BLASTX nr result
ID: Achyranthes23_contig00015017
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00015017
(795 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 502 e-140
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 502 e-140
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 502 e-140
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 502 e-140
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 501 e-139
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 500 e-139
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 497 e-138
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 496 e-138
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 481 e-134
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 432 e-119
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 406 e-111
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 373 e-101
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 357 3e-96
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 357 3e-96
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 333 4e-89
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 325 1e-86
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 324 2e-86
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 324 2e-86
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 324 2e-86
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 305 1e-80
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 502 bits (1293), Expect = e-140
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 502 bits (1293), Expect = e-140
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 502 bits (1293), Expect = e-140
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 502 bits (1293), Expect = e-140
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 501 bits (1290), Expect = e-139
Identities = 245/264 (92%), Positives = 255/264 (96%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N + AISVIHGAGGSGKSQALQTL
Sbjct: 602 RARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTL 661
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQG
Sbjct: 662 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQG 721
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNS
Sbjct: 722 YIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNS 781
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 782 KFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 841
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 842 PRVQILLDNDTTMCTKEVLYTALS 865
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 500 bits (1287), Expect = e-139
Identities = 246/264 (93%), Positives = 254/264 (96%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
K LANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 497 bits (1280), Expect = e-138
Identities = 244/264 (92%), Positives = 253/264 (95%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 496 bits (1277), Expect = e-138
Identities = 244/264 (92%), Positives = 253/264 (95%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN NLAISVIHGAGGSGKSQALQTL
Sbjct: 614 RAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTL 673
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQG
Sbjct: 674 LRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQG 733
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNS
Sbjct: 734 YLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNS 793
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITA
Sbjct: 794 KFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITA 853
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILLDNDTTMCTKEVLYT LS
Sbjct: 854 PRVQILLDNDTTMCTKEVLYTALS 877
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 481 bits (1239), Expect = e-134
Identities = 238/264 (90%), Positives = 249/264 (94%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN LAISVIHGAGGSGKSQALQTL
Sbjct: 619 RARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTL 678
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQG
Sbjct: 679 LRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQG 738
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S SRYYINAT RNS
Sbjct: 739 YLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNS 798
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
KFLANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITA
Sbjct: 799 KFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITA 858
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
P+VQILLDNDTTMCTKEVLYT LS
Sbjct: 859 PKVQILLDNDTTMCTKEVLYTALS 882
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 432 bits (1110), Expect = e-119
Identities = 207/264 (78%), Positives = 234/264 (88%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE L +SVIHGAGGSGKSQALQT+
Sbjct: 595 RARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTM 654
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG
Sbjct: 655 LRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQG 714
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN
Sbjct: 715 FLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNV 774
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
K LANKLGVYSSN PL V+YGF+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITA
Sbjct: 775 KELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITA 834
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
P+VQILLD+DTTMC+ EVLYT LS
Sbjct: 835 PKVQILLDSDTTMCSSEVLYTALS 858
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 406 bits (1044), Expect = e-111
Identities = 198/208 (95%), Positives = 203/208 (97%)
Frame = +2
Query: 170 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 349
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 350 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 529
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 530 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 709
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 710 GITAPRVQILLDNDTTMCTKEVLYTELS 793
GITAPRVQILLDNDTTMCTKEVLYT LS
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALS 208
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 373 bits (957), Expect = e-101
Identities = 174/264 (65%), Positives = 223/264 (84%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA++FTSD+KN RTGK L +E+Q+WKE QT+ ++ + +SVIHGAGGSGKS ALQ L
Sbjct: 689 RAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDL 748
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I DDYGKLPQG
Sbjct: 749 LRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQG 808
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYYINATHRN+
Sbjct: 809 YVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNA 868
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
K LAN LGVYS N+ LK+T+GFQP +HLLVPSL+KKAAF++AGHK STYAGCQGITA
Sbjct: 869 KKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITA 928
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
++QILLD++T MC++EVLYT LS
Sbjct: 929 RKLQILLDSNTPMCSQEVLYTALS 952
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 357 bits (915), Expect = 3e-96
Identities = 173/264 (65%), Positives = 207/264 (78%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RAR++TSD+KN RTG L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q L
Sbjct: 621 RARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQEL 680
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP G
Sbjct: 681 LRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAG 740
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN
