/225 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKK-GRKVVVPARLIPECF 689
D WL MDR+LTLG++C +E +++ I+ LIDIYYDALDAPKK GR++ VP L E F
Sbjct: 650 DSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELF 709
Query: 688 PHHMRRGENSTYRSKSILGEIYDIV----DQLSAPIKFWKLKCFEAEIPQQFLEKWITCY 521
PH M + E TYRS SILG+IYD V D + WKL CF+ E+ + +L KW Y
Sbjct: 710 PHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELY 769
Query: 520 DSYRIDMKNAL----EVSKNTAAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHIC 353
YR +M+NAL E + V + Y++ LY + +LS + EI EA+A+Y +
Sbjct: 770 GQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEAAE-FNLSKRRDEEIFEEAMALYQVS 828
Query: 352 YDFAERVGDPKKCGFAWKVAGDALWKI-VLQSNGEKPILFAPSVV 221
Y+ A+ G C FAW+VAG AL + VL++ GE+P++ +PS +
Sbjct: 829 YNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSAL 873
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 173 bits (439), Expect = 6e-41
Identities = 99/225 (44%), Positives = 139/225 (61%), Gaps = 10/225 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKK-GRKVVVPARLIPECF 689
D WL MDR+LTLG++C +E +++ I+ LIDIYYDALDAPKK GR++ VP L E F
Sbjct: 672 DSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELF 731
Query: 688 PHHMRRGENSTYRSKSILGEIYDIV----DQLSAPIKFWKLKCFEAEIPQQFLEKWITCY 521
PH M + E TYRS SILG+IYD V D + WKL CF+ E+ + +L KW Y
Sbjct: 732 PHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELY 791
Query: 520 DSYRIDMKNAL----EVSKNTAAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHIC 353
YR +M+NAL E + V + Y++ LY + +LS + EI EA+A+Y +
Sbjct: 792 GQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEAAE-FNLSKRRDEEIFEEAMALYQVS 850
Query: 352 YDFAERVGDPKKCGFAWKVAGDALWKI-VLQSNGEKPILFAPSVV 221
Y+ A+ G C FAW+VAG AL + VL++ GE+P++ +PS +
Sbjct: 851 YNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSAL 895
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 172 bits (435), Expect = 2e-40
Identities = 101/225 (44%), Positives = 135/225 (60%), Gaps = 10/225 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WL MDR+L LGD EK ++ + L+D+YY+ALDAPKKG KVVVP L FP
Sbjct: 572 DSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPKKGGKVVVPGELKSNLFP 631
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQLSAP----IKFWKLKCFEAEIPQQFLEKWITCYD 518
H+M R ++Y+S SILG IYD V+ A + KL F+ E+P++ L+KW Y
Sbjct: 632 HYMER--VNSYKSTSILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVPEECLKKWREHYQ 689
Query: 517 SYRIDMKNALE----VSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHI 356
YR +M +A++ SKN AA V + Y++ LYGG + L+ S +P +EI EALAIY +
Sbjct: 690 HYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLENSTRPLHEIFDEALAIYRV 749
Query: 355 CYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVV 221
YD A G KC FAWKVAG AL K + G + I + SV+
Sbjct: 750 TYDHAISQGAVGKCCFAWKVAGSALCKYYMNKQGARTIEASFSVL 794
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 171 bits (434), Expect = 2e-40
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 11/229 (4%)
Frame = -3
Query: 859 WLTYMDRMLTLGDECTDE--KFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
W+ MDR+LTL + CT+E K +++ + +LIDIYY+ALDAPK GRKV VP LI E FP
Sbjct: 762 WMALMDRLLTLNN-CTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFP 820
Query: 685 HHMRRGENSTYRSKSILGEIYDIVD---QLSAPIKFWKLKCFEAEIPQQFLEKWITCYDS 515
H+M + ++ T S SILG IYD V+ + + WKL CF+ E+P LEKW T Y+
Sbjct: 821 HYMEKDKSFT--STSILGLIYDEVEIWLENDMVGEIWKLPCFDVEVPPSCLEKWKTKYEE 878
Query: 514 YRIDMKNALEVS------KNTAAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHIC 353
YR DM +AL + + A V + Y++E YG ++ K +I EALA+Y++
Sbjct: 879 YRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVS 938
