BLASTX nr result
ID: Achyranthes23_contig00015799
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00015799
(3089 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 439 e-120
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 253 5e-64
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 247 3e-62
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 246 3e-62
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 239 4e-60
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 238 2e-59
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 238 2e-59
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 236 6e-59
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 227 2e-56
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 209 6e-51
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 204 2e-49
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 204 2e-49
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 204 2e-49
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 203 4e-49
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 202 6e-49
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 201 2e-48
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 198 1e-47
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 196 4e-47
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 195 1e-46
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 194 2e-46
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 439 bits (1130), Expect = e-120
Identities = 311/881 (35%), Positives = 407/881 (46%), Gaps = 116/881 (13%)
Frame = -2
Query: 2734 ENSSKGSVSDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTIDASKTWS 2555
+ SS + +G W ANKID G G E GGWSSWGSKKDQ+ PE D+SKT
Sbjct: 1109 DESSWDAFPSSGTGWNANKIDTGSGSAE-GGWSSWGSKKDQANPE--------DSSKT-- 1157
Query: 2554 ESILGKPSPAWGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEW-------------- 2417
GGWSS GSK+ + SK+G DA K W
Sbjct: 1158 -----------------GGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQ 1200
Query: 2416 -------ITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPS 2258
I+ + + GSGSAE GGW++ G KK +S+ E S +GG DASKSW SKP +PS
Sbjct: 1201 PVKATNDISIENDHGSGSAEGGGWANSGMKKDLSKQENSSTAGGWDASKSWSGSKPKDPS 1260
Query: 2257 PAWG---------------PVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKS 2123
AWG K +L QP+D++ N WGA+K
Sbjct: 1261 SAWGAGKKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASK- 1319
Query: 2122 WGGSNATEPASSWGKPAQE--------SSPVQNSENLEGPNSWNDKV-----------QP 2000
S + EP+S+WGKPAQE ++P ++SENLEG + WNDK+ QP
Sbjct: 1320 ---SKSKEPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENKSFSKQSQP 1376
Query: 1999 ASSKGWD--------SSKFN-EQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXX 1847
ASSK WD S+ F E+G K W+ + +STW Q GG++WK +E+
Sbjct: 1377 ASSKDWDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWKKNEQDEKDG 1436
Query: 1846 XXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKA----NKDGVSSS 1679
SS SW S + D + N++GVSS+
Sbjct: 1437 DPQGLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQGTLSSWGQPRDSSQKNNNENGVSSN 1496
Query: 1678 QGTQKMDKKPQSSSWGTQKEENKQQSSWGQ----------------KNNDXXXXXXXXSD 1547
Q K SW ++K+E+ QSSW Q K N+ +
Sbjct: 1497 FNRQGAGK-----SWDSKKKESNVQSSWAQQGDSTWKDSKEARSSVKANNSTNSGGWSTG 1551
Query: 1546 KTNKDGVSSSWGTQKTDK-KPQS-------------------SSWGAQKEENNQQSSWGQ 1427
K DGVSSSWG+QK D+ +P+S SSW A+K E QSSWGQ
Sbjct: 1552 KALVDGVSSSWGSQKEDRPQPKSNDRSVGDGNFDKDAKEEGLSSWDAKKVERKTQSSWGQ 1611
Query: 1426 PXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQ- 1250
P + N++ +SA W K++ S+ WGS+
Sbjct: 1612 PS---------------------------ESKNSAQSSADHWGSDKSNQPGKSSGWGSED 1644
Query: 1249 ----KQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKK------TESSWGQPKKTE 1100
K + Q SWG+S+ W G+K ++S WGQP +
Sbjct: 1645 TNAGKDSEKQDSWGKSN--------------VSTWKKESGEKLHGSDDSQSPWGQPGGSG 1690
Query: 1099 EDKASEEDSNNGWDSKKGERKTQSSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXX 920
+K E S GE K++ + Q+ N++
Sbjct: 1691 WNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQN--------------------------- 1723
Query: 919 XXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIML 740
+NRPP+ TA K MD F EE+DVL+EVES+M
Sbjct: 1724 --------------QNRPPR---GPNDDSPRVALTATRKRMDEFPTEEKDVLSEVESLMQ 1766
Query: 739 SMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRC 563
S+RRIMHQSG DG+ L +DQTY+I+N+LN+HPDKAAKIG GVDFITVKKHS F +RC
Sbjct: 1767 SIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQESRC 1826
Query: 562 FYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYFRK 440
FYVVSTDG+DTDFSYIKC++ FVKGKYPSVAESF+ KYFR+
Sbjct: 1827 FYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRR 1867
Score = 231 bits (590), Expect = 1e-57
Identities = 214/752 (28%), Positives = 299/752 (39%), Gaps = 126/752 (16%)
Frame = -2
Query: 3073 SPEQENKAVFEDIVDTCEDSEILGTAGGSSWDASLSAGNGWNTNKXXXXXXXXXXXXXXX 2894
SPEQENKAVFE+ ++ DS+I G A SSWDA S+G GWN NK
Sbjct: 1084 SPEQENKAVFEETLEIGVDSDITG-ADESSWDAFPSSGTGWNANKIDTGSGSAEGGWSSW 1142
Query: 2893 XSKQDQ--------------------PKPEDSSTAGGWGAKKEWN--------------- 2819
SK+DQ P+PEDSS +GGW A K W
Sbjct: 1143 GSKKDQANPEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPV 1202
Query: 2818 --TN----KSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSVSDAGKEWTA--------- 2684
TN ++D GSG + GGW++ G K SK ENSS DA K W+
Sbjct: 1203 KATNDISIENDHGSGSAEGGGWANSGMKKDLSKQENSSTAGGWDASKSWSGSKPKDPSSA 1262
Query: 2683 -----------------NKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTIDASKTWS 2555
+K D+ G EDGG S WG KKD QPE S ASK+ S
Sbjct: 1263 WGAGKKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASKSKS 1322
Query: 2554 ESILGKPSPAWGPPVKDG---GW---------------SSLGSKKAESQSEDSKAGAKDA 2429
+ +PS AWG P ++ GW S K + SK +
Sbjct: 1323 K----EPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENKSFSKQSQPAS 1378
Query: 2428 GKEWIT--NKKNGGSG-SAEDGGWSSWGSKKAVSQPEASF-KSGGKDASKSWGESKPGNP 2261
K+W + N G +G E G W VS ++++ ++GG K+ + K G+P
Sbjct: 1379 SKDWDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWKKNEQDEKDGDP 1438
Query: 2260 SPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAK------SWGGSNATE 2099
LP ++ W + + S G S
Sbjct: 1439 Q--------------------------GLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQG 1472
Query: 2098 PASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKNWESKKIEN 1919
SSWG+P ++SS N+EN SS FN QG K+W+SKK E+
Sbjct: 1473 TLSSWGQP-RDSSQKNNNEN------------------GVSSNFNRQGAGKSWDSKKKES 1513
Query: 1918 NTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXX 1739
N QS+WAQQG STWK+S+E +S W++
Sbjct: 1514 NVQSSWAQQGDSTWKDSKEAR------SSVKANNSTNSGGWST----------------- 1550
Query: 1738 XXXXXXXGLDKANKDGVSSSQGTQKMDK-KPQS-------------------SSWGTQKE 1619
KA DGVSSS G+QK D+ +P+S SSW +K
Sbjct: 1551 ---------GKALVDGVSSSWGSQKEDRPQPKSNDRSVGDGNFDKDAKEEGLSSWDAKKV 1601
Query: 1618 ENKQQSSWGQKNNDXXXXXXXXSDKTNKDGVSSSWGTQKTDKKPQSSSWGAQK----EEN 1451
E K QSSWGQ + K + + WG+ K+++ +SS WG++ +++
Sbjct: 1602 ERKTQSSWGQPSE----------SKNSAQSSADHWGSDKSNQPGKSSGWGSEDTNAGKDS 1651
Query: 1450 NQQSSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAG-----GWNVGKA 1286
+Q SWG+ + KKE +L ++S + G GWN +
Sbjct: 1652 EKQDSWGK---------------SNVSTWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQP 1696
Query: 1285 HGDVASNSWGSQK--QDKSQPSWGQSDNKNED 1196
G WGS + KS+ + Q+ N+N++
Sbjct: 1697 EG---GRGWGSSNTGEWKSRKNQNQNQNQNQN 1725
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 253 bits (645), Expect = 5e-64
Identities = 223/868 (25%), Positives = 343/868 (39%), Gaps = 47/868 (5%)
Frame = -2
Query: 2884 QDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSVSD 2705
++ P+ + ST+ GW +K++ WS W S+ + E + + S
Sbjct: 1297 EENPEVLNGSTSNGWDVSSNQTQSKTNE---------WSGWASSNKDGRSETAQENS--- 1344
Query: 2704 AGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTIDASKTWSESILGKPSPA 2525
W +++D S+ A + T D +KT
Sbjct: 1345 ---------------------WGKTVNQEDSSKSNAWNTSTTADQTKT------------ 1371
Query: 2524 WGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKE--WITNKKNGGSGSAEDGGWSSWGS 2351
K WS GS K+E + SKA +D+ K W T+ + + + WS+WGS
Sbjct: 1372 -----KSNEWSDWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQT-KTKSKEWSAWGS 1425
Query: 2350 KKAVSQPEASFKSGGKDASKS--WGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXN 2177
K+ P K+ +D+SKS W S + +
Sbjct: 1426 NKS-EIPACGSKAVQEDSSKSNTWNTSTTADQTK-------------------------- 1458
Query: 2176 LPQPDDTSKANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKVQPA 1997
+K+N+W A WG SN +E + K QE S N+ N + K +
Sbjct: 1459 -------TKSNEWSA---WG-SNKSEIPAGGSKAVQEDSSKSNAWN-RSTTADQTKTKSN 1506
Query: 1996 SSKGWDSSKFN-EQGGTKNWESKKIENNTQSTWAQQGGSTWKNSE----EVNXXXXXXXX 1832
W S+K GG+K + ++N +T + K++E N
Sbjct: 1507 EWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTKTKSNEWSAWGSNKSEIPAGG 1566
Query: 1831 XXXXGEDSSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKK 1652
EDSS++WN+ ++ +NK + + K
Sbjct: 1567 SKAVQEDSSKAWNTSTTADQTKTKSNEWSARV----------SNKSEIPAGGS-----KA 1611
Query: 1651 PQSSSWGTQK-------EENKQQSSWG-----QKNNDXXXXXXXXSDKTNKDGVSSSWGT 1508
Q SWG+ K E+N + +W Q ++ D T +D V SWG+
Sbjct: 1612 VQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSNEWSGWGKKKDVTQEDNVQHSWGS 1671
Query: 1507 QKT-DKKPQ-----SSSWGAQKEE-----NNQQSSWGQPXXXXXXXXXXXXXXXXGESHK 1361
K DK Q S WGA + + +++ SSWG+
Sbjct: 1672 GKRKDKVTQEDNSGSGDWGANRTDLAITKSSEWSSWGK---------------------- 1709
Query: 1360 KEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXX 1181
+KTE+ +++ W +GK + NS + S +W + NK E
Sbjct: 1710 --NKTEIPAGGSANVQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWVR--NKAETIDGGS 1765
Query: 1180 XXXXXXGWDS----FKGKKTESSWGQPKKTEE------DKASEEDSNNGWDSK----KGE 1043
W+S + K ++WG+PK +E +++++ S+ GW+S E
Sbjct: 1766 EKPQEDAWNSGNWKAESKVGNTTWGKPKSSESHAWDSHNQSNQNSSSQGWESHIASANSE 1825
Query: 1042 RKTQSSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPP 863
+ WG+ + RNRPP
Sbjct: 1826 NEKGFQWGKGRDSFKKN---------------------RFEGSQGRGSNAGDWKNRNRPP 1864
Query: 862 KLXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPA 683
+ A G+ +DI+S+EEQDVL ++E IM S+RRIM Q G +DGD L A
Sbjct: 1865 R---------------APGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGDPLAA 1909
Query: 682 EDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCL 506
EDQ +V+ENV HHPDK K+G G+D++ V KHS F +RCFYVV DGQ DFSY KCL
Sbjct: 1910 EDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCL 1969
Query: 505 QHFVKGKYPSVAESFSQKYFRKPRSEGN 422
+++ KYP +AESF KYFRKPR+ G+
Sbjct: 1970 ANYISKKYPDLAESFLGKYFRKPRARGD 1997
Score = 102 bits (254), Expect = 1e-18
Identities = 153/701 (21%), Positives = 250/701 (35%), Gaps = 76/701 (10%)
Frame = -2
Query: 3073 SPEQEN--KAVFEDIVDTCEDSEILGTAGGSSWDAS-------LSAGNGWNTNKXXXXXX 2921
SP+ + +AVFE E+ E+L + + WD S + +GW ++
Sbjct: 1285 SPQHNSGFEAVFE------ENPEVLNGSTSNGWDVSSNQTQSKTNEWSGWASSNKDGRSE 1338
Query: 2920 XXXXXXXXXXSKQDQPKPEDSSTAGGWGAK-------------KEWNTNKSDMGSG---- 2792
Q EDSS + W +W +NKS++ +G
Sbjct: 1339 TAQENSWGKTVNQ-----EDSSKSNAWNTSTTADQTKTKSNEWSDWGSNKSEIPAGGSKA 1393
Query: 2791 LEQDGG--------------------WSSWGSNKAQSKPENSSKGSVSDAGKEWTAN-KI 2675
+++D WS+WGSNK++ P SK D+ K T N
Sbjct: 1394 VQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEI-PACGSKAVQEDSSKSNTWNTST 1452
Query: 2674 DMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTIDASKT--WSESILGKPSPAWGPPVKDG 2501
T+ WS+WGS K + P +KA D+SK+ W+ S + A K
Sbjct: 1453 TADQTKTKSNEWSAWGSNKSEI-PAGGSKAVQEDSSKSNAWNRS-----TTADQTKTKSN 1506
