BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00023581
         (1286 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      817   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              672   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   672   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   667   0.0  
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...   662   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...   662   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   662   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   658   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   658   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   657   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   654   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   651   0.0  
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...   649   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...   647   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   646   0.0  
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...   644   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   642   0.0  
ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thal...   640   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   640   0.0  
dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA pol...   640   0.0  

>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  817 bits (2111), Expect = 0.0
 Identities = 389/428 (90%), Positives = 416/428 (97%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAALQIG AIEQEIKIH+FLEKTKN+RKNAS +PEDLLKEKEIQRNRVKSL+KRKRLFEA
Sbjct: 263  QAALQIGTAIEQEIKIHSFLEKTKNIRKNASDLPEDLLKEKEIQRNRVKSLIKRKRLFEA 322

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
            A+LVTSED KSWSQDTQAKLGSRLIELLI+TAY+QHPTSQSAD PPDVRPAFRHKFKIL 
Sbjct: 323  AKLVTSEDSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILN 382

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
            NELGQQ+VKRYGVIECDPLVLKGIDRSARYM+IPYVPMLIPPKNW+GYDKGGYLFLPS+V
Sbjct: 383  NELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYV 442

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGS+KQQ+AMRKTPPQQMQKVFEALNTLG TKWRINRKVLGVVE+LWASGGNI GLV
Sbjct: 443  MRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIGGLV 502

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            NC+DVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCD+ELK+SVAQKM+DEEGFY
Sbjct: 503  NCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEEGFY 562

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA GRPLG++GL WLKIHLANVYAGGVDK
Sbjct: 563  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDK 622

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LSYEAR AFVEN+L E+FDSA+NPI GNRWWL+AEDPFQCLAACIDL+GALNSSSPH+FI
Sbjct: 623  LSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFI 682

Query: 26   SHLPIHQD 3
            S+LPIHQD
Sbjct: 683  SYLPIHQD 690


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  672 bits (1734), Expect = 0.0
 Identities = 317/429 (73%), Positives = 376/429 (87%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNAS-GMPEDLLKEKEIQRNRVKSLVKRKRLFE 1110
            QAA+QIG AIEQE++IH+FLEKTKN  ++ + G  ++ L+EKEI R RVKS +++K++ E
Sbjct: 81   QAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGLREKEILRKRVKSFIRKKKIIE 140

Query: 1109 AARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKIL 930
              +LV +E+I  W +DTQAKLGSRLIELL ETAYVQ P +QSAD PPDVRPAFRH FK +
Sbjct: 141  VQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTV 200

Query: 929  TNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSF 750
            T E GQ+  ++YGVIECDPLVL G+DR+A++MVIPYVPMLIPPK W+GYDKGGYLFLPS+
Sbjct: 201  TKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSY 260

Query: 749  VMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGL 570
            VMRTHGS+KQQ+A++  P +Q+QKVFEAL+TLG TKWRINR+VL VVES+WA GGN+ GL
Sbjct: 261  VMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGL 320

Query: 569  VNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGF 390
            V+ E+VPLPEKP TED  EI  WKW+ RKAKKIN+ERH+LRCD E+KLSVA+KM+DEEGF
Sbjct: 321  VDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGF 380

Query: 389  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVD 210
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG+SGLRWLKI LAN+YAGGV+
Sbjct: 381  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVE 440

Query: 209  KLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTF 30
            KLSY+ R+AFV+N+L ++FDSA NP+ GNRWWLTAEDPFQCLAACI+LS AL SSSPHT 
Sbjct: 441  KLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTV 500

Query: 29   ISHLPIHQD 3
            ISHLPIHQD
Sbjct: 501  ISHLPIHQD 509


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  672 bits (1734), Expect = 0.0
 Identities = 317/429 (73%), Positives = 376/429 (87%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNAS-GMPEDLLKEKEIQRNRVKSLVKRKRLFE 1110
            QAA+QIG AIEQE++IH+FLEKTKN  ++ + G  ++ L+EKEI R RVKS +++K++ E
Sbjct: 252  QAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGLREKEILRKRVKSFIRKKKIIE 311

Query: 1109 AARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKIL 930
              +LV +E+I  W +DTQAKLGSRLIELL ETAYVQ P +QSAD PPDVRPAFRH FK +
Sbjct: 312  VQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTV 371

