BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00013526
         (2935 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1810   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  1794   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  1791   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  1791   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   1791   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  1786   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  1785   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  1783   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  1783   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  1780   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  1779   0.0  
gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indi...  1777   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  1770   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1769   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1769   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  1769   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  1769   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  1768   0.0  
gb|EOX90745.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  1763   0.0  
gb|EOX90744.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  1763   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 1810 bits (4687), Expect = 0.0
 Identities = 887/978 (90%), Positives = 938/978 (95%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P PAILKPRP+WTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL+R SAWH E+ETGF+TPGDT+V +E+GELL+GTLCKKTLG+S+GSL
Sbjct: 588  KQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATME INETISKAKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LIRAAQE+QLE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIE+QKLDSLKMKK EFD  ++YE D +NW P YML EHV+DLKTIREFRNVF
Sbjct: 888  EDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            DAEVQKLE DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTFKVD+R  SDMHPMEIVE
Sbjct: 948  DAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            AVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L REAFEWVIGE
Sbjct: 1008 AVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L P++SKTKERAKNVQC LEYT LRSVT ATEVWYDPDPMSTIIEEDVD
Sbjct: 1128 KKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVD 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF DD+TCIF D
Sbjct: 1188 FVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+NDEAPKGEL+ +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFDE +GFK E EWMLDTEGVNLLAVMCHE+VD+ RTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 1794 bits (4647), Expect = 0.0
 Identities = 882/978 (90%), Positives = 933/978 (95%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRYLKKS DHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 411  PPPGKTGAKYIIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 470

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 471  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 530

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P PAILKPRP+WTG
Sbjct: 531  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTG 590

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINLIR+SAWH E+E+GF+TPGDT V +ERGELLSGTLCKKTLG+SSGSL
Sbjct: 591  KQVFNLIIPKQINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSL 650

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATME INETISKAKNE
Sbjct: 651  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNE 710

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+AAQEKQLE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 711  VKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 770

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 771  GSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLT 830

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 831  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 890

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMK++EF+  Y+YE D +NW P YML EHV+DLKTIREF+NVF
Sbjct: 891  EDGMDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVF 950

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            DAEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQK FKVD+R  SDMHPMEIVE
Sbjct: 951  DAEVQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVE 1010

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            AVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L REAF+WVIGE
Sbjct: 1011 AVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGE 1070

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1071 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1130

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L  E++KTKE+AKNVQC LEYT LRSVT ATEVWYDPDPMSTIIEEDVD
Sbjct: 1131 KKIKTPSLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVD 1190

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF DD+TCIF D
Sbjct: 1191 FVRSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFND 1250

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+NDEAPKGEL+ +S+EDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1251 DNAEKLILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSG 1310

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            K+NKFDE +GFK E EWMLDTEGVNLLAVMC+EEVD+TRTTSNHLIEV++VLGIEAVR+A
Sbjct: 1311 KINKFDENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRA 1370

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1371 LLDELRVVISFDGSYVNY 1388


