BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00027966
         (752 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   217   3e-54
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu...   210   4e-52
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   209   8e-52
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              209   8e-52
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   199   1e-48
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   199   1e-48
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   199   1e-48
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   199   1e-48
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe...   186   7e-45
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   186   9e-45
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   186   9e-45
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   181   3e-43
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   181   3e-43
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   179   1e-42
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   174   3e-41
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   174   3e-41
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su...   174   3e-41
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   171   2e-40
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus...   171   3e-40
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus...   171   3e-40

>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  217 bits (553), Expect = 3e-54
 Identities = 110/226 (48%), Positives = 153/226 (67%), Gaps = 4/226 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF++ GA  IKAAK G  D L GSLDALAWG++P LGTG  F+ +YSGK H++ KPVD+Y
Sbjct: 1240 CFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVY 1299

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNV----AIPKKLVQKH 348
            NLL  Q +    ++KI+  S D+  + EK  ++ + +   + +  +    ++ K +++K 
Sbjct: 1300 NLLGGQSTCEKQNTKIE--SLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKF 1357

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             +++DI +L    + IL KY + E+L + DK+ L+MAL FHPHR+EKIG GA DIKV  H
Sbjct: 1358 LTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSH 1417

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRW 666
            S ++ +RCFVL RSDGT EDFSY KC  GALE+I P R K YQS+W
Sbjct: 1418 SKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKW 1463


>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao]
          Length = 1484

 Score =  210 bits (535), Expect = 4e-52
 Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 4/232 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N  ASF+KAAK GA D+L G++DALAWG+IP +GTG  F+ +YS K+ ++ +PVD+Y
Sbjct: 1254 CFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVY 1313

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRL---SSTKVFNVAIPKKLVQKHF 351
             LL S  SS   D + ++P        EK GS  ++ L   +S ++  +   ++ + +  
Sbjct: 1314 KLLGSSISSQKQDVEFEVPKA-LNFKSEKYGSLLIDALGDSASEELKKIETKRRSIWREL 1372

Query: 352  -SVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             ++DDI RL R  + IL KYPI  +L + D   L+MAL FHP R+EKIG+GA +IKV  H
Sbjct: 1373 LTLDDIQRLSRALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYH 1432

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGSM 684
              H  +RCF L R+DGT+ DFSY KC  GALE+I P RAK Y+S+W ++GS+
Sbjct: 1433 PEHANARCFSLVRTDGTIVDFSYHKCVLGALEIIAPHRAKSYKSKWLQSGSL 1484


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  209 bits (532), Expect = 8e-52
 Identities = 113/226 (50%), Positives = 150/226 (66%), Gaps = 4/226 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF++ G+ FIKA K+   D L GSLDALAWGKIP +G+G  F+ +YS K H++ +P DIY
Sbjct: 1261 CFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIY 1320

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRL--NRLSSTKVFNVA--IPKKLVQKH 348
             LL SQ S  + + K+K+P         K G++ +  N  S++K       I K +++  
Sbjct: 1321 KLLGSQTSCHEQNLKVKVPITCYQTTT-KCGAQLVYANGDSASKGCKSLEKISKSVLRSF 1379

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             S++DI +L R+ K IL KYPI  +L + DKT L+MAL FHP R+EKIG GA +IKV  H
Sbjct: 1380 LSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYH 1439

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRW 666
            S +  +RCF L R+DGT EDFSY KC  GALE+IDPRRA+ YQSRW
Sbjct: 1440 SKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSRW 1485


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  209 bits (532), Expect = 8e-52
 Identities = 113/226 (50%), Positives = 150/226 (66%), Gaps = 4/226 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF++ G+ FIKA K+   D L GSLDALAWGKIP +G+G  F+ +YS K H++ +P DIY
Sbjct: 1119 CFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIY 1178

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRL--NRLSSTKVFNVA--IPKKLVQKH 348
             LL SQ S  + + K+K+P         K G++ +  N  S++K       I K +++  
Sbjct: 1179 KLLGSQTSCHEQNLKVKVPITCYQTTT-KCGAQLVYANGDSASKGCKSLEKISKSVLRSF 1237

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             S++DI +L R+ K IL KYPI  +L + DKT L+MAL FHP R+EKIG GA +IKV  H
Sbjct: 1238 LSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYH 1297

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRW 666
            S +  +RCF L R+DGT EDFSY KC  GALE+IDPRRA+ YQSRW
Sbjct: 1298 SKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSRW 1343


