BLASTX nr result
ID: Achyranthes23_contig00017722
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00017722
(2261 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY10285.1| Uncharacterized protein TCM_025656 [Theobroma cacao] 129 5e-37
gb|EOX96724.1| Gag-pol polyprotein, putative [Theobroma cacao] 121 1e-34
gb|EOY18660.1| Uncharacterized protein TCM_043155 [Theobroma cacao] 122 4e-33
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 124 7e-33
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 114 1e-30
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 113 2e-30
gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum] 114 2e-30
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 108 1e-28
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 112 8e-27
ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803... 97 2e-26
ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624... 99 3e-25
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 85 8e-24
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 85 8e-24
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni... 97 1e-23
ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778... 105 6e-21
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 86 2e-20
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 80 5e-19
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group] 80 5e-19
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 79 5e-19
ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759... 81 9e-19
>gb|EOY10285.1| Uncharacterized protein TCM_025656 [Theobroma cacao]
Length = 505
Score = 129 bits (325), Expect(3) = 5e-37
Identities = 87/302 (28%), Positives = 148/302 (49%), Gaps = 21/302 (6%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+++ ++RKF+P +Y+Q +++ +++L Q M + +Y EFE+L + CD+ + EE R L
Sbjct: 1 MRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHMKCDVHEPEEQTVARYL 60
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYS------- 942
G GLN +I + ++ P D LA EKQR + + +
Sbjct: 61 G---GLNVEIADVVQLQPYWNLNDVIRLALKVEKQRSRKRSMSSSRQQESISNDESQSSV 117
Query: 943 -----------TT*A*QREEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEK-- 1083
T + +E + + + CFKC+G GH A DCPN R +S +E+
Sbjct: 118 TIPPPKVNSSKTASSNDKETTFTRASNVNKK--CFKCQGFGHIAFDCPNRRIISLVEEED 175
Query: 1084 -INTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN* 1260
N KL + + E++ +V++ +N + M K+E+
Sbjct: 176 YANWEKLEPVYDEYDDEEIEEVSADHGEALIVRRNLNTAM-------------MTKDESW 222
Query: 1261 QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQT 1440
R NIF ++C Q +VCN+I+D GS NV+ +V++L L+TE HP PYKL W+ + +
Sbjct: 223 LRHNIFYTRCTSQGKVCNVIIDSGSCENVIANYMVEKLKLQTEVHPHPYKLQWLRKGNEV 282
Query: 1441 QV 1446
+V
Sbjct: 283 KV 284
Score = 46.6 bits (109), Expect(3) = 5e-37
Identities = 18/31 (58%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = +3
Query: 1452 QCLVQFQIGS-YQDEIMCDVVQMDVCHMLLG 1541
+C VQF IG+ Y+DE+ CD++ MD CH+LLG
Sbjct: 287 RCCVQFSIGNKYEDEVWCDIIPMDACHLLLG 317
Score = 28.1 bits (61), Expect(3) = 5e-37
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQ+DR++ HDG K +
Sbjct: 316 LGRPWQYDRRAHHDGYKNTY 335
>gb|EOX96724.1| Gag-pol polyprotein, putative [Theobroma cacao]
Length = 794
Score = 121 bits (303), Expect(3) = 1e-34
Identities = 84/301 (27%), Positives = 146/301 (48%), Gaps = 19/301 (6%)
Frame = +1
Query: 601 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 780
++++ ++RKF+P +Y+Q +++ +++L Q M + +Y EFE+L + CD+ + EE R
Sbjct: 151 KMRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHMKCDVHEPEEQTVARY 210
Query: 781 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXF-----QGLYST 945
LG GLN I + ++ P D LA EKQ+ +G S+
Sbjct: 211 LG---GLNVGIADVVQLQPYWNLNDVIRLALKVEKQQLRKSSMSSSRQKDSTSNRGRQSS 267