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 1791 bits (4638), Expect = 0.0
 Identities = 876/978 (89%), Positives = 929/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            QAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVP PAIL+PRPIWTG
Sbjct: 528  QANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPK INLIRFSAWH ETE+GF+TPGDT V +E+GELLSGTLCKKTLG+S+GSL
Sbjct: 588  KQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATME INETI  AKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML +HVDDLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK+D+R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +E+FEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1128 KKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1188 FVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VDSTRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 1791 bits (4638), Expect = 0.0
 Identities = 876/978 (89%), Positives = 929/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            QAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVP PAIL+PRPIWTG
Sbjct: 528  QANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPK INLIRFSAWH ETE+GF+TPGDT V +E+GELLSGTLCKKTLG+S+GSL
Sbjct: 588  KQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATME INETI  AKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML +HVDDLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK+D+R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +E+FEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1128 KKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1188 FVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VDSTRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 1791 bits (4638), Expect = 0.0
 Identities = 876/978 (89%), Positives = 929/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            QAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVP PAIL+PRPIWTG
Sbjct: 528  QANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPK INLIRFSAWH ETE+GF+TPGDT V +E+GELLSGTLCKKTLG+S+GSL
Sbjct: 588  KQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATME INETI  AKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ AQEK LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIKQAQEKNLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK+EFD  +RYE D +NW P YML +HVDDLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+I TTGDN+WP+PVNLKRL+WNAQKTFK+D+R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +E+FEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1128 KKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1188 FVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFDE +GFK + EWMLDTEGVNLLAVMCHE+VDSTRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 1786 bits (4627), Expect = 0.0
 Identities = 871/978 (89%), Positives = 928/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMN LMWW+DFDGK+P PAILKPRPIWTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINLIRFSAWH ETETGF+TPGDT V +E+GELLSGTLCKK+LG+ SGSL
Sbjct: 588  KQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME INETISKAKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ AQ+K LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML EHVDDLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK+D R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +EAFEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1128 KKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE++ PDKISPWLLRIELNREMM+DKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1188 FVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILRIRI ND+APKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFD+ +GFKA+ EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 1785 bits (4622), Expect = 0.0
 Identities = 870/978 (88%), Positives = 927/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HL+LGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P PAILKPRPIWTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINLIRFSAWH ETETGF+TPGDT V +E+GELLSGTLCKK+LG+ SGSL
Sbjct: 588  KQVFNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME INETISKAKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ A E  LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML EHVDDLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK+D R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +EAFEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1128 KKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE++ PDKISPWLLRIELNREMM+DKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1188 FVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILRIRI ND+APKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFD+ +GFKA+ EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 1783 bits (4618), Expect = 0.0
 Identities = 871/978 (89%), Positives = 928/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 409  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 468

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 469  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 528

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            QAN+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVP PAILKPRPIWTG
Sbjct: 529  QANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTG 588

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPK INLIRFSAWH E+E+GF+TPGDT V +E+GELLSGTLCKKTLG+ +GSL
Sbjct: 589  KQVFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSL 648

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TME INETISKAK+E
Sbjct: 649  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKSE 708

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            V  LI+ AQ+K LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 709  VTELIKQAQDKLLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 768

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGFV RTLPHFTK+DYGPESRGFVENSYLRGLT
Sbjct: 769  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLT 828

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 829  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 888

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIE+QKLDSLKMKK+EFD  YRYE D +NW P YML EHVDDLKTIREFRNVF
Sbjct: 889  EDGMDAVWIETQKLDSLKMKKAEFDNVYRYELDDENWRPTYMLPEHVDDLKTIREFRNVF 948

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+I TTGDNSWP+PVNLKRL+WNAQKTFK+D+R  SDMHPMEIVE
Sbjct: 949  EAEVQKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVE 1008

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +E+FEWVIGE
Sbjct: 1009 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGE 1068

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1128

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSVFL PE+SK KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEED+D
Sbjct: 1129 KKIKTPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDMD 1188

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1189 FVKSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFND 1248

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK  
Sbjct: 1249 DNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYG 1308

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            K+NKFDE  GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1309 KINKFDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRS 1368

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1369 LLDELRVVISFDGSYVNY 1386


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 1783 bits (4617), Expect = 0.0
 Identities = 872/978 (89%), Positives = 927/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVP PAILKPRPIWTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPK INLIRFSAWH E ETGF+TPGDT V +E+GELLSGTLCKKTLG+S+GSL
Sbjct: 588  KQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATME INETIS AKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ A +K LE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFDT +RYE D +NW P+YML EHV+DLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+IATTGDN+WP+PVNLKRL+WNAQKTFK+D+R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +EAFEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1128 KKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE+V PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1188 FVRSYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKF++  GFK + EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR+A
Sbjct: 1308 KVNKFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRA 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 1780 bits (4610), Expect = 0.0
 Identities = 876/978 (89%), Positives = 925/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL R SAWH E E+G +TPGDT V +E+GELL+GTLCKK LG+S+GSL
Sbjct: 588  KQVFNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATME INETISKAKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK+LI  AQ KQLE EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKDLISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKKSEFD T+ YE D +NW PDYML EHV+DLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            DAEVQKLE DR QL T+IA TGDNSWPLPVNLKRL+WNAQKTFK+D R  SDMHPMEIVE
Sbjct: 948  DAEVQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D LS EAQKNATLFF+ILLRST ASKRVL E++L REAFEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            K+IKTPSLSV+L PE +KTKERAKNVQC LEYT LRSVT ATEVWYDPDPMSTIIEEDVD
Sbjct: 1128 KRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVD 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV SYYEMPDEEV+PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEF DD+TCIF D
Sbjct: 1188 FVNSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+N EAPKGEL  +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNAEKLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFD  +GFKAE EWMLDTEGVNLLAV+CH++VD+ RTTSNHLIE++E+LGIEAVR++
Sbjct: 1308 KVNKFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 1779 bits (4608), Expect = 0.0
 Identities = 872/978 (89%), Positives = 925/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 406  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 465