Query: 929  TNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSF 750
            T E GQ+  ++YGVIECDPLVL G+DR+A++MVIPYVPMLIPPK W+GYDKGGYLFLPS+
Sbjct: 372  TKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSY 431

Query: 749  VMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGL 570
            VMRTHGS+KQQ+A++  P +Q+QKVFEAL+TLG TKWRINR+VL VVES+WA GGN+ GL
Sbjct: 432  VMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGL 491

Query: 569  VNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGF 390
            V+ E+VPLPEKP TED  EI  WKW+ RKAKKIN+ERH+LRCD E+KLSVA+KM+DEEGF
Sbjct: 492  VDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGF 551

Query: 389  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVD 210
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG+SGLRWLKI LAN+YAGGV+
Sbjct: 552  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVE 611

Query: 209  KLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTF 30
            KLSY+ R+AFV+N+L ++FDSA NP+ GNRWWLTAEDPFQCLAACI+LS AL SSSPHT 
Sbjct: 612  KLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTV 671

Query: 29   ISHLPIHQD 3
            ISHLPIHQD
Sbjct: 672  ISHLPIHQD 680


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  667 bits (1722), Expect = 0.0
 Identities = 317/430 (73%), Positives = 372/430 (86%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPED--LLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+ IG AIEQE++IH+FLEKTKNL+K  +G+ ++  L KEKEI R RV  L++RKRL 
Sbjct: 248  QAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKEKEILRKRVNGLIRRKRLN 307

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            E  +L+  E++K W +D QAKLGSRLIELL ETAYVQ P SQ AD+PPDVRPAFRH+FK 
Sbjct: 308  EVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLADSPPDVRPAFRHRFKA 367

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
            +    GQ++VK YGVIECDPLVL G+D++A++M+IPYVPML+PPK W+GYDKGG+LFLPS
Sbjct: 368  VAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPS 427

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            +VMRTHGS+KQ +AMR     QMQKVFEAL+ LG TKWR+N+KVL VVES+WA GGNIAG
Sbjct: 428  YVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAG 487

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LVN EDVP+P+K  +ED  EI  WKWSVRKAKKIN+ERH+ RCD ELKLSVA+KM+DEEG
Sbjct: 488  LVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDEEG 547

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG+SGLRWLKIHLAN+YAGGV
Sbjct: 548  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGV 607

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KLSYE R+AFV+N++ +IFDSA+NP+ GNRWWLTAEDP QCLAACI+LS ALNS SPHT
Sbjct: 608  EKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHT 667

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 668  VISHLPIHQD 677


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  662 bits (1707), Expect = 0.0
 Identities = 310/429 (72%), Positives = 371/429 (86%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNL-RKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFE 1110
            QAA+ IG AIEQE++IHNFLEKTKN  RK  +   + L KEKEI + RV SL++R+RL E
Sbjct: 251  QAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVE 310

Query: 1109 AARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKIL 930
              +LV +E+IK W +D QAKLGSRL+ELL ETAYVQ P  QS D+PPDV+PAFRHKFK +
Sbjct: 311  VQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTI 370

Query: 929  TNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSF 750
            + + G++M+KRYGVIECDPL+L G+DRSA++M+IPYVPML+PPK W+GYDKGGYLFLPS+
Sbjct: 371  SKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSY 430

Query: 749  VMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGL 570
            VMRTHGS+KQQ+A++    ++MQKVFEAL+TLG TKWR+N+KVL VVES+WASGGNIAGL
Sbjct: 431  VMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGL 490

Query: 569  VNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGF 390
            V+  D+P+PEKP +ED  E   WKWSVRKA KINRERH+ RCD ELKLSVA+KM +EEGF
Sbjct: 491  VDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGF 550

Query: 389  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVD 210
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG SGL WLKIHLAN++AGGV+
Sbjct: 551  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVE 610

Query: 209  KLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTF 30
            KLS++ R+AFV+N+L +IFDSA NPI GNRWWLTAEDPFQCLAACI+LS +L SSSPH+ 
Sbjct: 611  KLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSV 670

