BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00018681
         (3439 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19367.3| unnamed protein product [Vitis vinifera]              817   0.0  
ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 hom...   801   0.0  
gb|EOY15661.1| Pre-mRNA-processing protein 40A isoform 1 [Theobr...   790   0.0  
gb|EOY15665.1| Pre-mRNA-processing protein 40A isoform 5 [Theobr...   783   0.0  
gb|EOY15663.1| Pre-mRNA-processing protein 40A isoform 3 [Theobr...   783   0.0  
gb|EXC51391.1| Pre-mRNA-processing factor 40-A-like protein [Mor...   754   0.0  
ref|XP_002320019.2| FF domain-containing family protein [Populus...   750   0.0  
gb|EMJ28229.1| hypothetical protein PRUPE_ppa000697mg [Prunus pe...   749   0.0  
ref|XP_004141297.1| PREDICTED: pre-mRNA-processing protein 40A-l...   748   0.0  
ref|XP_006343435.1| PREDICTED: pre-mRNA-processing protein 40A-l...   732   0.0  
ref|XP_006343434.1| PREDICTED: pre-mRNA-processing protein 40A-l...   732   0.0  
ref|XP_006343433.1| PREDICTED: pre-mRNA-processing protein 40A-l...   732   0.0  
gb|EOY15664.1| Pre-mRNA-processing protein 40A isoform 4 [Theobr...   730   0.0  
ref|XP_006827042.1| hypothetical protein AMTR_s00010p00227470 [A...   719   0.0  
ref|XP_004242948.1| PREDICTED: pre-mRNA-processing protein 40A-l...   708   0.0  
ref|XP_002510055.1| protein binding protein, putative [Ricinus c...   700   0.0  
ref|XP_004292768.1| PREDICTED: pre-mRNA-processing protein 40A-l...   692   0.0  
ref|XP_004956604.1| PREDICTED: pre-mRNA-processing protein 40A-l...   689   0.0  
ref|NP_175113.2| pre-mRNA-processing protein 40A [Arabidopsis th...   687   0.0  
dbj|BAH19565.1| AT1G44910 [Arabidopsis thaliana]                      687   0.0  

>emb|CBI19367.3| unnamed protein product [Vitis vinifera]
          Length = 1030

 Score =  817 bits (2111), Expect = 0.0
 Identities = 451/867 (52%), Positives = 553/867 (63%), Gaps = 30/867 (3%)
 Frame = +3

Query: 111  IATMGTPQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNM-------PSGPNQPI 269
            + +MG PQNFGPP+  QFRPAVPGQQG P++  +S QF P GQN+       PSG NQP 
Sbjct: 18   VGSMG-PQNFGPPLSMQFRPAVPGQQGHPFIPAASQQFRPIGQNISSPNVGGPSGQNQPP 76

Query: 270  RPNQPMQFSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS 449
            + +Q MQ                           Y Q NRP+T  + Q   +APP N+H 
Sbjct: 77   QFSQAMQ-----QLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSSPQPNQTAPPLNSHM 131

Query: 450  -GVGGMGAPFSSSYTFQQGSH---------------LNTPQAPNXXXXXXXXXXXXXXXX 581
             G+ G G PFSSSYTF   S                ++   AP                 
Sbjct: 132  PGLAGPGMPFSSSYTFAPASFGQPQSTINASAQFQPISQMHAPVGGQPWLSSGSQSGALV 191

Query: 582  XXXXXXVNQPTVSAAPVPVINPADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSE 761
                    QP+V+A  +P  N  +    SSSDWQEHT+ DGRRYYYNKKT+ SSWEKP E
Sbjct: 192  TPVHQAGQQPSVTA-DIPAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKTRLSSWEKPLE 250

Query: 762  LMTPMERADASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVV 941
            LMTP+ERADASTVWKEFTTPEG+KYYYNKVTK+SKW+IPEELKLAREQAEK+   V    
Sbjct: 251  LMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKS---VSQET 307

Query: 942  QIDTGINTQPAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIV---NQSLAV 1112
            Q + G  +   A  + +  E P++A                     + P+V   N    V
Sbjct: 308  QSEMGTTSNEPAVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAVVNPPPVV 367

Query: 1113 NGASSETSVGHSVSQTSKDITNSPAVTTPLSASTSGDAGLPAAS-SASSTIVNASDRLPS 1289
               +S   +  S   TS  +   P++ TPL A+ SG  G+ AA  + ++T + + + L +
Sbjct: 368  VSGTSAIPIAQSAVTTSA-VGVQPSMGTPLPAAVSGSTGVAAAFINPNATSMTSFENLSA 426

Query: 1290 QEISNTTNGALVQDAAESREGVVVAGKVD---LVEKPTDDEPLVFATKQEAKSAFKLLLE 1460
                + TNGA +QD  E+++GV VAGK++   L EK  DDEPLV++TK EAK+AFK LLE
Sbjct: 427  ----DATNGASMQDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYSTKLEAKNAFKALLE 482

Query: 1461 SANVQSDWNWDQAMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKE 1640
            SANV+SDW WDQAM+ I+NDKRYGALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+E
Sbjct: 483  SANVESDWTWDQAMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKARE 542

Query: 1641 EFTKMLEESEVLTSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXX 1820
            EFT MLEE + LTSS+KWSKA+ +F+DDERFKAVE+ +DR++LFEN+++           
Sbjct: 543  EFTTMLEECKELTSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFIMELQKKERTKAL 602

Query: 1821 XXXXXXXXXYWKFLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXX 2000
                     Y +FLESCDFI+ NS WRKVQDRLEDD+ CSRLEK++RLEIFQ+YIR    
Sbjct: 603  EEQKRNRMEYRQFLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLER 662

Query: 2001 XXXXXXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVA 2180
                         RRAERKNRDEFR ++E  VAAG LTAKT WR+YC KVK+SS YLAVA
Sbjct: 663  EEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLAVA 722

Query: 2181 RNTSGSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGS 2360
             NTSGSTPKDLFEDV +ELE QYH+DK+R+KDAMKL K+T+ S+WTF +FK +IL ++GS
Sbjct: 723  SNTSGSTPKDLFEDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDVGS 782

Query: 2361 PPISDINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFI 2540
            P ISD+NLKLVF                 RQRL DDF DLLRS KEITASS WED K   
Sbjct: 783  PNISDVNLKLVFEELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKPLF 842

Query: 2541 EDSEEYREIGNETLARETFEDYVVHLQ 2621
            E+S+EYR IG E+  RE FE+Y+ HLQ
Sbjct: 843  EESQEYRSIGEESFGREIFEEYIAHLQ 869



 Score = 88.2 bits (217), Expect = 2e-14
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+  SD+++KEE KKSRRHGSDRKKSRKH Y+P+SD ESRHKRHKR++ DGSR
Sbjct: 958  DDASSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSR 1010


>ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis
            vinifera]
          Length = 1020

 Score =  801 bits (2069), Expect = 0.0
 Identities = 443/855 (51%), Positives = 537/855 (62%), Gaps = 18/855 (2%)
 Frame = +3

Query: 111  IATMGTPQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNM-------PSGPNQPI 269
            + +MG PQNFGPP+  QFRPAVPGQQG P++  +S QF P GQN+       PSG NQP 
Sbjct: 32   VGSMG-PQNFGPPLSMQFRPAVPGQQGHPFIPAASQQFRPIGQNISSPNVGGPSGQNQPP 90

Query: 270  RPNQPMQFSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS 449
            + +Q MQ                           Y Q NRP+T  + Q   +APP N+H 
Sbjct: 91   QFSQAMQ-----QLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSSPQPNQTAPPLNSHM 145

Query: 450  ----GVGGMGAPFSSSYTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTV 617
                     G P S+     Q   ++   AP                         QP+V
Sbjct: 146  PGLFAPASFGQPQSTINASAQFQPISQMHAPVGGQPWLSSGSQSGALVTPVHQAGQQPSV 205

Query: 618  SA-APVPVINPADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADAS 794
            +A  PV   N  +    SSSDWQEHT+ DGRRYYYNKKT+ SSWEKP ELMTP+ERADAS
Sbjct: 206  TADIPVSAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKTRLSSWEKPLELMTPIERADAS 265

Query: 795  TVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPA 974
            TVWKEFTTPEG+KYYYNKVTK+SKW+IPEELKLAREQAEK   +V    Q + G  +   
Sbjct: 266  TVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEK---SVSQETQSEMGTTSNEP 322

Query: 975  AAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPP---IVNQSLAVNGASSETSVGH 1145
            A  + +  E P++A                     + P   +VN    V   +S   +  
Sbjct: 323  AVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAVVNPPPVVVSGTSAIPIAQ 382

Query: 1146 SVSQTSKDITNSPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALV 1325
            S   TS  +   P++ TPL A+ SG  G+ A  SA                 + TNGA +
Sbjct: 383  SAVTTSA-VGVQPSMGTPLPAAVSGSTGVAANLSA-----------------DATNGASM 424

Query: 1326 QDAAESREGVVVAGKVD---LVEKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQ 1496
            QD  E+++GV VAGK++   L EK  DDEPLV++TK EAK+AFK LLESANV+SDW WDQ
Sbjct: 425  QDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYSTKLEAKNAFKALLESANVESDWTWDQ 484

Query: 1497 AMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVL 1676
            AM+ I+NDKRYGALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+EEFT MLEE + L
Sbjct: 485  AMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKAREEFTTMLEECKEL 544

Query: 1677 TSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWK 1856
            TSS+KWSKA+ +F+DDERFKAVE+ +DR++LFEN+++                    Y +
Sbjct: 545  TSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFIMELQKKERTKALEEQKRNRMEYRQ 604

Query: 1857 FLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXX 2036
            FLESCDFI+ NS WRKVQDRLEDD+ CSRLEK++RLEIFQ+YIR                
Sbjct: 605  FLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEREEEEQRKIQKEQ 664

Query: 2037 XRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLF 2216
             RRAERKNRDEFR ++E  VAAG LTAKT WR+YC KVK+SS YLAVA NTSGSTPKDLF
Sbjct: 665  LRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLAVASNTSGSTPKDLF 724

Query: 2217 EDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVF 2396
            EDV +ELE QYH+DK+R+KDAMKL K+T+ S+WTF +FK +IL ++GSP ISD+NLKLVF
Sbjct: 725  EDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDVGSPNISDVNLKLVF 784

Query: 2397 XXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNE 2576
                             RQRL DDF DLLRS KEITASS WED K   E+S+EYR IG E
Sbjct: 785  EELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKPLFEESQEYRSIGEE 844

Query: 2577 TLARETFEDYVVHLQ 2621
            +  RE FE+Y+ HLQ
Sbjct: 845  SFGREIFEEYIAHLQ 859



 Score = 88.2 bits (217), Expect = 2e-14
 Identities = 39/53 (73%), Positives = 47/53 (88%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+  SD+++KEE KKSRRHGSDRKKSRKH Y+P+SD ESRHKRHKR++ DGSR
Sbjct: 948  DDASSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSR 1000


>gb|EOY15661.1| Pre-mRNA-processing protein 40A isoform 1 [Theobroma cacao]
            gi|508723765|gb|EOY15662.1| Pre-mRNA-processing protein
            40A isoform 1 [Theobroma cacao]
          Length = 1032

 Score =  790 bits (2041), Expect = 0.0
 Identities = 435/855 (50%), Positives = 539/855 (63%), Gaps = 24/855 (2%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQ++G P+ SQFRP VP QQGQ ++  +S QF P GQ   S    P   NQ MQFS    
Sbjct: 23   PQSYGSPLSSQFRPVVPMQQGQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPMQ 82

Query: 309  XXXXXXXXXXXXXXXXXXXXX-YGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMGAPFSS 482
                                  +GQ NRP+T G+ Q+  +APP N+H  G+G  G P SS
Sbjct: 83   QFPPRPNQPGLSAPSAQPMHVPFGQTNRPLTSGSPQSHQTAPPLNSHMPGLGAPGMPPSS 142

Query: 483  SYTFQQGS----HLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPV------ 632
            SY++   S      N   +                         NQ    A P+      
Sbjct: 143  SYSYVPSSFGQPQNNVSASSQFQPTSQVHASVAPVAGQPWLSSGNQSVSLAIPIQQTGQQ 202

Query: 633  -PVINPADS-------NQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERAD 788
             P+I+ AD+          S+SDWQEHT+ DGRRYYYNKKT+QSSWEKP ELMTP+ERAD
Sbjct: 203  PPLISSADTAANAPIHTPPSASDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERAD 262

