BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00028945
         (680 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      174   2e-41
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    99   2e-18
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...    97   3e-18
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...    97   3e-18
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...    97   3e-18
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    97   3e-18
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    97   3e-18
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...    97   6e-18
gb|EXB42920.1| DNA-directed RNA polymerase 3 [Morus notabilis]         95   2e-17
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    95   2e-17
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    95   2e-17
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...    93   7e-17
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...    92   1e-16
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    92   1e-16
emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]    92   1e-16
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...    89   1e-15
emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]     89   1e-15
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]        89   1e-15
ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thal...    89   1e-15
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...    89   1e-15

>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  174 bits (442), Expect = 2e-41
 Identities = 99/164 (60%), Positives = 112/164 (68%), Gaps = 7/164 (4%)
 Frame = +2

Query: 209 KNTQRTHLSLVIPLPNTHLRIXXXXXXXXXXXXXXXXXXXXXX----KVSKNSFYQPSLS 376
           K ++ TH SL IPL +  LRI                          K+ K SF+QPS  
Sbjct: 28  KASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSSNSFPSTLSLPSLTPKLGKTSFFQPSPQ 87

Query: 377 SQIIL---EEDLAEKDDGQFPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGLCESNTGLR 547
           SQIIL   EE+LAEK DG F NS K+K     + RIFMQD PWVN+LFMKGL +SNTGLR
Sbjct: 88  SQIILDSPEEELAEKMDGHFRNSDKIKG----SSRIFMQDPPWVNTLFMKGLVDSNTGLR 143

Query: 548 LEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKEMREKK 679
           LEFKEIEREKYNLLRRRQIKAETEAWE+MVEEYREFV+EMR+KK
Sbjct: 144 LEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFVREMRDKK 187


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 98.6 bits (244), Expect = 2e-18
 Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 16/128 (12%)
 Frame = +2

Query: 344 SKNSFYQPSLSSQIILEEDLAEKDDG-QF-PNSAKVKNEIQLN-------------GRIF 478
           S + F++PSLSS       L    D  QF P +  V++ +  N              RIF
Sbjct: 42  SNSLFFKPSLSSSTHFPLSLRPPPDPIQFHPLNDSVQDNLVENLENSIKFQVPISEPRIF 101

Query: 479 MQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREF 655
           +QD PW+ SLF+KG+ +  N  L++E KEI+R KYNLLRRRQIKAETEAWE MVE+Y++ 
Sbjct: 102 IQDPPWIASLFLKGMFKKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDL 161

Query: 656 VKEMREKK 679
            + MREKK
Sbjct: 162 ERVMREKK 169


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 45/71 (63%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
 Frame = +2

Query: 470 RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 646
           R+F+QD PW+++LF+KGL + +N  +++E KEIE+ KYNLLRRRQ+K ETEAWE MVEEY
Sbjct: 103 RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 647 REFVKEMREKK 679
           RE  +EM EKK
Sbjct: 163 RELQREMCEKK 173


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 45/71 (63%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
 Frame = +2

Query: 470 RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 646
           R+F+QD PW+++LF+KGL + +N  +++E KEIE+ KYNLLRRRQ+K ETEAWE MVEEY
Sbjct: 103 RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 647 REFVKEMREKK 679
           RE  +EM EKK
Sbjct: 163 RELQREMCEKK 173


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 47/71 (66%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +2

Query: 470 RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 646
           RIF+QD PW+ SLF+KG+ + +N  L+LE KEIER  YN+LRRRQIKAETEAWE MV+EY
Sbjct: 102 RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEY 161

Query: 647 REFVKEMREKK 679
           ++  K MREKK
Sbjct: 162 KDLEKVMREKK 172


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 48/71 (67%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
 Frame = +2

Query: 470 RIFMQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 646
           RIF+QD PW+ SLF+KGL +     ++LEF EIE+ KYNLLRRRQIKAETEAWE MVEEY
Sbjct: 103 RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEY 162

Query: 647 REFVKEMREKK 679
           +E  +EM EKK
Sbjct: 163 KELEREMCEKK 173


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 48/71 (67%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
 Frame = +2