Query: 946 T*A*QREEGY*SLV*MKSEVV---------CFKCRGRGHYARDCPNPRELSAMEKINTYK 1098
+ + K CFKC+G GH A DCPN R +S +E+ +
Sbjct: 268 ATIPPPKVNSSKTINHKETTSTRAPNVNKKCFKCQGFGHIASDCPNRRIISLIEEEVMEE 327
Query: 1099 LLILQLN*YGNIMS-----ELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*Q 1263
+ +++ I + E++ VV++ +N + + ++E+
Sbjct: 328 PSLEEVDDELEIFNNEEIEEVSADHGEALVVRRNLNTAM-------------LTEDESWL 374
Query: 1264 RTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQ 1443
R NIF ++C Q +VCN+I+D GS NV+ +V +L L+TE HP PYKL W+ + + +
Sbjct: 375 RHNIFHTRCTSQGKVCNVIIDSGSCENVIANYMVKKLKLQTEVHPHPYKLQWLRKGNEVK 434
Query: 1444 V 1446
V
Sbjct: 435 V 435
Score = 47.0 bits (110), Expect(3) = 1e-34
Identities = 19/31 (61%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = +3
Query: 1452 QCLVQFQIGS-YQDEIMCDVVQMDVCHMLLG 1541
+C VQF IG+ Y+DE+ CDV+ MD CH+LLG
Sbjct: 438 RCCVQFSIGNKYEDEVWCDVIPMDACHLLLG 468
Score = 28.1 bits (61), Expect(3) = 1e-34
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQ+DR++ HDG K +
Sbjct: 467 LGRPWQYDRRAHHDGYKNTY 486
>gb|EOY18660.1| Uncharacterized protein TCM_043155 [Theobroma cacao]
Length = 625
Score = 122 bits (307), Expect(3) = 4e-33
Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 21/303 (6%)
Frame = +1
Query: 601 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 780
++++ ++RKF+P +Y+Q +++ +++L Q M + +Y EFE+L + CD+ + EE R
Sbjct: 120 KMRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHMKCDVHEPEEQTLARY 179
Query: 781 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYS------ 942
LG GLN +I + ++ P D L EKQ+ + + +
Sbjct: 180 LG---GLNVEIADVVQLQPYWNLNDVIRLTLKVEKQQSRKRSMSSSRQQESISNDESQSS 236
Query: 943 ------------TT*A*QREEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEK- 1083
T + +E + + + CFKC+ GH A DCP+ R +S +E+
Sbjct: 237 VTIPPPKVNSSKTASSNDKETTFTRASNVNKK--CFKCQRFGHIASDCPSRRIISLVEEE 294
Query: 1084 --INTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN 1257
+N KL + + E++ +V++ +N + M K+E+
Sbjct: 295 DYVNWEKLEPVYDEYDDEEIEEVSADHGEAFIVRRNLNTAL-------------MTKDES 341
Query: 1258 *QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQ 1437
R NIF ++C Q VCN+I+D GS NVV +V++L L TE HP PYKL W+ + +
Sbjct: 342 CLRHNIFYTRCTSQGNVCNVIIDSGSCENVVANYMVEKLKLPTEVHPHPYKLQWLRKGNE 401
Query: 1438 TQV 1446
+V
Sbjct: 402 VKV 404
Score = 42.7 bits (99), Expect(3) = 4e-33
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +3
Query: 1452 QCLVQFQI-GSYQDEIMCDVVQMDVCHMLLG 1541
+C +QF I Y+DE+ CDV+ MD CH+LLG
Sbjct: 407 RCCIQFFIRNKYEDEVWCDVIPMDACHLLLG 437
Score = 25.8 bits (55), Expect(3) = 4e-33
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQ+DR++ +DG K +
Sbjct: 436 LGRPWQYDRRAHYDGYKNTY 455
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 124 bits (311), Expect(2) = 7e-33
Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 25/307 (8%)
Frame = +1
Query: 601 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 780
+LKK M KFV +Y Q L++ ++L Q + + Y++EFE+L + C+I + E +RI
Sbjct: 163 KLKKKMLAKFVTKDYTQDLFIKLSNLKQKEKTVEAYLREFEQLTLQCEINEKSE---QRI 219
Query: 781 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYS------ 942
F+ GL+ +I ++ P +Y D L+ EK YS
Sbjct: 220 ARFLEGLDKNIAAEVRMQPLWSYDDVVNLSLRVEKMGKTKPVATRPKPVFRPYSSVKIND 279
Query: 943 ---TT*A*QREEGY*SL------V*MKSEVVCFKCRGRGHYARDCPNPRELSAME----- 1080
TT ++G + + ++ CF+C+G GH+ +DCP+ R L+A+E
Sbjct: 280 PPKTTPQSTVDKGKAPMNPKINPPLSRDKIKCFQCQGFGHFRKDCPSARTLTAIEVAEWE 339
Query: 1081 -----KINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMA 1245
+ + L+L+ + SE +P Q+V S W ++ + A
Sbjct: 340 REGLVEYEEDEALVLE-----EVESEKETSP--DQIVAHPDTGHSLFLW---RVMHSQQA 389
Query: 1246 KEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWID 1425
E QR+ IF+S+C +Q VCNLI++GGS NV T +V +L L T+ HP PYKL W+