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  199 bits (505), Expect = 1e-48
 Identities = 108/231 (46%), Positives = 149/231 (64%), Gaps = 2/231 (0%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N  A FIKAAK    D L G+LDALAWG IP LGTG  FE ++SGK H++ KP+++Y
Sbjct: 1172 CFSNPAACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFELVFSGKGHEVDKPINVY 1231

Query: 181  NLLASQPS-SLDSDSKIKMPSNDQTLVPEKLGSRRL-NRLSSTKVFNVAIPKKLVQKHFS 354
            ++LA+  S  +   ++     N +++   K G+  L ++  S  +  + I K  ++K F 
Sbjct: 1232 DMLATGISPDVQGVNETPDAKNHRSV---KFGALLLYDKSVSQGLKKLGISKDRIKKLFK 1288

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSG 534
            +DDIW L     +IL KYPI + L   DK+ L++AL FHP  +EKIG G  DIKV  H  
Sbjct: 1289 LDDIWILSNALAKILNKYPINQSLDHKDKSTLMIALYFHPRIDEKIGTGFQDIKVAYHPK 1348

Query: 535  HKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGSMQ 687
            H+ SRCFVL R+DGTVEDFSY KC  GALE+IDP+ A++Y+S    +G+ Q
Sbjct: 1349 HQSSRCFVLVRADGTVEDFSYRKCVLGALEIIDPQAAEIYKSNMRYDGNDQ 1399


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  199 bits (505), Expect = 1e-48
 Identities = 104/229 (45%), Positives = 151/229 (65%), Gaps = 3/229 (1%)
 Frame = +1

Query: 4    FTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIYN 183
            F+N GASFIKAAK GA D L GS+DAL WGK+P +GTG  F+ +YSG+   + KPVD+YN
Sbjct: 1217 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYN 1276

Query: 184  LLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNV---AIPKKLVQKHFS 354
            LL S P S   + K+K+    Q L+ +K G++     +   + N+    I + +++K ++
Sbjct: 1277 LL-STPVSSKQNEKLKV-CKAQGLISDKCGAK-FGDFAFKGLGNLDFETISRGVLRKSWT 1333

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSG 534
             +D+ RL    K+IL KY IG++L + DKT ++ AL FHP R EK+G    DI+V  H  
Sbjct: 1334 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1393

Query: 535  HKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
            H+ SRCF L R DG++EDFSY KC  GALE+I P +A++Y+++W + G+
Sbjct: 1394 HQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGT 1442


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  199 bits (505), Expect = 1e-48
 Identities = 104/229 (45%), Positives = 151/229 (65%), Gaps = 3/229 (1%)
 Frame = +1

Query: 4    FTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIYN 183
            F+N GASFIKAAK GA D L GS+DAL WGK+P +GTG  F+ +YSG+   + KPVD+YN
Sbjct: 1255 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYN 1314

Query: 184  LLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNV---AIPKKLVQKHFS 354
            LL S P S   + K+K+    Q L+ +K G++     +   + N+    I + +++K ++
Sbjct: 1315 LL-STPVSSKQNEKLKV-CKAQGLISDKCGAK-FGDFAFKGLGNLDFETISRGVLRKSWT 1371

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSG 534
             +D+ RL    K+IL KY IG++L + DKT ++ AL FHP R EK+G    DI+V  H  
Sbjct: 1372 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1431

Query: 535  HKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
            H+ SRCF L R DG++EDFSY KC  GALE+I P +A++Y+++W + G+
Sbjct: 1432 HQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGT 1480


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  199 bits (505), Expect = 1e-48
 Identities = 104/229 (45%), Positives = 151/229 (65%), Gaps = 3/229 (1%)
 Frame = +1

Query: 4    FTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIYN 183
            F+N GASFIKAAK GA D L GS+DAL WGK+P +GTG  F+ +YSG+   + KPVD+YN
Sbjct: 1217 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYN 1276

Query: 184  LLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNV---AIPKKLVQKHFS 354
            LL S P S   + K+K+    Q L+ +K G++     +   + N+    I + +++K ++
Sbjct: 1277 LL-STPVSSKQNEKLKV-CKAQGLISDKCGAK-FGDFAFKGLGNLDFETISRGVLRKSWT 1333

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSG 534
             +D+ RL    K+IL KY IG++L + DKT ++ AL FHP R EK+G    DI+V  H  
Sbjct: 1334 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1393

Query: 535  HKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
            H+ SRCF L R DG++EDFSY KC  GALE+I P +A++Y+++W + G+
Sbjct: 1394 HQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGT 1442