Query: 789  ASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQ 968
            ASTVWKEFTTPEG+KYYYNKVTK+SKW+IPEELKLAREQA+  A         DTG+ +Q
Sbjct: 263  ASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS---QGAPSDTGVASQ 319

Query: 969  PAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHS 1148
               AG+ +S E+PA+A                     +  + N S  +   S+   V  S
Sbjct: 320  APVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTP---VAAVANPSPTLVSGSTVVPVSQS 376

Query: 1149 VSQTSKDITNSPAVTTPLSASTSGDAGLPAAS-SASSTIVNASDRLPSQEISNTTNGALV 1325
             +  + ++ +     TPL A +SG +  P  S +A++T++ + +   SQ+  + TNGA  
Sbjct: 377  AATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASA 436

Query: 1326 QDAAESREGVVVAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQ 1496
            QD  E+++G+  AGKV++    EK  DDEPLV+A KQEAK+AFK LLESANVQSDW W+Q
Sbjct: 437  QDIEEAKKGMATAGKVNVTPVEEKVPDDEPLVYANKQEAKNAFKSLLESANVQSDWTWEQ 496

Query: 1497 AMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVL 1676
             MR I+NDKRYGALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+EEFTKMLEES+ L
Sbjct: 497  TMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKEL 556

Query: 1677 TSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWK 1856
            TSSM+WSKA +LFE+DERFKAVE+ +DR++LFENY+V                    Y K
Sbjct: 557  TSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVELERKERENAAEEKRRNIAEYRK 616

Query: 1857 FLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXX 2036
            FLESCDFI+ANS WRKVQDRLEDD+ CSRLEK++RL +FQDYI                 
Sbjct: 617  FLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLVMFQDYIHDLEKEEEEKKKMQKEQ 676

Query: 2037 XRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLF 2216
             RRAERKNRD FR +++  V  G LTAKT WR+YC KVK+   YLAVA NTSGSTPKDLF
Sbjct: 677  LRRAERKNRDAFRKLMDEHVVDGTLTAKTYWRDYCLKVKDLPPYLAVASNTSGSTPKDLF 736

Query: 2217 EDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVF 2396
            EDVV+ELE QY  DK+ +KDAMK  KI+M S+WT E+FK +I +++GS PISDINLKLV+
Sbjct: 737  EDVVEELEKQYQQDKTHIKDAMKSGKISMVSTWTVEDFKAAISEDVGSLPISDINLKLVY 796

Query: 2397 XXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNE 2576
                             RQRL DDFT LL ++KEITASS WEDS+   E+S+EYR I  E
Sbjct: 797  EELLKSAKEKEEKEAKKRQRLADDFTKLLHTYKEITASSDWEDSRPLFEESQEYRSIAEE 856

Query: 2577 TLARETFEDYVVHLQ 2621
            +L RE FE+Y+ +LQ
Sbjct: 857  SLRREIFEEYIAYLQ 871



 Score = 92.4 bits (228), Expect = 1e-15
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+  SD+DD+EE KKSRRHGSDRKKSRKH +SP+SD ESRHK+HKRD+RDGSR
Sbjct: 960  DDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPESDNESRHKKHKRDHRDGSR 1012


>gb|EOY15665.1| Pre-mRNA-processing protein 40A isoform 5 [Theobroma cacao]
          Length = 904

 Score =  783 bits (2022), Expect = 0.0
 Identities = 435/864 (50%), Positives = 539/864 (62%), Gaps = 33/864 (3%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQ++G P+ SQFRP VP QQGQ ++  +S QF P GQ   S    P   NQ MQFS    
Sbjct: 23   PQSYGSPLSSQFRPVVPMQQGQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPMQ 82

Query: 309  XXXXXXXXXXXXXXXXXXXXX-YGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMGAPFSS 482
                                  +GQ NRP+T G+ Q+  +APP N+H  G+G  G P SS
Sbjct: 83   QFPPRPNQPGLSAPSAQPMHVPFGQTNRPLTSGSPQSHQTAPPLNSHMPGLGAPGMPPSS 142

Query: 483  SYTFQQGS----HLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPV------ 632
            SY++   S      N   +                         NQ    A P+      
Sbjct: 143  SYSYVPSSFGQPQNNVSASSQFQPTSQVHASVAPVAGQPWLSSGNQSVSLAIPIQQTGQQ 202

Query: 633  -PVINPADS-------NQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERAD 788
             P+I+ AD+          S+SDWQEHT+ DGRRYYYNKKT+QSSWEKP ELMTP+ERAD
Sbjct: 203  PPLISSADTAANAPIHTPPSASDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERAD 262

Query: 789  ASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQ 968
            ASTVWKEFTTPEG+KYYYNKVTK+SKW+IPEELKLAREQA+  A         DTG+ +Q
Sbjct: 263  ASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS---QGAPSDTGVASQ 319

Query: 969  PAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHS 1148
               AG+ +S E+PA+A                     +  + N S  +   S+   V  S
Sbjct: 320  APVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTP---VAAVANPSPTLVSGSTVVPVSQS 376

Query: 1149 VSQTSKDITNSPAVTTPLSASTSGDAGLPAAS-SASSTIVNASDRLPSQEISNTTNGALV 1325
             +  + ++ +     TPL A +SG +  P  S +A++T++ + +   SQ+  + TNGA  
Sbjct: 377  AATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASA 436

Query: 1326 QDAAESREGVVVAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQ 1496
            QD  E+++G+  AGKV++    EK  DDEPLV+A KQEAK+AFK LLESANVQSDW W+Q
Sbjct: 437  QDIEEAKKGMATAGKVNVTPVEEKVPDDEPLVYANKQEAKNAFKSLLESANVQSDWTWEQ 496

Query: 1497 AMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVL 1676
             MR I+NDKRYGALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+EEFTKMLEES+ L
Sbjct: 497  TMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKEL 556

Query: 1677 TSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWK 1856
            TSSM+WSKA +LFE+DERFKAVE+ +DR++LFENY+V                    Y K
Sbjct: 557  TSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVELERKERENAAEEKRRNIAEYRK 616

Query: 1857 FLESCDF---------IEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXX 2009
            FLESCDF         I+ANS WRKVQDRLEDD+ CSRLEK++RL +FQDYI        
Sbjct: 617  FLESCDFIKVQHFQKRIQANSQWRKVQDRLEDDERCSRLEKIDRLVMFQDYIHDLEKEEE 676

Query: 2010 XXXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNT 2189
                      RRAERKNRD FR +++  V  G LTAKT WR+YC KVK+   YLAVA NT
Sbjct: 677  EKKKMQKEQLRRAERKNRDAFRKLMDEHVVDGTLTAKTYWRDYCLKVKDLPPYLAVASNT 736

Query: 2190 SGSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPI 2369
            SGSTPKDLFEDVV+ELE QY  DK+ +KDAMK  KI+M S+WT E+FK +I +++GS PI
Sbjct: 737  SGSTPKDLFEDVVEELEKQYQQDKTHIKDAMKSGKISMVSTWTVEDFKAAISEDVGSLPI 796

Query: 2370 SDINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDS 2549
            SDINLKLV+                 RQRL DDFT LL ++KEITASS WEDS+   E+S
Sbjct: 797  SDINLKLVYEELLKSAKEKEEKEAKKRQRLADDFTKLLHTYKEITASSDWEDSRPLFEES 856

Query: 2550 EEYREIGNETLARETFEDYVVHLQ 2621
            +EYR I  E+L RE FE+Y+ +LQ
Sbjct: 857  QEYRSIAEESLRREIFEEYIAYLQ 880


>gb|EOY15663.1| Pre-mRNA-processing protein 40A isoform 3 [Theobroma cacao]
          Length = 1041

 Score =  783 bits (2022), Expect = 0.0
 Identities = 435/864 (50%), Positives = 539/864 (62%), Gaps = 33/864 (3%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQ++G P+ SQFRP VP QQGQ ++  +S QF P GQ   S    P   NQ MQFS    
Sbjct: 23   PQSYGSPLSSQFRPVVPMQQGQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPMQ 82

Query: 309  XXXXXXXXXXXXXXXXXXXXX-YGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMGAPFSS 482
                                  +GQ NRP+T G+ Q+  +APP N+H  G+G  G P SS
Sbjct: 83   QFPPRPNQPGLSAPSAQPMHVPFGQTNRPLTSGSPQSHQTAPPLNSHMPGLGAPGMPPSS 142

Query: 483  SYTFQQGS----HLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPV------ 632
            SY++   S      N   +                         NQ    A P+      
Sbjct: 143  SYSYVPSSFGQPQNNVSASSQFQPTSQVHASVAPVAGQPWLSSGNQSVSLAIPIQQTGQQ 202

Query: 633  -PVINPADS-------NQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERAD 788
             P+I+ AD+          S+SDWQEHT+ DGRRYYYNKKT+QSSWEKP ELMTP+ERAD
Sbjct: 203  PPLISSADTAANAPIHTPPSASDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERAD 262

Query: 789  ASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQ 968
            ASTVWKEFTTPEG+KYYYNKVTK+SKW+IPEELKLAREQA+  A         DTG+ +Q
Sbjct: 263  ASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS---QGAPSDTGVASQ 319

Query: 969  PAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHS 1148
               AG+ +S E+PA+A                     +  + N S  +   S+   V  S
Sbjct: 320  APVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTP---VAAVANPSPTLVSGSTVVPVSQS 376

Query: 1149 VSQTSKDITNSPAVTTPLSASTSGDAGLPAAS-SASSTIVNASDRLPSQEISNTTNGALV 1325
             +  + ++ +     TPL A +SG +  P  S +A++T++ + +   SQ+  + TNGA  
Sbjct: 377  AATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASA 436

Query: 1326 QDAAESREGVVVAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQ 1496
            QD  E+++G+  AGKV++    EK  DDEPLV+A KQEAK+AFK LLESANVQSDW W+Q
Sbjct: 437  QDIEEAKKGMATAGKVNVTPVEEKVPDDEPLVYANKQEAKNAFKSLLESANVQSDWTWEQ 496

Query: 1497 AMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVL 1676
             MR I+NDKRYGALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+EEFTKMLEES+ L
Sbjct: 497  TMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKEL 556

Query: 1677 TSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWK 1856
            TSSM+WSKA +LFE+DERFKAVE+ +DR++LFENY+V                    Y K
Sbjct: 557  TSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVELERKERENAAEEKRRNIAEYRK 616

Query: 1857 FLESCDF---------IEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXX 2009
            FLESCDF         I+ANS WRKVQDRLEDD+ CSRLEK++RL +FQDYI        
Sbjct: 617  FLESCDFIKVQHFQKRIQANSQWRKVQDRLEDDERCSRLEKIDRLVMFQDYIHDLEKEEE 676

Query: 2010 XXXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNT 2189
                      RRAERKNRD FR +++  V  G LTAKT WR+YC KVK+   YLAVA NT
Sbjct: 677  EKKKMQKEQLRRAERKNRDAFRKLMDEHVVDGTLTAKTYWRDYCLKVKDLPPYLAVASNT 736

Query: 2190 SGSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPI 2369
            SGSTPKDLFEDVV+ELE QY  DK+ +KDAMK  KI+M S+WT E+FK +I +++GS PI
Sbjct: 737  SGSTPKDLFEDVVEELEKQYQQDKTHIKDAMKSGKISMVSTWTVEDFKAAISEDVGSLPI 796

Query: 2370 SDINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDS 2549
            SDINLKLV+                 RQRL DDFT LL ++KEITASS WEDS+   E+S
Sbjct: 797  SDINLKLVYEELLKSAKEKEEKEAKKRQRLADDFTKLLHTYKEITASSDWEDSRPLFEES 856

Query: 2550 EEYREIGNETLARETFEDYVVHLQ 2621
            +EYR I  E+L RE FE+Y+ +LQ
Sbjct: 857  QEYRSIAEESLRREIFEEYIAYLQ 880



 Score = 92.4 bits (228), Expect = 1e-15
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+  SD+DD+EE KKSRRHGSDRKKSRKH +SP+SD ESRHK+HKRD+RDGSR
Sbjct: 969  DDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPESDNESRHKKHKRDHRDGSR 1021


>gb|EXC51391.1| Pre-mRNA-processing factor 40-A-like protein [Morus notabilis]
          Length = 994

 Score =  754 bits (1946), Expect = 0.0
 Identities = 419/844 (49%), Positives = 528/844 (62%), Gaps = 28/844 (3%)
 Frame = +3