Sbjct: 390 PLEADQRSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLS 449
Query: 1426 EEKQTQV 1446
++ +V
Sbjct: 450 KDSGVRV 456
Score = 45.8 bits (107), Expect(2) = 7e-33
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +3
Query: 1452 QCLVQFQIGS-YQDEIMCDVV-QMDVCHMLLGVHGNLIGNPSMMGRNKNFKDHVQGVYSN 1625
QC++ F IG Y+DE++CDVV MD CH+LLG N + G++ + QG
Sbjct: 459 QCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPWEYDRNTTHQGKDNVYIFKHQGKKVT 518
Query: 1626 CEGIGYSSLNFGSNN--KHMLGLSYKS 1700
+ + ++GS N + M G+ + S
Sbjct: 519 LTPLPPNQRDYGSPNVPEEMSGVLFLS 545
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 114 bits (286), Expect(3) = 1e-30
Identities = 90/298 (30%), Positives = 137/298 (45%), Gaps = 17/298 (5%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+K+ MRR+FVPS Y + L+ L Q + +Y KE E L I ++++ +E R
Sbjct: 146 MKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMAR-- 203
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQ-RXXXXXXXXXXXF----------- 927
F+ GLN DI + +E H V + A E+Q + F
Sbjct: 204 -FLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRNSTTFNSQSWKDKTKK 262
Query: 928 QGLYSTT*A*QREEGY*-----SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEKINT 1092
+G S+ A +G S V V CFKC+G+GH A CP R + E
Sbjct: 263 EGASSSKEATVENKGKTITSSSSSVSTNKSVKCFKCQGQGHIASQCPTKRTMLMEEN--- 319
Query: 1093 YKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTN 1272
+++ + Y E P+ V + +L ++ +E+ QR N
Sbjct: 320 EEIVEEEDGDYDKEFGEEIPSGDLLMVRR---------------MLGSQIKEEDTSQREN 364
Query: 1273 IFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 1446
+F +C +Q +VC+LI+DGGS NV T LV RL L+T+ HP+PYKL W++E + V
Sbjct: 365 LFHIRCFVQGKVCSLIIDGGSCTNVASTRLVSRLKLETKPHPKPYKLQWLNESVEMLV 422
Score = 38.5 bits (88), Expect(3) = 1e-30
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
Q + F+IG Y+D ++CDVV M+ H+LLG
Sbjct: 425 QVEICFKIGKYEDVVLCDVVPMEASHLLLG 454
Score = 29.6 bits (65), Expect(3) = 1e-30
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQFDRK+ HDG ++
Sbjct: 453 LGRPWQFDRKANHDGYSNKY 472
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 113 bits (282), Expect(3) = 2e-30
Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 15/307 (4%)
Frame = +1
Query: 571 REKILSLLSPRLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIK 750
+E I S L +LKK + KF+P Y Q +++ L Q + L Y+++FE+L + C++
Sbjct: 153 KEPIKSWL--KLKKKLNEKFIPKEYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQCELN 210
Query: 751 DHEEMKTRRILGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQ 930
+ E K R F+ GL+ I ++ ++ + LA EK
Sbjct: 211 EKPEQKIAR---FVEGLDTKIAHRVRMQQVWSFDEAVNLALRVEKMGKGKATTTKPTTKP 267
Query: 931 GLY---------------STT*A*QREEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPRE 1065
+ TT + + S C++C+G GH+A++CP R
Sbjct: 268 ATFRPPTSFKINEPPSQNKTTILDKGKAAETSQKKTMPLKKCYQCQGYGHFAKECPTKRA 327
Query: 1066 LSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMA 1245
LS+ E ++ IL + E+ T + V S W ++ +
Sbjct: 328 LSSFEVVHWGDDEILVCD------EEVEGTDHEEDDVVMPDAGLSLVTW---RVMHTQPQ 378
Query: 1246 KEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWID 1425
E QR IF+S+C I+ VCNLI+DGGS NV + L+++L L T+ HP PYKL W++
Sbjct: 379 PLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLN 438
Query: 1426 EEKQTQV 1446
+ + +V
Sbjct: 439 KGAEVRV 445
Score = 46.2 bits (108), Expect(3) = 2e-30
Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +3
Query: 1452 QCLVQFQIG-SYQDEIMCDVVQMDVCHMLLG 1541
QCLV F IG +Y DE +CDV+ MD CH+LLG
Sbjct: 448 QCLVTFSIGKNYSDEALCDVLPMDACHLLLG 478
Score = 23.1 bits (48), Expect(3) = 2e-30
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDG 1579
+G W+FDR S H G
Sbjct: 477 LGRPWEFDRDSVHHG 491
>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 572
Score = 114 bits (284), Expect(3) = 2e-30