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 466  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 525

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTG
Sbjct: 526  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTG 585

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELLSGTLCKK LG+S+GSL
Sbjct: 586  KQVFNLIIPKQINLQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSL 645

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATME INETISKAKNE
Sbjct: 646  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNE 705

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI  AQ K LEPEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 706  VKELISKAQSKSLEPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTA 765

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 766  GSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 825

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 826  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 885

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFD T+ Y FD +NW PDYML EHV+DLKTIREFRNVF
Sbjct: 886  EDGMDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVF 945

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            DAEV KLE DR QL T+IA TGDNSWPLPVNLKRL+WNAQKTFK+D R  SDMHPMEIVE
Sbjct: 946  DAEVSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVE 1005

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVL+E++L REAFEWVIGE
Sbjct: 1006 AIDKLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGE 1065

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1066 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1125

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            K+IKTPSLSV+L PE +KTKERAKNVQC LEYT LRSVT ATEVWYDPDPMST+IEED+D
Sbjct: 1126 KRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLD 1185

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDEEV+PDKISPWLLRIELNREMMVDKKLSMADIAEKINLEF  D+TCIF D
Sbjct: 1186 FVRSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFND 1245

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+N+E PKG+ + +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1246 DNAEKLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHG 1305

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFD+ +GFKAE EWMLDTEGVNLLAV+CH++VD+ RTTSNHLIE++EVLGIEAVR++
Sbjct: 1306 KVNKFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRS 1365

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1366 LLDELRVVISFDGSYVNY 1383


>gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score = 1777 bits (4602), Expect = 0.0
 Identities = 869/978 (88%), Positives = 927/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 378  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 437

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 438  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 497

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVP PAILKPRPIWTG
Sbjct: 498  QSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTG 557

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPK INLIRFSAWH E ETGF+TPGDT V +E+GELLSGTLCKKTLG+S+GSL
Sbjct: 558  KQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSL 617

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATM  INETISKAK++
Sbjct: 618  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDD 677

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ A +KQLE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 678  VKELIKQAHDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 737

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 738  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 797

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 798  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 857

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML EHVDDLKTIREFRNVF
Sbjct: 858  EDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVF 917

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL ++IATTGDN+WP+PVNLKRL+WNAQKTFK+D+R  SDMHPMEIVE
Sbjct: 918  EAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVE 977

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +EAFEWVIGE
Sbjct: 978  AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1037

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1038 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1097

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L PE++K KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEEDV+
Sbjct: 1098 KKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVE 1157

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FVRSYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1158 FVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFND 1217

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILR+RI NDEAPKGE++ +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1218 DNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYG 1277

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKF++  GFKA+ EWML TEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR+A
Sbjct: 1278 KVNKFEDNVGFKADNEWMLVTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRA 1337

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1338 LLDELRVVISFDGSYVNY 1355


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 1770 bits (4584), Expect = 0.0
 Identities = 878/998 (87%), Positives = 928/998 (92%), Gaps = 20/998 (2%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK--------------------VER 120
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK                    VER
Sbjct: 403  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKARLPILLLLLLFLGPWSGSVVER 462

Query: 121  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 300
            HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS
Sbjct: 463  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 522

Query: 301  FETRAEVLELMMVPKCIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 480
            FETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE
Sbjct: 523  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 582