Query: 2500 GWSSLGSKKAESQSEDSKAGAKDAGKE--WITNKKNGGSGSAEDGGWSSWGSKKAVSQPE 2327
WS+ GS K+E + SKA +D+ K W T+ + WS+WGS K+ P
Sbjct: 1507 EWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTS-TTADQTKTKSNEWSAWGSNKS-EIPA 1564
Query: 2326 ASFKSGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKA 2147
K+ +D+SK+W S + + +K+
Sbjct: 1565 GGSKAVQEDSSKAWNTSTTADQT---------------------------------KTKS 1591
Query: 2146 NQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKF 1967
N+W A SN +E + K QE +SW A D+S+
Sbjct: 1592 NEWSARV----SNKSEIPAGGSKAVQE-------------DSWGSSKWKADVAQEDNSRL 1634
Query: 1966 NEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQ-SWNS 1790
W++ + + W S W ++V ED+ Q SW S
Sbjct: 1635 GA------WDANAADQTKSNEW-----SGWGKKKDVT------------QEDNVQHSWGS 1671
Query: 1789 RKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWGTQKEE-- 1616
K++++ D + +++ + K + SSWG K E
Sbjct: 1672 GKRKDKVTQE----------------DNSGSGDWGANRTDLAITKSSEWSSWGKNKTEIP 1715
Query: 1615 -----NKQQSSWG-QKNNDXXXXXXXXSDKTNKDGVSSSWGTQKTD------KKPQSSSW 1472
N Q SWG K ND G S+W K + +KPQ +W
Sbjct: 1716 AGGSANVQNDSWGLGKLNDTQKDNSGCGAWGENSG--SAWVRNKAETIDGGSEKPQEDAW 1773
Query: 1471 GA---QKEENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGW 1301
+ + E ++WG+P ESH + + +N ++S+ GW
Sbjct: 1774 NSGNWKAESKVGNTTWGKP--------------KSSESHAWDSHNQ----SNQNSSSQGW 1815
Query: 1300 --NVGKAHGDVASN-SWG----SQKQDKSQPSWGQSDNKNE 1199
++ A+ + WG S K+++ + S G+ N +
Sbjct: 1816 ESHIASANSENEKGFQWGKGRDSFKKNRFEGSQGRGSNAGD 1856
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 247 bits (630), Expect = 3e-62
Identities = 240/927 (25%), Positives = 365/927 (39%), Gaps = 43/927 (4%)
Frame = -2
Query: 3073 SPEQEN--KAVFEDIVDTCEDSEILGTAGGSSWDASLSAG-------NGW-NTNKXXXXX 2924
SP+ + +AVFE E+ E+L + + WD S + G +GW ++NK
Sbjct: 1285 SPQHNSGFEAVFE------ENPEVLNGSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKD 1338
Query: 2923 XXXXXXXXXXXSKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQ 2744
K EDSS + W + K+ + WS+WGSNK
Sbjct: 1339 GRSEIAPKNSWGKT--VNQEDSSKSNPWSTSTIADQTKT-------KSNEWSAWGSNK-- 1387
Query: 2743 SKPENSSKGSVSDAGKEW-TANKIDMGPGLTEDGGWSSWG---SKKDQSQPEASTKAGTI 2576
S+ W ++NK ++ G +E +SWG +++D S+ A + T+
Sbjct: 1388 -----------SEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTV 1436
Query: 2575 DASKTWSESILGKPS-----PAWGPP-VKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWI 2414
D + T S S PA G V++ W S K +Q ++S+ GA DA
Sbjct: 1437 DHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDAN---- 1492
Query: 2413 TNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPSPAWGPVKX 2234
+ + WS WG KK V+Q + S + G DA+ + + WG K
Sbjct: 1493 ------AADQTKSSEWSGWGKKKDVTQEDNS-RLGAWDANAA--DQTKSRDWSGWGKKKD 1543
Query: 2233 XXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPASSWGKPAQESSPV 2054
+D S+ W A + + S WGK ++ +
Sbjct: 1544 ITQ--------------------EDNSRLGAWDANAA--DQTKSSEWSGWGKK-KDVTQE 1580
Query: 2053 QNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKN---WESKKIENNTQSTWAQQGGS 1883
NS + D+ + GW K Q W++ + + W S
Sbjct: 1581 DNSRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSRLGAWDANTADQTKSNEW-----S 1635
Query: 1882 TWKNSEEVNXXXXXXXXXXXXGEDSSQ--SWNSRKKENRXXXXXXXXXXXXXXXXXXGLD 1709
W +EV ED+S+ +W++ ++
Sbjct: 1636 GWGKKKEVTQ------------EDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSR 1683
Query: 1708 KANKDGVSSSQGTQKMDKKPQSSSWGTQKE---ENKQQSSWGQKNNDXXXXXXXXSDKTN 1538
D ++ Q K + S WG +KE E+ Q SWG DK
Sbjct: 1684 LGAWDANAADQ-----TKSNEWSDWGKKKEVTQEDNVQDSWGSGKRK---------DKVT 1729
Query: 1537 KDGVSSS--WGTQKTD-KKPQSSSWGAQKEENNQQSSWGQPXXXXXXXXXXXXXXXXGES 1367
++ S S WG +TD K +SS W SSWG+
Sbjct: 1730 QEDNSGSGGWGANRTDLAKSKSSEW----------SSWGK-------------------- 1759
Query: 1366 HKKEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQ-KQDKSQPSWGQSDNKNEDXX 1190
+K+E+ + + W GK D + GS ++K++ G S+ ED
Sbjct: 1760 ----NKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAW 1815
Query: 1189 XXXXXXXXXGWDSFKGKKTESSWGQPKKTEE------DKASEEDSNNGWDSKKGERKTQS 1028
W + + K +SWG+PK +E +++++ S+ GW+S ++S
Sbjct: 1816 NSGN------WKA-ESKVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIASANSES 1868
Query: 1027 S----WGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPK 860
WG+ + RNRPP+
Sbjct: 1869 EKGFQWGKQGRDSFK--------------------KNRFEGSQGRGSNAGDWKNRNRPPR 1908
Query: 859 LXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAE 680
A G+ +DI+S+ EQDVL ++E IM S+RRIM Q G NDGD L AE
Sbjct: 1909 ---------------APGQRLDIYSSGEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAAE 1953
Query: 679 DQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQ 503
DQ +V+ENV HHPDK K+G G+D++ V KHS F +RCFYVV DG+ DFSY KCL
Sbjct: 1954 DQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYVVCKDGESKDFSYRKCLA 2013
Query: 502 HFVKGKYPSVAESFSQKYFRKPRSEGN 422
+++ KYP +AESF KYFRKPR+ G+
Sbjct: 2014 NYISKKYPDLAESFLGKYFRKPRARGD 2040
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 246 bits (629), Expect = 3e-62
Identities = 243/874 (27%), Positives = 340/874 (38%), Gaps = 63/874 (7%)
Frame = -2
Query: 2866 EDSSTAGGWGAKKEWNTNKSDMG---SGLEQDGG----WSSWGSNKAQSK--PENSSKGS 2714
+DSS +G W A N ++ G SG++ DG W S S K ++ ENSSK
Sbjct: 1410 KDSSKSGAWEASTNQNNDQPSWGRNKSGVQDDGAVKTQWESGSSQKWKTDVIQENSSKSG 1469
Query: 2713 VSDAGKEWTANKIDMGP---GLTEDGG----WSSWGSKKDQSQ--PEASTKAGTIDASKT 2561
+A +++ G G+ +DG W S S+K ++ E S+K+G +A+
Sbjct: 1470 AWEANTNKNSDQPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKSGAWEANTN 1529
Query: 2560 WSESILGKPSPAWGPP---VKDGG-----WSSLGSKKAES---QSEDSKAGAKDAGKE-- 2420
+ P+WG ++D G W S S+K ++ Q + SK GA +A
Sbjct: 1530 KNSD-----PPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKPGAWEANTNKN 1584
Query: 2419 -----WITNKKNGGSGSAEDGGWSSWGSKK--AVSQPEASFKSGGKDASKSWGESKPGNP 2261
W NK +G AE W S S+K A E S KSG SWG + N
Sbjct: 1585 SDQPSWGKNK-SGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSG------SWGANTNQNS 1637
Query: 2260 S-PAWGPVKXXXXXXXXXXXXXXXXXXXNLPQ--PDDTSKANQWGAAKSWGGSNATEPAS 2090
P+WG K +D+SK+ WGA +N
Sbjct: 1638 DQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGA-----NTNQNSDQP 1692
Query: 2089 SWGKPAQESSPVQNSENLEGPNSWNDKVQ--PASSKGWDSSKFNEQGGTK-NWESKKIEN 1919
SWGK N G +K Q SS+ W + E +W + +N
Sbjct: 1693 SWGK------------NKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQN 1740
Query: 1918 NTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXG--EDSSQS--WNSRKKENRXXXXXXX 1751
+ Q +W + +E+ EDSS+S W + +N
Sbjct: 1741 SDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQNSDQSSWGR 1800
Query: 1750 XXXXXXXXXXXGL---DKANKDGVSSSQGTQKM--DKKPQSSSWGTQKEENKQQSSWGQK 1586
+ K G + +QK D + SS E W
Sbjct: 1801 NKSGEQDGAERSQWASGSSQKSGAWEANPSQKWNADLVQEDSSRSNNDESKTNSGGWKAW 1860
Query: 1585 NNDXXXXXXXXSDKTNKDG-VSSSW--GTQKTDKKPQSSSWGAQKE----ENNQQSSWGQ 1427
+ S K +D S W G T P+ SWGA K+ ++N SSWG
Sbjct: 1861 GSSKTEVHEGESKKVQEDSWKSQKWKAGADVTQDSPKMGSWGATKDATKPKSNDWSSWG- 1919
Query: 1426 PXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQK 1247
KK+D E+ + W+ GK + S + Q+
Sbjct: 1920 ---------------------KKKD--EIHDGGSEKIQEDSWSSGKRKAESKSVADVMQE 1956
Query: 1246 QDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTESSWGQPKKTEEDKASEEDSNN 1067
+W ++K++D WD+ K SSWG+PK E N
Sbjct: 1957 DSSKSNTW---EHKSDDVKDS--------WDA-KVPVANSSWGKPKSQE---------NQ 1995
Query: 1066 GWDSKKGERKTQSS--WGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXX 893
WDSK T SS W +S DK
Sbjct: 1996 PWDSKNESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKNRFEGSQGSQGWGSNA 2055
Query: 892 XXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQS 713
+NRP + G +D++S+EEQD+L ++E I+ S+RRIM Q
Sbjct: 2056 GDWKNKNRPAR---------------PPGPRLDLYSSEEQDILKDIEPIVQSIRRIMQQQ 2100
Query: 712 GLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQ 536
G NDGD L AEDQ YV+ENV HHPDK K+G G+D + V +HS F +RCFYVV DG+
Sbjct: 2101 GYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDGK 2160
Query: 535 DTDFSYIKCLQHFVKGKYPSVAESFSQKYFRKPR 434
DFSY KCL+ FV+ KY AESF KYFRKPR
Sbjct: 2161 KEDFSYRKCLESFVRKKYADTAESFCGKYFRKPR 2194
Score = 116 bits (291), Expect = 5e-23
Identities = 187/776 (24%), Positives = 290/776 (37%), Gaps = 85/776 (10%)
Frame = -2
Query: 3067 EQENKAVFEDIVDTCEDSEI---LGTAGGSSWDASL---------SAGNGWNTNKXXXXX 2924
E+ N + EDI D +D + + S +DA S NGW++NK
Sbjct: 1259 EENNACLGEDIDDLLDDDNMDWGMSPEHTSGFDAVFDESFELLNGSTSNGWDSNK----- 1313
Query: 2923 XXXXXXXXXXXSKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNK-- 2750
DQ K +T W W NKS++ + + W S + K
Sbjct: 1314 --------------DQNK----TTTNDWSG---WGQNKSEIQVDVAETDQWGSGSTQKWK 1352
Query: 2749 AQSKPENSSKGSVSDAGKEWTANKIDMG---PGLTEDG----GWSSWGSKKDQSQ-PEAS 2594
A E+SSK + G +++ G G+ +DG W S S+K +S + S
Sbjct: 1353 ADITKEDSSKSGAWETGTNQNSDQPSWGGNKTGVQDDGVVKTQWESGSSQKLKSDINKDS 1412
Query: 2593 TKAGTIDASKTWSESILGKPSPAWG---PPVKDGG-----WSSLGSKKAES---QSEDSK 2447
+K+G +AS + P+WG V+D G W S S+K ++ Q SK
Sbjct: 1413 SKSGAWEASTNQNND-----QPSWGRNKSGVQDDGAVKTQWESGSSQKWKTDVIQENSSK 1467
Query: 2446 AGAKDAGKEWITNKKNGG---SGSAEDGG----WSSWGSKKAVSQ--PEASFKSGGKDAS 2294
+GA +A +++ + G SG +DG W S S+K + E S KSG +A+
Sbjct: 1468 SGAWEANTNKNSDQPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKSGAWEAN 1527
Query: 2293 KSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQW--GAAKSW 2120
+ K +P P+WG K DD + QW G+++ W
Sbjct: 1528 TN----KNSDP-PSWGKNKSGIQ--------------------DDGAVKTQWESGSSQKW 1562
Query: 2119 GGSNATEPASSWGKPAQESSPVQNSE------NLEGPNSWNDKVQ--PASSKGWDSSKFN 1964
E +S G A E++ +NS+ N G +K Q SS+ W +
Sbjct: 1563 KTDVIQEDSSKPG--AWEANTNKNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQ 1620
Query: 1963 EQGGTK-NWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXG--EDSSQS-- 1799
E +W + +N+ Q +W + +E+ EDSS+S
Sbjct: 1621 EDSSKSGSWGANTNQNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGS 1680
Query: 1798 WNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQ---GTQKMDKKPQSSSWGT 1628
W + +N +KA + SS + G + D +S SWG
Sbjct: 1681 WGANTNQNSDQPSWGKNKSGIQDGA----EKAQWESGSSQKWKAGVVQEDSS-KSGSWGA 1735
Query: 1627 QKEENKQQSSWGQKNNDXXXXXXXXSDKTN-KDGVSSSW--GTQKTDKKPQSSSWGAQKE 1457
+N Q SWG+ + +K + G S W G + D +S SWGA
Sbjct: 1736 NTNQNSDQPSWGKNKSGIQDGA----EKAQWESGSSQKWKAGVVQEDSS-KSGSWGANTN 1790
Query: 1456 ENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKK----------------EDKTELSTPNN 1325
+N+ QSSWG+ G S K ++ + S +
Sbjct: 1791 QNSDQSSWGR-NKSGEQDGAERSQWASGSSQKSGAWEANPSQKWNADLVQEDSSRSNNDE 1849
Query: 1324 SSASAGGWNVGKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGW---- 1157
S ++GGW KA G + + + + SW +S W
Sbjct: 1850 SKTNSGGW---KAWGSSKTEVHEGESKKVQEDSW-KSQKWKAGADVTQDSPKMGSWGATK 1905
Query: 1156 DSFKGKKTE-SSWGQPKKTEEDKASEEDSNNGWDSKKGERKTQS-SWGQSNNEDSS 995
D+ K K + SSWG+ K D SE+ + W S G+RK +S S EDSS
Sbjct: 1906 DATKPKSNDWSSWGKKKDEIHDGGSEKIQEDSWSS--GKRKAESKSVADVMQEDSS 1959
Score = 64.3 bits (155), Expect = 3e-07
Identities = 84/356 (23%), Positives = 126/356 (35%), Gaps = 29/356 (8%)
Frame = -2
Query: 2998 AGGSSWDASLSAGNGWNTNKXXXXXXXXXXXXXXXXS-KQDQPKPEDSSTAGGWGAK--K 2828
AG D+S S G NTN+ ++ Q S +G W A +
Sbjct: 1772 AGVVQEDSSKSGSWGANTNQNSDQSSWGRNKSGEQDGAERSQWASGSSQKSGAWEANPSQ 1831
Query: 2827 EWN-------TNKSDMGSGLEQDGGWSSWGSNKAQ-------SKPENSSKGSVSDAGKEW 2690
+WN +++S+ GGW +WGS+K + E+S K AG +
Sbjct: 1832 KWNADLVQEDSSRSNNDESKTNSGGWKAWGSSKTEVHEGESKKVQEDSWKSQKWKAGADV 1891
Query: 2689 TANKIDMGP-GLTEDG------GWSSWGSKKDQSQPEASTKAGTIDASKTWSESILGKPS 2531
T + MG G T+D WSSWG KKD+ S K
