BLASTX nr result
ID: Achyranthes23_contig00025743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00025743
(892 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 269 1e-69
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 268 3e-69
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 261 2e-67
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 261 2e-67
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 261 2e-67
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 257 4e-66
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 251 2e-64
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 251 2e-64
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 245 1e-62
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 240 4e-61
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 239 8e-61
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 237 5e-60
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 233 5e-59
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 233 9e-59
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 233 9e-59
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 231 2e-58
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 226 7e-57
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 213 1e-52
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 212 2e-52
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 211 3e-52
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 269 bits (687), Expect = 1e-69
Identities = 138/270 (51%), Positives = 188/270 (69%), Gaps = 2/270 (0%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
A++I L M FE ++WN+ GR +E+DR R +WD+++ + YHCHV P+G+ RFK
Sbjct: 131 AEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFK 190
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQ--EKESIETDSIMHCPAFNKVAEEGIFVGRKN 361
GP LNKT T LQ+ +GDEN+L+VKF E ++ S+ + + ++NK+A EGIFVG +
Sbjct: 191 GPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNA-SYNKIAREGIFVGLRQ 249
Query: 362 YRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIH 541
YRFFVFKDGGKEEK+K+PTS+ VKCYFV +E A L GK H EAR +FMH H
Sbjct: 250 YRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSA-LSGKTVH--------EARCIFMHAH 299
Query: 542 KATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDG 721
+SV+ YMARFSLILSKT+ L+++ + V ++ ++DE RD+ G+ V D+D K +ILTDG
Sbjct: 300 MVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDG 359
Query: 722 TGFISEDLALRCPHNCYNGSVNNEENAQDI 811
TGFISEDLALRCP+N G N N+ +
Sbjct: 360 TGFISEDLALRCPNNLCRGKYMNNGNSDPL 389
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 268 bits (684), Expect = 3e-69
Identities = 136/273 (49%), Positives = 191/273 (69%), Gaps = 4/273 (1%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFG--RNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCR 181
AD+I Y L M FE +IW+ FG R+ +E+DRV+ ++WD+ + + YHCHVDP+G+ R
Sbjct: 46 ADQIRGYKDLPMETFESKIWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYR 105
Query: 182 FKGPLLNKTATLLQKTVGDENVLIVKFLE--QEKESIETDSIMHCPAFNKVAEEGIFVGR 355