Query: 481  DFDGKVPQPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVER 660
            DFDGKVP PAILKPRP+WTGKQVFNLIIPKQINL R SAWH E+E+G++TPGDT V +E+
Sbjct: 583  DFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLNRTSAWHAESESGYITPGDTLVRIEK 642

Query: 661  GELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT 840
            GELLSGTLCKKTLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT
Sbjct: 643  GELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT 702

Query: 841  IADAATMEIINETISKAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDA 1020
            IADA+TME INETIS+AKN+VK LIR AQ K+LE EPGRTMMESFEN+VNQVLNKARDDA
Sbjct: 703  IADASTMEKINETISRAKNDVKELIRKAQAKELEAEPGRTMMESFENKVNQVLNKARDDA 762

Query: 1021 GSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTK 1200
            GSSAQ+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTK
Sbjct: 763  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTK 822

Query: 1201 DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 1380
            DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM
Sbjct: 823  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 882

Query: 1381 VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPD 1560
            VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKK+EF+  +RYEFD + W P 
Sbjct: 883  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEFERVFRYEFDNETWNPT 942

Query: 1561 YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 1740
            YML EHV+DLKTIREFRNVFDAEVQKLE DR QL T+IATTGDNSWPLPVNLKRL+ NAQ
Sbjct: 943  YMLPEHVEDLKTIREFRNVFDAEVQKLESDRLQLGTEIATTGDNSWPLPVNLKRLIQNAQ 1002

Query: 1741 KTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLAS 1920
            KTFK+D R  SDMHPMEIVEA+DKLQERLKVVPGED LS EAQKNATLFFNILLRST AS
Sbjct: 1003 KTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS 1062

Query: 1921 KRVLKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 2100
            KRVL+E++L RE FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG
Sbjct: 1063 KRVLEEYRLTREGFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1122

Query: 2101 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTH 2280
            VSAKNVTLGVPRLREIINVAK+IKTPSLSVFL PE SKTKERAK VQC LEYT LRSVT 
Sbjct: 1123 VSAKNVTLGVPRLREIINVAKRIKTPSLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQ 1182

Query: 2281 ATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMA 2460
            ATEVWYDPDPMSTII+EDVDFVRSYYEMPDEE++PDKISPWLLRIELNREMMVDKKLSMA
Sbjct: 1183 ATEVWYDPDPMSTIIDEDVDFVRSYYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMA 1242

Query: 2461 DIAEKINLEFSDDMTCIFTDDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSM 2640
            DIAEKIN+EF DD+TCIF DDNAEKLILRIRI+NDEAPKG+L  ++AEDDVFLKK+  +M
Sbjct: 1243 DIAEKINVEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNM 1302

Query: 2641 LTEMALKGIPDINKVFIKQSKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRT 2820
            LTEM+L+GIPDINKVFIK  KVNKFDE  GFK E EWMLDTEGVNLLAV+CHE+VD+ RT
Sbjct: 1303 LTEMSLRGIPDINKVFIKHGKVNKFDENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRT 1362

Query: 2821 TSNHLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNY 2934
            TSNHLIEV+EVLGIEAVR++LLDELRVVISFDGSYVNY
Sbjct: 1363 TSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNY 1400