Sbjct: 1892 TQDSPKMGSWGATKDATKPKSNDWSSWGKKKDEIHDGGSEK------------------- 1932
Query: 2530 PAWGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGS 2351
+++ WSS G +KAES+S D +E ++K N ++D SW +
Sbjct: 1933 ------IQEDSWSS-GKRKAESKS------VADVMQE-DSSKSNTWEHKSDDVK-DSWDA 1977
Query: 2350 KKAVSQPEASFKSGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLP 2171
K V A+ SWG+ K P W
Sbjct: 1978 KVPV-------------ANSSWGKPKSQENQP-W-------------------------- 1997
Query: 2170 QPDDTSKANQWGAAKSWGGSNATEPASS-----WGKPAQESSPVQNSENLEGPNSW 2018
D +++N +++ W A+ + S WGKP +ES E +G W
Sbjct: 1998 --DSKNESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKNRFEGSQGSQGW 2051
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 239 bits (611), Expect = 4e-60
Identities = 255/972 (26%), Positives = 361/972 (37%), Gaps = 97/972 (9%)
Frame = -2
Query: 3055 KAVFEDIVDTCEDSEILGTAGGSSWDASLSAGNG------WNTNKXXXXXXXXXXXXXXX 2894
K FE + C + SW ++ G G W+ NK
Sbjct: 1188 KKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDIVWDANKIRSSEIEGMDVYSFL 1247
Query: 2893 XSKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGS 2714
+ + E+ + A D+ LE++ + S P NS +
Sbjct: 1248 HMVKGRTDREEETDA----------CLGEDIDDLLEEEN------LDLEMSPPRNSGFEA 1291
Query: 2713 VSDAGKEW----TANKIDMGPGLTED--GGWSSWGSKKDQSQPEASTKAGTIDASKTWSE 2552
V + E T+N D+ TE GWS W S K ++ S +A KT ++
Sbjct: 1292 VFEENPEVLNNSTSNGWDVNSSQTESKTNGWSGWVSNKAETNEGRSDRAQESSWGKTVTQ 1351
Query: 2551 SILGKPSPAWGPPV------KDGGWSSLGSKKAESQSEDSKA--GAKDAGK-EWITNKKN 2399
K S AW K WS+ GSKK+E Q+ S+ G+ +GK + +T K N
Sbjct: 1352 EDSSKSS-AWNTNTTGHTNTKSNEWSAWGSKKSEIQAGGSEKVEGSWGSGKTKDVTQKDN 1410
Query: 2398 GGSGS----------AEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGE------SKPG 2267
GSG+ + WSSWG+ + G ++ SWG ++ G
Sbjct: 1411 FGSGAWGANKTDQAKTKSNEWSSWGNNNS-----EILAGGSENMQDSWGSGGRKDVTQEG 1465
Query: 2266 N-PSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDT-SKANQWGAAKSWGGSNATEPA 2093
N S AWG D T +++N+W
Sbjct: 1466 NVTSGAWGA------------------------NVDQTKTQSNEW--------------- 1486
Query: 2092 SSWGKPAQESSPVQNSENLEGP---NSWNDKVQPA--SSKGWDSSKFNEQGGTKNWESKK 1928
S WGK E P SEN++G + W D V S+ GW GG + ++K
Sbjct: 1487 SGWGKNKSEI-PAGGSENVQGSWGSDKWKDGVTQVDNSASGW--------GGNRRDQTKA 1537
Query: 1927 IENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXX 1748
N W+ +G N EDS W S K +
Sbjct: 1538 KSNE----WSGRGS---------NKAEIPAGASENVQEDS---WGSGKLGDDVTEK---- 1577
Query: 1747 XXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWGTQK-------EENKQQSSWGQ 1589
D + ++ Q K + S WG K EN Q+ SWG
Sbjct: 1578 ------------DNSGSGAWGGNRRDQTKTKSNEWSGWGRNKLEIPAGGSENVQEDSWGS 1625
Query: 1588 KNNDXXXXXXXXSDKTNKDGVSS-SWGTQKTDK-KPQSSSW---GAQKEE------NNQQ 1442
D T D S +WG T + K +S+ W G K E N Q
Sbjct: 1626 GK--------LKDDVTQNDNSGSDAWGANSTGQTKSKSNEWSGRGKNKSEIPAGGSENVQ 1677
Query: 1441 SSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELST-----PNNSSASAGG--------W 1301
SWG G S K + T + N S AGG W
Sbjct: 1678 DSWGSGTRKDVTQVDTSVSGSWGGSRKDQTNTTSNEWAGWGRNKSEIPAGGCETVQEDSW 1737
Query: 1300 NVGKAHGDVA------SNSWGSQKQDKSQPSWGQ-SDNKNEDXXXXXXXXXXXGWDS--- 1151
GK DV S +WG+ K ++ + + NK E W+S
Sbjct: 1738 GSGKLKDDVTQKDNSGSGAWGANKTGLTKTEVDEWARNKVETADGGSEKLQEDSWNSGNL 1797
Query: 1150 -FKGKKTESSWGQPKKT------EEDKASEEDSNNGWDSKKGERKTQSS----WGQSNNE 1004
+ K +SWG+P + +++++ S+ GW+S + S WG+ E
Sbjct: 1798 KSESKVGNASWGKPNSSGSQSWDSHNQSNQNSSSRGWESHIASANSDSEKGFQWGKQGRE 1857
Query: 1003 DSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXX 824
RNRPP+
Sbjct: 1858 SFK--------------------KNRFEGSQGRGSNSGDWKNRNRPPRTP---------- 1887
Query: 823 PFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNH 644
G+ +D++S+EEQDVL E+E IM S+RRIM Q G NDGD L A+DQ +V+ENV H
Sbjct: 1888 -----GQRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYNDGDPLAADDQLFVLENVFEH 1942
Query: 643 HPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAE 467
HPDK K+G G+D++ V KHS F +RCFYVV DG+ DFSY KCL ++++ KYP +AE
Sbjct: 1943 HPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPELAE 2002
Query: 466 SFSQKYFRKPRS 431
SF KYFRKPR+
Sbjct: 2003 SFFGKYFRKPRN 2014
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 238 bits (606), Expect = 2e-59
Identities = 204/733 (27%), Positives = 290/733 (39%), Gaps = 56/733 (7%)
Frame = -2
Query: 2452 SKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKK----AVSQPEASFKSGGKDASKSW 2285
S G +W +N+ + S++ WS WG K V+ + + + D + SW
Sbjct: 1319 SLGAVSTGGGQWESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSW 1378
Query: 2284 GESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNA 2105
G +K N S + + T K+ W +A +WG
Sbjct: 1379 G-NKATNSS----------NDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTK 1427
Query: 2104 TEPASSWGKPAQES--SPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTK---NW 1940
+ P + S S +Q + E ++++ K + AS G K +G +K NW
Sbjct: 1428 DDSFKRETAPKKSSQWSGLQK-DKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTEDNW 1486
Query: 1939 ESK----------KIENNTQST--WAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSW 1796
S+ +++ + T W GG T KNS S W
Sbjct: 1487 SSQVKDKAESFQVQVQEVSSKTNGWGSTGGWT-KNS--------------GGDHQSEAGW 1531
Query: 1795 NSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSW---GTQ 1625
N G MD++ S W TQ
Sbjct: 1532 ND--------------------------------------GQASMDREKVSDRWDRKATQ 1553
Query: 1624 KEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGV-SSSWGTQKTDKKPQ---SSSWGAQKE 1457
K E+ Q SSWG + D V + SW QK+ + Q + +WG QK
Sbjct: 1554 KLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKS 1613
Query: 1456 E--------NNQQ--SSWGQPXXXXXXXXXXXXXXXXGESHKKEDKT-ELSTPNNSSASA 1310
NN+ S WG ES++ D + T S+
Sbjct: 1614 RDVIKPSLANNESNLSGWGSQI----------------ESNEGSDHGFDQVTNEQKSSDT 1657
Query: 1309 GGWNV--------GKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWD 1154
GW+ K AS SWGSQ S SWGQ +E+ +
Sbjct: 1658 RGWDSQEKTDKPWDKQKSLEASQSWGSQND--SLGSWGQPQRASEECSRESQDDSSTQFS 1715
Query: 1153 SFKGKKTESSWGQPKKTE-------EDKASEEDSNNGWDSKKGERKTQSSWGQSNNEDSS 995
K +T W Q K E ++SE+ S++GWD K K WG + E +
Sbjct: 1716 QLKPPETSLGWEQQKSPEVSHGWGSHKESSEQTSSHGWDKKNQGSK---GWGGNAGEWKN 1772
Query: 994 GPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXP-F 818
R+NRPPK +
Sbjct: 1773 --------------------------------------RKNRPPKSPGMSNDDANLRALY 1794
Query: 817 TANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHP 638
TA+G+ +D+F++EEQD+LA++E IM S+R++MHQSG NDGD L AEDQ++V+++V N HP
Sbjct: 1795 TASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHP 1854
Query: 637 DKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESF 461
DKAAK+G G+D V +HS F +RCFYVV+TDG DFSY KCL +F+KGKYP +AE F
Sbjct: 1855 DKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMF 1914
Query: 460 SQKYFRKPRSEGN 422
KYFRKPR N
Sbjct: 1915 VAKYFRKPRPNRN 1927
Score = 79.3 bits (194), Expect = 9e-12
Identities = 102/494 (20%), Positives = 182/494 (36%), Gaps = 18/494 (3%)
Frame = -2
Query: 2857 STAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSVSDAGKEWTANK 2678
ST GG +W +N++ + WS WG +++ + S++ + T++
Sbjct: 1324 STGGG-----QWESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSW 1378
Query: 2677 IDMGPGLTEDGGWSSWGSKKDQ----SQPEASTKAGTIDASKTWSESILGKPSPAWGPPV 2510
+ + D WS+ +K+ + + E + K+G D++ TW P
Sbjct: 1379 GNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTKDDSFKRETAPK 1438
Query: 2509 KDGGWSSLGSKKAESQSE-DSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKA--- 2342
K WS L KAE+Q KA W + G+ ED WSS KA
Sbjct: 1439 KSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTED-NWSSQVKDKAESF 1497
Query: 2341 -VSQPEASFKSGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQP 2165
V E S K+ G ++ W ++ G+ G
Sbjct: 1498 QVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAG-------------------WNDGQASM 1538
Query: 2164 DDTSKANQWGAAKSWGGSNATEPASSWGKP----AQESSP---VQNSENLEGPNSWNDKV 2006
D +++W + + SSWG P +++S P V +S+++ +SW+ +
Sbjct: 1539 DREKVSDRWDRKAT--QKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVN-HSWDRQK 1595
Query: 2005 QPASSKGWDSSKFNEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXX 1826
P +S+G+ + + +Q +++ + NN + S W + E N
Sbjct: 1596 SPEASQGFGNDAWGQQ-KSRDVIKPSLANNESNL------SGWGSQIESNEGSDHGFDQV 1648
Query: 1825 XXGEDSS--QSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKK 1652
+ SS + W+S++K ++ DK S S G+Q
Sbjct: 1649 TNEQKSSDTRGWDSQEKTDKPW------------------DKQKSLEASQSWGSQ----N 1686
Query: 1651 PQSSSWGTQKEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGVSSSWGTQKTDKKPQSSSW 1472
SWG + +++ S Q ++ + S W QK+ + S W
Sbjct: 1687 DSLGSWGQPQRASEECSRESQDDSS------TQFSQLKPPETSLGWEQQKSPE--VSHGW 1738
Query: 1471 GAQKEENNQQSSWG 1430
G+ KE + Q SS G
Sbjct: 1739 GSHKESSEQTSSHG 1752
Score = 60.1 bits (144), Expect = 6e-06
Identities = 79/387 (20%), Positives = 122/387 (31%), Gaps = 55/387 (14%)
Frame = -2
Query: 2866 EDSSTAGGWGAKKEWNTN-------------KSDMGSGLEQD------------------ 2780
E + +GGW + W T KS SGL++D
Sbjct: 1408 EKTPKSGGWDSASTWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKS 1467
Query: 2779 GGWSSWGSNKAQSKPENSSKGSVSDAGKEWTANKIDMGP---GLTEDGGWSSWGSKKDQS 2609
GGW ++ SK E++ V D + + ++ G GGW+ QS
Sbjct: 1468 GGWEDKAWSRGTSKTEDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQS 1527
Query: 2608 QPEASTKAGTIDASKT---WSESILGK----PSPAWGPPVKDGGWSSLGSKKAESQSEDS 2450
+ + ++D K W K + +WG P S SK +
Sbjct: 1528 EAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSV- 1586
Query: 2449 KAGAKDAGKEWITNKKNGGSGSAEDG-GWSSWGSKKAVSQPEASFKSGGKDASKSWGESK 2273
W K S A G G +WG +K+ + S + + S WG
Sbjct: 1587 ------VNHSWDRQK----SPEASQGFGNDAWGQQKSRDVIKPSLANNESNLS-GWGSQI 1635
Query: 2272 PGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPA 2093
N G +P D K+ + A++SWG N +
Sbjct: 1636 ESNEGSDHG--FDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLE--ASQSWGSQN--DSL 1689
Query: 2092 SSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSK-------------FNEQGG 1952
SWG+P + S + ++ P +S GW+ K +EQ
Sbjct: 1690 GSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHKESSEQTS 1749
Query: 1951 TKNWESKKIENNTQSTWAQQGGSTWKN 1871
+ W+ K N W G WKN
Sbjct: 1750 SHGWDKK---NQGSKGWGGNAGE-WKN 1772
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 238 bits (606), Expect = 2e-59
Identities = 204/733 (27%), Positives = 290/733 (39%), Gaps = 56/733 (7%)
Frame = -2
Query: 2452 SKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKK----AVSQPEASFKSGGKDASKSW 2285
S G +W +N+ + S++ WS WG K V+ + + + D + SW
Sbjct: 1379 SLGAVSTGGGQWESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSW 1438
Query: 2284 GESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNA 2105
G +K N S + + T K+ W +A +WG
Sbjct: 1439 G-NKATNSS----------NDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTK 1487
Query: 2104 TEPASSWGKPAQES--SPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTK---NW 1940
+ P + S S +Q + E ++++ K + AS G K +G +K NW
Sbjct: 1488 DDSFKRETAPKKSSQWSGLQK-DKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTEDNW 1546
Query: 1939 ESK----------KIENNTQST--WAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSW 1796
S+ +++ + T W GG T KNS S W
Sbjct: 1547 SSQVKDKAESFQVQVQEVSSKTNGWGSTGGWT-KNS--------------GGDHQSEAGW 1591
Query: 1795 NSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSW---GTQ 1625
N G MD++ S W TQ
Sbjct: 1592 ND--------------------------------------GQASMDREKVSDRWDRKATQ 1613
Query: 1624 KEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGV-SSSWGTQKTDKKPQ---SSSWGAQKE 1457
K E+ Q SSWG + D V + SW QK+ + Q + +WG QK