FKGP L+K +LQ+T+GD+N+L+VKF E E+ S+ + + +NKV EGI VG
Sbjct: 106 FKGPYLSKQRNVLQRTLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGL 165
Query: 356 KNYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMH 535
+ YRFFVFKDGGKEEK+KDPT++PVKC+FVC+E AS+ + + K + +AR++FMH
Sbjct: 166 RCYRFFVFKDGGKEEKKKDPTTSPVKCFFVCMESVASVDNQDNILCGKT-IRQARSVFMH 224
Query: 536 IHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILT 715
+ +S+SNYMARFSLILSKT+ L ++ + V ++ + DE CRDK GNAV D K +I T
Sbjct: 225 VDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHT 284
Query: 716 DGTGFISEDLALRCPHNCYNGSVNNEENAQDIQ 814
DGTGFIS DLAL+CP N G+ N + ++
Sbjct: 285 DGTGFISHDLALKCPKNQVKGTCLQASNIERLR 317
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 261 bits (667), Expect = 2e-67
Identities = 132/269 (49%), Positives = 186/269 (69%), Gaps = 4/269 (1%)
Frame = +2
Query: 11 DKIPTYDRLGMREFEIQIWNDFG--RNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRF 184
D+I Y L MR FE +IW FG R+ +E+DRV+ ++WD+ + + YHCHVDP+G+ RF
Sbjct: 47 DQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRF 106
Query: 185 KGPLLNKTATLLQKTVGDENVLIVKF--LEQEKESIETDSIMHCPAFNKVAEEGIFVGRK 358
KGP L+K +LQ+T+GD+N+L+VKF ++ +++S + +NKV EGI VG +
Sbjct: 107 KGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLR 166
Query: 359 NYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHI 538
YRFFVFKDGGKEEK+KDPT++PVKC+FV +E AS+ + L + +AR++FMH+
Sbjct: 167 CYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASI-DNQDNILSGKTIRQARSVFMHV 225
Query: 539 HKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTD 718
+S+SNYMARFSLILSKT+ L ++ + V ++ + DE CRDK GN V D K +I TD
Sbjct: 226 DNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTD 285
Query: 719 GTGFISEDLALRCPHNCYNGSVNNEENAQ 805
GTGFIS DLAL+CP N + G+ N +
Sbjct: 286 GTGFISHDLALKCPKNQFKGTCLRASNIE 314
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 261 bits (667), Expect = 2e-67
Identities = 132/269 (49%), Positives = 186/269 (69%), Gaps = 4/269 (1%)
Frame = +2
Query: 11 DKIPTYDRLGMREFEIQIWNDFG--RNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRF 184
D+I Y L MR FE +IW FG R+ +E+DRV+ ++WD+ + + YHCHVDP+G+ RF
Sbjct: 69 DQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRF 128
Query: 185 KGPLLNKTATLLQKTVGDENVLIVKF--LEQEKESIETDSIMHCPAFNKVAEEGIFVGRK 358
KGP L+K +LQ+T+GD+N+L+VKF ++ +++S + +NKV EGI VG +
Sbjct: 129 KGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLR 188
Query: 359 NYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHI 538
YRFFVFKDGGKEEK+KDPT++PVKC+FV +E AS+ + L + +AR++FMH+
Sbjct: 189 CYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASI-DNQDNILSGKTIRQARSVFMHV 247
Query: 539 HKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTD 718
+S+SNYMARFSLILSKT+ L ++ + V ++ + DE CRDK GN V D K +I TD
Sbjct: 248 DNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTD 307
Query: 719 GTGFISEDLALRCPHNCYNGSVNNEENAQ 805
GTGFIS DLAL+CP N + G+ N +
Sbjct: 308 GTGFISHDLALKCPKNQFKGTCLRASNIE 336