Query: 470 RIFMQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 646
           RIF+QD PW+ SLF+KGL +     ++LEF EIE+ KYNLLRRRQIKAETEAWE MVEEY
Sbjct: 103 RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEY 162

Query: 647 REFVKEMREKK 679
           +E  +EM EKK
Sbjct: 163 KELEREMCEKK 173


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
           [Ricinus communis] gi|223532193|gb|EEF33998.1|
           DNA-directed RNA polymerase 3B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 1000

 Score = 96.7 bits (239), Expect = 6e-18
 Identities = 45/71 (63%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
 Frame = +2

Query: 470 RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 646
           R+F+QD PW+++LF KGL +  N  ++LEFK+IE+ KYNLLRRRQI+ ETEAWE MVEEY
Sbjct: 113 RVFIQDPPWISALFFKGLYKIPNKEVKLEFKDIEKRKYNLLRRRQIREETEAWERMVEEY 172

Query: 647 REFVKEMREKK 679
           +  VKEM E+K
Sbjct: 173 KALVKEMCERK 183


>gb|EXB42920.1| DNA-directed RNA polymerase 3 [Morus notabilis]
          Length = 604

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 45/73 (61%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
 Frame = +2

Query: 464 NGRIFMQDSP-WVNSLFMKGLCESNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVE 640
           N RIF QD P W+ SLF+KG+      +R+E +EIER +YNLLRRRQI+AETEAWE   E
Sbjct: 103 NPRIFFQDPPPWIASLFLKGIFNGGEAVRVESREIERRRYNLLRRRQIRAETEAWERTAE 162

Query: 641 EYREFVKEMREKK 679
           EYRE  +EMRE+K
Sbjct: 163 EYREIEREMRERK 175


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum tuberosum]
          Length = 1015

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
 Frame = +2

Query: 389 LEEDLAEKDDGQ-FPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGL---CESNTGLRLEF 556
           L E+L E  + Q  PN   +  + + N R+F+QD PWV+SLFM  L    +   G+R EF
Sbjct: 110 LTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREF 169

Query: 557 KEIEREK-YNLLRRRQIKAETEAWENMVEEYREFVKEMREKK 679
           +EIER + Y +LRRRQIKAETEAWE MVEEYRE  +EM EKK
Sbjct: 170 REIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKK 211


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Solanum lycopersicum]
          Length = 1007

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
 Frame = +2

Query: 389 LEEDLAEKDDGQ-FPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGL---CESNTGLRLEF 556
           L E+L E  + Q  PN   +  + + N R+F+QD PWV+SLFM  L    +   G+R EF
Sbjct: 102 LTENLEELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREF 161

Query: 557 KEIEREK-YNLLRRRQIKAETEAWENMVEEYREFVKEMREKK 679
           +EIER + Y +LRRRQIKAETEAWE MVEEYRE  +EM EKK
Sbjct: 162 REIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKK 203


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
           AltName: Full=NsRpoT-C; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3;
           Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
           RecName: Full=DNA-directed RNA polymerase 3A,
           chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
           Full=T7 bacteriophage-type single subunit RNA polymerase
           3A; Flags: Precursor gi|21425641|emb|CAC82576.3|
           phage-type RNA polymerase [Nicotiana sylvestris]
           gi|21425679|emb|CAC95027.2| plastid RNA polymerase
           [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 977

 Score = 93.2 bits (230), Expect = 7e-17
 Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
 Frame = +2

Query: 431 NSAKVKNEI---QLNGRIFMQDSPWVNSLFMKGL---CESNTGLRLEFKEIEREK-YNLL 589
           N  K+ N +   + N R+F+QD PWV+SLFM  L    +   G+R EF+EIER + Y +L
Sbjct: 84  NLQKIANGVLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAML 143

Query: 590 RRRQIKAETEAWENMVEEYREFVKEMREKK 679
           RRRQIKAETEAWE MVEEYRE  +EM EKK
Sbjct: 144 RRRQIKAETEAWEQMVEEYRELEREMCEKK 173