Sbjct: 1614 KLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKS 1673
Query: 1456 E--------NNQQ--SSWGQPXXXXXXXXXXXXXXXXGESHKKEDKT-ELSTPNNSSASA 1310
NN+ S WG ES++ D + T S+
Sbjct: 1674 RDVIKPSLANNESNLSGWGSQI----------------ESNEGSDHGFDQVTNEQKSSDT 1717
Query: 1309 GGWNV--------GKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWD 1154
GW+ K AS SWGSQ S SWGQ +E+ +
Sbjct: 1718 RGWDSQEKTDKPWDKQKSLEASQSWGSQND--SLGSWGQPQRASEECSRESQDDSSTQFS 1775
Query: 1153 SFKGKKTESSWGQPKKTE-------EDKASEEDSNNGWDSKKGERKTQSSWGQSNNEDSS 995
K +T W Q K E ++SE+ S++GWD K K WG + E +
Sbjct: 1776 QLKPPETSLGWEQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSK---GWGGNAGEWKN 1832
Query: 994 GPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXP-F 818
R+NRPPK +
Sbjct: 1833 --------------------------------------RKNRPPKSPGMSNDDANLRALY 1854
Query: 817 TANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHP 638
TA+G+ +D+F++EEQD+LA++E IM S+R++MHQSG NDGD L AEDQ++V+++V N HP
Sbjct: 1855 TASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHP 1914
Query: 637 DKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESF 461
DKAAK+G G+D V +HS F +RCFYVV+TDG DFSY KCL +F+KGKYP +AE F
Sbjct: 1915 DKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMF 1974
Query: 460 SQKYFRKPRSEGN 422
KYFRKPR N
Sbjct: 1975 VAKYFRKPRPNRN 1987
Score = 79.3 bits (194), Expect = 9e-12
Identities = 102/494 (20%), Positives = 182/494 (36%), Gaps = 18/494 (3%)
Frame = -2
Query: 2857 STAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSVSDAGKEWTANK 2678
ST GG +W +N++ + WS WG +++ + S++ + T++
Sbjct: 1384 STGGG-----QWESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSW 1438
Query: 2677 IDMGPGLTEDGGWSSWGSKKDQ----SQPEASTKAGTIDASKTWSESILGKPSPAWGPPV 2510
+ + D WS+ +K+ + + E + K+G D++ TW P
Sbjct: 1439 GNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTKDDSFKRETAPK 1498
Query: 2509 KDGGWSSLGSKKAESQSE-DSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKA--- 2342
K WS L KAE+Q KA W + G+ ED WSS KA
Sbjct: 1499 KSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTED-NWSSQVKDKAESF 1557
Query: 2341 -VSQPEASFKSGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQP 2165
V E S K+ G ++ W ++ G+ G
Sbjct: 1558 QVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAG-------------------WNDGQASM 1598
Query: 2164 DDTSKANQWGAAKSWGGSNATEPASSWGKP----AQESSP---VQNSENLEGPNSWNDKV 2006
D +++W + + SSWG P +++S P V +S+++ +SW+ +
Sbjct: 1599 DREKVSDRWDRKAT--QKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVN-HSWDRQK 1655
Query: 2005 QPASSKGWDSSKFNEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXX 1826
P +S+G+ + + +Q +++ + NN + S W + E N
Sbjct: 1656 SPEASQGFGNDAWGQQ-KSRDVIKPSLANNESNL------SGWGSQIESNEGSDHGFDQV 1708
Query: 1825 XXGEDSS--QSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKK 1652
+ SS + W+S++K ++ DK S S G+Q
Sbjct: 1709 TNEQKSSDTRGWDSQEKTDKPW------------------DKQKSLEASQSWGSQ----N 1746
Query: 1651 PQSSSWGTQKEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGVSSSWGTQKTDKKPQSSSW 1472
SWG + +++ S Q ++ + S W QK+ + S W
Sbjct: 1747 DSLGSWGQPQRASEECSRESQDDSS------TQFSQLKPPETSLGWEQQKSPE--VSHGW 1798
Query: 1471 GAQKEENNQQSSWG 1430
G+ KE + Q SS G
Sbjct: 1799 GSNKESSEQTSSHG 1812
Score = 60.1 bits (144), Expect = 6e-06
Identities = 79/387 (20%), Positives = 122/387 (31%), Gaps = 55/387 (14%)
Frame = -2
Query: 2866 EDSSTAGGWGAKKEWNTN-------------KSDMGSGLEQD------------------ 2780
E + +GGW + W T KS SGL++D
Sbjct: 1468 EKTPKSGGWDSASTWGTKTKDDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKS 1527
Query: 2779 GGWSSWGSNKAQSKPENSSKGSVSDAGKEWTANKIDMGP---GLTEDGGWSSWGSKKDQS 2609
GGW ++ SK E++ V D + + ++ G GGW+ QS
Sbjct: 1528 GGWEDKAWSRGTSKTEDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQS 1587
Query: 2608 QPEASTKAGTIDASKT---WSESILGK----PSPAWGPPVKDGGWSSLGSKKAESQSEDS 2450
+ + ++D K W K + +WG P S SK +
Sbjct: 1588 EAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSV- 1646
Query: 2449 KAGAKDAGKEWITNKKNGGSGSAEDG-GWSSWGSKKAVSQPEASFKSGGKDASKSWGESK 2273
W K S A G G +WG +K+ + S + + S WG
Sbjct: 1647 ------VNHSWDRQK----SPEASQGFGNDAWGQQKSRDVIKPSLANNESNLS-GWGSQI 1695
Query: 2272 PGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPA 2093
N G +P D K+ + A++SWG N +
Sbjct: 1696 ESNEGSDHG--FDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLE--ASQSWGSQN--DSL 1749
Query: 2092 SSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSK-------------FNEQGG 1952
SWG+P + S + ++ P +S GW+ K +EQ
Sbjct: 1750 GSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSNKESSEQTS 1809
Query: 1951 TKNWESKKIENNTQSTWAQQGGSTWKN 1871
+ W+ K N W G WKN
Sbjct: 1810 SHGWDKK---NQGSKGWGGNAGE-WKN 1832
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 236 bits (601), Expect = 6e-59
Identities = 208/801 (25%), Positives = 319/801 (39%), Gaps = 30/801 (3%)
Frame = -2
Query: 2746 QSKPENSSKGSV---SDAGKEWTANKIDMGPGL---TEDGGWSSWGSK---KDQSQPEAS 2594
++ P SS S+ S GK+W A KI G+ T+ S+WG K +D + P +
Sbjct: 1314 ENVPGKSSWDSIYTASTGGKDWGAVKIGTQDGISAETQADSTSAWGIKTPREDDTSPWGT 1373
Query: 2593 TKAGTIDASKTWSESILGKPSP-AWGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEW 2417
K T DA W + + +P AWG K +DA W
Sbjct: 1374 AKTATEDAPSAWGTKTVKEDAPSAWG----------------------IKTAREDARSPW 1411
Query: 2416 ITNK---KNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPSP-AW 2249
T K ++ S +A + S WG+ K + DA +WG +P AW
Sbjct: 1412 GTAKTATEDASSATAREDAPSPWGTAKTATG----------DALSAWGTKTLKEDAPSAW 1461
Query: 2248 GPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPASS-WG--K 2078
G + P P T+K A +WG +ATE A WG K
Sbjct: 1462 GT----------------KTVREDAPSPWGTAKRATEDAPAAWGAKSATEDAPPPWGTAK 1505
Query: 2077 PAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKNWESKKIENNTQSTWA 1898
A E + P++W K ++ + WE+K + + W
Sbjct: 1506 TAAE----------DAPSAWGVKAV-------------KKDASSPWETKTATEDATTAWG 1542
Query: 1897 QQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKEN-----RXXXXXXXXXXXXX 1733
+N+E+ + ED++ W + EN R
Sbjct: 1543 -------RNNEKKHVLTAEVLEDSKAREDATSGWGTENAENAQSTWRTSTESENGWSGRG 1595
Query: 1732 XXXXXGLDKANKDGVSSSQGTQKMD---KKPQSSSWGTQKEENKQQSSWGQKNNDXXXXX 1562
D ++ V + +G +KPQ+ + G S WG K ++
Sbjct: 1596 GSKVESTDVQSQKAVENPKGWNDFSAGVRKPQTENAG---------SGWGMKGSEKKGDI 1646
Query: 1561 XXXSDKTNKDGVSSSWGTQKTDKKPQSSSWGAQKEENNQQSSWGQPXXXXXXXXXXXXXX 1382
D++ + SW + D Q + W QK + + +W QP
Sbjct: 1647 ELEQDESTRH----SWKQKSADASSQGA-WERQKSPDTSKGTWEQPKSAEM--------- 1692
Query: 1381 XXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQKQDK-SQPSWGQSDNK 1205
SH + + + S G W + K + SWG QK + Q +WGQ +
Sbjct: 1693 ----SHGAWGQQK-----SPDVSQGVWGLEKPASTNSQGSWGQQKSPEIPQGNWGQQTSP 1743
Query: 1204 NEDXXXXXXXXXXXGWDSFKGKK-TESSWGQPKKTEEDKASEEDSNNGWDSK-KGERKTQ 1031
+ W K + ++ SWGQ K ++ S+ + N WDS+ + +
Sbjct: 1744 D---------ISQGTWGQQKSPEMSQGSWGQQKPSD---TSQPATVNQWDSQSEAAVERH 1791
Query: 1030 SSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXX 851
WG +N DS+ + + +RP K
Sbjct: 1792 QQWG--HNGDSNKRKRFEGGRSWGPNAGEWKG------------------KNSRPAKSPG 1831
Query: 850 XXXXXXXXXP-FTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQ 674
+TA + +DIF++EEQDVL+ +E MLS+RRIMHQSG NDGD L AED
Sbjct: 1832 MVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDH 1891
Query: 673 TYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHF 497
+++++ V N HP+K AK+G G+D+ TV +H F +RC +V+STDG+ DFSY KCLQ+
Sbjct: 1892 SFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQNM 1951
Query: 496 VKGKYPSVAESFSQKYFRKPR 434
+K KYP +AE+F+ KYF +PR
Sbjct: 1952 IKEKYPELAEAFNDKYFSRPR 1972
Score = 95.1 bits (235), Expect = 2e-16
Identities = 137/615 (22%), Positives = 206/615 (33%), Gaps = 63/615 (10%)
Frame = -2
Query: 3085 EHDRSPEQENKAVFEDIVDTCEDSEILGTAGGSSWDASLSAGNG---WNTNKXXXXXXXX 2915
EH+ S + K VFEDIV+ ++ E G SSWD+ +A G W K
Sbjct: 1293 EHNSSSD---KPVFEDIVEFPDNFE--NVPGKSSWDSIYTASTGGKDWGAVKIGTQDGIS 1347
Query: 2914 XXXXXXXXSKQD--QPKPEDSSTAG-----------GWGAKKEWNTNKSDMGSGLEQDGG 2774
S P+ +D+S G WG K S G ++
Sbjct: 1348 AETQADSTSAWGIKTPREDDTSPWGTAKTATEDAPSAWGTKTVKEDAPSAWGIKTAREDA 1407
Query: 2773 WSSWGSNKAQSKPENSSKGSVSDAGKEWTANKIDMGPGLT-------EDGGWSSWGSK-- 2621
S WG+ K ++ + SS + DA W K G L+ ++ S+WG+K
Sbjct: 1408 RSPWGTAKTATE-DASSATAREDAPSPWGTAKTATGDALSAWGTKTLKEDAPSAWGTKTV 1466
Query: 2620 -KDQSQPEASTKAGTIDASKTW-SESILGKPSPAWGPPVKDGGWSSLGSKKAESQSEDS- 2450
+D P + K T DA W ++S P WG A++ +ED+
Sbjct: 1467 REDAPSPWGTAKRATEDAPAAWGAKSATEDAPPPWG--------------TAKTAAEDAP 1512
Query: 2449 -----KAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGK-DASKS 2288
KA KDA W T + +A W KK V E S + DA+
Sbjct: 1513 SAWGVKAVKKDASSPWETKTATEDATTA----WGRNNEKKHVLTAEVLEDSKAREDATSG 1568
Query: 2287 WGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSN 2108
WG N W T N W GGS
Sbjct: 1569 WGTENAENAQSTW---------------------------RTSTESENGWSGR---GGSK 1598
Query: 2107 ATEPASSWGKPAQESSPVQNSENLEGPNSWND------KVQPASS-KGWDSSKFNEQGGT 1949
ES+ VQ+ + +E P WND K Q ++ GW ++G
Sbjct: 1599 V------------ESTDVQSQKAVENPKGWNDFSAGVRKPQTENAGSGWGMKGSEKKGDI 1646
Query: 1948 K---------NWESKKIENNTQSTWAQQ-----GGSTWKNSEEVNXXXXXXXXXXXXGED 1811
+ +W+ K + ++Q W +Q TW+ + E
Sbjct: 1647 ELEQDESTRHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSA--------------EM 1692
Query: 1810 SSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWG 1631
S +W +K + GL+K S G QK + PQ +WG
Sbjct: 1693 SHGAWGQQKSPD-------------VSQGVWGLEKPASTNSQGSWGQQKSPEIPQ-GNWG 1738
Query: 1630 TQKEENKQQSSWGQKNNDXXXXXXXXSDK---TNKDGVSSSWGTQKTDKKPQSSSWGAQK 1460
Q + Q +WGQ+ + K T++ + W +Q + WG
Sbjct: 1739 QQTSPDISQGTWGQQKSPEMSQGSWGQQKPSDTSQPATVNQWDSQSEAAVERHQQWGHNG 1798
Query: 1459 EENNQQ-----SSWG 1430
+ N ++ SWG
Sbjct: 1799 DSNKRKRFEGGRSWG 1813
Score = 71.6 bits (174), Expect = 2e-09
Identities = 90/414 (21%), Positives = 133/414 (32%), Gaps = 41/414 (9%)
Frame = -2
Query: 2113 SNATEPASSWGKPAQESSPV--QNSENLEGPNSWNDKVQPASSKG--WDSSKFNEQGG-- 1952
S + E SS KP E N EN+ G +SW D + AS+ G W + K Q G
Sbjct: 1289 SLSPEHNSSSDKPVFEDIVEFPDNFENVPGKSSW-DSIYTASTGGKDWGAVKIGTQDGIS 1347
Query: 1951 -------TKNWESKKIENNTQSTWA------QQGGSTWKNSEEVNXXXXXXXXXXXXGED 1811
T W K + S W + S W ++ V ED
Sbjct: 1348 AETQADSTSAWGIKTPREDDTSPWGTAKTATEDAPSAW-GTKTVKEDAPSAWGIKTARED 1406
Query: 1810 SSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWG 1631
+ W + K K S+ GT+ + K+ S+WG
Sbjct: 1407 ARSPWGTAKTATEDASSATAREDAPSPWGTA---KTATGDALSAWGTKTL-KEDAPSAWG 1462
Query: 1630 TQKEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGVSSSWGTQKTDKKPQSSSWGAQKEEN 1451
T+ S WG K+ + WGT KT + S+WG + +
Sbjct: 1463 TKTVREDAPSPWGTAKRATEDAPAAWGAKSATEDAPPPWGTAKTAAEDAPSAWGVKAVKK 1522
Query: 1450 NQQSSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGDVA 1271
+ S W E T + +A G N K H A
Sbjct: 1523 DASSPW-----------------------------ETKTATEDATTAWGRNNEKKHVLTA 1553
Query: 1270 SNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTESSWGQPKKTEED- 1094
S+ ++ + WG + +N GW G K ES+ Q +K E+
Sbjct: 1554 EVLEDSKAREDATSGWGTENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENP 1613
Query: 1093 -----------KASEEDSNNGWDSKKGERK----------TQSSWGQSNNEDSS 995
K E++ +GW K E+K T+ SW Q + + SS
Sbjct: 1614 KGWNDFSAGVRKPQTENAGSGWGMKGSEKKGDIELEQDESTRHSWKQKSADASS 1667
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 227 bits (579), Expect = 2e-56
Identities = 191/711 (26%), Positives = 287/711 (40%), Gaps = 15/711 (2%)
Frame = -2
Query: 2512 VKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKAVSQ 2333
VK+ WS LG AE+ ++ + +G A N N + A+ +S W +KK +