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 261 bits (667), Expect = 2e-67
Identities = 138/275 (50%), Positives = 187/275 (68%), Gaps = 10/275 (3%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
A++I L M FE ++WN+ GR +E+DR R +WD+++ + YHCHV P+G+ RFK
Sbjct: 131 AEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFK 190
Query: 188 --------GPLLNKTATLLQKTVGDENVLIVKFLEQ--EKESIETDSIMHCPAFNKVAEE 337
GP LNKT T LQ+ +GDEN+L+VKF E ++ S+ + + ++NK+A E
Sbjct: 191 VCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNA-SYNKIARE 249
Query: 338 GIFVGRKNYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEA 517
GIFVG + YRFFVFKDGGKEEK+K+PTS+ VKCYFV +E A L GK H EA
Sbjct: 250 GIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSA-LSGKTVH--------EA 299
Query: 518 RALFMHIHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDK 697
R +FMH H +SV+ YMARFSLILSKT+ L+++ + V ++ ++DE RD+ G+ V D+D
Sbjct: 300 RCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDW 359
Query: 698 KAMILTDGTGFISEDLALRCPHNCYNGSVNNEENA 802
K +ILTDGTGFISEDLALRCP+N G N N+
Sbjct: 360 KPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNS 394
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 257 bits (657), Expect = 4e-66
Identities = 130/267 (48%), Positives = 175/267 (65%), Gaps = 1/267 (0%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
A++I + L M +FE Q+W FG ++DR +WD+ + + Y CHV PEG+ RFK
Sbjct: 149 AEEIRSLKNLSMVQFEKQVWQRFGEKYVDQEDRRIYHDWDSGKTHIYRCHVSPEGSFRFK 208
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPA-FNKVAEEGIFVGRKNY 364
GP L K LQK +GD+NVL+VKF E+E E S H A ++K+ EGI VG + Y
Sbjct: 209 GPYLEKPKKHLQKVLGDDNVLMVKFAEEEAERFSIGSRDHYYAGYSKICREGILVGLRRY 268
Query: 365 RFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHK 544
FFVFKDGGKEEK+KDPTS+PVKC+F+ + A + S+ L +SEAR LFMH H
Sbjct: 269 CFFVFKDGGKEEKKKDPTSSPVKCFFIRIHSDACIDQNVSYILSGRTISEARKLFMHAHT 328
Query: 545 ATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGT 724
+SVSNYM RFSLILS T++L ++ + V ++++EDE C+D+ GN + +D K +I TDGT
Sbjct: 329 VSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIEDEYCQDESGNPIY-RDGKPLIYTDGT 387
Query: 725 GFISEDLALRCPHNCYNGSVNNEENAQ 805
GFISEDLAL CP N N+ N +
Sbjct: 388 GFISEDLALLCPKNLEKWKRINDNNIE 414
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 251 bits (642), Expect = 2e-64
Identities = 133/299 (44%), Positives = 187/299 (62%), Gaps = 4/299 (1%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
AD+I L M FE ++W GR ++DR + WD+ + + YHCH+ +GNC FK
Sbjct: 178 ADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFK 237
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQ----EKESIETDSIMHCPAFNKVAEEGIFVGR 355
GP LN+T T LQ+ +GD+N+L+VKF E+ + DS +N++A EGI VG
Sbjct: 238 GPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSK---YNEIAREGILVGL 294
Query: 356 KNYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMH 535
+ Y FFVFKDGGKEEK+KDP+++PVKCYFV +E A + + L V EAR +FMH
Sbjct: 295 RCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMH 354