Query: 174  VPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRP--NQPMQFSXXXXXXXXXXXXXXXXX 347
            VP Q GQP++  SS QF P GQ +P  PN  + P  +QP+QFS                 
Sbjct: 2    VPNQHGQPFIP-SSQQFQPVGQGIPP-PNLGMHPAHSQPVQFSQQMQQYPPRPSQPGHPM 59

Query: 348  XXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHSGVGGMGAPFSSSYT------------ 491
                         RP+  G  Q+Q  A P+ N    GG   PFSSSY+            
Sbjct: 60   PSSQGLPMSYIQTRPIAPGPPQSQQHAAPFTNQMPPGG-AMPFSSSYSYAPSSFVQPQNN 118

Query: 492  ------FQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINPAD 653
                  FQQ S +  P AP                          P+ +++     N   
Sbjct: 119  ASSVSQFQQMSQMQAPTAPGPGQPWLSSGIHSAPPVAPGQQVGQPPSAASSADAATNVPS 178

Query: 654  SNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEGKK 833
            + Q SSSDWQEHT+ DGRRYYYNK+TKQS W+KP ELMTP+ERADASTVWKE+++P+G+K
Sbjct: 179  TTQQSSSDWQEHTSSDGRRYYYNKRTKQSVWDKPVELMTPIERADASTVWKEYSSPDGRK 238

Query: 834  YYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQ-PAAAGSSTSGELPA 1010
            YYYNKVTK+SKW+IPEELKLAREQA+K +      +Q +TG+ +  P A GSS   E+P+
Sbjct: 239  YYYNKVTKQSKWTIPEELKLAREQAQKESS---QGMQSETGLASHGPVAVGSS---EMPS 292

Query: 1011 SAXXXXXXXXXXXXXXXXXXXXXIP--PIVNQSLAVNGASSETSVGHSVSQTSKDITNSP 1184
            +                       P   + N S+ ++G+S+  + G   +  S      P
Sbjct: 293  AGTPVASGAPLVATGVASSPVAVTPVASLPNSSMTISGSSA--TPGSQSAVASAVAVQPP 350

Query: 1185 AVT-TPLSASTSGDAGL-PAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVV 1358
             VT TPL+ + SG  G+ PA  +A++T V   D   SQ+I+++ +GA + D  E+++G+ 
Sbjct: 351  MVTVTPLNPAISGSTGVSPALGNANTTPVRTYDNRVSQDIASSVDGASILDIEEAKKGMA 410

Query: 1359 VAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRY 1529
            VAGK+++    EKP DDEPLVFA KQEAK+AFK LLESANVQSDW W+QAMR I+NDKRY
Sbjct: 411  VAGKINVTPVEEKPVDDEPLVFANKQEAKNAFKSLLESANVQSDWTWEQAMREIINDKRY 470

Query: 1530 GALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAIT 1709
            GALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+EEFT MLEES+ LTSS +WSKA++
Sbjct: 471  GALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTIMLEESKELTSSTRWSKAVS 530

Query: 1710 LFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEAN 1889
            +FE+DERFKAVE+ +DR++LFE+Y+V                    Y KFLESCDFI+ N
Sbjct: 531  MFENDERFKAVERARDREDLFESYIVELERKEKEKAAEEHRRNAAEYRKFLESCDFIKVN 590

Query: 1890 SLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDE 2069
            S WRKVQ RLEDD+ C RLEKL+RL IFQDYIR                 RR ERKNRDE
Sbjct: 591  SQWRKVQVRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDE 650

Query: 2070 FRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQY 2249
            FR ++E  + A  LTAKT WR+YC KVK+   Y AVA NTSGSTPKDLFEDV +ELE QY
Sbjct: 651  FRKLMEEHIDAAALTAKTPWRDYCLKVKDLPQYEAVASNTSGSTPKDLFEDVTEELEKQY 710

Query: 2250 HDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXX 2429
            HDDK+RVKD +KL K++  SSWTF++FK +IL+++GSPPI +INLKLV+           
Sbjct: 711  HDDKARVKDTLKLGKVSFESSWTFDDFKAAILEDIGSPPILEINLKLVYEELLERAKEKE 770

Query: 2430 XXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYV 2609
                  RQRL DDFT LL S KEIT +S WED +Q  E+ +EYR IG E++ R+ FE+Y+
Sbjct: 771  EKETKKRQRLADDFTKLLHSKKEITTTSNWEDCRQLFEECQEYRAIGEESVTRDIFEEYI 830

Query: 2610 VHLQ 2621
             HLQ
Sbjct: 831  THLQ 834



 Score = 82.4 bits (202), Expect = 1e-12
 Identities = 36/53 (67%), Positives = 46/53 (86%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D++ SD+D+KE+ KK R+H SDRKKSRKH YSP+SDGESRHK+H+RD+RD  R
Sbjct: 924  DDISSDKDEKEDSKK-RKHSSDRKKSRKHAYSPESDGESRHKKHRRDHRDSRR 975


>ref|XP_002320019.2| FF domain-containing family protein [Populus trichocarpa]
            gi|550323102|gb|EEE98334.2| FF domain-containing family
            protein [Populus trichocarpa]
          Length = 1019

 Score =  750 bits (1937), Expect = 0.0
 Identities = 429/855 (50%), Positives = 524/855 (61%), Gaps = 24/855 (2%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGP-NQPIRPNQPMQFSXXX 305
            PQ+ G     QFRP VP QQGQP++  +S QF P GQ MPS     P   +Q +QFS   
Sbjct: 5    PQSSG----GQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPI 60

Query: 306  XXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHSGV-GGMGAPFSS 482
                                  YGQ NRP+T  + Q Q +APP +NH  V G  G P SS
Sbjct: 61   QQLPPWPNQPGAPSAQALSMP-YGQLNRPLT--SSQPQQNAPPLSNHMHVVGTSGVPNSS 117

Query: 483  SYTFQ-------QGSHLNTPQ-----------APNXXXXXXXXXXXXXXXXXXXXXXVNQ 608
             Y F        Q S    PQ            P                       V Q
Sbjct: 118  PYAFAPSSFGLTQNSASALPQFPPMSQMHAHVVPMGGQPWLSSGSHGASLVPPVQPAVVQ 177

Query: 609  PTVSAAPVPVINPADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERAD 788
            P++S++    +  + ++Q S SDWQEHT  DGRRYYYN++TKQSSW+KP ELMTP+ERAD
Sbjct: 178  PSISSSSDSTVAVSSNSQQSLSDWQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERAD 237

Query: 789  ASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQ 968
            ASTVWKEFTT EGKKYYYNKVTK+SKWSIPEELK+AREQA+   Q VG   Q +T   + 
Sbjct: 238  ASTVWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQ---QTVGQGNQSETDAASN 294

Query: 969  PAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHS 1148
               A + TS E   +A                     +  + N    V   S    V HS
Sbjct: 295  VPTAVAVTSSETSTTAVSVSSSSVMLPGVSSSPIS--VTAVANPPPVVVSGSPALPVAHS 352

Query: 1149 VSQTSKDITNSPAVTTPLSASTSGDAGLPAAS-SASSTIVNASDRLPSQEISNTTNGALV 1325
             + ++  +  S    TPL  + S   G PAA+  A +T +++ D L SQ  +N+ +GA +
Sbjct: 353  TTASAVGVQPS---VTPLPTAVSVGTGAPAAAVDAKTTSLSSIDNLLSQSAANSVDGASM 409

Query: 1326 QDAAESREGVVVAGKVD---LVEKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQ 1496
             D AE  +  +  GK +   L EK  D+EPLVFA K EAK+AFK LLESANVQSDW W+Q
Sbjct: 410  MDTAEFNKVSMDMGKTNASPLEEKTPDEEPLVFANKLEAKNAFKALLESANVQSDWTWEQ 469

Query: 1497 AMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVL 1676
             MR I+NDKRY ALKTLGERKQAFNEYLGQRKK EAEERR+RQKKA+EEF KMLEES+ L
Sbjct: 470  TMREIINDKRYAALKTLGERKQAFNEYLGQRKKLEAEERRVRQKKAREEFAKMLEESKEL 529

Query: 1677 TSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWK 1856
            TSSMKWSKAI+LFE+DER+KA+E+ +DR++LF++Y+V                    Y K
Sbjct: 530  TSSMKWSKAISLFENDERYKALERARDREDLFDSYIVDLERKEKEKAAEDRRRNVAEYRK 589

Query: 1857 FLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXX 2036
            FLESCDFI+A+S WRK+QDRLEDD+ C  LEKL+RL IFQDYIR                
Sbjct: 590  FLESCDFIKASSQWRKIQDRLEDDERCLCLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQ 649

Query: 2037 XRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLF 2216
             RRAERKNRDEFR +LE  VA+G LTAKT W +YC KVK+   Y AVA NTSGS PKDLF
Sbjct: 650  LRRAERKNRDEFRKLLEEHVASGSLTAKTHWLDYCLKVKDLPPYQAVATNTSGSKPKDLF 709

Query: 2217 EDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVF 2396
            EDV +ELE QYHDDK+R+KDAMKL KITM S+WTFE+FK ++  ++GSPPISDINLKL++
Sbjct: 710  EDVSEELEKQYHDDKTRIKDAMKLGKITMVSTWTFEDFKGAVADDIGSPPISDINLKLLY 769

Query: 2397 XXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNE 2576
                             +QRL DDFT LL + KE+T SS WED K   E+S+EYR IG E
Sbjct: 770  EELVERAKEKEEKEAKKQQRLADDFTKLLYTLKEVTPSSNWEDCKPLFEESQEYRSIGEE 829

Query: 2577 TLARETFEDYVVHLQ 2621
            +L++E FE+YV HLQ
Sbjct: 830  SLSKEIFEEYVTHLQ 844



 Score = 94.0 bits (232), Expect = 4e-16
 Identities = 41/53 (77%), Positives = 49/53 (92%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+V SD+D+KEE KKSR+H SDRKKSRKH Y+P+SDGES+HKRHKRD+RDGSR
Sbjct: 937  DDVNSDKDEKEESKKSRKHSSDRKKSRKHTYTPESDGESQHKRHKRDHRDGSR 989


>gb|EMJ28229.1| hypothetical protein PRUPE_ppa000697mg [Prunus persica]
          Length = 1031

 Score =  749 bits (1935), Expect = 0.0
 Identities = 428/879 (48%), Positives = 536/879 (60%), Gaps = 42/879 (4%)
 Frame = +3

Query: 111  IATMGTPQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMP-SGPNQPIRPNQPM 287
            +A++G PQ+FG     Q+RP VP QQGQ ++  +S QF P GQ +P S    P   +Q +
Sbjct: 18   VASLG-PQSFGSSPSLQYRPVVPTQQGQQFIQSASQQFQPVGQGIPSSNVGMPASQSQQL 76

Query: 288  QFSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNH-SGVGGM 464
            QFS                              RP+T    Q+Q  A P+NN   G+ G 
Sbjct: 77   QFSQPMQPYPLRPSQPGHATPSSQALPMQYMQTRPITSAPSQSQQPALPFNNQMPGLAGG 136

Query: 465  GAPFSSSYTFQQGSHL---NTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVP 635
            G P+SSSY F   S+    N   + +                       NQ      PVP
Sbjct: 137  GMPYSSSYIFAPPSYAQPQNNVSSSSQFQPISQVQAHVSVTGQPWVSSGNQGAAVPTPVP 196

Query: 636  --------------VINPADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTP 773
                           +N     Q SSSDWQEHT+ DGRRYY+N++TKQSSWEKP ELMTP
Sbjct: 197  QSGQQPSSTTFTDSAVNVPSQTQQSSSDWQEHTSGDGRRYYFNRRTKQSSWEKPLELMTP 256

Query: 774  MERADASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDT 953
            MERADASTVWKE+T+ +GKKYYYNKVT+ESKW+IPEELKLAREQA++   A G   +++ 
Sbjct: 257  MERADASTVWKEYTSSDGKKYYYNKVTRESKWTIPEELKLAREQAQREL-AQGTRSEMNL 315

Query: 954  GINTQPAAA------GSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVN 1115
              +  PA A      GSS+ G   +SA                     +P +V+  +AV 
Sbjct: 316  TSHAPPAVASAETPMGSSSVGPSTSSA---------------------LPGMVSSPVAVI 354