Sbjct: 1344 VKEKPWS-LGMNTAEA-NDVASSGWDTAAARTTNNSWNSENNVAQSNSFSGWATKKP--E 1399
Query: 2332 PEASFKSGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTS 2153
P F + ++ + S + AWG + D +
Sbjct: 1400 PHNGFATKVQEEPTT---SNDWDAGAAWG-------------------------RKDRDN 1431
Query: 2152 KANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKV-QPASSKGWDS 1976
K + A+KSW G S K + Q+ G + W+DK+ Q S GW +
Sbjct: 1432 KFAETNASKSWWGKVTDGDESGQNKSKNKRPEDQDV----GTHGWDDKMSQDQSISGW-A 1486
Query: 1975 SKFNEQGGTKN--WESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQ 1802
SK ++ T++ W+SK N + + STW +E + D++
Sbjct: 1487 SKTTQEATTESLGWDSKGNSNPGDAACGWKAASTW-GAENTDGDKLWGKEVSSNQADTAS 1545
Query: 1801 SWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKD-GVSSSQGTQKMDKKPQSSSWGTQ 1625
W K K+++ GVSSS G + DKK ++ S Q
Sbjct: 1546 GWGKPKSPEISLGWGSTKESV----------KSDRGWGVSSSGGGR--DKKTENQSLAGQ 1593
Query: 1624 KEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGVSSSWGTQKTDKKPQSSSWGAQKEENNQ 1445
K+ WG K +N+ +S WG K+ + Q WG KE +
Sbjct: 1594 ---GKESGGWGNKVT------------SNQADTASGWGKPKSSENSQG--WGLSKESGKE 1636
Query: 1444 QSSWGQPXXXXXXXXXXXXXXXXGE--SHKKEDKTELSTPNNSSASAGGWNVGKAHGDVA 1271
WG P KE + +N +A GW GK
Sbjct: 1637 VHEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTASGW--GKPKSPAL 1694
Query: 1270 SNSWGSQKQD-KSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTESSWGQPKKTEED 1094
S WGS ++ K+ WG ++ + G + WGQ ++ E
Sbjct: 1695 SEGWGSPREPVKAVHGWGVPNSGGGN-----------------GSGRDQQWGQ--QSREF 1735
Query: 1093 KASEEDSNNGWDSKKGERKTQSSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXX 914
K + + GW S G+ K
Sbjct: 1736 KKDRFEGSRGWGSNNGDWKN---------------------------------------- 1755
Query: 913 XXXXXXXXXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSM 734
+RNRP K FT + +D+F+++EQD+L+++E +MLS+
Sbjct: 1756 -----------KRNRPSK---PHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSI 1801
Query: 733 RRIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFY 557
RRIMHQ+G NDGD L A+DQ+YV++NV ++HPDKA K+G G+D +TV +HS F +RCFY
Sbjct: 1802 RRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFY 1861
Query: 556 VVSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYF-------RKPRSEG 425
+VSTDG DFSY KCL++F+KGKYP +A+ F KYF R P EG
Sbjct: 1862 IVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFARRGNRQRTPAPEG 1912
Score = 63.5 bits (153), Expect = 5e-07
Identities = 105/443 (23%), Positives = 147/443 (33%), Gaps = 47/443 (10%)
Frame = -2
Query: 3058 NKAVFEDIVDTCEDSEILGTAGGSSWD-----ASLSAGNGWNTNKXXXXXXXXXXXXXXX 2894
N A D+ + D+ T +SW+ A ++ +GW T K
Sbjct: 1354 NTAEANDVASSGWDTAAARTTN-NSWNSENNVAQSNSFSGWATKKPEPHNGFATKV---- 1408
Query: 2893 XSKQDQPKPEDSSTAGG-WGAKKEWN----TNKSDMGSGLEQDGGWSSWGSNKAQSK-PE 2732
Q++P + AG WG K N TN S G DG S G NK+++K PE
Sbjct: 1409 ---QEEPTTSNDWDAGAAWGRKDRDNKFAETNASKSWWGKVTDGDES--GQNKSKNKRPE 1463
Query: 2731 NSSKGS-------VSDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTID 2573
+ G+ D A+K TE GW S G+ A T
Sbjct: 1464 DQDVGTHGWDDKMSQDQSISGWASKTTQ-EATTESLGWDSKGNSNPGDAACGWKAASTWG 1522
Query: 2572 ASKTWSESILGKP--------SPAWGPPVKDGGWSSLGSKKAESQSE-----DSKAGAKD 2432
A T + + GK + WG P GS K +S+ S G +D
Sbjct: 1523 AENTDGDKLWGKEVSSNQADTASGWGKPKSPEISLGWGSTKESVKSDRGWGVSSSGGGRD 1582
Query: 2431 AGKEWITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPSPA 2252
E N+ G G E GGW G+K +Q D + WG+ K S
Sbjct: 1583 KKTE---NQSLAGQGK-ESGGW---GNKVTSNQA---------DTASGWGKPKSSENSQG 1626
Query: 2251 WGPVKXXXXXXXXXXXXXXXXXXXNLPQP----------------DDTSKANQWGAAKSW 2120
WG K + D+ + +NQ G A W
Sbjct: 1627 WGLSKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTASGW 1686
Query: 2119 GGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKNW 1940
G + + WG P + PV+ PN S G + S ++Q G ++
Sbjct: 1687 GKPKSPALSEGWGSPRE---PVKAVHGWGVPN----------SGGGNGSGRDQQWGQQSR 1733
Query: 1939 ESKKIENNTQSTWAQQGGSTWKN 1871
E KK W G WKN
Sbjct: 1734 EFKKDRFEGSRGWGSNNGD-WKN 1755
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 209 bits (532), Expect = 6e-51
Identities = 195/737 (26%), Positives = 283/737 (38%), Gaps = 24/737 (3%)
Frame = -2
Query: 2560 WS---ESILGKPSPAWGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKE-WI---TNKK 2402
WS E L P + V+D W K E+++ DS+A + + ++ W T+ +
Sbjct: 1282 WSLSPEHNLCSDKPIFEDLVEDQSWLE---NKQENENWDSEADCRKSSEDKWEKLGTSLE 1338
Query: 2401 NGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPSPAWGPVKXXXXX 2222
SG +G W K S K G SWGES P
Sbjct: 1339 KPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSSDKWENVGSPA------ 1392
Query: 2221 XXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSE 2042
++WG SWG S +P + A+ SS
Sbjct: 1393 ---------------------AKSFSEWGTEASWGKSFGDKPENVRSPAAKTSS------ 1425
Query: 2041 NLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKNWESKKIEN-NTQSTWAQQGGSTWKNSE 1865
W S W S + Q SK + +++W G S+ E
Sbjct: 1426 ------GWG------SEASWGKSPGDRQENVGRSASKPLSGWGAKASW---GKSSEDKLE 1470
Query: 1864 EVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDK--ANKDG 1691
EV S +W + ++ L+K A +
Sbjct: 1471 EVETTVAKP----------SSAWGTEASWDKSSEVT--------------LEKVAAPAEN 1506
Query: 1690 VSSSQGTQKMDKKPQSSSWGTQKEENKQQSSWGQKNNDXXXXXXXXSDKTNKDGVSSSWG 1511
S GT+ D +SS W K+ +SWG+ ++ + + +SW
Sbjct: 1507 PLSGWGTEAQDSG-KSSDWSEWKDHANATASWGRNGSE----------ENSGWDTKASWN 1555
Query: 1510 TQKTDK--------KPQSSSWGAQKEENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKKE 1355
T+ DK + SS WGA+++ + + W E
Sbjct: 1556 TKALDKLDDVGSAVENSSSVWGAREDFSTK--GW-------------------------E 1588
Query: 1354 DKTELSTPNNSSA-SAGGWNVGKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXX 1178
D ++ S S GGWNV A G +SWG QK ++ K D
Sbjct: 1589 DSSKPSANEKSIVHQIGGWNVPDAKG-TDDSSWGKQKLTENA--------KGTD------ 1633
Query: 1177 XXXXXGWDSFKGKKTESSWGQPKKTEEDKASEEDSNNGWD---SKKGERKTQSSWGQSNN 1007
+SSWG+ K TE + +S+ S+N WD + G WGQS
Sbjct: 1634 ---------------DSSWGKQKHTENE-SSQPASSNAWDLPDATGGSETEMQVWGQSRK 1677
Query: 1006 EDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXX 827
E P K ++NRPP+
Sbjct: 1678 E----PFKKNRGWASSSGEWKG--------------------KKNRPPRSPGVVNDDSTV 1713
Query: 826 XP-FTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVL 650
+T + +D+F++EEQD+L++VE IM S+RRIMHQSG NDGD L A+D++++ +NV
Sbjct: 1714 NAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVF 1773
Query: 649 NHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSV 473
N+HPDKA K+G G+D V KH F +RC +VVSTDG DFSY KCL+ F++GKYP
Sbjct: 1774 NYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEF 1833
Query: 472 AESFSQKYFRKPRSEGN 422
+ F KYFR+PRS GN
Sbjct: 1834 VDEFIGKYFRRPRSGGN 1850
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 204 bits (519), Expect = 2e-49
Identities = 188/721 (26%), Positives = 278/721 (38%), Gaps = 30/721 (4%)
Frame = -2
Query: 2494 SSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFK 2315
S+LG K E ++ D GK N + S G S WG K+
Sbjct: 1286 SALGEPKFEDSADFQNL--HDEGKPSGANWEKSSSWDNGCSGGSEWGVSKSTG------- 1336
Query: 2314 SGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWG 2135
G + +W ++ AW ++SK++ G
Sbjct: 1337 -GEANPESNWEKTTNVEKEDAWSSWNTRK-------------------DAQESSKSDSGG 1376
Query: 2134 AAKSWGGSNATEPASSWGKPAQESSPVQNS----ENLEGPNS-WNDKVQPASSKGWDSSK 1970
A WG T+ A + P E+SP EN E + W K S K WD
Sbjct: 1377 A---WGIK--TKDADADTTPNWETSPAPKDSIVPENNEPTSDVWGHK--SVSDKSWDK-- 1427
Query: 1969 FNEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNS 1790
KNW ++ + + W + W +S++ N E + +W S
Sbjct: 1428 -------KNWGTE----SAPAAWGSTDAAVWGSSDKKNSET----------ESDAAAWGS 1466
Query: 1789 RKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWGTQKEENK 1610
R K N D + GV + + + ++WG+ +
Sbjct: 1467 RDKNNS--------------------DVGSGAGVLGPWNKKSSETESNGATWGSSDKTKS 1506
Query: 1609 QQSSWGQKNNDXXXXXXXXSDKTN--KDGVSSSWGTQ-KTDKKPQS--SSWGAQKEENNQ 1445
++W DK N D ++WG+Q K + + +S ++WGA ++ ++
Sbjct: 1507 GAAAWNS------------WDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKKKSE 1554
Query: 1444 Q----SSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGD 1277
+ WG KK +TEL A+ G W+ K+
Sbjct: 1555 TEPGPAGWGM-------------------GDKKNSETELGP-----AAMGNWDKKKSDTK 1590
Query: 1276 VASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTE--------SSW 1121
+WGS +WG SD N + W S K +E SW
Sbjct: 1591 SGPAAWGST----DAAAWGSSDKNNSETESDAAA-----WGSRNKKTSEIESGAGAWGSW 1641
Query: 1120 GQPKKTEEDKASEEDSNNGW------DSKKGERKTQSSWGQSNNE-DSSGPDKXXXXXXX 962
GQP T EDK + ED N W S++ + K +S WG + SSG
Sbjct: 1642 GQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSG---------- 1691
Query: 961 XXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSA 782
RN P+ FTA + +D F++
Sbjct: 1692 ---------------GWSNGGGADWKGNRNHTPR--PPRSEDNLAPMFTATRQRLDSFTS 1734
Query: 781 EEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDF 602
EEQ++L++VE +M ++R+IMH S DGD + +D+T+V+E +LN HP K K+G GVDF
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794
Query: 601 ITVKKHSKFG-NRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYFRKPRSEG 425
ITV KH+ F +RCF+VVSTDG DFSY K L +++ KYP AE F KYF KPR G
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 1854
Query: 424 N 422
N
Sbjct: 1855 N 1855
Score = 75.9 bits (185), Expect = 1e-10
Identities = 101/463 (21%), Positives = 165/463 (35%), Gaps = 62/463 (13%)
Frame = -2
Query: 3070 PEQENKAVFEDIVDTCEDSEILGTAGGSSWDASLSAGNGWNTNKXXXXXXXXXXXXXXXX 2891
P+ E+ A F+++ D + S SSWD S G+ W +K
Sbjct: 1291 PKFEDSADFQNLHDEGKPSGA-NWEKSSSWDNGCSGGSEWGVSK---------------- 1333
Query: 2890 SKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSV 2711
ST G + W + +E++ WSSW + K ++ + S
Sbjct: 1334 -----------STGGEANPESNWEKT-----TNVEKEDAWSSWNTRK------DAQESSK 1371
Query: 2710 SDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTI-----DASKTWSESI 2546
SD+G W D T + W + + KD PE + + + K+W +
Sbjct: 1372 SDSGGAWGIKTKDADADTTPN--WETSPAPKDSIVPENNEPTSDVWGHKSVSDKSWDKKN 1429
Query: 2545 LGKPSP--AWGPPVKDGGWSSLGSKKAESQSEDSKAGAKD---------AGKEWITNKK- 2402
G S AWG W S K +E++S+ + G++D AG NKK
Sbjct: 1430 WGTESAPAAWGS-TDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKS 1488
Query: 2401 -----NGGSGSAED------GGWSSWGSKKAVSQPE-ASFKSGGKDASKS------WG-- 2282
NG + + D W+SW K + E A++ S GK S++ WG
Sbjct: 1489 SETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAW 1548
Query: 2281 -----ESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGA--AKS 2123
E++PG G K + D S WG+ A +
Sbjct: 1549 DKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKK-----KSDTKSGPAAWGSTDAAA 1603
Query: 2122 WGGSNATEP-----ASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQ 1958
WG S+ A++WG +++S +++ G SW A K + N
Sbjct: 1604 WGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWG--SWGQPSPTAEDKDTNEDDRNPW 1661
Query: 1957 GGTKNWESKKIENNTQSTWAQQ-------------GGSTWKNS 1868
K +S++ ++ +S W GG+ WK +
Sbjct: 1662 VSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGN 1704
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 204 bits (519), Expect = 2e-49
Identities = 188/721 (26%), Positives = 278/721 (38%), Gaps = 30/721 (4%)
Frame = -2
Query: 2494 SSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFK 2315
S+LG K E ++ D GK N + S G S WG K+
Sbjct: 1286 SALGEPKFEDSADFQNL--HDEGKPSGANWEKSSSWDNGCSGGSEWGVSKSTG------- 1336
Query: 2314 SGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWG 2135
G + +W ++ AW ++SK++ G
Sbjct: 1337 -GEANPESNWEKTTNVEKEDAWSSWNTRK-------------------DAQESSKSDSGG 1376
Query: 2134 AAKSWGGSNATEPASSWGKPAQESSPVQNS----ENLEGPNS-WNDKVQPASSKGWDSSK 1970
A WG T+ A + P E+SP EN E + W K S K WD