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1769 bits (4583), Expect = 0.0
 Identities = 871/978 (89%), Positives = 926/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P PAILKP+P+WTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELLSGTLCKK LG+S+GSL
Sbjct: 588  KQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATME INETIS AKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VKNLI+ AQE+ LEPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EF+  +RYEF+ +NW+P+YML EHV+DLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+IATTG+NSWP+PVNLKRL+ NAQKTFK+D R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL E++L REAFEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            K+IKTPSLSV+L PE +KTKERAK VQC LEYT LRSVT ATEVWYDPDPMSTIIEED+D
Sbjct: 1128 KRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDID 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDEE++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEF DD+TCIF D
Sbjct: 1188 FVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+NDEAPKGEL  +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFDE +GFK E EWMLDTEGVNLLAVM HE+VD+ RTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1769 bits (4583), Expect = 0.0
 Identities = 871/978 (89%), Positives = 926/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P PAILKP+P+WTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL R SAWH E+ETG +TPGDT V +E+GELLSGTLCKK LG+S+GSL
Sbjct: 588  KQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATME INETIS AKNE
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNE 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VKNLI+ AQE+ LEPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EF+  +RYEF+ +NW+P+YML EHV+DLKTIREFRNVF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+IATTG+NSWP+PVNLKRL+ NAQKTFK+D R  SDMHPMEIVE
Sbjct: 948  EAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPGED LS EAQKNATLFFNILLRST ASKRVL E++L REAFEWVIGE
Sbjct: 1008 AIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            K+IKTPSLSV+L PE +KTKERAK VQC LEYT LRSVT ATEVWYDPDPMSTIIEED+D
Sbjct: 1128 KRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDID 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDEE++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEF DD+TCIF D
Sbjct: 1188 FVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+NDEAPKGEL  +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK  
Sbjct: 1248 DNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCG 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVNKFDE +GFK E EWMLDTEGVNLLAVM HE+VD+ RTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 1769 bits (4581), Expect = 0.0
 Identities = 863/978 (88%), Positives = 922/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 407  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 466

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 467  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 526

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P P ILKPRPIWTG
Sbjct: 527  QSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTG 586

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINLIRFSAWH E E GF+TPGDT V +E+GELLSGTLCKK+LG+ SGSL
Sbjct: 587  KQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSL 646

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TME IN+TISKAKN 
Sbjct: 647  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNA 706

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ A EKQLE EPGRTMMESFENRVNQVLNKARDDAGSSAQ SLSESNNLKAMVTA
Sbjct: 707  VKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTA 766

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 767  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 826

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 827  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 886

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML EHVDDLKTIREFRNVF
Sbjct: 887  EDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVF 946

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL ++I TTGDNSWP+PVNLKRL+WNAQKTFK+D R  SDMHPMEIVE
Sbjct: 947  EAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVE 1006

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            A+DKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +EAFEWVIGE
Sbjct: 1007 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1066

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1067 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1126

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L P++++ KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEED +
Sbjct: 1127 KKIKTPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTE 1186

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD++CIF D
Sbjct: 1187 FVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFND 1246

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILRIRI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK+ 
Sbjct: 1247 DNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEG 1306

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVN F ++ GFKA  EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1307 KVNTFYQDDGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRS 1366

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1367 LLDELRVVISFDGSYVNY 1384


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 1769 bits (4581), Expect = 0.0
 Identities = 862/978 (88%), Positives = 926/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 407  PPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMS 466

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 467  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 526

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P PAILKPRPIWTG
Sbjct: 527  QSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTG 586

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINLIRFSAWH E E GF+TPGDT V +E+GELLSGTLCKK+LG+ +GSL
Sbjct: 587  KQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSL 646

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IH+IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TM+ IN+TI KAK+E
Sbjct: 647  IHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDE 706

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LI+ A EKQLE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 707  VKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 766

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 767  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 826

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 827  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 886

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKK EFD  +RYE D +NW P+YML EHVDDLKTIREFRNVF
Sbjct: 887  EDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVF 946

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            +AEVQKLE DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTF++D R  SDMHPMEIVE
Sbjct: 947  EAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVE 1006

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            AVDKLQERLKVVPG+D +S EAQKNATLFFNILLRST ASKRVLKE++L +EAFEWVIGE
Sbjct: 1007 AVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1066

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1067 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1126

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLSV+L PE+++ KE AKNVQC LEYT LRSVTHATE+WYDPDP+ TIIEED +
Sbjct: 1127 KKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAE 1186

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDE++ PDKISPWLLRIELNREMMVDKKLSMADIA+KIN EF DD++CIF D
Sbjct: 1187 FVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFND 1246

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNA+KLILRIRI NDEAPKGE++ +SAEDDVFLKK+ G+MLTEMAL+GIPDINKVFIK+ 
Sbjct: 1247 DNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEG 1306

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KVN F +++GFKA  EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR++
Sbjct: 1307 KVNTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRS 1366

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1367 LLDELRVVISFDGSYVNY 1384


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 1768 bits (4580), Expect = 0.0
 Identities = 870/978 (88%), Positives = 926/978 (94%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 408  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 467