Query: 352 YDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQMMR 206
Y++A + K+CGFAWK+AG AL ++ + EK + PSVV ++ R
Sbjct: 939 YEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQNEKALNCDPSVVREIFR 987
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 169 bits (429), Expect = 9e-40
Identities = 96/228 (42%), Positives = 132/228 (57%), Gaps = 9/228 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WL +MDR+LTL D+ D+ ++ K+ LIDIYYDALDAPK G+KV +P L FP
Sbjct: 785 DSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHYLKANKFP 844
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQLS----APIKFWKLKCFEAEIPQQFLEKWITCYD 518
H+M +G + +Y S SILG+IYD VD + KL CFE EIPQ+ + W Y+
Sbjct: 845 HYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPCFEVEIPQRCMTLWRGRYE 904
Query: 517 SYRIDMKNALEVS-----KNTAAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHIC 353
Y+ DM A+ + V + Y+ LYG V+ + + + +I EALAIYH+
Sbjct: 905 EYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVE-FEQTVRKTEDIFDEALAIYHVT 963
Query: 352 YDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQMM 209
YD A +KCGFAWKVAG AL +I EK + PSV+ +++
Sbjct: 964 YDNARITYSIEKCGFAWKVAGSALCRIHAMYRKEKDLPILPSVLQEIL 1011
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 168 bits (426), Expect = 2e-39
Identities = 99/221 (44%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKK-GRKVVVPARLIPECF 689
D WL MDR+LTLG++CT+E ++K I+ LIDIYYDALDAPKK GRK+ VP L E F
Sbjct: 650 DSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELF 709
Query: 688 PHHMRRGENSTYRSKSILGEIYDIVDQLSAPIKFWKLKCFEAEIPQQFLEKWITCYDSYR 509
PH M + E TYRS SILG+IYD +K ++ + + + L KW Y YR
Sbjct: 710 PHFMEKHEKKTYRSTSILGKIYD-------KVKAYEDMDLSSNVHESCLVKWKGLYGQYR 762
Query: 508 IDMKNALEV--SKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICYDFA 341
+M+NAL+ KN A V + Y++ LY + +LS + EI EA A+Y + Y+ A
Sbjct: 763 TEMRNALQAGKEKNNEANEVIKKYKEILYEAAE-FNLSRRRDEEIFEEARALYQVTYNHA 821
Query: 340 ERVGDPKKCGFAWKVAGDALWKI-VLQSNGEKPILFAPSVV 221
+R G KCGFAW+VAG AL + VL++ E+P++ +PS +
Sbjct: 822 KRQGAVGKCGFAWRVAGLALCTLYVLKNQEERPLICSPSAL 862
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 168 bits (425), Expect = 3e-39
Identities = 101/225 (44%), Positives = 138/225 (61%), Gaps = 7/225 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WLT MDR LTLGDE +EK +++K+ LIDIYYDALDA KKG KV +P L P+ FP
Sbjct: 765 DSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFP 824
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQLSA-----PIKFWKLKCFEAEIPQQF-LEKWITC 524
H+M R + ++S SILG IYD V +A + KL+CFE E +F EK
Sbjct: 825 HYMER--DKKFKSTSILGIIYDFVQSQTAEEHTPSSEISKLQCFEDEPVSEFHKEKCRPW 882
Query: 523 YDSYRIDMKNALEVSKNTAA-VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICYD 347
YD+YR +M AL +TA+ V + Y++E YG D S K E+ +ALA+Y+I YD
Sbjct: 883 YDNYRAEMIQALSNKDDTASEVIEKYKQEFYGAAGFED-SKKSLEELYPQALALYNIVYD 941
Query: 346 FAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQM 212
+A + +KCGFAWKVAG L + L+ G K +L + S++ ++
Sbjct: 942 YAIEMKSVRKCGFAWKVAGPVLCRFYLKKTGGKALLCSLSMLKEL 986
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 167 bits (423), Expect = 5e-39
Identities = 102/230 (44%), Positives = 139/230 (60%), Gaps = 11/230 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WL +MD LTLGD EK +++KI +L+D+YY ALDA KKG KV VP L CFP
Sbjct: 1179 DNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFP 1238
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQLSAPIK----FWKLKCF-EAEIPQQFLEKWITCY 521
H+M G+N +Y S SILG IY+ VD+ + KL F E E+P L+KW +
Sbjct: 1239 HYM--GKNRSYPSTSILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPDACLDKWAELH 1296