Identities = 89/298 (29%), Positives = 137/298 (45%), Gaps = 17/298 (5%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+K+ MRR+FVPS Y + L+ L Q + +Y KE E L I ++++ +E R
Sbjct: 146 MKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMAR-- 203
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQ-RXXXXXXXXXXXF----------- 927
F+ GLN DI + +E H V + A E+Q + F
Sbjct: 204 -FLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRNSTTFNSQSWKDKTKK 262
Query: 928 QGLYSTT*A*QREEGY*-----SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEKINT 1092
+G S+ A +G S V V CFKC+G+GH A CP R + E
Sbjct: 263 EGASSSKEATVENKGKTITSSSSSVSTNKSVKCFKCQGQGHIASQCPTKRTMLMEENEG- 321
Query: 1093 YKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTN 1272
++ + Y E P+ V + +L ++ +E+ QR N
Sbjct: 322 --IVEEEDGDYDEEFEEEIPSGDLLMVRR---------------MLGSQIKEEDTGQREN 364
Query: 1273 IFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 1446
+F ++C +Q +VC+LI+DGGS NV T LV +L L+T+ HP+PYKL W++E + V
Sbjct: 365 LFHTRCFVQGKVCSLIIDGGSCTNVASTRLVSKLKLETKPHPKPYKLQWLNESVEMLV 422
Score = 38.5 bits (88), Expect(3) = 2e-30
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
Q + F+IG Y+D ++CDVV M+ H+LLG
Sbjct: 425 QVEICFKIGKYEDVVLCDVVPMEASHLLLG 454
Score = 29.6 bits (65), Expect(3) = 2e-30
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQFDRK+ HDG ++
Sbjct: 453 LGRPWQFDRKANHDGYSNKY 472
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 108 bits (270), Expect(3) = 1e-28
Identities = 91/319 (28%), Positives = 140/319 (43%), Gaps = 34/319 (10%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
LK+ MRRKFVPSN+ + + L Q + ++ KE E+L +I++ +E RIL
Sbjct: 159 LKREMRRKFVPSNFYRDMRRKLQELKQGSKSVREFYKEMERLKARANIQEDDETTIARIL 218
Query: 784 GFICGLNDDIKE------------------KLETHPNVTYGDGC*LAAIYEKQRXXXXXX 909
G N DI+ K+E G L++ +++ R
Sbjct: 219 E---GFNRDIRRELRNQEFDDVDKLVRVASKVEDELRSERGSKPSLSSQWDQPRRATNNS 275
Query: 910 XXXXXFQGLYSTT*A*QRE------------EGY*SLV*MKSEVVCFKCRGRGHYARDCP 1053
Q YS Q E EG V S V C++C+GRGHYAR+CP
Sbjct: 276 YQSRT-QKEYSRPSHTQEEKKNNQREKEKFQEGSKQKV---STVTCYRCQGRGHYARECP 331
Query: 1054 NPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*G---- 1221
N +++ K + + + EL P RQ+ E V
Sbjct: 332 NTKKILTTGKDEREYMSANESD-----DEELEPIGERQKDDHSEEEVQEDDALHFNCVVH 386
Query: 1222 NLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQ 1401
LS + ++ QR NIF KC I C+ I+DGGS NV+ ++V+ + + T +HPQ
Sbjct: 387 KALSTLVVLDQEEQRENIFYGKCKIPGATCSFIIDGGSCTNVISEDVVNAMKIPTIQHPQ 446
Query: 1402 PYKLNWIDEEKQTQVYDNA 1458
PYKL W++++ + +V+ A
Sbjct: 447 PYKLQWLNDDGELKVHKQA 465
Score = 44.7 bits (104), Expect(3) = 1e-28
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
Q L+ IG YQD+++CDV+ M CH+LLG
Sbjct: 464 QALISISIGKYQDDVLCDVIPMHACHILLG 493
Score = 22.7 bits (47), Expect(3) = 1e-28
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQ+DR + H G ++
Sbjct: 492 LGRPWQYDRDTLHHGKTNKY 511
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 112 bits (281), Expect(2) = 8e-27
Identities = 87/300 (29%), Positives = 135/300 (45%), Gaps = 18/300 (6%)
Frame = +1
Query: 601 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 780
+LK M+R+FVPS+Y + L+ +L Q + +Y KE E L++ D+++ E R
Sbjct: 131 QLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSRF 190
Query: 781 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYSTT*A*Q 960
+G GLN DI ++ E + A ++EKQ + Y
Sbjct: 191 MG---GLNRDILDRFEVIHYENLEELFHKAVMFEKQIKRRSAKPSYNSSKPSYQREEKSG 247
Query: 961 REEGY*SLV*MKSEVV----------------CFKCRGRGHYARDCPNPRELSAMEKINT 1092
++ Y V K E + CFKC G GHYA +C N R
Sbjct: 248 FQKEYKPFVKPKVEEISSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKR---------- 297
Query: 1093 YKLLILQLN*YGNIMSELAPTPIR--QQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QR 1266