Query: 1116 GASSETS------VGHSV-SQTSKDITNS-----PAVT-TPLSASTSGDAGL-PAASSAS 1253
              SS ++       G SV S     IT       P VT TP  AS SG  G+ P   +A 
Sbjct: 355  PVSSFSNPSPIAPTGSSVASGAQSSITGGVGIQPPVVTVTPPPASVSGSTGVPPTLVNAI 414

Query: 1254 STIVNASDRLPSQEISNTTNGALVQDAAESREGVVVAGKVDLV---EKPTDDEPLVFATK 1424
            +  V+  + + SQ+I +  +GA  QD  E++ G+ VAGKV++    EK  D+EPLV+A+K
Sbjct: 415  TKSVSTFENVTSQDIGSADDGAFTQDIEEAKRGMAVAGKVNVTPSEEKTVDEEPLVYASK 474

Query: 1425 QEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEA 1604
            QEAK+AFK LLESANV SDW W+Q MR I+NDKRYGALKTLGERKQAFNEYLGQRKK E 
Sbjct: 475  QEAKNAFKALLESANVHSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEN 534

Query: 1605 EERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYL 1784
            EERRMRQKKA+EEF+KMLEES+ L S+ +WSKA+++FE+DERFKAVE+ +DR++L+E+Y+
Sbjct: 535  EERRMRQKKAREEFSKMLEESKELMSATRWSKAVSMFENDERFKAVERARDREDLYESYI 594

Query: 1785 VXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERL 1964
            V                    Y KFLESCDFI+ NS WRKVQDRLEDD+ C RLEKL+RL
Sbjct: 595  VELERKEKEKAAEDHKQNIAEYRKFLESCDFIKVNSQWRKVQDRLEDDERCLRLEKLDRL 654

Query: 1965 EIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCG 2144
             IFQDYIR                 RR ERKNRDEFR ++E  VA G LTAKT WR+YC 
Sbjct: 655  LIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDEFRKLMEEHVADGTLTAKTYWRDYCM 714

Query: 2145 KVKESSAYLAVARNTSGSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFE 2324
            KVK+ S+Y AVA NTSGSTPK+LFEDV +ELE QYH+DK+R+KDAMKL K+T+ S+ TFE
Sbjct: 715  KVKDLSSYEAVASNTSGSTPKELFEDVAEELEKQYHEDKARIKDAMKLGKVTLASTLTFE 774

Query: 2325 EFKESILQELGSPPISDINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEIT 2504
            EFK +IL+++G P ISDIN KLV+                 RQRL DDF  LL +FKEIT
Sbjct: 775  EFKVAILEDIGFPSISDINFKLVYEELLERAKEKEEKEAKKRQRLGDDFNKLLHTFKEIT 834

Query: 2505 ASSTWEDSKQFIEDSEEYREIGNETLARETFEDYVVHLQ 2621
            ASS WED K   E+++EYR IG E  +RE FE+Y+ +LQ
Sbjct: 835  ASSNWEDCKHLFEETQEYRSIGEENFSREVFEEYITNLQ 873



 Score = 76.3 bits (186), Expect = 9e-11
 Identities = 36/53 (67%), Positives = 47/53 (88%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+VGSD+++KEE KK RRH SDRK+SRKH  +P+SD ESRH+RHKR+++DGSR
Sbjct: 962  DDVGSDKEEKEESKK-RRHSSDRKRSRKH--TPESDSESRHRRHKREHQDGSR 1011


>ref|XP_004141297.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus]
          Length = 985

 Score =  748 bits (1932), Expect = 0.0
 Identities = 415/836 (49%), Positives = 512/836 (61%), Gaps = 6/836 (0%)
 Frame = +3

Query: 132  QNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGP-NQPIRPNQPMQFSXXXX 308
            +N       QFRP +P Q GQ ++  S+ QF  AGQN+ S     P    QP Q+     
Sbjct: 2    ENLSQSSGGQFRPVIPAQPGQAFISSSAQQFQLAGQNISSSNVGVPAGQVQPHQYPQSMP 61

Query: 309  XXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMGAPFSSS 485
                                      RP+T    Q+Q +    NNH  G+G  G P SS 
Sbjct: 62   QLVQRPGHPSYVTPSSQPIQMPYVQTRPLTSVPPQSQQNVAAPNNHMHGLGAHGLPLSSP 121

Query: 486  YTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINPADSNQL 665
            YTFQ  S ++ P +                            +VSA   P  N    NQ 
Sbjct: 122  YTFQPMSQMHAPVSVGNSQPWLSSASQTTNLVSPIDQANQHSSVSAVN-PAANAPVFNQQ 180

Query: 666  SSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEGKKYYYN 845
             SSDWQEH + DGRRYYYNKKTKQSSWEKP ELMTP+ERADASTVWKEFT P+G+KYYYN
Sbjct: 181  LSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYN 240

Query: 846  KVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINT-QPAAAGSSTSGELPASAXX 1022
            KVTKESKW++PEELKLAREQA+K A       Q D  +   QP  A   +  E PA +  
Sbjct: 241  KVTKESKWTMPEELKLAREQAQKEAT---QGTQTDISVMAPQPTLAAGLSHAETPAISSV 297

Query: 1023 XXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHSVSQTSKDITNSPAVTTPL 1202
                                   V+ S +V    S    G  ++ T    T+     +  
Sbjct: 298  NSSISPTVSGVATSPVPVTPFVSVSNSPSVMVTGSSAITGTPIAST----TSVSGTVSSQ 353

Query: 1203 SASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVVVAGKVD-- 1376
            S + SG  G PA   A+++ V   + L SQ++ NT +G   +D  E+R+G+ VAGKV+  
Sbjct: 354  SVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNET 413

Query: 1377 -LVEKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRYGALKTLGE 1553
             L EK  DDEPLVFA KQEAK+AFK LLES NVQSDW W+QAMR I+NDKRYGALKTLGE
Sbjct: 414  VLEEKSADDEPLVFANKQEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGE 473

Query: 1554 RKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAITLFEDDERF 1733
            RKQAF+EYLG RKK +AEERR+RQKKA+EEFTKMLEES+ LTSS +WSKA+++FE+DERF
Sbjct: 474  RKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERF 533

Query: 1734 KAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEANSLWRKVQD 1913
            KAVE+ +DR++LFE+Y+V                    Y KFLESCD+I+ +S WRKVQD
Sbjct: 534  KAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFLESCDYIKVSSQWRKVQD 593

Query: 1914 RLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDEFRNMLEAD 2093
            RLEDD+ CSRLEKL+RL IFQDYIR                 RR ERKNRDEFR ++E  
Sbjct: 594  RLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEDQKKIQKERVRRIERKNRDEFRKLMEEH 653

Query: 2094 VAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQYHDDKSRVK 2273
            +AAGV TAKT WR+YC KVKE   Y AVA NTSGSTPKDLFEDV+++LEN+YH++K+++K
Sbjct: 654  IAAGVFTAKTFWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVLEDLENKYHEEKTQIK 713

Query: 2274 DAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXXXXXXXXRQ 2453
            D +K  KIT+TSSWTF++FK +I +E GS  +SDIN KLV+                 RQ
Sbjct: 714  DVVKAAKITITSSWTFDDFKAAI-EESGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQ 772

Query: 2454 RLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYVVHLQ 2621
            RL DDF+ LL+S KEIT SS WEDSKQ  E+SEEYR IG E+ A+E FE+++ HLQ
Sbjct: 773  RLADDFSGLLQSLKEITTSSNWEDSKQLFEESEEYRSIGEESFAKEVFEEHITHLQ 828



 Score = 92.0 bits (227), Expect = 2e-15
 Identities = 40/57 (70%), Positives = 50/57 (87%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSRGVHN 3128
            D+  SD+D++EE KKSR+HGSDRKKSRKH YSP+SD E+RH+RHKRD+RDGSR  H+
Sbjct: 915  DDGASDKDEREESKKSRKHGSDRKKSRKHAYSPESDSENRHRRHKRDHRDGSRRNHD 971


>ref|XP_006343435.1| PREDICTED: pre-mRNA-processing protein 40A-like isoform X3 [Solanum
            tuberosum]
          Length = 864

 Score =  732 bits (1890), Expect = 0.0
 Identities = 420/844 (49%), Positives = 525/844 (62%), Gaps = 13/844 (1%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLH--GSSPQFPPAGQN----MPSGPNQPIRPNQPMQ 290
            PQ FG   P QFRPA+  QQGQ +     +SPQ+ P GQ     MP G  Q  + +Q MQ
Sbjct: 23   PQGFGS-FPMQFRPALSTQQGQHFAPPISASPQYRPVGQTPNAGMPPGQGQIPQFSQTMQ 81

Query: 291  FSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMG 467
                                       Y Q + P      Q Q   PP N+H  GV G G
Sbjct: 82   -----QFPPRPGQSGHGTPSSQAIQMSYIQSSIP------QPQQVNPPLNSHMPGVSGAG 130

Query: 468  APFSSSYTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINP 647
             PFSSSYT Q  S ++ P  P                        +Q +  A  VP    
Sbjct: 131  NPFSSSYTVQSSSQMHGPTFPAGGQTWLSSGSQTTPVAAPTPPSSHQLSAVAPAVPA--- 187

Query: 648  ADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEG 827
            + ++Q ++SDWQE+   DGRRYYYNK TKQSSWEKP ELMTP+ERADASTVWKEFTT +G
Sbjct: 188  STASQQTASDWQEYEAADGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWKEFTTADG 247

Query: 828  KKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSGELP 1007
            +KYYYNK TK+SKW+IP+ELKLARE AE AA   G VVQ  T  N+    + + T  E P
Sbjct: 248  RKYYYNKETKQSKWTIPDELKLARELAENAA---GQVVQTGTSTNSGVQVSEAVTPAEQP 304

Query: 1008 ASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQS---LAVNGASSETSVGHSVSQTSKDITN 1178
            ++                       P + + +   L V+G+S+  SV  S++ TS    +
Sbjct: 305  SAVTPVSSTPSSTVSGVASSPVPVTPAVSDVNTPPLVVSGSSAIPSV--SLAVTSSAGVS 362

Query: 1179 SPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVV 1358
            SPAV        SG     A ++A  T ++  + L S +++++ +GA  QD  E+++G+ 
Sbjct: 363  SPAV--------SGSTESAALANAYQTQMSGIENL-SPQVASSLSGASSQDIEEAKKGMA 413

Query: 1359 VAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRY 1529
            VAGK+++V   EK  D+EP ++ATKQEAK+AFK LLESANV+SDW W+Q MRVI+NDKRY
Sbjct: 414  VAGKINVVPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRVIINDKRY 473

Query: 1530 GALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAIT 1709
            GALKTLGERKQAFNEYL QRKKQEAEERR+RQ+KAKEEFTKMLEES+ LTSS +WSKA+T
Sbjct: 474  GALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRWSKAVT 533

Query: 1710 LFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEAN 1889
            +FEDDERFKAVE+  DR++LF NYLV                    Y +FLE+C FI+ +
Sbjct: 534  MFEDDERFKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVD 593

Query: 1890 SLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDE 2069
            + WRKVQD LEDD+ CSRLEKL+RLEIFQ+YIR                 RRAERKNRD 
Sbjct: 594  TQWRKVQDLLEDDERCSRLEKLDRLEIFQEYIRDLEKEDEEQRKLQKEQLRRAERKNRDA 653

Query: 2070 FRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQY 2249
            FR M+E  +AAG+LTAKTSWR+YC  VKE  AY AVA NTSGSTPKDLFEDV +ELE QY
Sbjct: 654  FRKMIEEHIAAGMLTAKTSWRDYCQMVKEFVAYQAVASNTSGSTPKDLFEDVTEELEKQY 713

Query: 2250 HDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXX 2429
            H+DK RVKD +K  KIT++S+WTFE+FK +I + +GSP I D+NL+L+F           
Sbjct: 714  HEDKIRVKDVVKSEKITISSTWTFEDFKVAIFEGIGSPSIHDVNLQLIFEDLVERAKEKE 773

Query: 2430 XXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYV 2609
                   QRL  DFTD L S KEIT SS+WE+SK+ +EDS E+R IG ET++R  FE+YV
Sbjct: 774  EKEAKKHQRLAKDFTDKLSSIKEITDSSSWEESKELVEDSSEFRAIGEETISRAVFEEYV 833

Query: 2610 VHLQ 2621
              LQ
Sbjct: 834  AWLQ 837


>ref|XP_006343434.1| PREDICTED: pre-mRNA-processing protein 40A-like isoform X2 [Solanum
            tuberosum]
          Length = 872