>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  186 bits (472), Expect = 7e-45
 Identities = 100/222 (45%), Positives = 140/222 (63%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF++ GA FIKAAK G  DEL GS++ALAWG  P  GTG  F+ +YS +   + KP++ Y
Sbjct: 1136 CFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPY 1195

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKKLVQKHFSVD 360
            +LL SQ SS   ++     + + TL  +K     +    S  VF     K +++K+ +++
Sbjct: 1196 DLLGSQISSSRENAFETSKAWNNTL--DKCDVTSIGLEKSESVF-----KSVIRKYLTIN 1248

Query: 361  DIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSGHK 540
            DI +  +  K IL KY I E L + DK++L MAL FHPH+ +K+G+G  DIKV QH  H+
Sbjct: 1249 DIQKWTQTLKRILRKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQHPKHE 1308

Query: 541  ESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRW 666
             +RCF+L R D T EDFSY KC  GALE++ P RAK Y+S+W
Sbjct: 1309 NARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERAKSYRSKW 1350


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  186 bits (471), Expect = 9e-45
 Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 3/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N G SF++AAK G  D L GSL++LAWGK P +GTG+ F+ +YSGK ++  +P+D+Y
Sbjct: 1007 CFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVY 1066

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKKL--VQKHFS 354
             LL +  +S     K+K+  ++   +  K  +RRL+RL      +      +  ++   S
Sbjct: 1067 TLLQNHVTS--GTPKVKVTLDEDGGMDGKSLARRLDRLDDLNKKSCKSEWSITKLRSFIS 1124

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGA-VDIKVDQHS 531
             +DI +L +  K++L KY I  +L + DK + +MAL+FHP R EKIG GA  +IK+  H 
Sbjct: 1125 FNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHK 1184

Query: 532  GHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
             +++SRCF+L RSDG+VEDFSY KC Q ALELI P++AK   SRW    S
Sbjct: 1185 EYEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQKAK--TSRWLNRAS 1232


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  186 bits (471), Expect = 9e-45
 Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 3/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N G SF++AAK G  D L GSL++LAWGK P +GTG+ F+ +YSGK ++  +P+D+Y
Sbjct: 1220 CFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVY 1279

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKKL--VQKHFS 354
             LL +  +S     K+K+  ++   +  K  +RRL+RL      +      +  ++   S
Sbjct: 1280 TLLQNHVTS--GTPKVKVTLDEDGGMDGKSLARRLDRLDDLNKKSCKSEWSITKLRSFIS 1337

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGA-VDIKVDQHS 531
             +DI +L +  K++L KY I  +L + DK + +MAL+FHP R EKIG GA  +IK+  H 
Sbjct: 1338 FNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHK 1397

Query: 532  GHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
             +++SRCF+L RSDG+VEDFSY KC Q ALELI P++AK   SRW    S
Sbjct: 1398 EYEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQKAK--TSRWLNRAS 1445


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  181 bits (458), Expect = 3e-43
 Identities = 102/230 (44%), Positives = 145/230 (63%), Gaps = 3/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CFTN G SF++AAK G  D+L GSL++LAWGK P +GTG+ F+ MYSGK +++ + +++Y
Sbjct: 1220 CFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVY 1279

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLS--STKVFNVAIPKKLVQKHFS 354
             LL +  +    + K+ +   D  +    L  RRL+RL     K     +    ++ +FS
Sbjct: 1280 TLLRNLVTVDTPNVKVTL-GKDGGMDGMSL-VRRLDRLDDLDKKSCKSELSFTKLRSYFS 1337

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGA-VDIKVDQHS 531
             +DI +L +  K++L KY IG +L + DK + +MAL+FHP R EKIG GA  +IK+  H 
Sbjct: 1338 FNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQ 1397

Query: 532  GHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
              + SRCF++ RSD TVEDFSY KC Q ALELI P++AK   SRW    S
Sbjct: 1398 EFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQKAK--TSRWLNGAS 1445


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  181 bits (458), Expect = 3e-43
 Identities = 102/230 (44%), Positives = 145/230 (63%), Gaps = 3/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CFTN G SF++AAK G  D+L GSL++LAWGK P +GTG+ F+ MYSGK +++ + +++Y
Sbjct: 912  CFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVY 971

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLS--STKVFNVAIPKKLVQKHFS 354
             LL +  +    + K+ +   D  +    L  RRL+RL     K     +    ++ +FS
Sbjct: 972  TLLRNLVTVDTPNVKVTL-GKDGGMDGMSL-VRRLDRLDDLDKKSCKSELSFTKLRSYFS 1029