I+ + G + SE ++ K E+ V+ + +LS EE QR
Sbjct: 298 ----IMIIRDSGEVESEDEKPEESDVEEAPKGELLVTMR-------VLSVLNKAEEQAQR 346
Query: 1267 TNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 1446
N+F ++C I+ +VC+LI+DGGS NV +V +L L+ HP+PYKL W++E + V
Sbjct: 347 ENLFHTRCLIKGKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAV 406
Score = 37.0 bits (84), Expect(2) = 8e-27
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
Q V IG Y+DEI+CD++ ++ H+LLG
Sbjct: 409 QVQVPLAIGKYEDEILCDILPLEASHVLLG 438
>ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803456 [Glycine max]
Length = 732
Score = 97.4 bits (241), Expect(3) = 2e-26
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +1
Query: 1000 EVVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPT-PIRQQVV 1176
++ CFKC GRGH A +CP T K++IL+ + G I SE +P+ P ++
Sbjct: 169 DIKCFKCLGRGHIASECP------------TKKVMILKDD--GEITSENSPSEPSSEEER 214
Query: 1177 KKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCT 1356
E + + +L K E QR NIF + C IQ VC+LI+DGGS NVV
Sbjct: 215 ALEEEIPEGDLFIVRRILGGIAKKSEESQRENIFHTTCLIQGRVCSLIIDGGSCTNVVSA 274
Query: 1357 ELVDRLCLKTERHPQPYKLNWIDEEKQTQV 1446
LV ++ L+T+ HP+PYKL W+ EE + +V
Sbjct: 275 RLVKKMNLETKPHPRPYKLQWLSEEGELRV 304
Score = 40.0 bits (92), Expect(3) = 2e-26
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
Q +QF IG Y+D+ +CDVV M+ H+LLG
Sbjct: 307 QVEIQFSIGKYKDKTLCDVVPMEASHVLLG 336
Score = 31.2 bits (69), Expect(3) = 2e-26
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQFDRK+ HDG K ++
Sbjct: 335 LGRPWQFDRKAHHDGHKNKY 354
>ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
Length = 1083
Score = 98.6 bits (244), Expect(3) = 3e-25
Identities = 84/307 (27%), Positives = 134/307 (43%), Gaps = 26/307 (8%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+K MRR+FVPS+Y + L+ SL Q + DY KE E ++I +I++ E R
Sbjct: 1 MKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMAR-- 58
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYSTT*A*Q- 960
F+ GLN DI + V D +A E+Q + + +
Sbjct: 59 -FLHGLNQDIANVVYLQHYVELKDMVHMAMKVERQLKKKGSTRTNLGSSSSWKSKWSKDE 117
Query: 961 --------------REEGY*SLV*MKSE------VVCFKCRGRGHYARDCPNPRELSAME 1080
+E G S S+ + CFKC G H A CPN R + +
Sbjct: 118 KVVSKPKIEPIKDHKEGGNQSKGKSDSQHSRNRDIKCFKCLGTCHIASQCPNKRAMILRD 177
Query: 1081 KINTYKLLILQLN*YGNIMSELAPT-----PIRQQVVKKEINVSSK*PWF*GNLLS*KMA 1245
G++ +E P+ E ++ K L+ ++
Sbjct: 178 D--------------GDVETESESDDDPMPPLEDANDGVEYSIDGK-LMVARRALNTQVK 222
Query: 1246 KEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWID 1425
++ QR NIF ++C I+D+VC++I+DGGS NV T LV++L LKT +H + YKL W++
Sbjct: 223 EDAEVQRDNIFHTRCHIKDKVCSMIIDGGSCTNVAITSLVEKLNLKTLKHSRLYKLQWLN 282
Query: 1426 EEKQTQV 1446
+ + +V
Sbjct: 283 DYGEVKV 289
Score = 40.8 bits (94), Expect(3) = 3e-25
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
Q LV F IG Y+D+++CDVV M H+LLG
Sbjct: 292 QVLVSFSIGRYKDDVLCDVVPMHAGHILLG 321
Score = 25.0 bits (53), Expect(3) = 3e-25
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDG 1579
+G WQ+DR+ HDG
Sbjct: 320 LGRPWQYDRRVTHDG 334
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 84.7 bits (208), Expect(3) = 8e-24
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 25/306 (8%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+K+ MR++F+PS +Q+ L L Q M + +Y K + +I + + EE R
Sbjct: 191 MKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIAR-- 248
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQ------------RXXXXXXXXXXXF 927
F+ GLN +I +E VT + L+ EKQ R
Sbjct: 249 -FLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNTISKKPWSTQ 307
Query: 928 QGLYSTT*A*QREEGY*SLV*M---------KSEVVCFKCRGRGHYARDCPNPRELSAME 1080
+G + R +G S + C KC GRGH +CP+ R + E
Sbjct: 308 EGKAPSKPQDDRGKGKVEKGGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRE 367