Query: 536 IHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILT 715
+ +SV+NYM+R SLILSKT+ L ++F+ + +E +EDE CRDK GN V KD +A+I T
Sbjct: 355 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHT 413
Query: 716 DGTGFISEDLALRCPHNCYNGSVNNEENAQDIQGPLEAFRFAHGFSELSELNSLTAAPP 892
DGTGFISEDLAL+CP Y N+++ + ++ FS+++ S PP
Sbjct: 414 DGTGFISEDLALKCPTYVYKEKCTNDDST---ERSIDRKELEANFSDVARTESHYGEPP 469
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 251 bits (642), Expect = 2e-64
Identities = 133/299 (44%), Positives = 187/299 (62%), Gaps = 4/299 (1%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
AD+I L M FE ++W GR ++DR + WD+ + + YHCH+ +GNC FK
Sbjct: 180 ADEIRGMRDLQMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFK 239
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQ----EKESIETDSIMHCPAFNKVAEEGIFVGR 355
GP LN+T T LQ+ +GD+N+L+VKF E+ + DS +N++A EGI VG
Sbjct: 240 GPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSK---YNEIAREGILVGL 296
Query: 356 KNYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMH 535
+ Y FFVFKDGGKEEK+KDP+++PVKCYFV +E A + + L V EAR +FMH
Sbjct: 297 RCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMH 356
Query: 536 IHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILT 715
+ +SV+NYM+R SLILSKT+ L ++F+ + +E +EDE CRDK GN V KD +A+I T
Sbjct: 357 VRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHT 415
Query: 716 DGTGFISEDLALRCPHNCYNGSVNNEENAQDIQGPLEAFRFAHGFSELSELNSLTAAPP 892
DGTGFISEDLAL+CP Y N+++ + ++ FS+++ S PP
Sbjct: 416 DGTGFISEDLALKCPTYVYKEKCTNDDST---ERSIDRKELEANFSDVARTESHYGEPP 471
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 245 bits (626), Expect = 1e-62
Identities = 129/274 (47%), Positives = 180/274 (65%), Gaps = 1/274 (0%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
A+ I + L M FE +W GR +DR +WD+ + YHC+V+ +G+ RFK
Sbjct: 577 AEAIRHWKDLPMVMFESTVWEHLGRKCISTEDRRLYFDWDSGSTHVYHCYVNVDGSYRFK 636
Query: 188 GPLLNKTA-TLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPAFNKVAEEGIFVGRKNY 364
GP L K TLLQK +GD+NVL+VKF ++E + ++ + + P + KVA EGI VG + Y
Sbjct: 637 GPYLYKIRRTLLQKELGDDNVLMVKFAKEEVQRGQSGACHNYPTYMKVAREGILVGLRRY 696
Query: 365 RFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHK 544
RFFVFKDGG EEK+K+PTS+PVKCYFV V A++ + L M + EAR LFMH H
Sbjct: 697 RFFVFKDGGNEEKKKNPTSSPVKCYFVRVASDAAIDKGVYYRLSHMTMYEARCLFMHAHT 756
Query: 545 ATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGT 724
S+ NYMARFSLILSKT++L +++ V+VE++++E C D+ GN + +D+K +I TDGT
Sbjct: 757 LASIDNYMARFSLILSKTMSLKADWSLVKVEIIDEEYCLDESGNCIY-RDEKPLIHTDGT 815
Query: 725 GFISEDLALRCPHNCYNGSVNNEENAQDIQGPLE 826
GFISEDLAL CP G ++E+ + + P E
Sbjct: 816 GFISEDLALLCPKIEAKGQWISDEHMKGLPDPDE 849
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 240 bits (613), Expect = 4e-61
Identities = 140/299 (46%), Positives = 184/299 (61%), Gaps = 4/299 (1%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRN-ICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRF 184
AD I + L M FE IW FG++ I + DR ++WD+ + Y C+V +G+ RF