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 468  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTG
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTG 587

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINLIR +AWH ++E G +TPGDT V +E+GELLSGT+CKKTLG+S+GSL
Sbjct: 588  KQVFNLIIPKQINLIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSL 647

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATME INETIS AKN 
Sbjct: 648  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNA 707

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VK LIR AQ K+LEP+PGRTMMESFEN VNQVLN+ARDDAGSSAQ+SLSESNNLKAMVTA
Sbjct: 708  VKELIRKAQNKELEPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTA 767

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 768  GSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 827

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 828  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 887

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVF 1620
            EDGMD+VWIESQKLDSLKMKKSEFD  ++YE D +NW P YM ++H+DDLK IRE R+VF
Sbjct: 888  EDGMDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVF 947

Query: 1621 DAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIVE 1800
            DAEVQKLE DR QL T+IATTGD+SWPLPVNL+RL+WNAQKTFKVD R  SD+HPME VE
Sbjct: 948  DAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVE 1007

Query: 1801 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGE 1980
            AVDKLQERLKVVPG+D LS EAQKNATLFF ILLRSTLASKRVL++++L REAF+WVIGE
Sbjct: 1008 AVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGE 1067

Query: 1981 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 2160
            IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 2161 KKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVD 2340
            KKIKTPSLS+FL PE +KTKERAKNVQC LEYT LRSVT ATEVWYDPDPMSTIIEEDVD
Sbjct: 1128 KKIKTPSLSIFLIPECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVD 1187

Query: 2341 FVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTD 2520
            FV+SYYEMPDEE+SP+KISPWLLRIELNREMMVDKKL+MADIAEKINLEF DD+TCIF D
Sbjct: 1188 FVKSYYEMPDEEISPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFND 1247

Query: 2521 DNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQS 2700
            DNAEKLILRIRI+NDEAPKGEL  +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIKQS
Sbjct: 1248 DNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQS 1307

Query: 2701 KVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKA 2880
            KV+KFDE +GFK   EWMLDTEGVNLLAVMC+E VD+ RTTSNHLIEV+EVLGIEAVR++
Sbjct: 1308 KVSKFDENEGFKTIEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRS 1367

Query: 2881 LLDELRVVISFDGSYVNY 2934
            LLDELRVVISFDGSYVNY
Sbjct: 1368 LLDELRVVISFDGSYVNY 1385


>gb|EOX90745.1| DNA-directed RNA polymerase II subunit RPB1 isoform 5 [Theobroma
            cacao]
          Length = 1512

 Score = 1763 bits (4566), Expect = 0.0
 Identities = 868/979 (88%), Positives = 926/979 (94%), Gaps = 1/979 (0%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 58   PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 117

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 118  IMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 177

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTG
Sbjct: 178  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTG 237

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL+R SAWH ETETGF+TPGDT+V +E+GELLSGTLCKK LG+SSGSL
Sbjct: 238  KQVFNLIIPKQINLLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSL 297

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATME INETISKAK E
Sbjct: 298  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEE 357

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VKNLI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ+SLSESNNLKAMVTA
Sbjct: 358  VKNLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTA 417

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 418  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 477

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 478  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 537

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEP-DYMLKEHVDDLKTIREFRNV 1617
            EDGMDSVWIESQKLDSLKMKKSEFD  +RY  D ++W P  YML EH++DL+TI+E R+V
Sbjct: 538  EDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDV 597

Query: 1618 FDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIV 1797
            F+AEVQKL+ DR QL T+IA TGD++WPLPVNLKRL+WNAQKTFKVD R  SD+HP+EIV
Sbjct: 598  FEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIV 657

Query: 1798 EAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIG 1977
            ++VDKLQERLKVVPG D LS EAQKNATLFF+ILLRSTLASKRVL+E++L +EAFEWVIG
Sbjct: 658  DSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIG 717

Query: 1978 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2157
            EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 718  EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 777

Query: 2158 AKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDV 2337
            AKKIKTPSLSV+L+PE SKTKE+AKNVQC LEYT LRSVTHATEVWYDPDP STIIEED+
Sbjct: 778  AKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDI 837