 Score =  732 bits (1890), Expect = 0.0
 Identities = 420/844 (49%), Positives = 525/844 (62%), Gaps = 13/844 (1%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLH--GSSPQFPPAGQN----MPSGPNQPIRPNQPMQ 290
            PQ FG   P QFRPA+  QQGQ +     +SPQ+ P GQ     MP G  Q  + +Q MQ
Sbjct: 23   PQGFGS-FPMQFRPALSTQQGQHFAPPISASPQYRPVGQTPNAGMPPGQGQIPQFSQTMQ 81

Query: 291  FSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMG 467
                                       Y Q + P      Q Q   PP N+H  GV G G
Sbjct: 82   -----QFPPRPGQSGHGTPSSQAIQMSYIQSSIP------QPQQVNPPLNSHMPGVSGAG 130

Query: 468  APFSSSYTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINP 647
             PFSSSYT Q  S ++ P  P                        +Q +  A  VP    
Sbjct: 131  NPFSSSYTVQSSSQMHGPTFPAGGQTWLSSGSQTTPVAAPTPPSSHQLSAVAPAVPA--- 187

Query: 648  ADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEG 827
            + ++Q ++SDWQE+   DGRRYYYNK TKQSSWEKP ELMTP+ERADASTVWKEFTT +G
Sbjct: 188  STASQQTASDWQEYEAADGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWKEFTTADG 247

Query: 828  KKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSGELP 1007
            +KYYYNK TK+SKW+IP+ELKLARE AE AA   G VVQ  T  N+    + + T  E P
Sbjct: 248  RKYYYNKETKQSKWTIPDELKLARELAENAA---GQVVQTGTSTNSGVQVSEAVTPAEQP 304

Query: 1008 ASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQS---LAVNGASSETSVGHSVSQTSKDITN 1178
            ++                       P + + +   L V+G+S+  SV  S++ TS    +
Sbjct: 305  SAVTPVSSTPSSTVSGVASSPVPVTPAVSDVNTPPLVVSGSSAIPSV--SLAVTSSAGVS 362

Query: 1179 SPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVV 1358
            SPAV        SG     A ++A  T ++  + L S +++++ +GA  QD  E+++G+ 
Sbjct: 363  SPAV--------SGSTESAALANAYQTQMSGIENL-SPQVASSLSGASSQDIEEAKKGMA 413

Query: 1359 VAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRY 1529
            VAGK+++V   EK  D+EP ++ATKQEAK+AFK LLESANV+SDW W+Q MRVI+NDKRY
Sbjct: 414  VAGKINVVPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRVIINDKRY 473

Query: 1530 GALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAIT 1709
            GALKTLGERKQAFNEYL QRKKQEAEERR+RQ+KAKEEFTKMLEES+ LTSS +WSKA+T
Sbjct: 474  GALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRWSKAVT 533

Query: 1710 LFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEAN 1889
            +FEDDERFKAVE+  DR++LF NYLV                    Y +FLE+C FI+ +
Sbjct: 534  MFEDDERFKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVD 593

Query: 1890 SLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDE 2069
            + WRKVQD LEDD+ CSRLEKL+RLEIFQ+YIR                 RRAERKNRD 
Sbjct: 594  TQWRKVQDLLEDDERCSRLEKLDRLEIFQEYIRDLEKEDEEQRKLQKEQLRRAERKNRDA 653

Query: 2070 FRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQY 2249
            FR M+E  +AAG+LTAKTSWR+YC  VKE  AY AVA NTSGSTPKDLFEDV +ELE QY
Sbjct: 654  FRKMIEEHIAAGMLTAKTSWRDYCQMVKEFVAYQAVASNTSGSTPKDLFEDVTEELEKQY 713

Query: 2250 HDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXX 2429
            H+DK RVKD +K  KIT++S+WTFE+FK +I + +GSP I D+NL+L+F           
Sbjct: 714  HEDKIRVKDVVKSEKITISSTWTFEDFKVAIFEGIGSPSIHDVNLQLIFEDLVERAKEKE 773

Query: 2430 XXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYV 2609
                   QRL  DFTD L S KEIT SS+WE+SK+ +EDS E+R IG ET++R  FE+YV
Sbjct: 774  EKEAKKHQRLAKDFTDKLSSIKEITDSSSWEESKELVEDSSEFRAIGEETISRAVFEEYV 833

Query: 2610 VHLQ 2621
              LQ
Sbjct: 834  AWLQ 837


>ref|XP_006343433.1| PREDICTED: pre-mRNA-processing protein 40A-like isoform X1 [Solanum
            tuberosum]
          Length = 1031

 Score =  732 bits (1890), Expect = 0.0
 Identities = 420/844 (49%), Positives = 525/844 (62%), Gaps = 13/844 (1%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLH--GSSPQFPPAGQN----MPSGPNQPIRPNQPMQ 290
            PQ FG   P QFRPA+  QQGQ +     +SPQ+ P GQ     MP G  Q  + +Q MQ
Sbjct: 23   PQGFGS-FPMQFRPALSTQQGQHFAPPISASPQYRPVGQTPNAGMPPGQGQIPQFSQTMQ 81

Query: 291  FSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMG 467
                                       Y Q + P      Q Q   PP N+H  GV G G
Sbjct: 82   -----QFPPRPGQSGHGTPSSQAIQMSYIQSSIP------QPQQVNPPLNSHMPGVSGAG 130

Query: 468  APFSSSYTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINP 647
             PFSSSYT Q  S ++ P  P                        +Q +  A  VP    
Sbjct: 131  NPFSSSYTVQSSSQMHGPTFPAGGQTWLSSGSQTTPVAAPTPPSSHQLSAVAPAVPA--- 187

Query: 648  ADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEG 827
            + ++Q ++SDWQE+   DGRRYYYNK TKQSSWEKP ELMTP+ERADASTVWKEFTT +G
Sbjct: 188  STASQQTASDWQEYEAADGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWKEFTTADG 247

Query: 828  KKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSGELP 1007
            +KYYYNK TK+SKW+IP+ELKLARE AE AA   G VVQ  T  N+    + + T  E P
Sbjct: 248  RKYYYNKETKQSKWTIPDELKLARELAENAA---GQVVQTGTSTNSGVQVSEAVTPAEQP 304

Query: 1008 ASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQS---LAVNGASSETSVGHSVSQTSKDITN 1178
            ++                       P + + +   L V+G+S+  SV  S++ TS    +
Sbjct: 305  SAVTPVSSTPSSTVSGVASSPVPVTPAVSDVNTPPLVVSGSSAIPSV--SLAVTSSAGVS 362

Query: 1179 SPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVV 1358
            SPAV        SG     A ++A  T ++  + L S +++++ +GA  QD  E+++G+ 
Sbjct: 363  SPAV--------SGSTESAALANAYQTQMSGIENL-SPQVASSLSGASSQDIEEAKKGMA 413

Query: 1359 VAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRY 1529
            VAGK+++V   EK  D+EP ++ATKQEAK+AFK LLESANV+SDW W+Q MRVI+NDKRY
Sbjct: 414  VAGKINVVPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRVIINDKRY 473

Query: 1530 GALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAIT 1709
            GALKTLGERKQAFNEYL QRKKQEAEERR+RQ+KAKEEFTKMLEES+ LTSS +WSKA+T
Sbjct: 474  GALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRWSKAVT 533

Query: 1710 LFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEAN 1889
            +FEDDERFKAVE+  DR++LF NYLV                    Y +FLE+C FI+ +
Sbjct: 534  MFEDDERFKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVD 593

Query: 1890 SLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDE 2069
            + WRKVQD LEDD+ CSRLEKL+RLEIFQ+YIR                 RRAERKNRD 
Sbjct: 594  TQWRKVQDLLEDDERCSRLEKLDRLEIFQEYIRDLEKEDEEQRKLQKEQLRRAERKNRDA 653

Query: 2070 FRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQY 2249
            FR M+E  +AAG+LTAKTSWR+YC  VKE  AY AVA NTSGSTPKDLFEDV +ELE QY
Sbjct: 654  FRKMIEEHIAAGMLTAKTSWRDYCQMVKEFVAYQAVASNTSGSTPKDLFEDVTEELEKQY 713

Query: 2250 HDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXX 2429
            H+DK RVKD +K  KIT++S+WTFE+FK +I + +GSP I D+NL+L+F           
Sbjct: 714  HEDKIRVKDVVKSEKITISSTWTFEDFKVAIFEGIGSPSIHDVNLQLIFEDLVERAKEKE 773

Query: 2430 XXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYV 2609
                   QRL  DFTD L S KEIT SS+WE+SK+ +EDS E+R IG ET++R  FE+YV
Sbjct: 774  EKEAKKHQRLAKDFTDKLSSIKEITDSSSWEESKELVEDSSEFRAIGEETISRAVFEEYV 833

Query: 2610 VHLQ 2621
              LQ
Sbjct: 834  AWLQ 837



 Score = 89.0 bits (219), Expect = 1e-14
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            DEV SDRD+KEE++KS RH SDRKKS+KH +SP+SDGESRHKRH+RD RDGSR
Sbjct: 961  DEVTSDRDEKEEFRKSHRHSSDRKKSKKHAHSPESDGESRHKRHRRD-RDGSR 1012


>gb|EOY15664.1| Pre-mRNA-processing protein 40A isoform 4 [Theobroma cacao]
          Length = 844

 Score =  730 bits (1884), Expect = 0.0
 Identities = 410/822 (49%), Positives = 507/822 (61%), Gaps = 33/822 (4%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQ++G P+ SQFRP VP QQGQ ++  +S QF P GQ   S    P   NQ MQFS    
Sbjct: 23   PQSYGSPLSSQFRPVVPMQQGQHFVPAASQQFRPVGQVPSSNVGMPAVQNQQMQFSQPMQ 82

Query: 309  XXXXXXXXXXXXXXXXXXXXX-YGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMGAPFSS 482
                                  +GQ NRP+T G+ Q+  +APP N+H  G+G  G P SS
Sbjct: 83   QFPPRPNQPGLSAPSAQPMHVPFGQTNRPLTSGSPQSHQTAPPLNSHMPGLGAPGMPPSS 142

Query: 483  SYTFQQGS----HLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPV------ 632
            SY++   S      N   +                         NQ    A P+      
Sbjct: 143  SYSYVPSSFGQPQNNVSASSQFQPTSQVHASVAPVAGQPWLSSGNQSVSLAIPIQQTGQQ 202

Query: 633  -PVINPADS-------NQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERAD 788
             P+I+ AD+          S+SDWQEHT+ DGRRYYYNKKT+QSSWEKP ELMTP+ERAD
Sbjct: 203  PPLISSADTAANAPIHTPPSASDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERAD 262

Query: 789  ASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQ 968
            ASTVWKEFTTPEG+KYYYNKVTK+SKW+IPEELKLAREQA+  A         DTG+ +Q
Sbjct: 263  ASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS---QGAPSDTGVASQ 319

Query: 969  PAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHS 1148
               AG+ +S E+PA+A                     +  + N S  +   S+   V  S
Sbjct: 320  APVAGAVSSAEMPAAAIPVSSNTSQASSPVSVTP---VAAVANPSPTLVSGSTVVPVSQS 376

Query: 1149 VSQTSKDITNSPAVTTPLSASTSGDAGLPAAS-SASSTIVNASDRLPSQEISNTTNGALV 1325
             +  + ++ +     TPL A +SG +  P  S +A++T++ + +   SQ+  + TNGA  
Sbjct: 377  AATNASEVQSPAVAVTPLPAVSSGGSTTPVTSVNANTTMIRSLESTASQDSVHFTNGASA 436

Query: 1326 QDAAESREGVVVAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQ 1496
            QD  E+++G+  AGKV++    EK  DDEPLV+A KQEAK+AFK LLESANVQSDW W+Q
Sbjct: 437  QDIEEAKKGMATAGKVNVTPVEEKVPDDEPLVYANKQEAKNAFKSLLESANVQSDWTWEQ 496

Query: 1497 AMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVL 1676
             MR I+NDKRYGALKTLGERKQAFNEYLGQRKK EAEERRMRQKKA+EEFTKMLEES+ L
Sbjct: 497  TMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKEL 556

Query: 1677 TSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWK 1856
            TSSM+WSKA +LFE+DERFKAVE+ +DR++LFENY+V                    Y K
Sbjct: 557  TSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVELERKERENAAEEKRRNIAEYRK 616