Sbjct: 138 ADCIRSLKDLPMATFEKTIWEAFGKDHIYSQSDRQVYVDWDSGRTHVYQCYVSSDGSLRF 197
Query: 185 KGPLLNKTATLLQKTVGDENVLIVKFLEQE-KESIETDSIMHCPAFNKVAEEGIFVGRKN 361
KGP+L T T LQ+++GD+NVL+VKF E +I T + + K +EGI VG +
Sbjct: 198 KGPILQSTQTHLQRSLGDDNVLLVKFAENGIANNIRTSAEEAYRLYGKFGKEGINVGLRL 257
Query: 362 YRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIH 541
YRFFVFKDGGKEEK+KDPTS+ VKCYFV ++ S+ G ++ L VSEAR LFMH H
Sbjct: 258 YRFFVFKDGGKEEKKKDPTSSSVKCYFVRMQSCWSIDGSANYILSNKTVSEARGLFMHAH 317
Query: 542 KATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDG 721
S+ YMARFSLILSKT LN++ V V+ ++D C+D+ GN + D ++K ILTDG
Sbjct: 318 LLPSLDKYMARFSLILSKTFKLNIDLATVNVQTIQDVYCQDENGNIIYD-NEKPRILTDG 376
Query: 722 TGFISEDLALRCPHNCYNGSVNNEEN--AQDIQGPLEAFRFAHGFSELSELNSLTAAPP 892
TGFIS DLAL CP++ G NN EN Q+I LE E +EL T PP
Sbjct: 377 TGFISGDLALLCPNSVCKG--NNLENNYIQEINNLLELEDMCKEMGE-TELKLTTHQPP 432
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 239 bits (611), Expect = 8e-61
Identities = 137/296 (46%), Positives = 179/296 (60%), Gaps = 3/296 (1%)
Frame = +2
Query: 14 KIPTYDRLGMREFEIQIWNDFGRN-ICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFKG 190
KI + L M +FE IW DFG I + DR +W++ + Y C V P+GN RFKG
Sbjct: 154 KIRSLKDLPMAKFEKTIWEDFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKG 213
Query: 191 PLLNKTATLLQKTVGDENVLIVKFLEQEK-ESIETDSIMHCPAFNKVAEEGIFVGRKNYR 367
P+L T T LQKT+GD+NVL+VKF E ++ T + + K +EGI VG + YR
Sbjct: 214 PILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYR 273
Query: 368 FFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHK- 544
FFVFKDGG EEK+KDPTS+ VKCYFV ++ S + L VSEAR LFMH H
Sbjct: 274 FFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHML 333
Query: 545 ATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGT 724
+++ YMARFSLILSKT+ LN++ V V+ + DE C+D GN + D ++K ILTDGT
Sbjct: 334 LPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANGNIMVD-NEKPRILTDGT 392
Query: 725 GFISEDLALRCPHNCYNGSVNNEENAQDIQGPLEAFRFAHGFSELSELNSLTAAPP 892
GFIS DLAL CP+N Y GS Q+I +E ++ E +L+ T PP
Sbjct: 393 GFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLS--THEPP 446
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 237 bits (604), Expect = 5e-60
Identities = 122/267 (45%), Positives = 168/267 (62%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
AD+I + L M +E +W+ GR C + DR RM+ WD+ + +YY CHV P+G+ FK
Sbjct: 170 ADEIRLWKDLPMVAYEAAVWDRLGRRYCPQTDR-RMLQWDSGKTHYYQCHVAPDGSYTFK 228
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPAFNKVAEEGIFVGRKNYR 367
GPLL T T L K +GDENVL VKF + K S T S + ++A+ GI +G + Y+
Sbjct: 229 GPLLEHTGTHLHKVLGDENVLTVKFADVPKNS-STYSNDRYFTYKEIAKNGIMIGLRRYQ 287
Query: 368 FFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHKA 547
FFVFKDGGKEEK+KD ++ VKCYF+ + AS + + + EAR FMH+H+A
Sbjct: 288 FFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRA 347
Query: 548 TSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGTG 727
+++NYMARFSLILSKT TL ++ + + ++D C D+ G V DK+KK I +DGTG
Sbjct: 348 PTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTG 407