Sbjct: 1377 A---WGIK--TKDADADTTPNWETSPAPKDSIVPENNEPTSDVWGHK--SVSDKSWDK-- 1427
Query: 1969 FNEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNS 1790
KNW ++ + + W + W +S++ N E + +W S
Sbjct: 1428 -------KNWGTE----SAPAAWGSTDAAVWGSSDKKNSET----------ESDAAAWGS 1466
Query: 1789 RKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWGTQKEENK 1610
R K N D + GV + + + ++WG+ +
Sbjct: 1467 RDKNNS--------------------DVGSGAGVLGPWNKKSSETESNGATWGSSDKTKS 1506
Query: 1609 QQSSWGQKNNDXXXXXXXXSDKTN--KDGVSSSWGTQ-KTDKKPQS--SSWGAQKEENNQ 1445
++W DK N D ++WG+Q K + + +S ++WGA ++ ++
Sbjct: 1507 GAAAWNS------------WDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKKKSE 1554
Query: 1444 Q----SSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGD 1277
+ WG KK +TEL A+ G W+ K+
Sbjct: 1555 TEPGPAGWGM-------------------GDKKNSETELGP-----AAMGNWDKKKSDTK 1590
Query: 1276 VASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTE--------SSW 1121
+WGS +WG SD N + W S K +E SW
Sbjct: 1591 SGPAAWGST----DAAAWGSSDKNNSETESDAAA-----WGSRNKKTSEIESGAGAWGSW 1641
Query: 1120 GQPKKTEEDKASEEDSNNGW------DSKKGERKTQSSWGQSNNE-DSSGPDKXXXXXXX 962
GQP T EDK + ED N W S++ + K +S WG + SSG
Sbjct: 1642 GQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSG---------- 1691
Query: 961 XXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSA 782
RN P+ FTA + +D F++
Sbjct: 1692 ---------------GWSNGGGADWKGNRNHTPR--PPRSEDNLAPMFTATRQRLDSFTS 1734
Query: 781 EEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDF 602
EEQ++L++VE +M ++R+IMH S DGD + +D+T+V+E +LN HP K K+G GVDF
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794
Query: 601 ITVKKHSKFG-NRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYFRKPRSEG 425
ITV KH+ F +RCF+VVSTDG DFSY K L +++ KYP AE F KYF KPR G
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 1854
Query: 424 N 422
N
Sbjct: 1855 N 1855
Score = 75.9 bits (185), Expect = 1e-10
Identities = 101/463 (21%), Positives = 165/463 (35%), Gaps = 62/463 (13%)
Frame = -2
Query: 3070 PEQENKAVFEDIVDTCEDSEILGTAGGSSWDASLSAGNGWNTNKXXXXXXXXXXXXXXXX 2891
P+ E+ A F+++ D + S SSWD S G+ W +K
Sbjct: 1291 PKFEDSADFQNLHDEGKPSGA-NWEKSSSWDNGCSGGSEWGVSK---------------- 1333
Query: 2890 SKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSV 2711
ST G + W + +E++ WSSW + K ++ + S
Sbjct: 1334 -----------STGGEANPESNWEKT-----TNVEKEDAWSSWNTRK------DAQESSK 1371
Query: 2710 SDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTI-----DASKTWSESI 2546
SD+G W D T + W + + KD PE + + + K+W +
Sbjct: 1372 SDSGGAWGIKTKDADADTTPN--WETSPAPKDSIVPENNEPTSDVWGHKSVSDKSWDKKN 1429
Query: 2545 LGKPSP--AWGPPVKDGGWSSLGSKKAESQSEDSKAGAKD---------AGKEWITNKK- 2402
G S AWG W S K +E++S+ + G++D AG NKK
Sbjct: 1430 WGTESAPAAWGS-TDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKS 1488
Query: 2401 -----NGGSGSAED------GGWSSWGSKKAVSQPE-ASFKSGGKDASKS------WG-- 2282
NG + + D W+SW K + E A++ S GK S++ WG
Sbjct: 1489 SETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAW 1548
Query: 2281 -----ESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGA--AKS 2123
E++PG G K + D S WG+ A +
Sbjct: 1549 DKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKK-----KSDTKSGPAAWGSTDAAA 1603
Query: 2122 WGGSNATEP-----ASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQ 1958
WG S+ A++WG +++S +++ G SW A K + N
Sbjct: 1604 WGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWG--SWGQPSPTAEDKDTNEDDRNPW 1661
Query: 1957 GGTKNWESKKIENNTQSTWAQQ-------------GGSTWKNS 1868
K +S++ ++ +S W GG+ WK +
Sbjct: 1662 VSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGN 1704
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 204 bits (519), Expect = 2e-49
Identities = 188/721 (26%), Positives = 278/721 (38%), Gaps = 30/721 (4%)
Frame = -2
Query: 2494 SSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFK 2315
S+LG K E ++ D GK N + S G S WG K+
Sbjct: 149 SALGEPKFEDSADFQNL--HDEGKPSGANWEKSSSWDNGCSGGSEWGVSKSTG------- 199
Query: 2314 SGGKDASKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWG 2135
G + +W ++ AW ++SK++ G
Sbjct: 200 -GEANPESNWEKTTNVEKEDAWSSWNTRK-------------------DAQESSKSDSGG 239
Query: 2134 AAKSWGGSNATEPASSWGKPAQESSPVQNS----ENLEGPNS-WNDKVQPASSKGWDSSK 1970
A WG T+ A + P E+SP EN E + W K S K WD
Sbjct: 240 A---WGIK--TKDADADTTPNWETSPAPKDSIVPENNEPTSDVWGHK--SVSDKSWDK-- 290
Query: 1969 FNEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNS 1790
KNW ++ + + W + W +S++ N E + +W S
Sbjct: 291 -------KNWGTE----SAPAAWGSTDAAVWGSSDKKNSET----------ESDAAAWGS 329
Query: 1789 RKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWGTQKEENK 1610
R K N D + GV + + + ++WG+ +
Sbjct: 330 RDKNNS--------------------DVGSGAGVLGPWNKKSSETESNGATWGSSDKTKS 369
Query: 1609 QQSSWGQKNNDXXXXXXXXSDKTN--KDGVSSSWGTQ-KTDKKPQS--SSWGAQKEENNQ 1445
++W DK N D ++WG+Q K + + +S ++WGA ++ ++
Sbjct: 370 GAAAWNS------------WDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKKKSE 417
Query: 1444 Q----SSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGD 1277
+ WG KK +TEL A+ G W+ K+
Sbjct: 418 TEPGPAGWGM-------------------GDKKNSETELGP-----AAMGNWDKKKSDTK 453
Query: 1276 VASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTE--------SSW 1121
+WGS +WG SD N + W S K +E SW
Sbjct: 454 SGPAAWGST----DAAAWGSSDKNNSETESDAAA-----WGSRNKKTSEIESGAGAWGSW 504
Query: 1120 GQPKKTEEDKASEEDSNNGW------DSKKGERKTQSSWGQSNNE-DSSGPDKXXXXXXX 962
GQP T EDK + ED N W S++ + K +S WG + SSG
Sbjct: 505 GQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSG---------- 554
Query: 961 XXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSA 782
RN P+ FTA + +D F++
Sbjct: 555 ---------------GWSNGGGADWKGNRNHTPR--PPRSEDNLAPMFTATRQRLDSFTS 597
Query: 781 EEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDF 602
EEQ++L++VE +M ++R+IMH S DGD + +D+T+V+E +LN HP K K+G GVDF
Sbjct: 598 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 657
Query: 601 ITVKKHSKFG-NRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYFRKPRSEG 425
ITV KH+ F +RCF+VVSTDG DFSY K L +++ KYP AE F KYF KPR G
Sbjct: 658 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 717
Query: 424 N 422
N
Sbjct: 718 N 718
Score = 75.9 bits (185), Expect = 1e-10
Identities = 101/463 (21%), Positives = 165/463 (35%), Gaps = 62/463 (13%)
Frame = -2
Query: 3070 PEQENKAVFEDIVDTCEDSEILGTAGGSSWDASLSAGNGWNTNKXXXXXXXXXXXXXXXX 2891
P+ E+ A F+++ D + S SSWD S G+ W +K
Sbjct: 154 PKFEDSADFQNLHDEGKPSGA-NWEKSSSWDNGCSGGSEWGVSK---------------- 196
Query: 2890 SKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSV 2711
ST G + W + +E++ WSSW + K ++ + S
Sbjct: 197 -----------STGGEANPESNWEKT-----TNVEKEDAWSSWNTRK------DAQESSK 234
Query: 2710 SDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTI-----DASKTWSESI 2546
SD+G W D T + W + + KD PE + + + K+W +
Sbjct: 235 SDSGGAWGIKTKDADADTTPN--WETSPAPKDSIVPENNEPTSDVWGHKSVSDKSWDKKN 292
Query: 2545 LGKPSP--AWGPPVKDGGWSSLGSKKAESQSEDSKAGAKD---------AGKEWITNKK- 2402
G S AWG W S K +E++S+ + G++D AG NKK
Sbjct: 293 WGTESAPAAWGS-TDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKS 351
Query: 2401 -----NGGSGSAED------GGWSSWGSKKAVSQPE-ASFKSGGKDASKS------WG-- 2282
NG + + D W+SW K + E A++ S GK S++ WG
Sbjct: 352 SETESNGATWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAW 411
Query: 2281 -----ESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGA--AKS 2123
E++PG G K + D S WG+ A +
Sbjct: 412 DKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKK-----KSDTKSGPAAWGSTDAAA 466
Query: 2122 WGGSNATEP-----ASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQ 1958
WG S+ A++WG +++S +++ G SW A K + N
Sbjct: 467 WGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWG--SWGQPSPTAEDKDTNEDDRNPW 524
Query: 1957 GGTKNWESKKIENNTQSTWAQQ-------------GGSTWKNS 1868
K +S++ ++ +S W GG+ WK +
Sbjct: 525 VSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGN 567
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 203 bits (516), Expect = 4e-49
Identities = 224/925 (24%), Positives = 342/925 (36%), Gaps = 41/925 (4%)
Frame = -2
Query: 3073 SPEQEN--KAVFEDIVDTCEDSEILGTAGGSSWD------ASLSAGNGWNTNKXXXXXXX 2918
SPE N + VFEDI D +D G SSWD + S+G W +N
Sbjct: 1285 SPENFNSDRPVFEDI-DEFQDISEKDLPGKSSWDNLSSFRSGSSSGKEWGSNNNVGTKYD 1343
Query: 2917 XXXXXXXXXSKQDQPKPE----DSSTAGGWGAKK----EWNTNKSDMGSGLEQDGGWSSW 2762
++ + P D+S + GW K E T KSD ++
Sbjct: 1344 VGSSWGTANKEEQEVIPSKGEPDNSWSNGWENKNSGRMELETMKSDWRGDADER------ 1397
Query: 2761 GSNKAQSKPENSSKGS-VSDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKA 2585
N SKP+ SSK S V DA W N ++ GW+S ++ S +KA
Sbjct: 1398 -HNPFSSKPQESSKRSDVWDATPGWGTNTAS--EKVSSSTGWNS----ENISSGAGWSKA 1450
Query: 2584 GTIDA-SKTWSESILGKPSPAWGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWITN 2408
+ ++ +K W+ + + GWS GS + + K W +
Sbjct: 1451 DSDNSHAKGWNSENISSGA----------GWSKAGSDNSHA-------------KGWKSE 1487
Query: 2407 KKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPSPAWGPVKXXX 2228
+ G+G W + + + S + W ++ N S A G
Sbjct: 1488 NISSGAG---------WSKADSDNSHAKGWNSENISSGAGWSKAGSDNSSHAKG------ 1532
Query: 2227 XXXXXXXXXXXXXXXXNLPQPDDTSKANQWGA-AKSWGGSNATEPASSWGKPAQESSPVQ 2051
N+ SKA+ + AK W N + A W K ++S +
Sbjct: 1533 ------------WNSENISSGAGWSKADSDNSHAKGWNSENISSGAG-WSKAGSDNSHAK 1579
Query: 2050 --NSENLEGPNSWNDKVQPASS--KGWDSSKFNEQGGTKNWESKKIENNTQSTWAQQGGS 1883
NSEN+ W+ SS KGW+S + G W + +N+ W
Sbjct: 1580 GWNSENISSGAGWSKAGSDNSSHAKGWNSENISSGAG---WSKEDSDNSHAKGW------ 1630
Query: 1882 TWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKA 1703
NSE ++ S W+ +N
Sbjct: 1631 ---NSENIS---------------SGAGWSKAGSDNSHAKGW------------------ 1654
Query: 1702 NKDGVSSSQGTQKMDKK---PQSSSWGTQKEENKQQSSWGQKNNDXXXXXXXXSDKTNKD 1532
N + +SS K D +S+ W T + K + KN +K+ K+
Sbjct: 1655 NSENISSGARWSKADSDNTHAKSTDWNTTSDRTKTMT----KNT----WSGWHGEKSEKE 1706
Query: 1531 GVSSSWGTQKTDKKPQSSSWGA-QKEENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKKE 1355
+ S T+ P++S WGA ENN + ++ S +
Sbjct: 1707 DILS---TKSQQDLPRNSDWGAVSNRENNAERAY------------------EFVSKDQP 1745
Query: 1354 DKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXX 1175
++S P + W+ K A + W S + W + N +E
Sbjct: 1746 LPDQVSEPCD-------WD-NKLTPQKAVSGWLSSNDE----GWTKDANSSERKEPTDSP 1793
Query: 1174 XXXXGWDSFKGKKTESSWGQPKKTEEDKA--------SEEDSNNGWDSKKGERK-----T 1034
W+ K+T S Q ++ + E + N W K G K T
Sbjct: 1794 VVYNSWE----KRTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKKSGSFKKNHGET 1849
Query: 1033 QSSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLX 854
WG + + ++N P K
Sbjct: 1850 SGGWGSDSGD--------------------------------------WKIKKNHPGKFP 1871
Query: 853 XXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQ 674
FT + +D+F++EEQD L+ +E M S+RRIMH+SG NDGD + EDQ
Sbjct: 1872 RMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEPTMKSIRRIMHKSGYNDGDPIRPEDQ 1931
Query: 673 TYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHF 497
+++I+NV N+HPDKAAK+G G+D + + +HS F +RC YVVSTDG+ DFSY KCL +
Sbjct: 1932 SFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNL 1991
Query: 496 VKGKYPSVAESFSQKYFRKPRSEGN 422
+K ++P VA+ F KYFRKP+ GN
Sbjct: 1992 IKSRFPDVADEFLDKYFRKPKPGGN 2016
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 202 bits (515), Expect = 6e-49
Identities = 194/808 (24%), Positives = 303/808 (37%), Gaps = 31/808 (3%)
Frame = -2
Query: 2752 KAQSKPENSSKGSVSDAGKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTID 2573
KA K S +V G ++D+G G + W+ + D + +
Sbjct: 1196 KAAEKCHTDSLSTV--VGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMV 1253