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
           AltName: Full=NictaRpoT3-tom; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 3B;
           Flags: Precursor gi|21425667|emb|CAC95021.2| chloroplast
           RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 4/76 (5%)
 Frame = +2

Query: 464 NGRIFMQDSPWVNSLFMKGL---CESNTGLRLEFKEIEREK-YNLLRRRQIKAETEAWEN 631
           N R+F+QD PWV+SLFM  L    +   G+R EF+EIER + Y +LRRRQIKAETEAWE 
Sbjct: 97  NKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQ 156

Query: 632 MVEEYREFVKEMREKK 679
           MVEEYRE  +EM EKK
Sbjct: 157 MVEEYRELEREMCEKK 172


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
 Frame = +2

Query: 422 QFPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGLCESN--TG--LRLEFKEIEREKYNLL 589
           Q  ++ +VK  I    RIF+QD PW++S      CE N  TG  ++LEF+E ER  Y LL
Sbjct: 90  QDSSNIQVKESIP---RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLL 146

Query: 590 RRRQIKAETEAWENMVEEYREFVKEMREKK 679
           RRRQ+KAETEAWE MVEEYRE  +EM EKK
Sbjct: 147 RRRQVKAETEAWERMVEEYREIEREMCEKK 176


>emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
          Length = 1312

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
 Frame = +2

Query: 422 QFPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGLCESN--TG--LRLEFKEIEREKYNLL 589
           Q  ++ +VK  I    RIF+QD PW++S      CE N  TG  ++LEF+E ER  Y LL
Sbjct: 90  QDSSNIQVKESIP---RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLL 146

Query: 590 RRRQIKAETEAWENMVEEYREFVKEMREKK 679
           RRRQ+KAETEAWE MVEEYRE  +EM EKK
Sbjct: 147 RRRQVKAETEAWERMVEEYREIEREMCEKK 176


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
           gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 990

 Score = 89.4 bits (220), Expect = 1e-15
 Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 16/127 (12%)
 Frame = +2

Query: 344 SKNSFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIF 478
           S  S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+F
Sbjct: 62  SSLSVHEKPISNSVHFHGNLIESFENQDSSYAGTINGASLIEELENPVERNGLSGRRRLF 121

Query: 479 MQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREF 655
           MQD PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+ 
Sbjct: 122 MQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDL 181

Query: 656 VKEMREK 676
            KEM EK
Sbjct: 182 EKEMCEK 188


>emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 282

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 16/124 (12%)
 Frame = +2

Query: 353 SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 487
           S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 68  SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 127

Query: 488 SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 664
            PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 128 PPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 665 MREK 676
           M EK
Sbjct: 188 MCEK 191


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
 Frame = +2

Query: 473 IFMQDSPWVNSLFMKGLCESNTG---LRLEFKEIEREKYNLLRRRQIKAETEAWENMVEE 643
           + +QD PW++SL++K L   N     +++EFKE+ER KY  LRRRQIKAETEAWENMV+E
Sbjct: 78  VIIQDPPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMVKE 137

Query: 644 YREFVKEMREKK 679
           Y+E  KEM EKK
Sbjct: 138 YKELEKEMCEKK 149


>ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase
           3 [Arabidopsis thaliana]
          Length = 895

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 16/124 (12%)
 Frame = +2

Query: 353 SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 487
           S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 68  SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 127

Query: 488 SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 664
            PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 128 PPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 665 MREK 676
           M EK
Sbjct: 188 MCEK 191


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
           gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
           Full=DNA-directed RNA polymerase 3, chloroplastic;
           Flags: Precursor gi|2330560|emb|CAA69972.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|2330564|emb|CAA69717.1| chloroplast
           single-subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
           subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|110739160|dbj|BAF01496.1| chloroplast
           single subunit DNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
           polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 16/124 (12%)
 Frame = +2

Query: 353 SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 487
           S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 68  SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 127

Query: 488 SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 664
            PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 128 PPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 665 MREK 676
           M EK
Sbjct: 188 MCEK 191