BLASTX nr result
ID: Achyranthes23_contig00025893
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00025893
(516 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 319 2e-85
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 300 1e-79
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 300 1e-79
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 300 1e-79
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 300 1e-79
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 300 1e-79
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 300 1e-79
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 300 1e-79
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 299 2e-79
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 244 7e-63
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 219 3e-55
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 140 2e-31
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 139 4e-31
gb|AHB59866.1| replicase [Narcissus mosaic virus] 139 5e-31
ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus viru... 139 5e-31
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z... 135 4e-30
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 135 4e-30
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 134 1e-29
ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp... 134 1e-29
ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus ... 134 1e-29
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 319 bits (818), Expect = 2e-85
Identities = 153/167 (91%), Positives = 160/167 (95%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLRAD+QR+L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNTRLRGPPGF +PFTRP PVNP+DA+T +FREF
Sbjct: 396 WQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREF 442
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 300 bits (769), Expect = 1e-79
Identities = 143/171 (83%), Positives = 155/171 (90%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL + ++L FFRGRPSFVKLI+ALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFSYTA 513
WQPITLEFPVR VNT LRGPPGF +PFTRP PVNP+DA+T +F+ F A
Sbjct: 396 WQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA 446
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 300 bits (768), Expect = 1e-79
Identities = 142/167 (85%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 300 bits (768), Expect = 1e-79
Identities = 142/167 (85%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 300 bits (768), Expect = 1e-79
Identities = 142/167 (85%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 300 bits (768), Expect = 1e-79
Identities = 142/167 (85%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 300 bits (768), Expect = 1e-79
Identities = 142/167 (85%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 300 bits (768), Expect = 1e-79
Identities = 142/167 (85%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR+ + ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 299 bits (766), Expect = 2e-79
Identities = 141/167 (84%), Positives = 155/167 (92%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI
Sbjct: 276 VPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 335
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL++ I ++L FFRGRPSFVKLIKALD
Sbjct: 336 TLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALD 395
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREF 501
WQPITLEFPVR VNT LRG PGF +PF RP PVNP+DA+T ++F+ F
Sbjct: 396 WQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 244 bits (624), Expect = 7e-63
Identities = 123/168 (73%), Positives = 133/168 (79%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VP IFLPE YNCRTPISKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPSEI
Sbjct: 275 VPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEI 334
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYFEFTA+LDSHTCFEDV L + I R+LQFFRGRPSFVKLIKALD
Sbjct: 335 TLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALD 393
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRAFREFS 504
WQPITLEFPVR V T +RGPPGF NPFT+P PVNPEDAD F++FS
Sbjct: 394 WQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFS 441
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 219 bits (558), Expect = 3e-55
Identities = 106/163 (65%), Positives = 125/163 (76%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E
Sbjct: 275 VPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEA 334
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKAL
Sbjct: 335 TLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQ 394
Query: 361 WQPITLEFPVRTVNTRLRGPPGFHNPFTRPHPVNPEDADTMRA 489
WQP+ LEF V TV R PPGF +P RP PVN DA T A
Sbjct: 395 WQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA 437
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 140 bits (352), Expect = 2e-31
Identities = 68/134 (50%), Positives = 90/134 (67%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P IFLP+K+N R PI KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + SE+
Sbjct: 274 LPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASEL 333
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
+VNYF F A DS TCF D+LSG+L ++L +PL A + F G P F KL+KAL
Sbjct: 334 VHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQ 393
Query: 361 WQPITLEFPVRTVN 402
WQ IT+ V +N
Sbjct: 394 WQDITMVVTVADIN 407
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 139 bits (350), Expect = 4e-31