Query: 2572 ASKTWSESILGKPS--------PAWGP-PVKDGGWSSLGSKKAESQSEDSKAGAKDAGKE 2420
S T S++ + P W P +D S+LG K E +E D GK+
Sbjct: 1254 RSTTSSDAFVSSPGFDVTEEEMAEWAESPERD---SALGEPKFEDSAEFQNL--HDDGKQ 1308
Query: 2419 WITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGNPSPAWGPV 2240
+N + S G S WG K+ G + +W ++ AW
Sbjct: 1309 SESNWEKSSSWDNGCSGGSEWGVSKSTG--------GESNTESNWEKTTSVEKEDAWS-- 1358
Query: 2239 KXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPASSWGKPAQESS 2060
++SK++ GA WG + A++ P E+
Sbjct: 1359 -----------------GWNTKKDAQESSKSDSGGA---WGIKTKDDDANT--TPNWETR 1396
Query: 2059 PVQNSE---NLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKNWESKKIENNTQSTWAQQG 1889
P Q + P S ++ S K W+ KNW ++ + + W
Sbjct: 1397 PAQMDSIVPEINEPTSDVWGLKSVSEKPWNK---------KNWGTE----SAPAAWGSTD 1443
Query: 1888 GSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLD 1709
W +S + N E + +W SR K N D
Sbjct: 1444 ADAWGSSNKKNSET----------ESDAAAWGSRDKRNS--------------------D 1473
Query: 1708 KANKDGVSSSQGTQKMDKKPQSSSWGTQKEENKQQSSWG--QKNNDXXXXXXXXSDKTNK 1535
+ GV + + + +++WG+ + ++W KNN
Sbjct: 1474 IGSGAGVLGPWNKKSSETESDAAAWGSSGKTKSDAATWSPWDKNN------------MEP 1521
Query: 1534 DGVSSSWGTQ-----KTDKKPQSSSWGAQKEENNQQSSWGQPXXXXXXXXXXXXXXXXGE 1370
D + WG+Q +T+ + +SWG+ + + ++WG
Sbjct: 1522 DSEPAGWGSQGNMKSETETESNGASWGSSGKTKSGAAAWGSC------------------ 1563
Query: 1369 SHKKEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQKQDKSQPS-----WGQSDNK 1205
DK + T N+ ++ G KA + SWG+ + S+ WG D
Sbjct: 1564 -----DKNNMET-NSEPSAWGSQGKKKAETESGPASWGAWDKKISETESGLAGWGNGDKI 1617
Query: 1204 NEDXXXXXXXXXXXGWDSFKGKKTESSWGQPKKTEEDKASEEDSNNGW----DSKKGER- 1040
N + G SWGQP T DK + ED N W ++K GE+
Sbjct: 1618 NSETE--------------SGAAAWGSWGQPSPTAADKDTNEDDGNPWVSLKETKSGEKD 1663
Query: 1039 -KTQSSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPP 863
K +S WG + S +RN P
Sbjct: 1664 EKEKSQWGNPAKKFPSDGS---------------------YGGWSNGGGAEWRGKRNHTP 1702
Query: 862 KLXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPA 683
+ FTA + +D F++EEQ++L++VE +M ++R+IMH SG DG+ +
Sbjct: 1703 R--PPRSEDNLAPMFTATKQRLDSFTSEEQELLSDVEPVMRTLRKIMHMSGYPDGEPISD 1760
Query: 682 EDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCL 506
+D+T+V+E +LN HP+K K+G VDFITV KH+ F RCF+VVSTDG DFSY K L
Sbjct: 1761 DDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDTRCFFVVSTDGAKQDFSYRKSL 1820
Query: 505 QHFVKGKYPSVAESFSQKYFRKPRSEGN 422
+++ KYP AE F KYF+KPR GN
Sbjct: 1821 NNYLMTKYPDRAEEFIDKYFKKPRPSGN 1848
Score = 75.5 bits (184), Expect = 1e-10
Identities = 100/457 (21%), Positives = 158/457 (34%), Gaps = 58/457 (12%)
Frame = -2
Query: 3070 PEQENKAVFEDIVDTCEDSEIL---------GTAGGSSWDASLSAGNGWNT--NKXXXXX 2924
P+ E+ A F+++ D + SE G +GGS W S S G NT N
Sbjct: 1291 PKFEDSAEFQNLHDDGKQSESNWEKSSSWDNGCSGGSEWGVSKSTGGESNTESNWEKTTS 1350
Query: 2923 XXXXXXXXXXXSKQDQPKPEDSSTAGGWGAKKE---------WNTNKSDMGSGLEQDGGW 2771
+K+D + S + G WG K + W T + M S + +
Sbjct: 1351 VEKEDAWSGWNTKKDAQESSKSDSGGAWGIKTKDDDANTTPNWETRPAQMDSIVPEINEP 1410
Query: 2770 SS--WGSNKAQSKPENSSKGSVSDAGKEWTANKIDMGPGLTE-----DGGWSSWGSKKDQ 2612
+S WG KP N A W + D + + ++WGS +D+
Sbjct: 1411 TSDVWGLKSVSEKPWNKKNWGTESAPAAWGSTDADAWGSSNKKNSETESDAAAWGS-RDK 1469
Query: 2611 SQPEASTKAGTI------------DASKTWSESILGKPSPAWGPPVKD--------GGWS 2492
+ + AG + DA+ S + W P K+ GW
Sbjct: 1470 RNSDIGSGAGVLGPWNKKSSETESDAAAWGSSGKTKSDAATWSPWDKNNMEPDSEPAGWG 1529
Query: 2491 SLGSKKAESQSEDSKAGAKDAGK------EWITNKKNGGSGSAEDGGWSSWGSKKAVSQP 2330
S G+ K+E+++E + A +GK W + KN ++E W S G KKA ++
Sbjct: 1530 SQGNMKSETETESNGASWGSSGKTKSGAAAWGSCDKNNMETNSEPSAWGSQGKKKAETE- 1588
Query: 2329 EASFKSGGKDASKSWGE-----SKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQP 2165
SWG S+ + WG
Sbjct: 1589 ---------SGPASWGAWDKKISETESGLAGWG-------------------------NG 1614
Query: 2164 DDTSKANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKG 1985
D + + GAA +WG SWG+P+ ++ +E + N W + S G
Sbjct: 1615 DKINSETESGAA-AWG---------SWGQPSPTAADKDTNE--DDGNPWVSLKETKS--G 1660
Query: 1984 WDSSKFNEQGGTKNWESKKIENNTQSTWAQQGGSTWK 1874
K Q G N K + + W+ GG+ W+
Sbjct: 1661 EKDEKEKSQWG--NPAKKFPSDGSYGGWSNGGGAEWR 1695
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 201 bits (511), Expect = 2e-48
Identities = 184/697 (26%), Positives = 280/697 (40%), Gaps = 29/697 (4%)
Frame = -2
Query: 2425 KEWITNKKNGGSGSAE-------DGGWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPG 2267
+ W+ NK+ + +E + W G+ ++ +P + +++ G +WG+S
Sbjct: 1303 QSWLENKQENANWDSEADCRKSSEDKWEKLGT--SLEKPSSGWRTEG-----AWGKSSDD 1355
Query: 2266 NPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPASS 2087
A P + K + WG SWG S+ + +
Sbjct: 1356 KLEKAGSPSR----------------------------KPSGWGTEASWGESSC-DKWEN 1386
Query: 2086 WGKPAQESSPVQNSENLEGPNSWNDK---VQPAS--SKGWDS-SKFNEQGGTKNWESKKI 1925
G PA +S +E G S+ DK V PA+ S GW S + + + G +
Sbjct: 1387 VGSPAAKSFSEWGTEASWG-KSFGDKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGS 1445
Query: 1924 ENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXX 1745
+ S W + S K+SE+ + SW+ +
Sbjct: 1446 ASKPLSGWGAKA-SWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVT---------- 1494
Query: 1744 XXXXXXXXXGLDK--ANKDGVSSSQGTQKMDKKPQSSSWGTQKEENKQQSSWGQKNNDXX 1571
L+K A + S GT+ D +SS W K+ +SWG+ ++
Sbjct: 1495 ----------LEKVAAPAENPLSGWGTEAQDSG-KSSDWSEWKDHANATASWGRNGSE-- 1541
Query: 1570 XXXXXXSDKTNKDGVSSSWGTQKTDK--------KPQSSSWGAQKEENNQQSSWGQPXXX 1415
+ + +SW T+ DK + SS WGA+++ + + W
Sbjct: 1542 --------ENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTK--GW------ 1585
Query: 1414 XXXXXXXXXXXXXGESHKKEDKTELSTPNNSSA-SAGGWNVGKAHGDVASNSWGSQKQDK 1238
ED ++ S S GGWNV A G + WG QK +
Sbjct: 1586 -------------------EDSSKPSANEKSIVHQIGGWNVPDAKG-TDDSCWGKQKLTE 1625
Query: 1237 SQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTESSWGQPKKTEEDKASEEDSNNGWD 1058
+ K D +SSWG+ K TE + + + S+N WD
Sbjct: 1626 NA--------KGTD---------------------DSSWGKQKHTENE-SPQPASSNAWD 1655
Query: 1057 ---SKKGERKTQSSWGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXX 887
+ G WGQS E P K
Sbjct: 1656 LPDATGGSETEMQVWGQSRKE----PFKKNRGWASSSGEWKG------------------ 1693
Query: 886 XSRRNRPPKLXXXXXXXXXXXP-FTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSG 710
++NRPP+ +T + +D+F++EEQD+L+ VE IM S+RRIMHQSG
Sbjct: 1694 --KKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSG 1751
Query: 709 LNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQD 533
NDGD L A+D++++ +NV N+HPDKA K+G G+D V KH F +RC +VVSTDG
Sbjct: 1752 YNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQ 1811
Query: 532 TDFSYIKCLQHFVKGKYPSVAESFSQKYFRKPRSEGN 422
DFSY KCL+ F++GKYP + + F KYFR+PRS GN
Sbjct: 1812 QDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSGGN 1848
Score = 60.8 bits (146), Expect = 3e-06
Identities = 103/508 (20%), Positives = 158/508 (31%), Gaps = 85/508 (16%)
Frame = -2
Query: 3046 FEDIVDTCEDSEILGTAGGSSWDASLSAGNG------WNTNKXXXXXXXXXXXXXXXXSK 2885
FE + C + SW ++ G G W T
Sbjct: 1195 FEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMV 1254
Query: 2884 QDQPKPEDSSTAG------------GWGAKKEWNT-NKSDMGSGLEQDGGWSSWGSNKAQ 2744
+ E+S T W E N + + L +D W +
Sbjct: 1255 RSSTGIEESDTGCLGEEVDGLEDEFDWSLSPEHNLCSDKPVFEDLVEDQSW-------LE 1307
Query: 2743 SKPENSSKGSVSDAGKEWTANKIDMGPGLTE-DGGW---SSWGSKKDQSQPEA---STKA 2585
+K EN++ S +D K +G L + GW +WG D +A S K
Sbjct: 1308 NKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKP 1367
Query: 2584 GTIDASKTWSESILGKPSPAWGPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWITNK 2405
+W ES K W ++GS A+S SE + GK +
Sbjct: 1368 SGWGTEASWGESSCDK-------------WENVGSPAAKSFSEWGTEAS--WGKSFGDKP 1412
Query: 2404 KNGGSGSAEDGGW---SSWGSKKAVSQP----EASFKSGGKDASKSWGESKP-------- 2270
+N + GW +SWG Q AS G A SWG+S
Sbjct: 1413 ENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVET 1472
Query: 2269 --GNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNL----PQPDDTSKANQW-------GAA 2129
PS AWG L + D+ K++ W A
Sbjct: 1473 TVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANAT 1532
Query: 2128 KSWGGSNATEPASSWGKPA-----------QESSPVQNSENLEG------PNSWNDKVQP 2000
SW G N +E S W A S V+NS ++ G W D +P
Sbjct: 1533 ASW-GRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKP 1591
Query: 1999 ASSK--------GWDSSKFNEQGGTKN--WESKKIENNTQ----STWAQQGGSTWKNSEE 1862
++++ GW+ + GT + W +K+ N + S+W +Q + ++ +
Sbjct: 1592 SANEKSIVHQIGGWN---VPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQP 1648
Query: 1861 VNXXXXXXXXXXXXGEDSSQSWNSRKKE 1778
+ E Q W +KE
Sbjct: 1649 ASSNAWDLPDATGGSETEMQVWGQSRKE 1676
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 198 bits (503), Expect = 1e-47
Identities = 169/624 (27%), Positives = 256/624 (41%), Gaps = 46/624 (7%)
Frame = -2
Query: 2155 SKANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDS 1976
S ++WG +K+ GG P S+W K N E + +SWN K S DS
Sbjct: 1324 SGGSEWGVSKNTGGE--ANPESNWEKTT-------NVEKEDAWSSWNTKKDAQESSKSDS 1374
Query: 1975 -------SKFNEQGGTKNWESKKI-------ENN--TQSTWAQQGGSTWKNSEEVNXXXX 1844
+K ++ T NWE++ ENN T W + GS K+ ++ N
Sbjct: 1375 GVAWGLKTKDDDADTTPNWETRPAQTDSIVPENNEPTSDVWGHKSGSD-KSWDKKNGGT- 1432
Query: 1843 XXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGVSSSQGTQK 1664
E + +W S V S +
Sbjct: 1433 ---------ESAPAAWGSTDA-----------------------------AVWGSSDKKN 1454
Query: 1663 MDKKPQSSSWGTQKEENKQQSS-------WGQKNN--DXXXXXXXXSDKTNKDGVS-SSW 1514
+ + +++WG++ ++N + S W +K++ + SDKT + SSW
Sbjct: 1455 SETESDAAAWGSRDKKNSEVGSGAGVLGPWNKKSSKTESDGATWGSSDKTKSGAAAWSSW 1514
Query: 1513 GTQKTDKKPQSSSWGAQK----EENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKKEDKT 1346
+ + + ++WG+Q E + S+WG + KK +T
Sbjct: 1515 DKKNMETDSEPAAWGSQSKNKPETESGPSTWGAWDTKKSETESGPAGWGIVD--KKNSET 1572
Query: 1345 ELSTPNNSSASAGGWNVGKAHGDVASNSWGSQKQDKSQPSWGQSDNKNEDXXXXXXXXXX 1166
E + A+ G W+ K++ + +WGS WG SD N +
Sbjct: 1573 E-----SGPAAMGNWDKKKSNTESGPAAWGST----DAAVWGFSDKNNSETESDAAA--- 1620
Query: 1165 XGWDSFKGKKTES--------SWGQPKKTEEDKASEEDSNNGWDSKKGER------KTQS 1028
W S K +E+ SWGQP T ++ + ED N W S K + K +
Sbjct: 1621 --WGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRDKDDKERI 1678
Query: 1027 SWGQSNNE-DSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXX 851
WG + SSG +RN P+
Sbjct: 1679 QWGNPAKKFPSSG-------------------------GWSNGGGADWKGKRNHTPR--P 1711
Query: 850 XXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQT 671
FTA + +D F++EEQ++L++VE +M ++R+IMH S DGD + +D+T
Sbjct: 1712 PRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKT 1771
Query: 670 YVIENVLNHHPDKAAKIGGGVDFITVKKHSKFG-NRCFYVVSTDGQDTDFSYIKCLQHFV 494
+V+E +LN HP K K+G GVDFITV KH+ F +RCF+VVSTDG DFSY K L +++
Sbjct: 1772 FVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYL 1831
Query: 493 KGKYPSVAESFSQKYFRKPRSEGN 422
KYP AE F KYF KPR GN
Sbjct: 1832 MMKYPDRAEEFIDKYFTKPRPSGN 1855
Score = 62.0 bits (149), Expect = 2e-06
Identities = 86/396 (21%), Positives = 139/396 (35%), Gaps = 28/396 (7%)
Frame = -2
Query: 2881 DQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSSKGSVSDA 2702
D+ KP +S+ W W+ S G S WG +K N+ + ++
Sbjct: 1304 DEGKPSESN----WEKSSSWDNGCS----------GGSEWGVSK------NTGGEANPES 1343
Query: 2701 GKEWTANKIDMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTIDASKTWSESILGKPSPAW 2522
E T N + ++ WSSW +KKD +Q + + +G KT + P+
Sbjct: 1344 NWEKTTN-------VEKEDAWSSWNTKKD-AQESSKSDSGVAWGLKTKDDDADTTPNWET 1395
Query: 2521 GPPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGSGSAEDGGWSSWGSKKA 2342
P D S E+ S +G + +KKNGG+ SA ++WGS A
Sbjct: 1396 RPAQTD-------SIVPENNEPTSDVWGHKSGSDKSWDKKNGGTESAP----AAWGSTDA 1444