Query: 29   ISHLPIHQD 3
            +S+LPIHQD
Sbjct: 671  LSYLPIHQD 679


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  662 bits (1707), Expect = 0.0
 Identities = 310/429 (72%), Positives = 371/429 (86%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNL-RKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFE 1110
            QAA+ IG AIEQE++IHNFLEKTKN  RK  +   + L KEKEI + RV SL++R+RL E
Sbjct: 129  QAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVE 188

Query: 1109 AARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKIL 930
              +LV +E+IK W +D QAKLGSRL+ELL ETAYVQ P  QS D+PPDV+PAFRHKFK +
Sbjct: 189  VQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTI 248

Query: 929  TNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSF 750
            + + G++M+KRYGVIECDPL+L G+DRSA++M+IPYVPML+PPK W+GYDKGGYLFLPS+
Sbjct: 249  SKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSY 308

Query: 749  VMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGL 570
            VMRTHGS+KQQ+A++    ++MQKVFEAL+TLG TKWR+N+KVL VVES+WASGGNIAGL
Sbjct: 309  VMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGL 368

Query: 569  VNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGF 390
            V+  D+P+PEKP +ED  E   WKWSVRKA KINRERH+ RCD ELKLSVA+KM +EEGF
Sbjct: 369  VDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGF 428

Query: 389  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVD 210
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG SGL WLKIHLAN++AGGV+
Sbjct: 429  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVE 488

Query: 209  KLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTF 30
            KLS++ R+AFV+N+L +IFDSA NPI GNRWWLTAEDPFQCLAACI+LS +L SSSPH+ 
Sbjct: 489  KLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSV 548

Query: 29   ISHLPIHQD 3
            +S+LPIHQD
Sbjct: 549  LSYLPIHQD 557


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  662 bits (1707), Expect = 0.0
 Identities = 310/429 (72%), Positives = 371/429 (86%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNL-RKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFE 1110
            QAA+ IG AIEQE++IHNFLEKTKN  RK  +   + L KEKEI + RV SL++R+RL E
Sbjct: 251  QAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVE 310

Query: 1109 AARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKIL 930
              +LV +E+IK W +D QAKLGSRL+ELL ETAYVQ P  QS D+PPDV+PAFRHKFK +
Sbjct: 311  VQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTI 370

Query: 929  TNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSF 750
            + + G++M+KRYGVIECDPL+L G+DRSA++M+IPYVPML+PPK W+GYDKGGYLFLPS+
Sbjct: 371  SKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSY 430

Query: 749  VMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGL 570
            VMRTHGS+KQQ+A++    ++MQKVFEAL+TLG TKWR+N+KVL VVES+WASGGNIAGL
Sbjct: 431  VMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGL 490

Query: 569  VNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGF 390
            V+  D+P+PEKP +ED  E   WKWSVRKA KINRERH+ RCD ELKLSVA+KM +EEGF
Sbjct: 491  VDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGF 550

Query: 389  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVD 210
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG SGL WLKIHLAN++AGGV+
Sbjct: 551  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVE 610

Query: 209  KLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTF 30
            KLS++ R+AFV+N+L +IFDSA NPI GNRWWLTAEDPFQCLAACI+LS +L SSSPH+ 
Sbjct: 611  KLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSV 670

Query: 29   ISHLPIHQD 3
            +S+LPIHQD
Sbjct: 671  LSYLPIHQD 679


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  658 bits (1697), Expect = 0.0
 Identities = 309/430 (71%), Positives = 371/430 (86%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNA--SGMPEDLLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+ IG AIEQEI+IH+FLEKTKN ++    +   E L KEKE+ R RV SL+K KR+ 
Sbjct: 281  QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 340

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            EA +L+ +E+ K W +DTQAKLGSRL+ELLIETAYVQHP + +  +PPDVRPAFRH+FK 
Sbjct: 341  EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 400

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
            +    GQ+  KRYGV+ECDPLVL G+DRSA++M+IPYVPML+PPK W+GY+KGGYLFLPS
Sbjct: 401  ILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 460

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            +VMRTHGS+KQQEA++      M+KVFEAL+TLG TKWR+N++VL V+ES+W SGGNIAG
Sbjct: 461  YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 520