Identities = 69/138 (50%), Positives = 93/138 (67%), Gaps = 2/138 (1%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P IFLP+++N R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+
Sbjct: 282 MPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREV 341
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRA--DIQRVLQFFRGRPSFVKLIKA 354
TLLVNYF A L S TCF++VLSG + ++L +P A +IQ+ F G F +L++A
Sbjct: 342 TLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEA 399
Query: 355 LDWQPITLEFPVRTVNTR 408
L+W +TL +P +T + R
Sbjct: 400 LEWVDVTLTYPTKTFDNR 417
>gb|AHB59866.1| replicase [Narcissus mosaic virus]
Length = 1630
Score = 139 bits (349), Expect = 5e-31
Identities = 69/143 (48%), Positives = 93/143 (65%), Gaps = 5/143 (3%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P IF P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P EI
Sbjct: 280 LPQIFFPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEI 339
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
L NYF F ++LDS TC+ED+LS N+ RL RPLR +++ ++FF+G+ F KL+ AL
Sbjct: 340 VHLANYFSFVSNLDSITCYEDLLSSNIWTRLTRPLRTAVRKFVEFFKGKQDFDKLLIALK 399
Query: 361 WQPIT-----LEFPVRTVNTRLR 414
WQP + ++F V+ R+R
Sbjct: 400 WQPFSYSLEPVDFTAYFVSRRVR 422
>ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus virus 3]
gi|169219513|dbj|BAG12158.1| RNA dependent RNA
polymerase [Asparagus virus 3]
Length = 1614
Score = 139 bits (349), Expect = 5e-31
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 5/136 (3%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P IF PE N P++KT MQM Y KSVK+ ERDI+AKFRQ+IST+EL+ Y+P EI
Sbjct: 280 MPKIFCPESMNANRPLTKTKAMQMLMYCKSVKQVSERDIYAKFRQIISTQELELYEPDEI 339
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
L NYF F A LDS TC+ED+L +L +RL P+R I + L FFRG+ SF KL+ AL
Sbjct: 340 VHLCNYFNFVAHLDSITCYEDLLGNSLWRRLTIPIRTTITKALDFFRGQQSFSKLLGALK 399
Query: 361 WQPIT-----LEFPVR 393
W+ + ++F VR
Sbjct: 400 WESFSYSLEPIDFTVR 415
>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
Length = 1643
Score = 135 bits (341), Expect = 4e-30
Identities = 67/143 (46%), Positives = 93/143 (65%), Gaps = 5/143 (3%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P +F P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P EI
Sbjct: 280 LPQVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEI 339
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
L NYF F ++LDS TC+ED+LS ++ RL RPLR +++ ++FF+G+ F KL+ AL
Sbjct: 340 VHLANYFFFVSNLDSTTCYEDLLSSDIWMRLTRPLRTAVRKFVEFFKGKQDFDKLLIALK 399
Query: 361 WQPIT-----LEFPVRTVNTRLR 414
WQP + ++F V+ R+R
Sbjct: 400 WQPFSYSLEPVDFTAYFVSRRVR 422
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 135 bits (341), Expect = 4e-30
Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 3/153 (1%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P IFLP ++N R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI
Sbjct: 282 LPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEI 341
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
LVNYF F A + T F+ +L G++I+++ RP+ A + Q G F +L++AL
Sbjct: 342 VHLVNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALS 401
Query: 361 WQPITLE---FPVRTVNTRLRGPPGFHNPFTRP 450
W I L PV+T + R G ++PFT P
Sbjct: 402 WDEIDLTLDVLPVKTHDWRRMGVADSNDPFTYP 434
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 134 bits (337), Expect = 1e-29
Identities = 64/133 (48%), Positives = 88/133 (66%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
VP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+
Sbjct: 288 VPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDEL 347
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
LL NYF + L S E+VL+G+L ++L RP+++ + + G+P F +L++AL
Sbjct: 348 VLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALL 407
Query: 361 WQPITLEFPVRTV 399
W + L PVR V
Sbjct: 408 WTNVDLILPVRYV 420
>ref|NP_040778.1| replicase [Narcissus mosaic virus] gi|139136|sp|P15095.1|RDRP_NMV
RecName: Full=RNA replication protein; AltName: Full=186
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222108|dbj|BAA02891.1| 186K
protein [Narcissus mosaic virus]
Length = 1643
Score = 134 bits (337), Expect = 1e-29
Identities = 67/143 (46%), Positives = 92/143 (64%), Gaps = 5/143 (3%)
Frame = +1
Query: 1 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 180
+P +F P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P EI
Sbjct: 280 LPQVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEI 339
Query: 181 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALD 360
L NYF F +SLDS TC+ED+LS ++ RL RPLR +++ ++ F+G+ F KL+ AL
Sbjct: 340 VHLANYFFFVSSLDSITCYEDLLSSDIWMRLTRPLRTAVRKFVELFKGKQDFDKLLIALK 399
Query: 361 WQPIT-----LEFPVRTVNTRLR 414
WQP + ++F V+ R+R
Sbjct: 400 WQPFSYSLEPVDFTAYFVSRRVR 422
>ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus X]
gi|189458580|emb|CAN88808.1| RNA-dependent RNA
polymerase [Lettuce virus X]
Length = 1708
Score = 134 bits (337), Expect = 1e-29
Identities = 64/136 (47%), Positives = 88/136 (64%)
Frame = +1
Query: 4 PDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEIT 183
P IF P N PI+KT MQM+ Y+K+VK ERDI+AK Q++ T EL+ Y+P E+
Sbjct: 281 PKIFHPASSNANRPITKTKAMQMWLYVKAVKAVTERDIYAKIHQVLPTNELELYEPDELV 340
Query: 184 LLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRADIQRVLQFFRGRPSFVKLIKALDW 363
L NYF F ++L S+TC+ED+LSG LI+RL RP+R + R ++FF GR F KL+ AL W
Sbjct: 341 HLANYFFFLSNLKSYTCYEDLLSGGLIKRLTRPVRTAVTRFIEFFAGRNDFNKLMDALKW 400
Query: 364 QPITLEFPVRTVNTRL 411
+P T T++
Sbjct: 401 EPFTYTLEPAVYKTKV 416