Query: 2338 DFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFT 2517
            DFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF DD+TCIF 
Sbjct: 838  DFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 897

Query: 2518 DDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQ 2697
            DDNAEKLILRIRI+NDE PKGEL  +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK 
Sbjct: 898  DDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKH 957

Query: 2698 SKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRK 2877
            SK +KFDE  G+K   EW+LDTEGVNLLAVMCHE+VD+ RTTSNHLIEV+EVLGIEAVR+
Sbjct: 958  SKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR 1017

Query: 2878 ALLDELRVVISFDGSYVNY 2934
            +LLDELRVVISFDGSYVNY
Sbjct: 1018 SLLDELRVVISFDGSYVNY 1036


>gb|EOX90744.1| DNA-directed RNA polymerase II subunit RPB1 isoform 4 [Theobroma
            cacao]
          Length = 1511

 Score = 1763 bits (4566), Expect = 0.0
 Identities = 868/979 (88%), Positives = 926/979 (94%), Gaps = 1/979 (0%)
 Frame = +1

Query: 1    PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 180
            PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS
Sbjct: 58   PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 117

Query: 181  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 360
            IMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP
Sbjct: 118  IMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 177

Query: 361  QANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTG 540
            Q+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PAILKPRP+WTG
Sbjct: 178  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTG 237

Query: 541  KQVFNLIIPKQINLIRFSAWHQETETGFLTPGDTRVLVERGELLSGTLCKKTLGSSSGSL 720
            KQVFNLIIPKQINL+R SAWH ETETGF+TPGDT+V +E+GELLSGTLCKK LG+SSGSL
Sbjct: 238  KQVFNLIIPKQINLLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSL 297

Query: 721  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNE 900
            IHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATME INETISKAK E
Sbjct: 298  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEE 357

Query: 901  VKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTA 1080
            VKNLI  AQ K LEPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ+SLSESNNLKAMVTA
Sbjct: 358  VKNLIVKAQNKDLEPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTA 417

Query: 1081 GSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLT 1260
            GSKGSFINISQMTACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLT
Sbjct: 418  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 477

Query: 1261 PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 1440
            PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG
Sbjct: 478  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 537

Query: 1441 EDGMDSVWIESQKLDSLKMKKSEFDTTYRYEFDADNWEP-DYMLKEHVDDLKTIREFRNV 1617
            EDGMDSVWIESQKLDSLKMKKSEFD  +RY  D ++W P  YML EH++DL+TI+E R+V
Sbjct: 538  EDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDV 597

Query: 1618 FDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSDMHPMEIV 1797
            F+AEVQKL+ DR QL T+IA TGD++WPLPVNLKRL+WNAQKTFKVD R  SD+HP+EIV
Sbjct: 598  FEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIV 657

Query: 1798 EAVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIG 1977
            ++VDKLQERLKVVPG D LS EAQKNATLFF+ILLRSTLASKRVL+E++L +EAFEWVIG
Sbjct: 658  DSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIG 717

Query: 1978 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 2157
            EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV
Sbjct: 718  EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 777

Query: 2158 AKKIKTPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDV 2337
            AKKIKTPSLSV+L+PE SKTKE+AKNVQC LEYT LRSVTHATEVWYDPDP STIIEED+
Sbjct: 778  AKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDI 837

Query: 2338 DFVRSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFT 2517
            DFV+SYYEMPDEEV+P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEF DD+TCIF 
Sbjct: 838  DFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFN 897

Query: 2518 DDNAEKLILRIRIVNDEAPKGELEGDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQ 2697
            DDNAEKLILRIRI+NDE PKGEL  +SAEDDVFLKK+  +MLTEMAL+GIPDINKVFIK 
Sbjct: 898  DDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKH 957

Query: 2698 SKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRK 2877
            SK +KFDE  G+K   EW+LDTEGVNLLAVMCHE+VD+ RTTSNHLIEV+EVLGIEAVR+
Sbjct: 958  SKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR 1017

Query: 2878 ALLDELRVVISFDGSYVNY 2934
            +LLDELRVVISFDGSYVNY
Sbjct: 1018 SLLDELRVVISFDGSYVNY 1036