Query: 520 DSYRIDMKNALE----VSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYH 359
YR +M +AL+ SKN +A V + Y+K LY D + S +P EI EA AIYH
Sbjct: 1297 RQYRKEMASALDDDDKQSKNQSADVVIRKYRKILYEAND-FEESRRPIEEIYNEAHAIYH 1355
Query: 358 ICYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQMM 209
+CYD A+RVG+ K C FAW+VAG AL ++ ++N E+ SV+ +++
Sbjct: 1356 VCYDHAKRVGNVKVCSFAWRVAGKALCQLHARNNNERFCTIVSSVLMEIL 1405
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 167 bits (422), Expect = 6e-39
Identities = 98/225 (43%), Positives = 133/225 (59%), Gaps = 10/225 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKK-GRKVVVPARLIPECF 689
DCW MDR LTLGDE +EK +++ + LI+IYYDALDAPKK G KV VP L E F
Sbjct: 785 DCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 844
Query: 688 PHHMRRGENSTYRSKSILGEIYDIVDQLSA----PIKFWKLKCFEAEIPQQFLEKWITCY 521
P +MRR E+ ++ S S+LG IY+ V A + WKL CF+ +P+ + KW Y
Sbjct: 845 PCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYY 904
Query: 520 DSYRIDMKNALE---VSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHI 356
D YR +MK A++ V + AA V + Y++ LYG + + S + EI EALAIY+I
Sbjct: 905 DQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAE-FEQSTRTLEEIYNEALAIYNI 963
Query: 355 CYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVV 221
YD A C FAW+VAG AL K + G++ +L + SV+
Sbjct: 964 TYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVL 1008
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 167 bits (422), Expect = 6e-39
Identities = 98/225 (43%), Positives = 133/225 (59%), Gaps = 10/225 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKK-GRKVVVPARLIPECF 689
DCW MDR LTLGDE +EK +++ + LI+IYYDALDAPKK G KV VP L E F
Sbjct: 787 DCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKF 846
Query: 688 PHHMRRGENSTYRSKSILGEIYDIVDQLSA----PIKFWKLKCFEAEIPQQFLEKWITCY 521
P +MRR E+ ++ S S+LG IY+ V A + WKL CF+ +P+ + KW Y
Sbjct: 847 PCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYY 906
Query: 520 DSYRIDMKNALE---VSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHI 356
D YR +MK A++ V + AA V + Y++ LYG + + S + EI EALAIY+I
Sbjct: 907 DQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAE-FEQSTRTLEEIYNEALAIYNI 965
Query: 355 CYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVV 221
YD A C FAW+VAG AL K + G++ +L + SV+
Sbjct: 966 TYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSMLCSASVL 1010
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 167 bits (422), Expect = 6e-39
Identities = 102/227 (44%), Positives = 137/227 (60%), Gaps = 9/227 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WLT MDR+L LGDE +EK ++KK+ +LIDIYYDALDAPKKG KV +P L P+ FP
Sbjct: 757 DSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFP 816
Query: 685 HHMRRGENSTYRSKSILGEIYDIV-----DQLSAPIKFWKLKCFEAEIPQQF-LEKWITC 524
H+M R ++S SILG IYD V ++ + + KL CFE E +F +EK
Sbjct: 817 HYMER--EKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSEFHMEKCRRW 874
Query: 523 YDSYRIDMKNALEVSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICY 350
YD+YR +M A++ K+ +A V Q Y++E YG D S K E+ +AL +Y I Y
Sbjct: 875 YDNYRSEMTQAMKTDKDESANEVIQRYKQEFYGAAGFED-SKKSLEELYPQALTLYKIVY 933
Query: 349 DFAERVGDPKKCGFAWKVAGDALWKIVLQSN-GEKPILFAPSVVCQM 212
D+A G KCGF WKVAG L + L EK ++ APSV+ ++
Sbjct: 934 DYAIHAG-VSKCGFVWKVAGPVLCRFYLMKKMQEKSLVCAPSVLKEL 979
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 165 bits (417), Expect = 2e-38
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WLT MDR L LGDE DEK +++K+ ELIDIYYDALDAPKKG KV +P L P+ FP
Sbjct: 760 DSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDAPKKGAKVYLPNELRPDIFP 819
Query: 685 HHMRRGENSTYRSKSILGEIYDIVD-----QLSAPIKFWKLKCFEAEIPQQF-LEKWITC 524