Query: 2341 VSQPEASFKSGGKDA-SKSWGESKPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQP 2165
+ K+ ++ + +WG N G P
Sbjct: 1445 AVWGSSDKKNSETESDAAAWGSRDKKNSEVGSGAGVLG-------------------PWN 1485
Query: 2164 DDTSKANQWGAAKSWGGSNATEPA----SSWGKPAQESSPVQNSENLEGPNSWNDKVQPA 1997
+SK GA +WG S+ T+ SSW K E+ + + N + P+
Sbjct: 1486 KKSSKTESDGA--TWGSSDKTKSGAAAWSSWDKKNMETDSEPAAWGSQSKNKPETESGPS 1543
Query: 1996 SSKGWDSSKFNEQGGTK--------------------NWESKKIENNTQS---TWAQQGG 1886
+ WD+ K + G NW+ KK +NT+S W
Sbjct: 1544 TWGAWDTKKSETESGPAGWGIVDKKNSETESGPAAMGNWDKKK--SNTESGPAAWGSTDA 1601
Query: 1885 STWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKE 1778
+ W S++ N E + +W SR K+
Sbjct: 1602 AVWGFSDKNN----------SETESDAAAWGSRDKK 1627
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 196 bits (499), Expect = 4e-47
Identities = 188/700 (26%), Positives = 264/700 (37%), Gaps = 38/700 (5%)
Frame = -2
Query: 2419 WITNKKNGGSGSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSWGES---KPGNPSPAW 2249
W +NK + WS WG K+ Q + + K S +WG + K + AW
Sbjct: 1412 WDSNKDQIDQPNTNSNDWSGWGPNKSDLQVDVIQEDSSK--SSAWGAATNQKSDQSASAW 1469
Query: 2248 GPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAK-------SWGGSN---ATE 2099
G +D+SK+ WG A SWG + + +
Sbjct: 1470 GKAVVQ----------------------EDSSKSGAWGTATNQNSEQPSWGAATNQKSDQ 1507
Query: 2098 PASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGWDSSKFNEQGGTKNWESKKIEN 1919
AS+WGK VQ + G +W + DSSK T + +
Sbjct: 1508 SASAWGKAV-----VQEDSSKSG--AWGNAKSVVQE---DSSKSGAPANTNH-------S 1550
Query: 1918 NTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQSWNSRKKENRXXXXXXXXXXX 1739
+ QS W Q G + E ++ W +
Sbjct: 1551 SDQSCWGQITGGEERAQGE---------------SGGTKKWKA----------------- 1578
Query: 1738 XXXXXXXGLDKANKDGVSSSQGTQKMDKKPQSSSWGTQKEENKQQSSWGQKNNDXXXXXX 1559
D + +D +S KP+ + E K Q SW +
Sbjct: 1579 ---------DVSQEDSTNSGGWKAWGSSKPEVH----EGESTKVQDSWNSQK------WK 1619
Query: 1558 XXSDKTNKDGV-SSSWGTQKTDKKPQSSSWGAQKEE-------NNQQSSWGQPXXXXXXX 1403
D + KD SS+WG K SSWG +K+E +++ ++W Q
Sbjct: 1620 AGEDVSQKDSQKSSAWGATKPKSNDNRSSWGQKKDEIHVMPEDSSRSNAWEQK------- 1672
Query: 1402 XXXXXXXXXGESHKKEDKTELSTPNNSSASAGGWNVGKAHGDVASNSWGSQKQDKSQPSW 1223
P N S W A VA++SWG K +++P W
Sbjct: 1673 -----------------------PENVKDS---W---VAKVPVANSSWGKAKSPENRP-W 1702
Query: 1222 GQSDNKNE--DXXXXXXXXXXXGWDSFKGKKTESSWGQPKKTEE---DKASEEDS----- 1073
D+KNE + WDS +++SSWG+PK E D +E +S
Sbjct: 1703 ---DSKNEPNNSFGKPNSQENEPWDS--KNESDSSWGKPKSQESQPWDSKNESNSSWGKP 1757
Query: 1072 ----NNGWDSKKGERKTQSS--WGQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXX 911
N+ WDSK +T S W +S DK
Sbjct: 1758 KSQENHPWDSKNESNQTAGSRGWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGG 1817
Query: 910 XXXXXXXXXSRRNRPPKLXXXXXXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMR 731
SR RPP G+ ++++ EEQD++ ++E I+ S+R
Sbjct: 1818 PNAGDWKNRSRPVRPP------------------GQRFELYTPEEQDIMKDIEPIVQSIR 1859
Query: 730 RIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYV 554
RIM G NDGD L EDQ YV+ENV HHPDK K+G GVD + V KHS F +RC YV
Sbjct: 1860 RIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYV 1919
Query: 553 VSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYFRKPR 434
V DG+ DFSY KCL++ V+ KYP AESF KYFRKP+
Sbjct: 1920 VLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQ 1959
Score = 90.9 bits (224), Expect = 3e-15
Identities = 104/419 (24%), Positives = 156/419 (37%), Gaps = 87/419 (20%)
Frame = -2
Query: 2863 DSSTAGGWGAKKEW----NTNKSDMGSGLEQDGGWSSWGSNKAQSK----PENSSKGSVS 2708
+ ST+ GW + K+ NTN +D WS WG NK+ + E+SSK S
Sbjct: 1405 NGSTSNGWDSNKDQIDQPNTNSND----------WSGWGPNKSDLQVDVIQEDSSKSSAW 1454
Query: 2707 DAGKEWTANKIDMGPG---LTEDGGWS-SWGSKKDQSQPEASTKAGTIDAS----KTWSE 2552
A +++ G + ED S +WG+ +Q+ + S A T S W +
Sbjct: 1455 GAATNQKSDQSASAWGKAVVQEDSSKSGAWGTATNQNSEQPSWGAATNQKSDQSASAWGK 1514
Query: 2551 SIL---GKPSPAWG--PPVKDGGWSSLGSKKAESQSEDSKAGAKDAGKEWITNKKNGGS- 2390
+++ S AWG V S G+ + S D + G E ++GG+
Sbjct: 1515 AVVQEDSSKSGAWGNAKSVVQEDSSKSGAPANTNHSSDQSCWGQITGGEERAQGESGGTK 1574
Query: 2389 ---------GSAEDGGWSSWGSKKAVSQPEASFKSGGKDASKSW--GE---SKPGNPSPA 2252
S GGW +WGS K S K S+ W GE K S A
Sbjct: 1575 KWKADVSQEDSTNSGGWKAWGSSKPEVHEGESTKVQDSWNSQKWKAGEDVSQKDSQKSSA 1634
Query: 2251 WGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKAN----------------------QW 2138
WG K P+D+S++N W
Sbjct: 1635 WGATKPKSNDNRSSWGQKKDEIHV---MPEDSSRSNAWEQKPENVKDSWVAKVPVANSSW 1691
Query: 2137 GAAKS-----WGGSN-------------------ATEPASSWGKPAQESSPVQNSENLEG 2030
G AKS W N E SSWGKP + S +S+N E
Sbjct: 1692 GKAKSPENRPWDSKNEPNNSFGKPNSQENEPWDSKNESDSSWGKPKSQESQPWDSKN-ES 1750
Query: 2029 PNSWNDKVQPASSKGWDS-SKFNEQGGTKNWESKKIENNTQS----TWAQQGGSTWKNS 1868
+SW K + + WDS ++ N+ G++ W+S+ N++S W +QG ++K +
Sbjct: 1751 NSSWG-KPKSQENHPWDSKNESNQTAGSRGWDSQVASANSESDKSFQWGKQGRDSFKKN 1808
>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 195 bits (495), Expect = 1e-46
Identities = 159/593 (26%), Positives = 241/593 (40%), Gaps = 19/593 (3%)
Frame = -2
Query: 2161 DTSKANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSENLEGPNSWNDKVQPASSKGW 1982
D++ W K+ G + SSWG E Q+S + E
Sbjct: 1336 DSNGGKDWSVDKNVGTVAVPDVWSSWGT---EKGKTQDSNSAEAQ--------------L 1378
Query: 1981 DSSKFNEQGGTKNWESKKIENNTQSTWAQQGGSTWKNSEEVNXXXXXXXXXXXXGEDSSQ 1802
DS K + + W + NT STW G+T + + GED S
Sbjct: 1379 DSKKSSVLDTSSAWGKNPAKENTTSTW----GTTTASEND--------WCGRGVGEDDSA 1426
Query: 1801 SWNSRKKENRXXXXXXXXXXXXXXXXXXGLDKANKDGV--SSSQGTQKMDKKPQSSSWGT 1628
+ + +K GV +SS ++ +S+WGT
Sbjct: 1427 TLSGKKS-----------------------------GVLNTSSAWATNTAREDAASAWGT 1457
Query: 1627 QKEENKQQSSWGQ---KNNDXXXXXXXXSD-------KTNKDGVSSSWGTQKTDKKPQSS 1478
+ S+WG ND D K++ SS+W T T ++ +S
Sbjct: 1458 NPAKENSTSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSSAWATN-TAREDAAS 1516
Query: 1477 SWGAQKEENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELSTPNNSSASAGG-W 1301
+WG + N S+WG +D LS +S + W
Sbjct: 1517 AWGKHPAKENTTSTWGTTTASENDWCGRGVGH--------DDSASLSGKKSSVLNTSSVW 1568
Query: 1300 NVGKAHGDVASNSWGSQK-QDKSQPSWGQSDNKNEDXXXXXXXXXXXGWDSFKGKKTESS 1124
A D A+++WG ++ + +WG + D W + K E
Sbjct: 1569 ATNTARED-ATSAWGKNPAKENTTSTWGTTTASEND------------WCGREAGKVEPV 1615
Query: 1123 WGQPKKTEEDKASEEDSNNGWDSKKGERKT---QSSWGQSNNEDSSGPDKXXXXXXXXXX 953
QP K ++D AS +GWDS G+ + WGQ + +
Sbjct: 1616 DLQPTKPQDDSASL----SGWDSPTGDGNSGERNHQWGQHRGDQTK-------------- 1657
Query: 952 XXWXXXXXXXXXXXXXXXXXXXXSRRNRPPKLXXXXXXXXXXXP-FTANGKPMDIFSAEE 776
+NRPPK +T + +D+F++EE
Sbjct: 1658 ------KNRFEGARNWVSSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEE 1711
Query: 775 QDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYVIENVLNHHPDKAAKIGGGVDFIT 596
QDVL+ +E +M S+RRIMHQSG NDGD L +DQ++V++NV N+HPDKAAK+G G+D +T
Sbjct: 1712 QDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLT 1771
Query: 595 VKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHFVKGKYPSVAESFSQKYFRK 440
V +H F +RCF+VVSTDG+ DFSY KCL ++++ K+P +AE+F KYF +
Sbjct: 1772 VNRHGSFQDSRCFFVVSTDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYFSR 1824
Score = 71.2 bits (173), Expect = 3e-09
Identities = 80/361 (22%), Positives = 133/361 (36%), Gaps = 67/361 (18%)
Frame = -2
Query: 2866 EDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQSKPENSS-------KGSVS 2708
+DSS K+W+ +K+ +G+ D WSSWG+ K +++ NS+ K SV
Sbjct: 1329 KDSSFHTDSNGGKDWSVDKN-VGTVAVPDV-WSSWGTEKGKTQDSNSAEAQLDSKKSSVL 1386
Query: 2707 DAGKEWTANKI------DMGPGLTEDGGWSSWGSKKDQSQPEASTKAGTIDASKTWSESI 2546
D W N G + W G +D S + K+G ++ S W+ +
Sbjct: 1387 DTSSAWGKNPAKENTTSTWGTTTASENDWCGRGVGEDDSATLSGKKSGVLNTSSAWATNT 1446
Query: 2545 LGK-PSPAWGP-PVKDGGWSSLGSKKA--------ESQSEDS------KAGAKDAGKEWI 2414
+ + AWG P K+ S+ G+ +A E +DS K+ D W
Sbjct: 1447 AREDAASAWGTNPAKENSTSTWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSSAWA 1506
Query: 2413 TNKKNGGSGS------AEDGGWSSWGSKKA---------VSQPEASFKSGGK-------- 2303
TN + S A++ S+WG+ A V +++ SG K
Sbjct: 1507 TNTAREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGVGHDDSASLSGKKSSVLNTSS 1566
Query: 2302 ---------DASKSWGES-KPGNPSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQP-DDT 2156
DA+ +WG++ N + WG +P DD+
Sbjct: 1567 VWATNTAREDATSAWGKNPAKENTTSTWGTTTASENDWCGREAGKVEPVDLQPTKPQDDS 1626
Query: 2155 SKANQWGAAKSWGGSNATEPASSWGKPAQESSPVQNSEN----LEGPNSWNDKVQPASSK 1988
+ + W + G N+ E WG+ + + E + P W +K +P S
Sbjct: 1627 ASLSGWDSPT--GDGNSGERNHQWGQHRGDQTKKNRFEGARNWVSSPGEWKNKNRPPKSP 1684
Query: 1987 G 1985
G
Sbjct: 1685 G 1685
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 194 bits (494), Expect = 2e-46
Identities = 135/441 (30%), Positives = 190/441 (43%), Gaps = 30/441 (6%)
Frame = -2
Query: 1657 KKPQSSSWGTQKEENKQ----------QSSW--GQKNNDXXXXXXXXSDKTNKDGVSSSW 1514
KK + WGT K + ++ Q+ W + + T K W
Sbjct: 1378 KKTEWCDWGTSKSKTQEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGDW 1437
Query: 1513 GTQKTDKKPQSSSWGAQKEENNQQSSWGQPXXXXXXXXXXXXXXXXGESHKKEDKTELST 1334
GT K+ K Q + + WG+ E K D
Sbjct: 1438 GTSKS--KTQDVAAAVTGTMETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWG--LK 1493
Query: 1333 PNNSSASAGGWNVGKAHGDVASNSWGSQKQDKSQPS---------WGQSD---NKNEDXX 1190
N++ + K++G SWG+ ++ +P WG D K D
Sbjct: 1494 KNDTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPDANDALPWSGWGTQDVIPTKTLDDS 1553
Query: 1189 XXXXXXXXXGWDSFKGKKTESSWGQPKKTEEDKASEEDSNNGWDSKKGERKTQSS----W 1022
W+ K + WG D++++ S+NGWD+ G TQS W
Sbjct: 1554 SKSSG-----WEQQKSPECSQGWGSL-----DESNQPASSNGWDTPNGLGSTQSEKQHQW 1603
Query: 1021 GQSNNEDSSGPDKXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXSRRNRPPK-LXXXX 845
GQS D ++N P K
Sbjct: 1604 GQSRGSRRWASDAS---------------------------------KKNHPVKSARVMN 1630
Query: 844 XXXXXXXPFTANGKPMDIFSAEEQDVLAEVESIMLSMRRIMHQSGLNDGDHLPAEDQTYV 665
+TA + +D+F++EEQD+L++VE +M S+R+IMHQSG NDGD L A DQ+++
Sbjct: 1631 DDSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFI 1690
Query: 664 IENVLNHHPDKAAKIGGGVDFITVKKHSKF-GNRCFYVVSTDGQDTDFSYIKCLQHFVKG 488
+ENV HHPDKA K+G GVD++ V KHS F +RCFYVVSTDG+ DFSY KCL +F+KG
Sbjct: 1691 LENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKG 1750
Query: 487 KYPSVAESFSQKYFRKPRSEG 425
KYP +A+ F KYFRKPR G
Sbjct: 1751 KYPDMADVFIAKYFRKPRFGG 1771
Score = 68.2 bits (165), Expect = 2e-08
Identities = 77/362 (21%), Positives = 125/362 (34%), Gaps = 26/362 (7%)
Frame = -2
Query: 3085 EHDRSPEQEN---KAVFEDIVDTCEDSEILGTAGGSSWD--ASLSAGNGWNTNKXXXXXX 2921
E SPE N K VFED D D + SSW+ SL + WN +
Sbjct: 1280 EWSLSPEHSNGLDKPVFEDAADFENDLDF--QPAESSWEKGVSLDKVSSWNVSSAWNKKA 1337
Query: 2920 XXXXXXXXXXSKQDQPKPEDSSTAGGWGAKKEWNTNKSDMGSGLEQDGGWSSWGSNKAQS 2741
+ + S WG K + + + + W WG++K+++
Sbjct: 1338 EDGDKFAAALTSTTK-----QSDWCDWGTSKSKTQDAAAAATSTTKKTEWCDWGTSKSKT 1392
Query: 2740 KPENSSKGSVSDAGK--EWTANKIDMG------PGLTEDGGWSSWGSKKDQSQPEASTKA 2585
+ ++ ++ + +W +K + T+ W WG+ K ++Q A+
Sbjct: 1393 QEVAATVTGTAEQNEWCDWRTSKSKIQVVAAAVTSTTKQSEWGDWGTSKSKTQDVAAAVT 1452
Query: 2584 GTIDASKTWSESILGKPSPAWGPPVKDG-------GWSSLGSKKAESQ-----SEDSKAG 2441
GT++ W + GK P DG S G KK ++Q + K+
Sbjct: 1453 GTMETE--WGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFKSN 1510
Query: 2440 AKDAGKEWITNKKNGGSGSAEDG-GWSSWGSKKAVSQPEASFKSGGKDASKSWGESKPGN 2264
D G W T K A D WS WG++ + P + K S W + K
Sbjct: 1511 GADTGTSWGTMGKESEKPDANDALPWSGWGTQDVI--PTKTLDDSSK--SSGWEQQKSPE 1566
Query: 2263 PSPAWGPVKXXXXXXXXXXXXXXXXXXXNLPQPDDTSKANQWGAAKSWGGSNATEPASSW 2084
S WG +L + + + +N W GS +E W
Sbjct: 1567 CSQGWG----------------------SLDESNQPASSNGWDTPNGL-GSTQSEKQHQW 1603
Query: 2083 GK 2078
G+
Sbjct: 1604 GQ 1605