Query: 1857 FLESCDF---------IEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXX 2009
            FLESCDF         I+ANS WRKVQDRLEDD+ CSRLEK++RL +FQDYI        
Sbjct: 617  FLESCDFIKVQHFQKRIQANSQWRKVQDRLEDDERCSRLEKIDRLVMFQDYIHDLEKEEE 676

Query: 2010 XXXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNT 2189
                      RRAERKNRD FR +++  V  G LTAKT WR+YC KVK+   YLAVA NT
Sbjct: 677  EKKKMQKEQLRRAERKNRDAFRKLMDEHVVDGTLTAKTYWRDYCLKVKDLPPYLAVASNT 736

Query: 2190 SGSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPI 2369
            SGSTPKDLFEDVV+ELE QY  DK+ +KDAMK  KI+M S+WT E+FK +I +++GS PI
Sbjct: 737  SGSTPKDLFEDVVEELEKQYQQDKTHIKDAMKSGKISMVSTWTVEDFKAAISEDVGSLPI 796

Query: 2370 SDINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFK 2495
            SDINLKLV+                 RQRL DDFT LL ++K
Sbjct: 797  SDINLKLVYEELLKSAKEKEEKEAKKRQRLADDFTKLLHTYK 838


>ref|XP_006827042.1| hypothetical protein AMTR_s00010p00227470 [Amborella trichopoda]
            gi|548831471|gb|ERM94279.1| hypothetical protein
            AMTR_s00010p00227470 [Amborella trichopoda]
          Length = 985

 Score =  719 bits (1855), Expect = 0.0
 Identities = 405/863 (46%), Positives = 512/863 (59%), Gaps = 30/863 (3%)
 Frame = +3

Query: 123  GTPQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPS---GPNQPIRPNQPMQF 293
            G PQN+G P+  QFRP VP QQ QP++   S QF P GQ +P+   G   P++  Q    
Sbjct: 4    GGPQNYGTPMSMQFRPMVPTQQSQPFISAPSQQFRPVGQGIPASNIGSPSPVQAQQAQYA 63

Query: 294  SXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHS-GVGGMGA 470
                                      Y QPNRPMT G  Q   +    N H  G+GG G 
Sbjct: 64   LGMQQLPPRPAQTAQVAPSPQTVPLSYIQPNRPMTSGPLQIPQNPQHVNIHPPGLGGPGT 123

Query: 471  PFSSSYTF-------------------QQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXX 593
              SSSYTF                   Q  S +  P  P+                    
Sbjct: 124  VLSSSYTFTAPSSYVHPQNNINISSQYQPSSQMQVPGVPSGSGGQPWLSSGSQSTTVIPP 183

Query: 594  XXV--NQPTVSAAPVPVINPADS-NQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSEL 764
                  Q + +A+  PV  P  +    SSSDWQEHT+ DGRRYYYNKKT+QSSWEKP EL
Sbjct: 184  VVQASQQSSFAASTAPVATPQPNPTSQSSSDWQEHTSADGRRYYYNKKTRQSSWEKPLEL 243

Query: 765  MTPMERADASTVWKEFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQ 944
            MTP+ERADASTVWKEFTTPEG+KYYYNKVTK+SKW+IP+ELKLAREQAEK      +  Q
Sbjct: 244  MTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPDELKLAREQAEK------NGTQ 297

Query: 945  IDTGINTQPAAAGSSTSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGAS 1124
            +     T   A+ +  +  +P +                      +P  V    A   A 
Sbjct: 298  LTNSETTDVVASSTPVTVTVPLT---------------------EMPSTVAAISATQSAM 336

Query: 1125 SETSVGHSVSQTSKDITNSPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISN 1304
              TS           +  SP + TP+  S    A  P+++ A+   +   D +  + I+ 
Sbjct: 337  PSTS----------GMATSPVLVTPV-VSVPAAAVDPSSAGAAYEKIKV-DNVSPESIAQ 384

Query: 1305 TTNGALVQDAAESREGVVVAGKVDLV----EKPTDDEPLVFATKQEAKSAFKLLLESANV 1472
              +    QD  E+R+ + VAGKV++     EK  D+EPLVFA+KQEAK+AFK LL SA+V
Sbjct: 385  VADETSAQDLEEARKAMPVAGKVNITPTSDEKTVDEEPLVFASKQEAKNAFKELLVSAHV 444

Query: 1473 QSDWNWDQAMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTK 1652
            +SDW WDQAMRVI+NDKRYGALKTLGERKQAFNEYLGQRKK EAEE+R RQKKA+E+F K
Sbjct: 445  ESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEEKRTRQKKAREDFVK 504

Query: 1653 MLEESEVLTSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXX 1832
            MLEES+ LTS+ KWSKAIT+FEDDERF+AVE+ +DR+ELFE +L                
Sbjct: 505  MLEESKELTSATKWSKAITMFEDDERFRAVERGRDREELFEMHLEELHRKERAKAQEEHR 564

Query: 1833 XXXXXYWKFLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXX 2012
                 Y  FLESCDFI+A+S WRKVQDRLEDD+ C+RLEK++RLEIFQ+YIR        
Sbjct: 565  RNVQEYRAFLESCDFIKASSQWRKVQDRLEDDERCARLEKIDRLEIFQEYIRDLEKEEEE 624

Query: 2013 XXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTS 2192
                     RRAERKNRD+FR ++E  +AAG+LTAKT WREYC KVK+  AYLAV+ NTS
Sbjct: 625  QRKLQKEHLRRAERKNRDDFRKLMEGHIAAGILTAKTHWREYCMKVKDLPAYLAVSSNTS 684

Query: 2193 GSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPIS 2372
            GSTPKDLFED  +EL+ QY +D++R+KDA+K+ +  MTS+W+FE FKE+I ++     IS
Sbjct: 685  GSTPKDLFEDTAEELDKQYQEDRTRIKDAVKMARFVMTSTWSFENFKEAISEDNNLKSIS 744

Query: 2373 DINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSE 2552
            + NLKLVF                 RQR+ DD  DLL S K+I+ASS WE+ K  +E+++
Sbjct: 745  ETNLKLVFDELLERLKEKEEKEAKKRQRMADDLKDLLYSIKDISASSRWEECKPLLEENQ 804

Query: 2553 EYREIGNETLARETFEDYVVHLQ 2621
             YR I +E+ AR+ FE+YV +LQ
Sbjct: 805  AYRSINDESFARQIFEEYVAYLQ 827



 Score = 66.6 bits (161), Expect = 7e-08
 Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKS--RKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            DE+ S +++KEE K+SRRH SDRK+S  ++H Y  +S  ESRHKRH+RD RDGSR
Sbjct: 915  DELSSGKEEKEESKRSRRHTSDRKRSSRKQHGYESESGSESRHKRHRRD-RDGSR 968


>ref|XP_004242948.1| PREDICTED: pre-mRNA-processing protein 40A-like [Solanum
            lycopersicum]
          Length = 998

 Score =  708 bits (1828), Expect = 0.0
 Identities = 408/849 (48%), Positives = 519/849 (61%), Gaps = 18/849 (2%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLH--GSSPQFPPAGQ----NMPSGPNQPIRPNQPMQ 290
            PQ FG   P QFRPA+  QQGQ +     +SPQ+ P GQ     MP G  Q  + +Q MQ
Sbjct: 23   PQGFGS-FPMQFRPALSTQQGQHFAPPISASPQYRPVGQTPNAGMPPGQGQIPQFSQTMQ 81

Query: 291  FSXXXXXXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNH-SGVGGMG 467
                                       Y Q +        Q Q   PP N+H  GV G G
Sbjct: 82   -----QFPPRPGQPGHGTPSSQAIQMSYNQSS------ISQPQQVNPPLNSHMPGVSGAG 130

Query: 468  APFSSSYTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSA-----APV 632
             PFSSSYT Q  S ++ P  P                       V  PT  +     A  
Sbjct: 131  NPFSSSYTVQSSSQMHGPTFP--------AGGQPWLSSGSQTTPVGDPTPPSSHQLLAVA 182

Query: 633  PVINPADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEF 812
            P +  + ++Q ++SDWQE+   DGRRYYYNK TKQSSWEKP ELMTP+ERADASTVWKEF
Sbjct: 183  PAVPASTASQQTASDWQEYEAADGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWKEF 242

Query: 813  TTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSST 992
            TT +G+KYYYNK TK+SKW++P+ELKLARE AE  A     VVQ  T  N+    + + T
Sbjct: 243  TTADGRKYYYNKETKQSKWTMPDELKLARELAENVA---SQVVQTGTSTNSGVQVSEAVT 299

Query: 993  SGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQS---LAVNGASSETSVGHSVSQTS 1163
            S E P++                       P + + +   L V+G+S+  +V  +V    
Sbjct: 300  STEQPSAVTPVSSTPSSTVSGVPSSPVPVTPAVSDVNTPPLVVSGSSAIPTVSFAV---- 355

Query: 1164 KDITNSPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAES 1343
               T+S  +++P   + SG+    A ++A  T ++  + L S +++++ +GA  QD  E+
Sbjct: 356  ---TSSAGISSP---AVSGNTRSAALANAYQTQMSGIENL-SPQVASSLSGASSQDIEEA 408

Query: 1344 REGVVVAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIV 1514
            ++G+ VAGK+++V   EK  D+EP ++ATKQEAK AFK LLESA V+SDW W+Q MRVI+
Sbjct: 409  KKGMAVAGKINVVPAEEKSADEEPFLYATKQEAKHAFKSLLESATVESDWTWEQTMRVII 468

Query: 1515 NDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKW 1694
            NDKRYGALKTLGERKQAFNEYL QRKKQEAEERR+RQ+KAKEEFTKMLEES+ LTSS +W
Sbjct: 469  NDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRW 528

Query: 1695 SKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCD 1874
            SKA+T+FEDDERFK VE+  DR++LF NYLV                    Y +FLE+C 
Sbjct: 529  SKAVTMFEDDERFKGVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCG 588

Query: 1875 FIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAER 2054
            FI+ ++ WRKVQD LEDD+ CSRLEKL+RL+IFQ+YIR                 RRAER
Sbjct: 589  FIKVDTQWRKVQDLLEDDERCSRLEKLDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRAER 648

Query: 2055 KNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDE 2234
            KNRD FR M+E  +AAG+LTAKT WR+Y   VKES AY AVA NTSGSTPKDLFEDV +E
Sbjct: 649  KNRDAFRKMIEEHIAAGMLTAKTYWRDYWQMVKESVAYQAVASNTSGSTPKDLFEDVTEE 708

Query: 2235 LENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXX 2414
            LE QYH+DK  VKD +K  KIT++ + TFE+FK +IL+ + SP I D+NL+L+F      
Sbjct: 709  LEKQYHEDKIHVKDVVKSEKITISPTCTFEDFKVAILEGISSPSIQDVNLQLIFEDLVER 768

Query: 2415 XXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARET 2594
                       RQRL  DFTD L S KEIT SS+WE+SK+ +EDS E+R IG ET++R  
Sbjct: 769  AKEKEEKEAKKRQRLAKDFTDKLSSIKEITDSSSWEESKELVEDSSEFRAIGEETISRAV 828

Query: 2595 FEDYVVHLQ 2621
            FE+YV  LQ
Sbjct: 829  FEEYVAWLQ 837



 Score = 82.4 bits (202), Expect = 1e-12
 Identities = 38/53 (71%), Positives = 47/53 (88%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            DE+ SD+D+KEE +KS RH SDRKKS+KH +SP+SDGESRHKR++RD RDGSR
Sbjct: 928  DELTSDKDEKEESRKSHRHSSDRKKSKKHAHSPESDGESRHKRYRRD-RDGSR 979


>ref|XP_002510055.1| protein binding protein, putative [Ricinus communis]
            gi|223550756|gb|EEF52242.1| protein binding protein,
            putative [Ricinus communis]
          Length = 970

 Score =  700 bits (1807), Expect = 0.0
 Identities = 409/829 (49%), Positives = 502/829 (60%), Gaps = 7/829 (0%)
 Frame = +3

Query: 156  SQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPS--GPNQPIRPNQPMQFSXXXXXXXXXXX 329
            +QFRPA   QQGQP++     QF P  Q MPS  G   P    Q +QFS           
Sbjct: 10   TQFRPA---QQGQPFM---PQQFLPVVQGMPSNVGMPMPAGQTQTLQFSQPMQPPPWPNH 63