H+M R + ++S SILG IYD V Q S P + KL CFE E +F +++
Sbjct: 820 HYMER--DKKFKSTSILGLIYDFVQSQTTKQPSPPSEINKLPCFEDEPVSEFHMKECRRW 877
Query: 523 YDSYRIDMKNALEV-SKNTAAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICYD 347
YD Y+ +M +A+ + N + + +++ YG S + S K E+ +ALA+Y+I YD
Sbjct: 878 YDEYKDEMTHAMNTDASNKNEIIERCKEDFYGAA-SFEESKKSLEELYPQALALYNIVYD 936
Query: 346 FAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVV 221
A G +CGF WKVAG L + L+ EK ++ +PSV+
Sbjct: 937 HATHAG-VSRCGFVWKVAGPVLCRFYLKKRHEKTLVSSPSVL 977
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 165 bits (417), Expect = 2e-38
Identities = 98/228 (42%), Positives = 130/228 (57%), Gaps = 10/228 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WL +MDR+LTL D+C+DEK +++K+ EL DIYYDALDAPK G KV V L E FP
Sbjct: 703 DNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFP 762
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQL----SAPIKFWKLKCFEAE-IPQQFLEKWITCY 521
H M G S+Y S SILG+IYD V+ + + W+L F + +PQ L W Y
Sbjct: 763 HFM--GRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRY 820
Query: 520 DSYRIDMKNALEVSKNT-----AAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHI 356
D YR +M AL+ T A V Y++ LYG + + S + +I EALAIYH+
Sbjct: 821 DQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAE-FEESPRNLEDIFDEALAIYHV 879
Query: 355 CYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQM 212
Y+F C F W+VAG AL K+ GEK ++ PSV+ Q+
Sbjct: 880 TYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQV 927
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 165 bits (417), Expect = 2e-38
Identities = 98/228 (42%), Positives = 130/228 (57%), Gaps = 10/228 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WL +MDR+LTL D+C+DEK +++K+ EL DIYYDALDAPK G KV V L E FP
Sbjct: 717 DNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFP 776
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQL----SAPIKFWKLKCFEAE-IPQQFLEKWITCY 521
H M G S+Y S SILG+IYD V+ + + W+L F + +PQ L W Y
Sbjct: 777 HFM--GRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRY 834
Query: 520 DSYRIDMKNALEVSKNT-----AAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHI 356
D YR +M AL+ T A V Y++ LYG + + S + +I EALAIYH+
Sbjct: 835 DQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAE-FEESPRNLEDIFDEALAIYHV 893
Query: 355 CYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQM 212
Y+F C F W+VAG AL K+ GEK ++ PSV+ Q+
Sbjct: 894 TYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQV 941
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 164 bits (414), Expect = 5e-38
Identities = 101/227 (44%), Positives = 138/227 (60%), Gaps = 9/227 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WLT MDR L LGD+ +EK ++KK+ ELIDIYYDALDAPKKG KV +P +L P+ FP
Sbjct: 753 DSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFP 812
Query: 685 HHMRRGENSTYRSKSILGEIYDIV-----DQLSAPIKFWKLKCFEAEIPQQF-LEKWITC 524
H+M R + ++S SILG I+D V ++ S + KL CFE E +F ++K
Sbjct: 813 HYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLW 870
Query: 523 YDSYRIDMKNALEVSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICY 350
YD+YR +M A++ K+ +A V Q Y++E YG D S K E+ +ALA+Y I Y
Sbjct: 871 YDNYRTEMTQAMKTDKDESANEVIQRYKQEFYGAAGFED-SKKSLEELYPQALALYKIVY 929
Query: 349 DFAERVGDPKKCGFAWKVAGDALWKIVLQSN-GEKPILFAPSVVCQM 212
D+A G KC F WKVAG L + L EK ++ APSV+ ++
Sbjct: 930 DYAIHAG-VSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKEL 975
>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 164 bits (414), Expect = 5e-38
Identities = 101/227 (44%), Positives = 138/227 (60%), Gaps = 9/227 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WLT MDR L LGD+ +EK ++KK+ ELIDIYYDALDAPKKG KV +P +L P+ FP