Query: 728 FISEDLALRCPHNCYNGSVNNEENAQD 808
+ISEDLA CP N + G EN Q+
Sbjct: 408 YISEDLARMCPLNIFKGKCLRSENIQE 434
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 233 bits (595), Expect = 5e-59
Identities = 123/273 (45%), Positives = 172/273 (63%), Gaps = 6/273 (2%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
AD+I + L M E+E +W+ GR+ C +KDR RM+ WD+ + +YY C+V P G+ FK
Sbjct: 160 ADEIRLWKDLPMVEYEAAVWDRLGRHYCPQKDR-RMLQWDSGKTHYYQCNVAPNGSYTFK 218
Query: 188 ------GPLLNKTATLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPAFNKVAEEGIFV 349
GPLL T T L K +GD+NVL VKF + +K S T SI H + +A+ GI +
Sbjct: 219 VLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSS-STYSIDHYFTYKGIAKNGIMI 277
Query: 350 GRKNYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALF 529
G + Y+FFVFKDGGKEEK+KD ++ VKCYF+ + A + + L + EAR F
Sbjct: 278 GLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHF 337
Query: 530 MHIHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMI 709
MH+H+A +++NYMARFSLILSKT TL ++ + + ++D C D+ G V DK+KK I
Sbjct: 338 MHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCI 397
Query: 710 LTDGTGFISEDLALRCPHNCYNGSVNNEENAQD 808
+DGTG+ISEDLA CP N + G E+ Q+
Sbjct: 398 HSDGTGYISEDLARMCPLNIFKGKCLRSESIQE 430
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 233 bits (593), Expect = 9e-59
Identities = 128/290 (44%), Positives = 178/290 (61%), Gaps = 4/290 (1%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEK-DRVRMMNWDTEERYYYHCHVDPEGNCRF 184
A+ + + L M+ FE +IW G+ + DR+ ++WD+ + Y C V P G+ RF
Sbjct: 163 AEYVRSLKELTMKNFEKEIWETVGQKYIERPTDRLVYLDWDSGRTHIYQCFVSPNGSLRF 222
Query: 185 KGPLLNKTATLLQKTVGDENVLIVKFLE-QEKESIETDSIMHCPAFNKVAEEGIFVGRKN 361
KGP+L T T LQK++GD+NVL+VKF E Q ET + + K +EG+ VG +
Sbjct: 223 KGPILQHTRTHLQKSLGDDNVLLVKFAEDQYARKSETSAQKAAKHYEKFGKEGLRVGLRL 282
Query: 362 YRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIH 541
YRFFVFK GGKEEK+KDPT++ VKCYFV E S + S+ L + E+R+LFMH H
Sbjct: 283 YRFFVFKVGGKEEKKKDPTTSSVKCYFVRTESSCSTDERESYILSNRTMFESRSLFMHAH 342
Query: 542 KATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDG 721
++ YMARFSLILSKT LN+++ V V+ + D C+D++GN V +K+ ILTDG
Sbjct: 343 MLPNIDKYMARFSLILSKTYKLNVDWTTVSVKTIPDVCCQDEHGNTVYHNEKRC-ILTDG 401
Query: 722 TGFISEDLALRCPHNCYNGSVNNEENAQDIQG--PLEAFRFAHGFSELSE 865
TGFISEDLA+ CP+N GS + ++I LE A G + LS+
Sbjct: 402 TGFISEDLAVLCPNNVLKGSNLKNTHIKEISNLVKLEDMSKAMGEAALSK 451
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 233 bits (593), Expect = 9e-59
Identities = 117/243 (48%), Positives = 165/243 (67%), Gaps = 1/243 (0%)
Frame = +2
Query: 107 VRMMNWDTEERYYYHCHVDPEGNCRFKGPLLNKTATLLQKTVGDENVLIVKFLEQEKES- 283
V+ ++WD + + YHCHV +G+CRFKGP LN T T LQ+ +GD+NVL+VKF E + ++
Sbjct: 254 VQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTP 313
Query: 284 IETDSIMHCPAFNKVAEEGIFVGRKNYRFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFA 463
+ S A++K+A +GI +G + Y FFVFKDGGKEEK+K+PT++ VKCYFV +E A
Sbjct: 314 LSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDA 373