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGA-VDIKVDQHS 531
             +DI +L +  K++L KY IG +L + DK + +MAL+FHP R EKIG GA  +IK+  H 
Sbjct: 1030 FNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQ 1089

Query: 532  GHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGS 681
              + SRCF++ RSD TVEDFSY KC Q ALELI P++AK   SRW    S
Sbjct: 1090 EFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQKAK--TSRWLNGAS 1137


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  179 bits (453), Expect = 1e-42
 Identities = 98/250 (39%), Positives = 141/250 (56%), Gaps = 3/250 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N G+SF+KAAK G  D L G+LDALAWG    +GTG  F+ +YS K  +I K VD+Y
Sbjct: 1414 CFSNPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVY 1473

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKK---LVQKHF 351
             LL +  + +D +  I       +      G    +  S    +    PK+   +++   
Sbjct: 1474 GLLETSFNQMDQEINIPQSRKYSS------GKCSSDFRSKNGGYTPKEPKQWKSVLRNFM 1527

Query: 352  SVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHS 531
            + +DI RL    + IL KY I E L + DK  ++  L FHP R+EK G+G  +IKV  H 
Sbjct: 1528 TANDIQRLTFDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHP 1587

Query: 532  GHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGSMQKA*REGNN 711
               +SRCF + R DG+VEDFSY KC  GAL++IDP+++K+ ++RW+ NG M+     GN 
Sbjct: 1588 EFTDSRCFFIIRKDGSVEDFSYRKCILGALDIIDPKKSKIQRNRWSGNGDMEAKKWSGNG 1647

Query: 712  TLTLLPPKGS 741
             +      GS
Sbjct: 1648 DMEAKKWSGS 1657


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  174 bits (441), Expect = 3e-41
 Identities = 96/230 (41%), Positives = 139/230 (60%), Gaps = 4/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF N G+ FIKAAK GA D L GSLD LAWG    +GT   F+ +YS K H++ K VD+Y
Sbjct: 1159 CFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVY 1218

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNR----LSSTKVFNVAIPKKLVQKH 348
             LL +   S D  +  K+ ++      +K GS   ++    L   K +     K +++  
Sbjct: 1219 ELLEA---SFDKPNN-KIGTHLHKYSSDKCGSEFRHKNGYALKEGKQW-----KTILRNF 1269

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             +V+DI +L    + IL KY I E L + D++ +L  L FHPH+ EK G G  DIKV  H
Sbjct: 1270 VTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWH 1329

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNG 678
              +K+SRCF + R+DGTVEDFSY KC  GAL+++DP+++K+ + +W+ +G
Sbjct: 1330 PKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHG 1379


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  174 bits (441), Expect = 3e-41
 Identities = 96/230 (41%), Positives = 139/230 (60%), Gaps = 4/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF N G+ FIKAAK GA D L GSLD LAWG    +GT   F+ +YS K H++ K VD+Y
Sbjct: 1235 CFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVY 1294

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNR----LSSTKVFNVAIPKKLVQKH 348
             LL +   S D  +  K+ ++      +K GS   ++    L   K +     K +++  
Sbjct: 1295 ELLEA---SFDKPNN-KIGTHLHKYSSDKCGSEFRHKNGYALKEGKQW-----KTILRNF 1345

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             +V+DI +L    + IL KY I E L + D++ +L  L FHPH+ EK G G  DIKV  H
Sbjct: 1346 VTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWH 1405

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNG 678
              +K+SRCF + R+DGTVEDFSY KC  GAL+++DP+++K+ + +W+ +G
Sbjct: 1406 PKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHG 1455


>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Glycine max]
          Length = 1458

 Score =  174 bits (441), Expect = 3e-41
 Identities = 96/230 (41%), Positives = 139/230 (60%), Gaps = 4/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF N G+ FIKAAK GA D L GSLD LAWG    +GT   F+ +YS K H++ K VD+Y
Sbjct: 1236 CFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVY 1295

Query: 181  NLLASQPSSLDSDSKIKMPSNDQTLVPEKLGSRRLNR----LSSTKVFNVAIPKKLVQKH 348
             LL +   S D  +  K+ ++      +K GS   ++    L   K +     K +++  
Sbjct: 1296 ELLEA---SFDKPNN-KIGTHLHKYSSDKCGSEFRHKNGYALKEGKQW-----KTILRNF 1346