Query: 330  XXXXXXXXXXXXXX-YGQPNRP-MTLGAQQNQHSAPPYNNHSGVGGMGAPFSSSYTFQQG 503
                           Y   NRP +T G  Q Q +A  +   S  G +     SS  FQ  
Sbjct: 64   PAHVAPSSQPVPLPPYVHQNRPPLTSGPPQLQQTASLFAP-SSYGQLQNNAISSSQFQPM 122

Query: 504  SHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINPADSNQLSSSDWQ 683
              ++TP  P                         QP+VS++   V+N    NQ S SDWQ
Sbjct: 123  PQMHTPVVPAGGQHWLPSGSNGVAVATPVQPTGQQPSVSSSSDSVLNVP--NQQSLSDWQ 180

Query: 684  EHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEGKKYYYNKVTKES 863
            EHT  DGRRYYYNK+TKQSSWEKP ELMTP+ERADASTVWKEFTTPEGKKYYYNK+TK+S
Sbjct: 181  EHTASDGRRYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFTTPEGKKYYYNKITKQS 240

Query: 864  KWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSGELPASAXXXXXXXXX 1043
            KWS+P+ELKLAREQA++ A   G   + D    +  +   +++SGE+  +          
Sbjct: 241  KWSMPDELKLAREQAQQTA-TQGTKSEADAA--SHASVTVNASSGEMSTTVIPVGSGFSS 297

Query: 1044 XXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHSVSQTSKDITNSPAVTTPLSASTSGD 1223
                            V+  +A   +SS   V  S+      I N+  V  P    T   
Sbjct: 298  TSGVASSPVPVTPVVAVSNPVAAVSSSSALPVAQSI------IANAAGVQPPAVTMTV-- 349

Query: 1224 AGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVVVAGKVD---LVEKPT 1394
              LPAA+          D + S+  + + +GA +Q++ E ++G  V+ K D     EK  
Sbjct: 350  --LPAAA-------GGFDNVASKGAAPSVDGASIQNSEEVKKGSGVSIKSDANLTEEKNL 400

Query: 1395 DDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRYGALKTLGERKQAFNE 1574
            DDEPL FA+KQEAK+AFK LLESANVQSDW W+Q MR I+NDKRYGALKTLGERKQAFNE
Sbjct: 401  DDEPLTFASKQEAKNAFKALLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNE 460

Query: 1575 YLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAITLFEDDERFKAVEKPK 1754
            YLGQRKK EAEERRMRQK+A+EEFTKMLEES+ LTSSMKWSKA++LFE+DERFKAVEK +
Sbjct: 461  YLGQRKKIEAEERRMRQKRAREEFTKMLEESKELTSSMKWSKAVSLFENDERFKAVEKAR 520

Query: 1755 DRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEANSLWRKVQDRLEDDDS 1934
            DR++LF+NY+V                    + KFLESCDFI+ NS WRKVQDRLEDD+ 
Sbjct: 521  DREDLFDNYIVELERKEREKAAEDHRRNVTEFKKFLESCDFIKVNSQWRKVQDRLEDDER 580

Query: 1935 CSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDEFRNMLEADVAAGVLT 2114
            C RLEKL+RL +FQDYIR                 RRAERKNRD FR +LE  VA G LT
Sbjct: 581  CLRLEKLDRLLVFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDGFRKLLEEHVADGSLT 640

Query: 2115 AKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQYHDDKSRVKDAMKLCK 2294
            AK  W +YC KVK+   Y AVA NTSGSTPKDLFEDV +ELE QY DDK+RVKDA+K  K
Sbjct: 641  AKAHWLDYCLKVKDLPQYHAVATNTSGSTPKDLFEDVAEELEKQYRDDKARVKDAIKSGK 700

Query: 2295 ITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFT 2474
            I MTS+W FE+FK +IL ++ SPP+SDINL+L++                 RQRL DD T
Sbjct: 701  IIMTSTWIFEDFKAAILDDVSSPPVSDINLQLIYDELLERAKEKEEKEAKKRQRLADDLT 760

Query: 2475 DLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYVVHLQ 2621
             LL ++KEI ASS+WED +   E+S+EYR IG E++ +E FE+Y+ HLQ
Sbjct: 761  KLLHTYKEIMASSSWEDCRPLFEESQEYRAIGEESVIKEIFEEYIAHLQ 809



 Score = 87.0 bits (214), Expect = 5e-14
 Identities = 37/53 (69%), Positives = 46/53 (86%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            DEV SD+D+KEE +KSR+H SDRKKSRKH Y+P+SD E+RHK+HKRD R+ SR
Sbjct: 898  DEVSSDKDEKEESRKSRKHSSDRKKSRKHSYTPESDSENRHKKHKRDQRESSR 950


>ref|XP_004292768.1| PREDICTED: pre-mRNA-processing protein 40A-like [Fragaria vesca
            subsp. vesca]
          Length = 990

 Score =  692 bits (1785), Expect = 0.0
 Identities = 401/861 (46%), Positives = 509/861 (59%), Gaps = 40/861 (4%)
 Frame = +3

Query: 156  SQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQ-----PIRPNQPMQFSXXXXXXXX 320
            +Q+RP VP QQGQ ++   S QF P GQ  P   +Q     P+RPNQP            
Sbjct: 10   AQYRPMVPAQQGQHFISPGSQQFQPVGQGQPLQYSQQMQPYPLRPNQP------------ 57

Query: 321  XXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHSGVGGMGAPFSSSYTFQQ 500
                             Y QP RP+T     +Q  APP+NN       G P+ SSY + Q
Sbjct: 58   ----GHAQPSSQALPMPYYQP-RPVTSVPPHSQQPAPPFNNQMP----GMPYPSSYMYAQ 108

Query: 501  GSH---------------LNTPQA---PNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAA 626
             S+               ++  QA   P                         QPT +  
Sbjct: 109  PSYAQPQNNANSSSQFQPMSQDQAHGVPTAGQPWMSSSSHQGAAVTPQQQPSQQPTSTPF 168

Query: 627  PVPVINPADSNQLSSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWK 806
            P P +N  +  Q SSSDWQEH   DGRRYY+N+ T+QSSWEKP ELMTP+ERADASTVWK
Sbjct: 169  PDPAVNAPNLAQPSSSDWQEHMASDGRRYYFNRSTRQSSWEKPLELMTPLERADASTVWK 228

Query: 807  EFTTPEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGS 986
            E+T+ +GKKYYYNKVT+ESKW+IPEELKLAREQA++      H     + + +   A  +
Sbjct: 229  EYTSADGKKYYYNKVTRESKWTIPEELKLAREQAQRE-----HTQGTQSEMTSTSHAPPA 283

Query: 987  STSGELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHSV----- 1151
            + S E+ A A                      P  V    A +  S  T  G SV     
Sbjct: 284  TASAEIHAGASSVGPSTSSAQPGTVSS-----PVAVTPISAFSNPSPTTPSGLSVAPGVQ 338

Query: 1152 -SQTSKDITNSPAVT--TPLSASTSGDAGLPAASSASSTIVNA-----SDRLPSQEISNT 1307
             S  +  +   PAV   +PL AS  G  GLP      ST+VN      ++    Q+ +++
Sbjct: 339  SSMATGSVGVQPAVVNVSPLPASNVGSTGLP------STLVNTITKSVNENQAPQDSASS 392

Query: 1308 TNGALVQDAAESREGVVVAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQS 1478
             +GA  QD  E+++G+ VAGKV++    EK  DDEPLV+A+KQEAK+AFK LLESANV S
Sbjct: 393  IDGASSQDIEEAKKGMAVAGKVNVTPSEEKAIDDEPLVYASKQEAKNAFKSLLESANVHS 452

Query: 1479 DWNWDQAMRVIVNDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKML 1658
            DW W+QAMR I+NDKRYGAL+TLGERKQAFNEYLGQRKK E EERR+RQK+A+EEFTKML
Sbjct: 453  DWTWEQAMREIINDKRYGALRTLGERKQAFNEYLGQRKKLENEERRIRQKRAREEFTKML 512

Query: 1659 EESEVLTSSMKWSKAITLFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXX 1838
            EES+ LTS+++WSKA+T+FE+DERFKAVE+ +DR++L+E+Y+V                 
Sbjct: 513  EESKELTSTIRWSKAVTMFENDERFKAVERARDREDLYESYIVELERKEKEIAAEEHRRN 572

Query: 1839 XXXYWKFLESCDFIEANSLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXX 2018
               Y +FLESCDFI+    WRKVQDRLEDD+ C RL+K +RL IFQD+IR          
Sbjct: 573  ISEYKEFLESCDFIK----WRKVQDRLEDDERCLRLDKFDRLLIFQDHIRDLEKEEEEQK 628

Query: 2019 XXXXXXXRRAERKNRDEFRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSG- 2195
                   RR ERKNRDEFR +LE   A G LTAKT WR+YC KVK+   Y AVA NT G 
Sbjct: 629  KIQKEQLRRIERKNRDEFRKILEEHAADGTLTAKTQWRDYCMKVKDLPQYEAVAANTHGS 688

Query: 2196 STPKDLFEDVVDELENQYHDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISD 2375
            STPKDLFEDV ++LE Q+ +DK+RVKDAMK  +ITM SSWTFEEFK +++ ++G P IS+
Sbjct: 689  STPKDLFEDVAEDLEKQFVEDKARVKDAMKQGQITMVSSWTFEEFKAAVVNDIGFPSISE 748

Query: 2376 INLKLVFXXXXXXXXXXXXXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEE 2555
            +NLKL +                 R R+ DDF  LL +FKEIT SS+WED KQ  E+++E
Sbjct: 749  LNLKLAYEDILERAREKEEKEAKKRLRIADDFHKLLHTFKEITVSSSWEDCKQLFEETQE 808

Query: 2556 YREIGNETLARETFEDYVVHL 2618
            YR +G+E   RE FE+Y+  L
Sbjct: 809  YRSVGDEDFGREIFEEYITSL 829



 Score = 77.8 bits (190), Expect = 3e-11
 Identities = 34/53 (64%), Positives = 46/53 (86%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR 3116
            D+VGSD+++KE+ KK  RH SDRKKSRK  Y+P+SD E+RH+RHK+++RDGSR
Sbjct: 919  DDVGSDKEEKEDSKK-HRHSSDRKKSRKRAYTPESDSENRHRRHKKEHRDGSR 970


>ref|XP_004956604.1| PREDICTED: pre-mRNA-processing protein 40A-like isoform X1 [Setaria
            italica] gi|514729049|ref|XP_004956605.1| PREDICTED:
            pre-mRNA-processing protein 40A-like isoform X2 [Setaria
            italica] gi|514729053|ref|XP_004956606.1| PREDICTED:
            pre-mRNA-processing protein 40A-like isoform X3 [Setaria
            italica] gi|514729057|ref|XP_004956607.1| PREDICTED:
            pre-mRNA-processing protein 40A-like isoform X4 [Setaria
            italica]
          Length = 983

 Score =  689 bits (1779), Expect = 0.0
 Identities = 388/835 (46%), Positives = 496/835 (59%), Gaps = 4/835 (0%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQN GPP+P QFRP VP QQ   ++   + QF P GQ MP           P Q      
Sbjct: 25   PQNLGPPMPMQFRPVVPSQQPPQFMPPPAQQFRPVGQPMPGA-----NIGMPGQMPHFPQ 79

Query: 309  XXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHSGVGGMGAPFSS-S 485
                                 Y QP RPM+    Q Q  A     H     MGAP    S
Sbjct: 80   PGQHLSHSSQVPPASQGVPMAY-QPARPMSSAPMQPQQQAVYPGGHMPT--MGAPMQPPS 136

Query: 486  YTFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPVPVINPADSNQL 665
            YT+Q          P                        +QP  + A +P +N   S++ 
Sbjct: 137  YTYQ----------PTSIPPVVQPWGQSVPHVTPLVQPGHQPVPATATLPSVN---SSEP 183

Query: 666  SSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTTPEGKKYYYN 845
            SSSDWQEHT  +G++YYYNKKT+QSSWEKP ELMTP+ERADAST WKEFTTPEG+KYY+N
Sbjct: 184  SSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFN 243

Query: 846  KVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSGELPASAXXX 1025
            KVTK+SKW+IP+ELK ARE AEKA+       Q D    T  A  GS+ S      A   
Sbjct: 244  KVTKQSKWTIPDELKAARELAEKASNQ-----QSDRETGTAAALVGSAASEPSTVPANQS 298

Query: 1026 XXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHSVSQTSKDITNSPAVTTPLS 1205
                              +PP    S  V+  SS +++G     TS  +   P  T    
Sbjct: 299  STAVGLIAPSTHDASANPVPPGPVPSHNVDNTSSSSTIGMQNGGTSTAVVPVPTSTEVKL 358