Query: 464 SLLGKPSHHLEKMPVSEARALFMHIHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVL 643
+ + L V EAR+LFMH H +S+++YMARFSLILSKTI L ++ + V V+ +
Sbjct: 374 YIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRI 433
Query: 644 EDELCRDKYGNAVCDKDKKAMILTDGTGFISEDLALRCPHNCYNGSVNNEENAQDIQGPL 823
D C+D YGN + +D K +I TDGTGFISEDLAL CP N + G ++ + + I +
Sbjct: 434 GDIPCKDIYGNVIY-RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRI 492
Query: 824 EAF 832
AF
Sbjct: 493 PAF 495
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 231 bits (590), Expect = 2e-58
Identities = 121/242 (50%), Positives = 163/242 (67%), Gaps = 2/242 (0%)
Frame = +2
Query: 41 MREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFKGPLLNKTA-TL 217
M+ FE +W GRN + +WD+ + Y YHC V +G+ +FKGP LN T TL
Sbjct: 1 MQLFETTVWEALGRNYIGTRHPT--FDWDSGKTYVYHCEVSVDGSYKFKGPCLNNTKRTL 58
Query: 218 LQKTVGDENVLIVKFLEQEKESIETDSIMHCPA-FNKVAEEGIFVGRKNYRFFVFKDGGK 394
LQK +GD+NVL+VKF + E + T + A ++KVA EGI VG + Y+FFVFKDGG
Sbjct: 59 LQKVLGDDNVLMVKFSDVVTERVPTAIKDNNYANYSKVAREGILVGLRRYQFFVFKDGGN 118
Query: 395 EEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHKATSVSNYMAR 574
+EK+K+PTS+PVKCYF+CV A++ + + E R +FMH H +SVSNYMAR
Sbjct: 119 KEKKKNPTSSPVKCYFICVGSNAAIDRSEDYKFSNRKIHETRCIFMHAHTVSSVSNYMAR 178
Query: 575 FSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGTGFISEDLALR 754
FSLILSKT +L ++++ V+VE ++DE C D+ GN + D+D K +I TDGTGFISEDLAL
Sbjct: 179 FSLILSKTESLEVDWSLVKVEDIDDEYCLDESGNRI-DRDGKPLIHTDGTGFISEDLALL 237
Query: 755 CP 760
CP
Sbjct: 238 CP 239
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 226 bits (577), Expect = 7e-57
Identities = 116/270 (42%), Positives = 163/270 (60%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
A++I + L M +E +W+ GR C + D R++ WD+ + +YY CHV P+G+ FK
Sbjct: 174 AEEIRRWKDLPMVAYEAAVWDSLGRKFCPQTDE-RVLQWDSGKTHYYQCHVAPDGSYTFK 232
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPAFNKVAEEGIFVGRKNYR 367
GPLL T T L K +GDENVL VKF +K S S + + +A+ GI VG + Y+
Sbjct: 233 GPLLESTGTHLHKVLGDENVLTVKFANVQKNSSTYCSDSYF-TYKGIAKNGIMVGLRRYK 291
Query: 368 FFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHKA 547
FFVFKDGGK++K KD ++ KCYF+ + AS+ + + + EAR FMH+H
Sbjct: 292 FFVFKDGGKDDKNKDVSTKRAKCYFIRTDSTASIDMEKPYIFSGKSIHEARMHFMHVHTL 351
Query: 548 TSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGTG 727
S++NYMARFSLILSKT L ++ V E+++D C D+ G V DK+KK I +DGTG
Sbjct: 352 PSLANYMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTG 411
Query: 728 FISEDLALRCPHNCYNGSVNNEENAQDIQG 817
+ISEDLA CP N Y G + ++ G
Sbjct: 412 YISEDLAQMCPVNIYKGKCLRSDKIKEACG 441
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 213 bits (541), Expect = 1e-52
Identities = 114/271 (42%), Positives = 167/271 (61%), Gaps = 1/271 (0%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGR-NICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRF 184
AD+I + L M +E +W+ R + Q +RV + WD+E+ +YY CHV +G+ F
Sbjct: 177 ADEIRQWKDLPMVAYEAAVWDRLSRLELSQTVERVSL-EWDSEKTHYYQCHVASDGSYTF 235