Query: 1081 KINTYKLLILQLN*YGNIMSELAPTPIRQ-QVVKKEINVSSK*PWF*G---NLLS*KMAK 1248
G SE + + + V +E ++ G +++ +
Sbjct: 368 N--------------GEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGS 413
Query: 1249 EEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDE 1428
+ QR N+F ++C I+ + ++I+DGGS NVV + LVD+L + + PY+L W+++
Sbjct: 414 VDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLND 473
Query: 1429 EKQTQV 1446
+ QV
Sbjct: 474 CGEVQV 479
Score = 50.1 bits (118), Expect(3) = 8e-24
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
QC++ F +G Y+DEI+CDVV M CH+LLG
Sbjct: 482 QCMISFNVGRYEDEILCDVVPMQACHVLLG 511
Score = 25.0 bits (53), Expect(3) = 8e-24
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQ+DR + H G K +
Sbjct: 510 LGRPWQYDRDTTHHGRKNRY 529
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 84.7 bits (208), Expect(3) = 8e-24
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 25/306 (8%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+K+ MR++F+PS +Q+ L L Q M + +Y K + +I + + EE R
Sbjct: 191 MKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIAR-- 248
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQ------------RXXXXXXXXXXXF 927
F+ GLN +I +E VT + L+ EKQ R
Sbjct: 249 -FLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNTISKKPWSTQ 307
Query: 928 QGLYSTT*A*QREEGY*SLV*M---------KSEVVCFKCRGRGHYARDCPNPRELSAME 1080
+G + R +G S + C KC GRGH +CP+ R + E
Sbjct: 308 EGKAPSKPQDDRGKGKVEKGGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRE 367
Query: 1081 KINTYKLLILQLN*YGNIMSELAPTPIRQ-QVVKKEINVSSK*PWF*G---NLLS*KMAK 1248
G SE + + + V +E ++ G +++ +
Sbjct: 368 N--------------GEYESEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGS 413
Query: 1249 EEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDE 1428
+ QR N+F ++C I+ + ++I+DGGS NVV + LVD+L + + PY+L W+++
Sbjct: 414 VDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLND 473
Query: 1429 EKQTQV 1446
+ QV
Sbjct: 474 CGEVQV 479
Score = 50.1 bits (118), Expect(3) = 8e-24
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3
Query: 1452 QCLVQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
QC++ F +G Y+DEI+CDVV M CH+LLG
Sbjct: 482 QCMISFNVGRYEDEILCDVVPMQACHVLLG 511
Score = 25.0 bits (53), Expect(3) = 8e-24
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQ+DR + H G K +
Sbjct: 510 LGRPWQYDRDTTHHGRKNRY 529
>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1234
Score = 96.7 bits (239), Expect(3) = 1e-23
Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 12/303 (3%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
LK+ MR +FVPS Y + L L Q + +Y +E + ++ C++++ E+ R L
Sbjct: 224 LKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFL 283
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYSTT*A*QR 963
G GLN +I + ++ LA E++ G
Sbjct: 284 G---GLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAG---------- 330
Query: 964 EEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPR--------ELSAMEKINTYKLLILQLN 1119
+V C +C+G GH RDCP+ R E S+ + L +L +
Sbjct: 331 ---------RMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAAD 381
Query: 1120 *YGNIMSE----LAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSK 1287
N E A + ++ + + LS +M K E QR +FQ+K
Sbjct: 382 HADNEPPEEHIGAAFADHYESLIVQRV-------------LSAQMEKAEQNQRHTLFQTK 428
Query: 1288 CCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SN 1467
C +++ C +I+DGGS N+ +E+V++L L T+ HP PY + W++ + +V N
Sbjct: 429 CVVKERCCRMIIDGGSCKNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHIN 488
Query: 1468 FRL 1476
F +
Sbjct: 489 FAI 491
Score = 36.6 bits (83), Expect(3) = 1e-23
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1461 VQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