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LV+  DVP+PEKPL+ED  E+  WKWSVRKAKKIN+ERH+ RCD ELKLSVA++M+DEEG
Sbjct: 521  LVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 580

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLG+SGLRWLKIHLAN+++GGV
Sbjct: 581  FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 640

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KLS++ R+AFVEN+L EIFDSA NPI G+RWWLTAEDPFQCLAACI+LS AL SSSPH+
Sbjct: 641  EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 700

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 701  VISHLPIHQD 710


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score =  658 bits (1697), Expect = 0.0
 Identities = 311/430 (72%), Positives = 368/430 (85%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNL--RKNASGMPEDLLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+QIG AIEQE++IHNFLEKTKN   +K    + E + KEKE+ R RV SL++RKRL 
Sbjct: 154  QAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTMHEVQETMDKEKEVLRKRVNSLIRRKRLM 213

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            E   LV  ++ K WS+ TQAKLGSRLIELL ETAYVQ P +QS D PPDVRPAFRH FK 
Sbjct: 214  EVQNLVKQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKT 273

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
            LT   GQ++VK+YGVIECDPL+L G+D +A++M+IPY PML+PPK W+GYDKGG+LFLPS
Sbjct: 274  LTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPS 333

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            +VMRTHGS++QQ A+R  P +QMQKVFEAL+TLG TKWR+NR++L VVE +W SGGNIAG
Sbjct: 334  YVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAG 393

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LV+ ED+P+PEKP ++D  EI  WKWSVRKAKKIN+ERH+ RCD ELKLSVA+K++DEEG
Sbjct: 394  LVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEG 453

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF EGRPLG+SGLRWLKIHLAN+Y+GGV
Sbjct: 454  FYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGV 513

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KLS++ R+AFVEN+L+EIFDSA NP+ G RWWL AEDPFQCLAACI+LS ALNS+SPHT
Sbjct: 514  EKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHT 573

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 574  VISHLPIHQD 583


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  657 bits (1694), Expect = 0.0
 Identities = 311/430 (72%), Positives = 368/430 (85%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNL-RKNASGMPED-LLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+ IG AIEQE++IH+FLEK+K+L RK  S   ED L KEKEI R RV  L++RKRL 
Sbjct: 245  QAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADEDGLSKEKEILRKRVNGLIRRKRLV 304

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            E  +L+  ED+K W +DTQAKLGSRLIELL ETA+VQ P  Q AD PPDVRPAFRH+ K 
Sbjct: 305  EVQKLLKKEDMKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKA 364

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
                 GQ++VK YGVIECDPLVL G+D++A++M+IPYVPML+PPK W+GYDKGG+LFLPS
Sbjct: 365  AAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPS 424

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            +VMRTHGS+KQ + MR    +QMQKVFEAL+ LG TKWRIN+KVL VVES+WA GGNIAG
Sbjct: 425  YVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAG 484

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LV+ EDVP+PEKP +EDP EI  W+WS RKAKK+N+ERH+ RCD ELKLSVA++M+DE+G
Sbjct: 485  LVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDG 544

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG+SGLRWLKIHLAN+Y+GGV
Sbjct: 545  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGV 604

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KLSY+ R++FV+N++ +IFDSA+NP+ GNRWWLTAEDP QCLAACI+LS ALNS SPHT
Sbjct: 605  EKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHT 664

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 665  VISHLPIHQD 674


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  654 bits (1686), Expect = 0.0
 Identities = 307/430 (71%), Positives = 371/430 (86%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNA--SGMPEDLLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+ IG AIEQEI+IH+FLEKTKN ++    +   E L KEKE+ R RV SL+K KR+ 
Sbjct: 284  QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            EA +L+ +E+ K W +DTQAKLGSRL+ELLIETAYVQHP + +  +PPDVRPAFRH+FK 
Sbjct: 344  EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
            +    GQ+  KRYGV+ECDPLVL+G+DRSA++M+IPYVPML+PPK W+GY+KGGYLFLPS
Sbjct: 404  ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            +VMRTHGS+KQQEA++      M+KVFEAL+TLG TKWR+N++VL V+ES+W SGGNIAG
Sbjct: 464  YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LV+  DV +PEKPL+ED  E+  WKWSVRKAKKIN+ERH+ RCD ELKLSVA++M+DEEG
Sbjct: 524  LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLG+SGLRWLKIHLAN+++GGV
Sbjct: 584  FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KLS++ R+AFVEN+L EIFDSA NPI G+RWWLTAEDPFQCLAACI+L+ AL SSSPH+
Sbjct: 644  EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHS 703