Query: 185 KGPLLNKTATLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPAFNKVAEEGIFVGRKNY 364
KGPLL T T L K +GDENVL VKF + +K S T S A+ ++A+ GI VG + Y
Sbjct: 236 KGPLLEPTGTHLHKVLGDENVLTVKFADVQKNS-STYSNDRYSAYKRIAKNGIMVGLRRY 294
Query: 365 RFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHK 544
+FFVFKD GK EK+KD ++N VKCYF+ + A+ ++ ++EAR FMH+H
Sbjct: 295 QFFVFKDVGKAEKKKDFSTNGVKCYFIRTDSTAANDMGKAYIFSGKTINEARMHFMHVHT 354
Query: 545 ATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGT 724
S++ YMARFSLILSKT L ++ + + +++ C D+ N V DK+K+ + +DGT
Sbjct: 355 LPSLAKYMARFSLILSKTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGT 414
Query: 725 GFISEDLALRCPHNCYNGSVNNEENAQDIQG 817
G+ISEDLA CP N + G +++N Q+ G
Sbjct: 415 GYISEDLARMCPVNIFKGKCLSKKNIQESCG 445
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 212 bits (539), Expect = 2e-52
Identities = 109/256 (42%), Positives = 156/256 (60%), Gaps = 2/256 (0%)
Frame = +2
Query: 11 DKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFKG 190
+KI T+ L M+ FE ++W G + DR R ++WD+ + Y CHVDP GN FKG
Sbjct: 158 EKIRTWKDLSMQCFEYEVWRTVGERYASQTDR-RNLDWDSGKAENYQCHVDPVGNFSFKG 216
Query: 191 PLLNKTATLLQKTVGDENVLIVKFLEQ--EKESIETDSIMHCPAFNKVAEEGIFVGRKNY 364
P L T T L++ +GD+ VL VKF E+ ++ E + F ++A++GI VG + Y
Sbjct: 217 PFLESTQTHLRRVLGDDKVLTVKFAEEMVDERRGEFNLSRSKNIFRRIAKDGILVGLRRY 276
Query: 365 RFFVFKDGGKEEKRKDPTSNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFMHIHK 544
FFVFKDGGKEEKRK+ + VKCYFVC++ A + L + EAR++FM +H
Sbjct: 277 HFFVFKDGGKEEKRKNANTTGVKCYFVCMKSDAESDMHTPYILSNKTIQEARSMFMDVHT 336
Query: 545 ATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMILTDGT 724
+++ YMARFSLILSKTI L ++ V +E + D+ C D + V D++ + +I TDGT
Sbjct: 337 VPNLAKYMARFSLILSKTIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLIHTDGT 396
Query: 725 GFISEDLALRCPHNCY 772
GFISEDL + N +
Sbjct: 397 GFISEDLMSKFSKNIF 412
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 211 bits (537), Expect = 3e-52
Identities = 112/272 (41%), Positives = 156/272 (57%), Gaps = 5/272 (1%)
Frame = +2
Query: 8 ADKIPTYDRLGMREFEIQIWNDFGRNICQEKDRVRMMNWDTEERYYYHCHVDPEGNCRFK 187
AD I L M +FE +IWN FG+ E DR + ++W+ + + Y+CH+ G C FK
Sbjct: 193 ADDIVRKKNLSMTDFESEIWNAFGKAYYAESDRSKYVDWNCRKTHIYYCHIKQNGQCTFK 252
Query: 188 GPLLNKTATLLQKTVGDENVLIVKFLEQEKESIETDSIMHCPAFNKVAEEGIFVGRKNYR 367
GP LN T LQ+ +GD+NVL+VKF+E N + EEGI VG + YR
Sbjct: 253 GPYLNTARTHLQRALGDDNVLLVKFVEDTS------------CANMIVEEGILVGLRRYR 300
Query: 368 FFVFKDGGKEEKRKDPT-----SNPVKCYFVCVEGFASLLGKPSHHLEKMPVSEARALFM 532
FFV+KD +EK+K P + +KCYFV E + S+ +S+AR FM
Sbjct: 301 FFVYKDD--KEKKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYVFSTKRISQARCQFM 358
Query: 533 HIHKATSVSNYMARFSLILSKTITLNLNFNDVRVEVLEDELCRDKYGNAVCDKDKKAMIL 712
H+H ++++ Y AR SLILSKTI L +N V +E +ED LCRD+ G + D+D + I
Sbjct: 359 HVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIH 418
Query: 713 TDGTGFISEDLALRCPHNCYNGSVNNEENAQD 808
TDGTGFISEDLA+ CP + +EN ++
Sbjct: 419 TDGTGFISEDLAMHCPKDFVKAEYIKDENYEN 450