+ F IG+Y D + CDVV M C++LLG
Sbjct: 487 INFAIGNYHDVVECDVVPMQACNILLG 513
Score = 26.2 bits (56), Expect(3) = 1e-23
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQFDR S H G ++
Sbjct: 512 LGRPWQFDRDSMHHGRSNQY 531
>ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778333, partial [Glycine
max]
Length = 560
Score = 105 bits (262), Expect(2) = 6e-21
Identities = 81/309 (26%), Positives = 140/309 (45%), Gaps = 28/309 (9%)
Frame = +1
Query: 604 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 783
+K+ MR+++VP++Y +++ L Q + + +Y KE E ++ +I++ E R
Sbjct: 154 MKRVMRKRYVPTSYNRTMRQKLQELSQGNLTVEEYYKEMEMALVRANIEEDSEDTMAR-- 211
Query: 784 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXXFQGLYSTT*A*QR 963
F+ GLN I++ +E V D A E+Q Y+ A +
Sbjct: 212 -FLNGLNPAIRDVVELQEYVVLDDLLHRALRVEQQ--IKRKSATRRNSPNTYNQNWANRS 268
Query: 964 EEGY*SLV*MKSE----------------------------VVCFKCRGRGHYARDCPNP 1059
+EG S + + CFKC GRGH A +CP
Sbjct: 269 KEGGNSFRPAATSPHGKSATPSVGGSKHNTSTSSSNTGTRNIKCFKCLGRGHIASECP-- 326
Query: 1060 RELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*K 1239
T + +I++++ SE++ + ++ ++E LL +
Sbjct: 327 ----------TRRTMIMKVDGEITSESEISEEEVEEEEYEEEAMQGDM--LMVRRLLGNQ 374
Query: 1240 MAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNW 1419
M ++ QR NIF ++C I ++C+LIVDGGS NV + LV +L L+T+ HP PYKL W
Sbjct: 375 MQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETKPHPTPYKLQW 434
Query: 1420 IDEEKQTQV 1446
+ E+++ +V
Sbjct: 435 LSEDEEVKV 443
Score = 24.6 bits (52), Expect(2) = 6e-21
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDG 1579
+G WQ+D K+ HDG
Sbjct: 474 LGRPWQYDTKAVHDG 488
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 86.3 bits (212), Expect(3) = 2e-20
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Frame = +1
Query: 1000 EVVCFKCRGRGHYARDCPNPREL--------SAMEKINTYKLLILQLN*YGNIMSELAPT 1155
+V+C++C+G GH RDCPN R L S+ ++ L +L + G
Sbjct: 391 DVLCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGT------KE 444
Query: 1156 PIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGS 1335
P +Q+ + +LS +M K E QR +FQ+KC I++ C LI+DGGS
Sbjct: 445 PPEEQIGADDAEHYES--LIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDGGS 502
Query: 1336 EVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SNFRL 1476
N+ +++V++L L T+ HP PY + W++ + +V NF +
Sbjct: 503 CNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAI 549
Score = 40.0 bits (92), Expect(3) = 2e-20
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 1461 VQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
+ F IGSY+D + CDVV MD C++LLG
Sbjct: 545 INFAIGSYRDVVDCDVVPMDACNILLG 571
Score = 21.9 bits (45), Expect(3) = 2e-20
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAKQEF 1594
+G WQFD H G ++
Sbjct: 570 LGRPWQFDSDCMHHGRSNQY 589
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 80.5 bits (197), Expect(3) = 5e-19
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Frame = +1
Query: 1000 EVVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVK 1179
+V C +C+G GH RDCP+ R L ++ Y I + + ++ LA + +
Sbjct: 348 DVQCHRCKGFGHVQRDCPSKRVL-VVKNDGEYSSAI---DFDDDTLALLAADHADNEPPE 403
Query: 1180 KEINVSSK*PW---F*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVV 1350
+ I + + ++LS +M K E QR +FQ+KC +++ C +I+DGGS N+
Sbjct: 404 EHIGAAFADHYESLIMQHVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 463
Query: 1351 CTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SNFRL 1476
+E+V++L L T+ HP PY + W++ + +V NF +
Sbjct: 464 SSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAI 505
Score = 36.6 bits (83), Expect(3) = 5e-19
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1461 VQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
+ F IG+Y D + CDVV M C++LLG
Sbjct: 501 INFAIGNYHDVVECDVVPMQACNILLG 527