Sbjct: 115 DSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFP 174
Query: 685 HHMRRGENSTYRSKSILGEIYDIV-----DQLSAPIKFWKLKCFEAEIPQQF-LEKWITC 524
H+M R + ++S SILG I+D V ++ S + KL CFE E +F ++K
Sbjct: 175 HYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLW 232
Query: 523 YDSYRIDMKNALEVSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICY 350
YD+YR +M A++ K+ +A V Q Y++E YG D S K E+ +ALA+Y I Y
Sbjct: 233 YDNYRTEMTQAMKTDKDESANEVIQRYKQEFYGAAGFED-SKKSLEELYPQALALYKIVY 291
Query: 349 DFAERVGDPKKCGFAWKVAGDALWKIVLQSN-GEKPILFAPSVVCQM 212
D+A G KC F WKVAG L + L EK ++ APSV+ ++
Sbjct: 292 DYAIHAG-VSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKEL 337
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 162 bits (411), Expect = 1e-37
Identities = 97/227 (42%), Positives = 129/227 (56%), Gaps = 7/227 (3%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
D WL YMDR+LTLGDEC +EK + +K+ +L D+YY+A+DAPK G+KV VP L PE +P
Sbjct: 765 DSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYP 824
Query: 685 HHMRRGENSTYRSKSILGEIYDIV--DQLSAPIK-FWKLKCFEAEIPQQFLEKWITCYDS 515
H M R Y S SILG+IYD+V Q+ P + L CF E+ +EKW Y
Sbjct: 825 HFMER--TYQYTSTSILGQIYDLVASAQMDVPCEDIELLPCFLEEVEPSGMEKWKGLYAQ 882
Query: 514 YRIDMKNAL----EVSKNTAAVYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYHICYD 347
YR +M AL + N V Q Y+K LY G + +P EI EA IY I Y
Sbjct: 883 YRDEMNKALSSTDQKKSNADEVIQNYKKILY-GAQEYEERTRPREEIFREACEIYAISYF 941
Query: 346 FAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVVCQMMR 206
+A+ D KCGFAWKVAG AL ++ + I SV+ ++++
Sbjct: 942 YAKEKSDIAKCGFAWKVAGCALCELHALKQKKNSITCLSSVLQELLK 988
>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 934
Score = 162 bits (411), Expect = 1e-37
Identities = 101/226 (44%), Positives = 135/226 (59%), Gaps = 11/226 (4%)
Frame = -3
Query: 865 DCWLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRKVVVPARLIPECFP 686
DCWL MD +LTLGDE EK+ +K I +LIDIYYDALDAPKKG KV +P L + FP
Sbjct: 706 DCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFP 765
Query: 685 HHMRRGENSTYRSKSILGEIYDIVDQLSA----PIKFWKLKCFEAE-IPQQFLEKWITCY 521
H+M R +RS SILG I+D VD +A P + KL FE E +P+ ++K+ + Y
Sbjct: 766 HYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWY 825
Query: 520 DSYRIDMKNALE----VSKNTAA--VYQMYQKELYGGVDSLDLSAKPWNEIKLEALAIYH 359
++YR +M A+E V K A V Q Y+++ YG D S K E+ +ALA+Y+
Sbjct: 826 ENYRAEMSQAMEETDKVKKKQLANEVIQRYKQDFYGAARFED-SNKSLEELYPQALALYN 884
Query: 358 ICYDFAERVGDPKKCGFAWKVAGDALWKIVLQSNGEKPILFAPSVV 221
I YDFA G KC F WKVAG L + L+ EK ++ + SV+
Sbjct: 885 IVYDFAFPEG-VSKCAFVWKVAGPVLCRFYLKKTQEKLVVASTSVL 929
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 162 bits (410), Expect = 1e-37
Identities = 102/246 (41%), Positives = 136/246 (55%), Gaps = 29/246 (11%)
Frame = -3
Query: 859 WLTYMDRMLTLGDECTDEKFIIRKKIDELIDIYYDALDAPKKGRK--------------- 725
WL MDR LTLGD+C EK ++ + EL+DIYYDALDAPK+G K
Sbjct: 279 WLALMDRFLTLGDDCVAEKNAVKDNLFELVDIYYDALDAPKQGGKQQDLAKFFEAYAALE 338
Query: 724 ----VVVPARLIPECFPHHMRRGENSTYRSKSILGEIYDIVDQLS----APIKFWKLKCF 569
V VP L P FPH+M + +++ S+SILG IYD VD + + +KL F
Sbjct: 339 LSFQVEVPRELKPNRFPHYMEK--QNSFHSRSILGWIYDEVDAYQLEDHSNKEIFKLPHF 396
Query: 568 EAEIPQQFLEKWITCYDSYRIDMKNAL---EVSKNTAA--VYQMYQKELYGGVDSLDLSA 404
E E+P+ L KW Y YR DM +AL +V K AA V + Y++ LY G + L+ S
Sbjct: 397 EVEVPEACLTKWKAHYKDYRDDMCDALLAKDVGKTEAAEEVKRKYKRLLY-GAEELEEST 455
Query: 403 KPWNEIKLEALAIYHICYDFAERVGDPKKCGFAWKVAGDALWKI-VLQSNGEKPILFAPS 227
K EI EALAIYH+CYD+A C FAW +AG AL K+ + GE+ PS
Sbjct: 456 KKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAWNIAGSALLKLHAFKKIGERAFFCLPS 515
Query: 226 VVCQMM 209
V+ +++
Sbjct: 516 VLKEVL 521