Sbjct: 741 YIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNK 800
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
+ LANKL VYS K+T GFQP +HLLVPSL+KK+A+ + GHKVSTYAGCQGITA
Sbjct: 801 RDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITA 860
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
P++QILLDNDT MC+KEVLYT LS
Sbjct: 861 PKIQILLDNDTVMCSKEVLYTALS 884
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 357 bits (915), Expect = 3e-96
Identities = 173/264 (65%), Positives = 207/264 (78%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RAR++TSD+KN RTG L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q L
Sbjct: 621 RARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQEL 680
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
LRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP G
Sbjct: 681 LRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAG 740
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN
Sbjct: 741 YIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNK 800
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
+ LANKL VYS K+T GFQP +HLLVPSL+KK+A+ + GHKVSTYAGCQGITA
Sbjct: 801 RDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITA 860
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
P++QILLDNDT MC+KEVLYT LS
Sbjct: 861 PKIQILLDNDTVMCSKEVLYTALS 884
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 333 bits (854), Expect = 4e-89
Identities = 164/264 (62%), Positives = 202/264 (76%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RARA+TSDVKN R G L ++ + W L E LAISVIHGAGGSGKSQALQTL
Sbjct: 776 RARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVIHGAGGSGKSQALQTL 835
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
++ NP+L I VVLPTNELRLDWL+KLP P E+F+TFE+A + +P+VIFDDYGKLP G
Sbjct: 836 IKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPPTPIVIFDDYGKLPAG 895
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
Y+EAF + ++++L+ILTGD +QS HHE+NE A S + P SEL RYYINATHRN
Sbjct: 896 YVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEASELCRYYINATHRNK 955
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
K LANKLGVYS + +VT+G P PG+H+LVPSL KK AF++ GHKVSTYAGCQGITA
Sbjct: 956 KDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEMGHKVSTYAGCQGITA 1015
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
P++QILL +T++C++EVLYT LS
Sbjct: 1016 PKIQILLTEETSLCSREVLYTALS 1039
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 325 bits (833), Expect = 1e-86
Identities = 161/264 (60%), Positives = 197/264 (74%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+A++SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ
Sbjct: 770 RAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMY 829
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP G
Sbjct: 830 LKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAG 889
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIEAF+ +S+EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN
Sbjct: 890 YIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNK 949
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
+ LANKLGVYS + +T G P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TA
Sbjct: 950 RDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTA 1009
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILL +T+MC++EV+YT LS
Sbjct: 1010 PRVQILLSEETSMCSREVIYTALS 1033
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 324 bits (831), Expect = 2e-86
Identities = 160/264 (60%), Positives = 196/264 (74%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+A++SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ
Sbjct: 770 RAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMY 829
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP G
Sbjct: 830 LKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAG 889
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIE+F+ +S EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN
Sbjct: 890 YIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNK 949
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
+ LANKLGVYS + +T G P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TA
Sbjct: 950 RDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTA 1009
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILL +T+MC++EV+YT LS
Sbjct: 1010 PRVQILLSEETSMCSREVIYTALS 1033
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 324 bits (831), Expect = 2e-86
Identities = 160/264 (60%), Positives = 196/264 (74%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+A++SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ
Sbjct: 770 RAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMY 829
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP G
Sbjct: 830 LKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAG 889
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIE+F+ +S EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN
Sbjct: 890 YIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNK 949
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
+ LANKLGVYS + +T G P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TA
Sbjct: 950 RDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHKVSTYAGCQGLTA 1009
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILL +T+MC++EV+YT LS
Sbjct: 1010 PRVQILLSEETSMCSREVIYTALS 1033
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 324 bits (830), Expect = 2e-86
Identities = 160/264 (60%), Positives = 195/264 (73%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTL 181
RA+A++SDVKNSR G L ++ + W L EN LAISVIHGAGGSGKS+ALQ
Sbjct: 770 RAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMY 829
Query: 182 LRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQG 361
L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A + P VIFDDYGKLP G
Sbjct: 830 LKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAG 889
Query: 362 YIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNS 541
YIEAF+ +S EL++LTGD +QS HHE+NE A+ S + P T + SRYYINATHRN
Sbjct: 890 YIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNK 949
Query: 542 KFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITA 721
+ LANKLGVYS + +T G P PG+HLLVPSL KK AF++ GHK STYAGCQG+TA
Sbjct: 950 RDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTA 1009
Query: 722 PRVQILLDNDTTMCTKEVLYTELS 793
PRVQILL +T+MC++EV+YT LS
Sbjct: 1010 PRVQILLSEETSMCSREVIYTALS 1033
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 305 bits (781), Expect = 1e-80
Identities = 151/265 (56%), Positives = 191/265 (72%), Gaps = 1/265 (0%)
Frame = +2
Query: 2 RARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN-LAISVIHGAGGSGKSQALQT 178
+ RAF SDVKN+RTG ++ WKE T + E+ +A++VIHGAGGSGKSQ LQ
Sbjct: 909 QGRAFASDVKNNRTGSLTTKQPDEWKEAFTRMAESPEQRTVALTVIHGAGGSGKSQLLQR 968
Query: 179 LLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQ 358
L +NP+ I +LPTNELR DWL KLP P +TFERA + + PVVIFDDY KLP
Sbjct: 969 YLMENPECKINTILPTNELRNDWLTKLPKMPLTAIQTFERALISPQKPVVIFDDYSKLPA 1028
Query: 359 GYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRN 538
GYI+AF H ++E ILTGDPRQST HE+NE+A+I+ L+ +T FS+ SRYYINATHRN
Sbjct: 1029 GYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQAMINHLSKSTEHFSQFSRYYINATHRN 1088
Query: 539 SKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGIT 718
+ LA LGVYS + ++ +P+P HLLVPSL+KK ++T+ G+K STYAGCQGIT
Sbjct: 1089 KQDLARFLGVYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGIT 1148
Query: 719 APRVQILLDNDTTMCTKEVLYTELS 793
A RVQ+LLD DTT+C+ +VLYT LS
Sbjct: 1149 ADRVQVLLDTDTTLCSDQVLYTALS 1173