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             +V+DI +L    + IL KY I E L + D++ +L  L FHPH+ EK G G  DIKV  H
Sbjct: 1347 VTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWH 1406

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNG 678
              +K+SRCF + R+DGTVEDFSY KC  GAL+++DP+++K+ + +W+ +G
Sbjct: 1407 PKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHG 1456


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score =  171 bits (433), Expect = 2e-40
 Identities = 92/230 (40%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+  G   +KAAK G  D L GSLDAL WG  P LG+G  F+ ++S K     KP+ +Y
Sbjct: 1215 CFSTPGPCLVKAAKVGVVDNLQGSLDALTWGNTPSLGSGGQFDIIFS-KGPVSSKPIKVY 1273

Query: 181  NLLASQ----PSSLDSDSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKKLVQKH 348
            +LL+SQ    P +    S   +  +D+ + P    +  L +  S       I K +++++
Sbjct: 1274 DLLSSQIITNPQNGFEMSDAPIHLSDKFVAPNMYKNGYLRKWES-------ITKSVLREN 1326

Query: 349  FSVDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQH 528
             ++ DI RL +  K IL KY + E++ D DK +L+M L+FHPH + KIG G  ++KV  H
Sbjct: 1327 LTIQDIDRLSQALKNILQKYDVNERINDMDKQVLMMVLRFHPHGDRKIGLGIKEVKVGHH 1386

Query: 529  SGHKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNG 678
              H+  RCF+L R+DGT+ED SY KC  GA ++I P RAK Y+ R+   G
Sbjct: 1387 PDHENVRCFMLVRTDGTIEDVSYHKCICGAYDIIAPHRAKGYRVRYMSRG 1436


>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  171 bits (432), Expect = 3e-40
 Identities = 99/231 (42%), Positives = 138/231 (59%), Gaps = 2/231 (0%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N G SFIKAAK    D L GSLDALAWG  P +GT   F+ +YS K H++ K VD+Y
Sbjct: 1232 CFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVY 1291

Query: 181  NLLASQPSSLDS-DSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKKLVQKHF-S 354
             LL +   S D  ++KI   +++ +    K GS    R  +   F      K + ++F +
Sbjct: 1292 KLLEA---SFDKPNNKIGFHAHNNS--SGKCGSEF--RHKNGYAFKEGKQWKNILRNFVT 1344

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSG 534
            V+DI +L    + IL KY I E L ++D++ +L  L FHP R EK+G G  DIKV  H  
Sbjct: 1345 VNDIQKLTTASRCILNKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPK 1404

Query: 535  HKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGSMQ 687
             K+SRCF + R+DGTVEDFSY KC   ALE++DP+ +K+ + +W+     Q
Sbjct: 1405 FKDSRCFHIVRTDGTVEDFSYRKCILRALEVVDPKMSKIQKKKWSARDDAQ 1455


>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1463

 Score =  171 bits (432), Expect = 3e-40
 Identities = 99/231 (42%), Positives = 138/231 (59%), Gaps = 2/231 (0%)
 Frame = +1

Query: 1    CFTNAGASFIKAAKQGAFDELLGSLDALAWGKIPRLGTGAPFEFMYSGKEHKIQKPVDIY 180
            CF+N G SFIKAAK    D L GSLDALAWG  P +GT   F+ +YS K H++ K VD+Y
Sbjct: 1231 CFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVY 1290

Query: 181  NLLASQPSSLDS-DSKIKMPSNDQTLVPEKLGSRRLNRLSSTKVFNVAIPKKLVQKHF-S 354
             LL +   S D  ++KI   +++ +    K GS    R  +   F      K + ++F +
Sbjct: 1291 KLLEA---SFDKPNNKIGFHAHNNS--SGKCGSEF--RHKNGYAFKEGKQWKNILRNFVT 1343

Query: 355  VDDIWRLRRKWKEILFKYPIGEKLQDWDKTMLLMALKFHPHREEKIGNGAVDIKVDQHSG 534
            V+DI +L    + IL KY I E L ++D++ +L  L FHP R EK+G G  DIKV  H  
Sbjct: 1344 VNDIQKLTTASRCILNKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPK 1403

Query: 535  HKESRCFVLERSDGTVEDFSYMKCFQGALELIDPRRAKLYQSRWAKNGSMQ 687
             K+SRCF + R+DGTVEDFSY KC   ALE++DP+ +K+ + +W+     Q
Sbjct: 1404 FKDSRCFHIVRTDGTVEDFSYRKCILRALEVVDPKMSKIQKKKWSARDDAQ 1454