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 704  VISHLPIHQD 713


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  651 bits (1679), Expect = 0.0
 Identities = 302/430 (70%), Positives = 369/430 (85%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMP--EDLLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+QIG A+E E++IHNFLEKTK L+K+ +G    ED+ KE  I R RVKSL+KR R+ 
Sbjct: 249  QAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVV 308

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            E  +L+ SE+ +SW +DTQAKLG RL+ELL ETAYVQ P  QSAD PPD+RPAFRH FKI
Sbjct: 309  EVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKI 368

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
             T + G+ +VK+YGVIECDPLV+ G+DR+ + M+IPYVPML+PPK WRGYDKGGYLFLPS
Sbjct: 369  ATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 428

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            ++MRTHGS++QQ+A+R  P +QMQ+V+EAL+TLG TKWR+N+++L VVES+WA GGNIAG
Sbjct: 429  YLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAG 488

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LV+ +DVP+PE   ++D  E+  WKW VRK+KKIN+E H+ RCD ELKLSVA+K++DEEG
Sbjct: 489  LVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEG 548

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SGLRWLKIHLA++YAGGV
Sbjct: 549  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGV 608

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KL Y+AR+AFVEN++ +I DSA+NP+ GNRWWL AEDPFQCLAACI+LS AL SSSPHT
Sbjct: 609  EKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHT 668

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 669  VISHLPIHQD 678


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score =  649 bits (1673), Expect = 0.0
 Identities = 303/428 (70%), Positives = 367/428 (85%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAA+ IG AIEQE++IHNFL++T   RKN +G  ++ LKEK++ R RV SL++RKR+ +A
Sbjct: 268  QAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDA 324

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
             ++V SE IK W + TQAKLGSRL+ELLIETAYVQ P +QS D+ P+ RPAFRHKFK +T
Sbjct: 325  LKVVKSEGIKPWGRATQAKLGSRLLELLIETAYVQPPLTQSGDSIPEFRPAFRHKFKTVT 384

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
               G ++V+RYGVIECD L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPS++
Sbjct: 385  KYPGSKLVRRYGVIECDSLLLAGLDKSAKHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYI 444

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGSKKQQ+A+R    +   +VFEAL+TLG TKWR+NRK+L VVE LWA GGNIAGLV
Sbjct: 445  MRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLV 504

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            N EDVP+PEKP +EDP E+ +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFY
Sbjct: 505  NREDVPIPEKPSSEDPEELQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFY 564

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN+YAGGV+K
Sbjct: 565  YPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEK 624

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LS++AR+AFVE +L ++ DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ I
Sbjct: 625  LSHDARLAFVETHLDDVMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVI 684

Query: 26   SHLPIHQD 3
            SHLPIHQD
Sbjct: 685  SHLPIHQD 692


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score =  647 bits (1668), Expect = 0.0
 Identities = 304/428 (71%), Positives = 365/428 (85%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAA+ IG AIEQE++IHNFL++T   RKN +G  E+ LK+K++ R RV SL++RKR+ +A
Sbjct: 270  QAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSEEELKDKQLLRKRVNSLIRRKRIIDA 326

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
             ++V SE IK W + TQAKLGSRL+ELLIETAYVQ P +Q+ D  P+ RPAFRHKFK +T
Sbjct: 327  LKVVKSEGIKPWGRATQAKLGSRLLELLIETAYVQPPLTQAGDTIPEFRPAFRHKFKTVT 386

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
               G ++V+RYGVIECD L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPS++
Sbjct: 387  KYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYI 446

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGSKKQQ+A+R    +   +VFEAL+TLG TKWR+NRK+L VVE LWA GGNIAGLV
Sbjct: 447  MRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLV 506

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            N EDVP+PEKP +EDP EI +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFY
Sbjct: 507  NREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFY 566

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN+YAGGV+K
Sbjct: 567  YPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVEK 626

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LS++ R+AFVEN+L  I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ I
Sbjct: 627  LSHDGRLAFVENHLDNIMDSAENPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSVI 686