Query: 1206 ASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVVVAGKVD--- 1376
             +T  DAG    ++ SS++   +D           +G   +D  E+++ + VAGK++   
Sbjct: 359  VAT--DAGTSRNNNESSSVTTGAD---------IEDGTSAEDLEEAKKTMPVAGKINVTP 407

Query: 1377 LVEKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRYGALKTLGER 1556
            L EK +++EP+V+ATK EAK+AFK LLES NV+SDW W+Q MRVI+NDKRYGALKTLGER
Sbjct: 408  LEEKTSEEEPVVYATKTEAKNAFKSLLESVNVESDWTWEQTMRVIINDKRYGALKTLGER 467

Query: 1557 KQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAITLFEDDERFK 1736
            KQAFNEYL QRKK EAEE+R++Q+KA+++F  MLEE + LTSS +WSKAI +F+DDERFK
Sbjct: 468  KQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEECKELTSSTRWSKAILMFDDDERFK 527

Query: 1737 AVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEANSLWRKVQDR 1916
            AVE+P++R++LFE YLV                    Y  FLESCDFI+A + WRKVQ+R
Sbjct: 528  AVERPREREDLFEGYLVELHKKEKAKAIEEHRRHVAEYKAFLESCDFIKATTQWRKVQER 587

Query: 1917 LEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDEFRNMLEADV 2096
            LEDD+ CSRLEK++RL +FQDYIRY                RR ERKNRD FR MLE  V
Sbjct: 588  LEDDERCSRLEKIDRLNVFQDYIRYLEKEEEEQKRIQKEHVRRQERKNRDGFRKMLEEHV 647

Query: 2097 AAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQYHDDKSRVKD 2276
              G LTAKT WR+YC ++KES AYLAVA NTSGSTPK+LF+DV++EL+ QY DDK+ +K+
Sbjct: 648  NDGTLTAKTRWRDYCSQIKESQAYLAVASNTSGSTPKELFDDVIEELDKQYLDDKTCIKE 707

Query: 2277 AMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXXXXXXXXRQR 2456
             +K  KI MT+SWT EEF+ +IL++     IS IN+KL++                 RQR
Sbjct: 708  VVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQIERLREKEQKDAKKRQR 767

Query: 2457 LTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYVVHLQ 2621
            L ++F+DLL S  EI+A+STW+DSKQ  EDS+E+R + +ET ARE FE+ VVHL+
Sbjct: 768  LGENFSDLLYSITEISAASTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLK 822



 Score = 77.0 bits (188), Expect = 5e-11
 Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 2/58 (3%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDNRDGSR--GVH 3125
            D+  S+RDDK++ KKSRRH SDRKKSRKH ++ DSD E+RHKRH++D RD SR  G H
Sbjct: 913  DDASSERDDKDDAKKSRRHTSDRKKSRKHTHASDSDSENRHKRHRKD-RDSSRRNGAH 969


>ref|NP_175113.2| pre-mRNA-processing protein 40A [Arabidopsis thaliana]
            gi|395406802|sp|B6EUA9.1|PR40A_ARATH RecName:
            Full=Pre-mRNA-processing protein 40A; AltName:
            Full=Mediator of RNA polymerase II transcription subunit
            35a gi|332193941|gb|AEE32062.1| pre-mRNA-processing
            protein 40A [Arabidopsis thaliana]
          Length = 958

 Score =  687 bits (1772), Expect = 0.0
 Identities = 394/844 (46%), Positives = 506/844 (59%), Gaps = 13/844 (1%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQ+ G    +QFRP VPGQQGQ ++  +S  F P G   P+  +QP + +QP+Q      
Sbjct: 6    PQSSG----TQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQ--QQQL 59

Query: 309  XXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHSGVGGMGAPFSSSY 488
                                 Y Q N+ +T G+ Q Q +APP    +G    G PFSS Y
Sbjct: 60   FPVRPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPM---TGFATSGPPFSSPY 116

Query: 489  TFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPV-------PVINP 647
            TF   S+                              VNQ T   +PV       PV   
Sbjct: 117  TFVPSSYPQQQPTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVS 176

Query: 648  ADSNQL---SSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTT 818
             D   L   S+SDWQEHT+ DGR+YYYNK+TKQS+WEKP ELMTP+ERADASTVWKEFTT
Sbjct: 177  TDPGNLTPQSASDWQEHTSADGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWKEFTT 236

Query: 819  PEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSG 998
            PEGKKYYYNKVTKESKW+IPE+LKLAREQA+ A++             T  + AGS+   
Sbjct: 237  PEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASE------------KTSLSEAGSTPLS 284

Query: 999  ELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHSVSQTSKDITN 1178
               AS+                         V+   +V  ++S    GHS S     +  
Sbjct: 285  HHAASSSDL---------------------AVSTVTSVVPSTSSALTGHSSSPIQAGLA- 322

Query: 1179 SPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVV 1358
             P    P  A  +  +G  A S   +T +   D L S+   ++ +GA  Q+     + + 
Sbjct: 323  VPVTRPPSVAPVTPTSG--AISDTEATTIK-GDNLSSRGADDSNDGATAQNNEAENKEMS 379

Query: 1359 VAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRY 1529
            V GK +L    +K   +EP+V+ATKQEAK+AFK LLES NV SDW W+Q ++ IV+DKRY
Sbjct: 380  VNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRY 439

Query: 1530 GALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAIT 1709
            GAL+TLGERKQAFNEYLGQRKK EAEERR RQKKA+EEF KMLEE E L+SS+KWSKA++
Sbjct: 440  GALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSLKWSKAMS 499

Query: 1710 LFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEAN 1889
            LFE+D+RFKAV++P+DR++LF+NY+V                    Y KFLE+CD+I+A 
Sbjct: 500  LFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMADYRKFLETCDYIKAG 559

Query: 1890 SLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDE 2069
            + WRK+QDRLEDDD CS LEK++RL  F++YI                  RRAERKNRD 
Sbjct: 560  TQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEKEHVRRAERKNRDA 619

Query: 2070 FRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQY 2249
            FR +LE  VAAG+LTAKT W +YC ++K+   Y AVA NTSGSTPKDLFEDV +ELE QY
Sbjct: 620  FRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFEDVTEELEKQY 679

Query: 2250 HDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXX 2429
            H+DKS VKDAMK  KI+M SSW FE+FK +I ++L +  ISDINLKL++           
Sbjct: 680  HEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEKE 739

Query: 2430 XXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYV 2609
                   QRL ++FT+LL +FKEIT +S WEDSKQ +E+S+EYR IG+E++++  FE+Y+
Sbjct: 740  EKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEYI 799

Query: 2610 VHLQ 2621
              LQ
Sbjct: 800  TSLQ 803



 Score = 67.8 bits (164), Expect = 3e-08
 Identities = 30/49 (61%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
 Frame = +3

Query: 2958 DEVGSDRDDKEEYKKS-RRHGSDRKKSRKHEYSPDSDGESRHKRHKRDN 3101
            ++V SDRDD++E KKS R+HG+DRKKSRKH  SP+S+ E+RHKR K+++
Sbjct: 894  EDVSSDRDDRDESKKSSRKHGNDRKKSRKHANSPESESENRHKRQKKES 942


>dbj|BAH19565.1| AT1G44910 [Arabidopsis thaliana]
          Length = 826

 Score =  687 bits (1772), Expect = 0.0
 Identities = 394/844 (46%), Positives = 506/844 (59%), Gaps = 13/844 (1%)
 Frame = +3

Query: 129  PQNFGPPVPSQFRPAVPGQQGQPYLHGSSPQFPPAGQNMPSGPNQPIRPNQPMQFSXXXX 308
            PQ+ G    +QFRP VPGQQGQ ++  +S  F P G   P+  +QP + +QP+Q      
Sbjct: 6    PQSSG----TQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQ--QQQL 59

Query: 309  XXXXXXXXXXXXXXXXXXXXXYGQPNRPMTLGAQQNQHSAPPYNNHSGVGGMGAPFSSSY 488
                                 Y Q N+ +T G+ Q Q +APP    +G    G PFSS Y
Sbjct: 60   FPVRPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPM---TGFATSGPPFSSPY 116

Query: 489  TFQQGSHLNTPQAPNXXXXXXXXXXXXXXXXXXXXXXVNQPTVSAAPV-------PVINP 647
            TF   S+                              VNQ T   +PV       PV   
Sbjct: 117  TFVPSSYPQQQPTSLVQPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQQTGQQTPVAVS 176

Query: 648  ADSNQL---SSSDWQEHTTPDGRRYYYNKKTKQSSWEKPSELMTPMERADASTVWKEFTT 818
             D   L   S+SDWQEHT+ DGR+YYYNK+TKQS+WEKP ELMTP+ERADASTVWKEFTT
Sbjct: 177  TDPGNLTPQSASDWQEHTSADGRKYYYNKRTKQSNWEKPLELMTPLERADASTVWKEFTT 236

Query: 819  PEGKKYYYNKVTKESKWSIPEELKLAREQAEKAAQAVGHVVQIDTGINTQPAAAGSSTSG 998
            PEGKKYYYNKVTKESKW+IPE+LKLAREQA+ A++             T  + AGS+   
Sbjct: 237  PEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASE------------KTSLSEAGSTPLS 284

Query: 999  ELPASAXXXXXXXXXXXXXXXXXXXXXIPPIVNQSLAVNGASSETSVGHSVSQTSKDITN 1178
               AS+                         V+   +V  ++S    GHS S     +  
Sbjct: 285  HHAASSSDL---------------------AVSTVTSVVPSTSSALTGHSSSPIQAGLA- 322

Query: 1179 SPAVTTPLSASTSGDAGLPAASSASSTIVNASDRLPSQEISNTTNGALVQDAAESREGVV 1358
             P    P  A  +  +G  A S   +T +   D L S+   ++ +GA  Q+     + + 
Sbjct: 323  VPVTRPPSVAPVTPTSG--AISDTEATTIK-GDNLSSRGADDSNDGATAQNNEAENKEMS 379

Query: 1359 VAGKVDLV---EKPTDDEPLVFATKQEAKSAFKLLLESANVQSDWNWDQAMRVIVNDKRY 1529
            V GK +L    +K   +EP+V+ATKQEAK+AFK LLES NV SDW W+Q ++ IV+DKRY
Sbjct: 380  VNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRY 439

Query: 1530 GALKTLGERKQAFNEYLGQRKKQEAEERRMRQKKAKEEFTKMLEESEVLTSSMKWSKAIT 1709
            GAL+TLGERKQAFNEYLGQRKK EAEERR RQKKA+EEF KMLEE E L+SS+KWSKA++
Sbjct: 440  GALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEELSSSLKWSKAMS 499

Query: 1710 LFEDDERFKAVEKPKDRQELFENYLVXXXXXXXXXXXXXXXXXXXXYWKFLESCDFIEAN 1889
            LFE+D+RFKAV++P+DR++LF+NY+V                    Y KFLE+CD+I+A 
Sbjct: 500  LFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMADYRKFLETCDYIKAG 559

Query: 1890 SLWRKVQDRLEDDDSCSRLEKLERLEIFQDYIRYXXXXXXXXXXXXXXXXRRAERKNRDE 2069
            + WRK+QDRLEDDD CS LEK++RL  F++YI                  RRAERKNRD 
Sbjct: 560  TQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEKEHVRRAERKNRDA 619

Query: 2070 FRNMLEADVAAGVLTAKTSWREYCGKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQY 2249
            FR +LE  VAAG+LTAKT W +YC ++K+   Y AVA NTSGSTPKDLFEDV +ELE QY
Sbjct: 620  FRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFEDVTEELEKQY 679

Query: 2250 HDDKSRVKDAMKLCKITMTSSWTFEEFKESILQELGSPPISDINLKLVFXXXXXXXXXXX 2429
            H+DKS VKDAMK  KI+M SSW FE+FK +I ++L +  ISDINLKL++           
Sbjct: 680  HEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEKE 739

Query: 2430 XXXXXXRQRLTDDFTDLLRSFKEITASSTWEDSKQFIEDSEEYREIGNETLARETFEDYV 2609
                   QRL ++FT+LL +FKEIT +S WEDSKQ +E+S+EYR IG+E++++  FE+Y+
Sbjct: 740  EKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEYI 799

Query: 2610 VHLQ 2621
              LQ
Sbjct: 800  TSLQ 803