Score = 26.2 bits (56), Expect(3) = 5e-19
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAK 1585
+G WQFDR S H G K
Sbjct: 526 LGRPWQFDRDSMHHGKK 542
>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
Length = 1667
Score = 80.5 bits (197), Expect(3) = 5e-19
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Frame = +1
Query: 1000 EVVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVK 1179
+V C +C+G GH RDCP+ R L ++ Y I + + ++ LA + +
Sbjct: 348 DVQCHRCKGFGHVQRDCPSKRVL-VVKNDGEYSSAI---DFDDDTLALLAADHADNEPPE 403
Query: 1180 KEINVSSK*PW---F*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVV 1350
+ I + + ++LS +M K E QR +FQ+KC +++ C +I+DGGS N+
Sbjct: 404 EHIGAAFADHYESLIMQHVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 463
Query: 1351 CTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SNFRL 1476
+E+V++L L T+ HP PY + W++ + +V NF +
Sbjct: 464 SSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAI 505
Score = 36.6 bits (83), Expect(3) = 5e-19
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1461 VQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
+ F IG+Y D + CDVV M C++LLG
Sbjct: 501 INFAIGNYHDVVECDVVPMQACNILLG 527
Score = 26.2 bits (56), Expect(3) = 5e-19
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 1535 IGCSWQFDRKSKHDGAK 1585
+G WQFDR S H G K
Sbjct: 526 LGRPWQFDRDSMHHGKK 542
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 78.6 bits (192), Expect(3) = 5e-19
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Frame = +1
Query: 1000 EVVCFKCRGRGHYARDCPNPREL--------SAMEKINTYKLLILQLN*YGNIMSELAPT 1155
++ C +C+G GH +DCP+ R + S+ ++ +L N N AP
Sbjct: 396 DIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETYALLATN---NAREGDAPH 452
Query: 1156 PIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGS 1335
+ + + +LS +M + E QR +FQ+KC I++ C +I+DGGS
Sbjct: 453 QDEEHIGAEAAEHYES--LVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGS 510
Query: 1336 EVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 1446
N+ E+V++L L T+ HPQPY + W++ + +V
Sbjct: 511 CNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKV 547
Score = 40.0 bits (92), Expect(3) = 5e-19
Identities = 18/27 (66%), Positives = 18/27 (66%)
Frame = +3
Query: 1461 VQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
V F IGSY D I CDVV M C MLLG
Sbjct: 553 VHFAIGSYHDSINCDVVPMQACSMLLG 579
Score = 24.6 bits (52), Expect(3) = 5e-19
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 1526 SYAIGCSWQFDRKSKHDGAKQEF 1594
S +G WQFD+ S H G ++
Sbjct: 575 SMLLGRPWQFDKDSLHFGKSNQY 597
>ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759439 [Setaria italica]
Length = 696
Score = 81.3 bits (199), Expect(3) = 9e-19
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Frame = +1
Query: 1000 EVVCFKCRGRGHYARDCPNPR--------ELSAMEKINTYKLLILQLN*YGNIMSELAPT 1155
++ C +C+G GH +DCP+ R E S+ ++ +L N G E
Sbjct: 3 DIQCLRCKGYGHVRKDCPSARVLVVRPNGEYSSASDLDEETYALLAANNVGE--DEEHNK 60
Query: 1156 PIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGS 1335
+ + N S +LS +M K E QR +FQ+KC I++ C +I+DGGS
Sbjct: 61 NVEHIGTEHAENYESL---VVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRVIIDGGS 117
Query: 1336 EVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SNFRL 1476
N+ E+V++L L T+ HPQPY + W++ + +V NF +
Sbjct: 118 CNNLASAEMVEKLALCTQPHPQPYYIQWLNSSGKVKVTQLVRVNFAI 164
Score = 38.1 bits (87), Expect(3) = 9e-19
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +3
Query: 1461 VQFQIGSYQDEIMCDVVQMDVCHMLLG 1541
V F IGSY D I CDVV + C MLLG
Sbjct: 160 VNFAIGSYHDSIDCDVVPIQACSMLLG 186
Score = 23.1 bits (48), Expect(3) = 9e-19
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 1526 SYAIGCSWQFDRKSKHDGAKQEF 1594
S +G WQFD S H G ++
Sbjct: 182 SMLLGRPWQFDIDSLHHGKTNQY 204