Query: 26   SHLPIHQD 3
            SHLPIHQD
Sbjct: 687  SHLPIHQD 694


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  646 bits (1667), Expect = 0.0
 Identities = 308/430 (71%), Positives = 363/430 (84%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKN--LRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+QIG AIEQE++IHNFLEKTKN   +K    + E + KEKE+ R RV SL++RKRL 
Sbjct: 254  QAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLM 313

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            E   LV  ++ K W++D QAKLGSRLIELL ETAYVQ P  QS   PPDVRPAFRH FK 
Sbjct: 314  EVQNLVIQDETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKS 373

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
            +T   GQ+ VK+YGVIECDPL+L G+D +A++M+IPY PML+PPK WRGYDKGG+LFLPS
Sbjct: 374  VTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPS 433

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            ++MRTHGS++QQ+A+R  P +QMQKVFEAL+TLG TKWR+N KVL VVE +WASGGN AG
Sbjct: 434  YIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAG 493

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LVN  D+P+PEK  ++D  EI  WKWSVRKAKKIN+ERH+ RCD ELKLSVA+K++DEEG
Sbjct: 494  LVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEG 553

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEFAEGRPLG+SGL WLKIHLAN+Y+GGV
Sbjct: 554  FYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGV 613

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KLS++ R+AFVEN+L+EIFDSA NP+ G RWWLTAEDPFQCLAACI+LS AL S+SPHT
Sbjct: 614  EKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHT 673

Query: 32   FISHLPIHQD 3
             ISHLPIHQD
Sbjct: 674  VISHLPIHQD 683


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
            gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 990

 Score =  644 bits (1660), Expect = 0.0
 Identities = 302/428 (70%), Positives = 365/428 (85%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAA+ IG AIEQE++IHNFL++T   RKN +G  ++ LKEK++ R RV SL++RKR+ +A
Sbjct: 267  QAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDA 323

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
             ++V +E  K W + TQAKLGSRL+ELLIE AYVQ P +QS D+ P+ RPAFRHKFK +T
Sbjct: 324  LKVVKTEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHKFKTVT 383

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
               G +MV+RYGVIECD L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPS++
Sbjct: 384  KYPGSKMVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYI 443

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGSKKQQ+A+R    +   +VFEAL+TLG TKWR+NR +L VVE LWA GGNIAGLV
Sbjct: 444  MRTHGSKKQQDALRDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLV 503

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            N EDVP+PEKP +EDP EI +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFY
Sbjct: 504  NREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFY 563

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN++AGGV+K
Sbjct: 564  YPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLFAGGVEK 623

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ I
Sbjct: 624  LSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALRSPSPYSVI 683

Query: 26   SHLPIHQD 3
            SHLPIHQD
Sbjct: 684  SHLPIHQD 691


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  642 bits (1657), Expect = 0.0
 Identities = 298/430 (69%), Positives = 368/430 (85%), Gaps = 2/430 (0%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMP--EDLLKEKEIQRNRVKSLVKRKRLF 1113
            QAA+QIG A+E E++IHNFLEKTK L+K+ +G    ED+ +E  I R RVKSL+KR R+ 
Sbjct: 250  QAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVV 309

Query: 1112 EAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKI 933
            E  +L+ SE+ +SW +DTQAKLG RL+ELL ETAYVQ P  QSAD PPD+RPAFRH F+I
Sbjct: 310  EVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRI 369

Query: 932  LTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPS 753
             T + G+ +VK+YGVIECDPLV+ G+DR+ + M+IPYVPML+PPK WRGYDKGGYLFLPS
Sbjct: 370  ATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 429

Query: 752  FVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAG 573
            ++MRTHGS++QQ+A+R  P +QMQ+V+EAL+TLG TKWR+N+++L VVES+WA GGNIAG
Sbjct: 430  YLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAG 489

Query: 572  LVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEG 393
            LV+ +DVP+PE   ++D  E+  WKW VRK+KKIN+E H+ RCD ELKLSVA+K++DEEG
Sbjct: 490  LVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEG 548

Query: 392  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGV 213
            FYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SGLRWLKIHLA++YAGG+
Sbjct: 549  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGI 608

Query: 212  DKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHT 33
            +KL Y+AR+AFVEN++ +I DSA+NP+ GNRWWL AEDPFQCLAACI+LS AL SSSPHT
Sbjct: 609  EKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHT 668

Query: 32   FISHLPIHQD 3
              SHLPIHQD
Sbjct: 669  VFSHLPIHQD 678


>ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3
            [Arabidopsis thaliana]
          Length = 895

 Score =  640 bits (1652), Expect = 0.0
 Identities = 299/428 (69%), Positives = 364/428 (85%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAA+ IG AIEQE++IHNFL++T   RKN +G  ++ LKEK++ R RV SL++RKR+ +A
Sbjct: 270  QAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDA 326

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
             ++V SE  K W + TQAKLGSRL+ELLIE AYVQ P +QS D+ P+ RPAFRH+FK +T
Sbjct: 327  LKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVT 386

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
               G ++V+RYGVIECD L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPS++
Sbjct: 387  KYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYI 446

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGSKKQQ+A++    +   +VFEAL+TLG TKWR+NR +L VVE LWA GGNIAGLV
Sbjct: 447  MRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLV 506

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            N EDVP+PEKP +EDP E+ +WKWS RKA KINRERH+LRCD+ELKLSVA+KM+DEEGFY
Sbjct: 507  NREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFY 566

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN+YAGGV+K
Sbjct: 567  YPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEK 626

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ I
Sbjct: 627  LSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVI 686

Query: 26   SHLPIHQD 3
            SHLPIHQD
Sbjct: 687  SHLPIHQD 694


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  640 bits (1652), Expect = 0.0
 Identities = 299/428 (69%), Positives = 364/428 (85%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAA+ IG AIEQE++IHNFL++T   RKN +G  ++ LKEK++ R RV SL++RKR+ +A
Sbjct: 270  QAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDA 326

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
             ++V SE  K W + TQAKLGSRL+ELLIE AYVQ P +QS D+ P+ RPAFRH+FK +T
Sbjct: 327  LKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVT 386

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
               G ++V+RYGVIECD L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPS++
Sbjct: 387  KYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYI 446

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGSKKQQ+A++    +   +VFEAL+TLG TKWR+NR +L VVE LWA GGNIAGLV
Sbjct: 447  MRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLV 506

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            N EDVP+PEKP +EDP E+ +WKWS RKA KINRERH+LRCD+ELKLSVA+KM+DEEGFY
Sbjct: 507  NREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFY 566

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN+YAGGV+K
Sbjct: 567  YPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEK 626

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ I
Sbjct: 627  LSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVI 686

Query: 26   SHLPIHQD 3
            SHLPIHQD
Sbjct: 687  SHLPIHQD 694


>dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana]
          Length = 786

 Score =  640 bits (1652), Expect = 0.0
 Identities = 299/428 (69%), Positives = 364/428 (85%)
 Frame = -1

Query: 1286 QAALQIGAAIEQEIKIHNFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEA 1107
            QAA+ IG AIEQE++IHNFL++T   RKN +G  ++ LKEK++ R RV SL++RKR+ +A
Sbjct: 270  QAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDA 326

Query: 1106 ARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILT 927
             ++V SE  K W + TQAKLGSRL+ELLIE AYVQ P +QS D+ P+ RPAFRH+FK +T
Sbjct: 327  LKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVT 386

Query: 926  NELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSFV 747
               G ++V+RYGVIECD L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPS++
Sbjct: 387  KYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYI 446

Query: 746  MRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLV 567
            MRTHGSKKQQ+A++    +   +VFEAL+TLG TKWR+NR +L VVE LWA GGNIAGLV
Sbjct: 447  MRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLV 506

Query: 566  NCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFY 387
            N EDVP+PEKP +EDP E+ +WKWS RKA KINRERH+LRCD+ELKLSVA+KM+DEEGFY
Sbjct: 507  NREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFY 566

Query: 386  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDK 207
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN+YAGGV+K
Sbjct: 567  YPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEK 626

Query: 206  LSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFI 27
            LS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ I
Sbjct: 627  LSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVI 686

Query: 26   SHLPIHQD 3
            SHLPIHQD
Sbjct: 687  SHLPIHQD 694