BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00009824
         (837 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   273   6e-71
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   259   6e-67
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   248   2e-63
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                246   7e-63
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   244   3e-62
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   243   5e-62
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   239   1e-60
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   236   7e-60
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   236   7e-60
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   235   1e-59
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               235   2e-59
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   234   2e-59
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   230   5e-58
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   229   1e-57
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           229   1e-57
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   226   6e-57
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               226   1e-56
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   225   2e-56
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   224   3e-56
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   223   5e-56

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  273 bits (698), Expect = 6e-71
 Identities = 125/277 (45%), Positives = 184/277 (66%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK+SW  + +++   +++FF++S + + +NC  +TL+PKVQ+ + V EFRPIACC +IY
Sbjct: 465  FFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIY 524

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+K++ +R+K ++  +++  QSGF+ GR I  N+ +  +LI  Y RK   P C++KVD
Sbjct: 525  KIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVD 584

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            IRKAYDSV+W FL+ +L    FP RF+ W+M+CV+T SYS+  NG     F  ++GLRQG
Sbjct: 585  IRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQG 644

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DPMSPFLF +CMEYL+R L       D+ FH +C+ L + HL FADDL++FC+ D  S+ 
Sbjct: 645  DPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLD 704

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEV 832
                A   F+ ASGL A+  K   Y C +D +   E+
Sbjct: 705  HMNVAFQKFSHASGLAASHEKSNIYFCGVDDETAREL 741


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  259 bits (663), Expect = 6e-67
 Identities = 121/253 (47%), Positives = 175/253 (69%)
 Frame = +2

Query: 2   FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
           FFK SW+I+G  V  A+ DFF    + K +NCT +TL+PK    + V  FRPIACC++IY
Sbjct: 148 FFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIY 207

Query: 182 KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
           K I+KI+ SR++ VL S++S NQS FV+GR I  N+ +  +L+  Y RK   P C++K+D
Sbjct: 208 KIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKID 267

Query: 362 IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
           ++KAY+SV+W F++ ++  + F ++F++WVM C+TTASY+   NG     FA K+GLRQG
Sbjct: 268 LQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQG 327

Query: 542 DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
           DP+SP+LFVICMEYL   L    +   ++FH RCK L L H+CF DDL++F +GD++S+ 
Sbjct: 328 DPISPYLFVICMEYLNICLIQLRKNAAFRFHPRCKRLNLIHVCFVDDLLLFSRGDVDSVS 387

Query: 722 LNLRALATFAAAS 760
               A + F+AAS
Sbjct: 388 QLFEAFSLFSAAS 400


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  248 bits (633), Expect = 2e-63
 Identities = 116/265 (43%), Positives = 172/265 (64%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK+SW ++ +++   + DFF +  + K +NCT +TLIPK+    H  ++RPIACC+ +Y
Sbjct: 468  FFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLY 527

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+KI+  RL+ V+  ++   Q+GF+  R I  N+ +  +LI  Y R+   P C++KVD
Sbjct: 528  KIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVD 587

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            IRKAYDSV+W FL+ +L+ + FP  FI W+M CV T SYS+  NG     F  ++GLRQG
Sbjct: 588  IRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQG 647

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DP+SPFLF + MEYL+R +    +  ++ FH +C+ +KL HL FADDL++F + D  SI 
Sbjct: 648  DPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSIS 707

Query: 722  LNLRALATFAAASGLNANAGKFAFY 796
              + A  +F+ ASGL A+  K   Y
Sbjct: 708  KIMAAFNSFSKASGLQASIEKSCIY 732


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  246 bits (628), Expect = 7e-63
 Identities = 120/278 (43%), Positives = 169/278 (60%)
 Frame = +2

Query: 2   FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
           FFK +W I G+D   A++ FF    L K LN T L LIPK    + + ++RPI+CCN+IY
Sbjct: 53  FFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIY 112

Query: 182 KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
           K I+KII +RLK +LP+ I  NQS FV+ R +I NV +  +L+  Y + +  P C +K+D
Sbjct: 113 KVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKID 172

Query: 362 IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
           I KA+DSV W+FL   LE + FP  F  W+  C++TA++S+  NG   GFF  KRGLRQG
Sbjct: 173 ISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQG 232

Query: 542 DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
             +SP+LFVICM  L+ ++  A   ++  +H +CK L L HLCFADDL++F  G   S+ 
Sbjct: 233 CALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVE 292

Query: 722 LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
             +     FA  SGL+ +  K   Y   +    R  +L
Sbjct: 293 GVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNIL 330


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  244 bits (623), Expect = 3e-62
 Identities = 118/275 (42%), Positives = 172/275 (62%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            F+K SW+I+G +V IA++ FF+   L K +N T L LIPK +    + ++RPI+CCN++Y
Sbjct: 201  FYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLY 260

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+KI+ +RLK +LP  I  NQS FV+ R +I NV +  +L+  Y + +    C +K+D
Sbjct: 261  KAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKID 320

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            I KA+DS+ W FL  +L  M FP  FI W+  C++TAS+S+  NG   G+F   RGLRQG
Sbjct: 321  ISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQG 380

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
              +SP+LFVI M+ L+R+L  A   +++ +H RCK+L L HLCFADDL+I   G + S+ 
Sbjct: 381  CSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVD 440

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVRE 826
              ++ L  FAA  GL     K   Y   +    R+
Sbjct: 441  GIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQ 475


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  243 bits (621), Expect = 5e-62
 Identities = 118/280 (42%), Positives = 175/280 (62%), Gaps = 2/280 (0%)
 Frame = +2

Query: 2    FFKRSWDIVGKDV-CIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNII 178
            FF+++W ++G +V   AV++FFS+  LL ELN T +TL+PKV  P+ +S+FRPI+CCN  
Sbjct: 300  FFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTF 359

Query: 179  YKCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKV 358
            YK I K++ +RLK  L  I+ P+QS F+ GR+I  N+ + Q++I  Y +    P C   V
Sbjct: 360  YKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFMV 419

Query: 359  DIRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQ 538
            D+ KA D+V+W F+   L+    P   I W+  C+++A +S+C NG   GFFA +RGLRQ
Sbjct: 420  DMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQ 479

Query: 539  GDPMSPFLFVICMEYLTRLL-TYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLES 715
            GDP+SP+LFVI ME L+  +         +++H+RC  L L+HLCFADDL++FC GD  S
Sbjct: 480  GDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENS 539

Query: 716  IMLNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
            +     A + F + S L AN  +   +   +D    + VL
Sbjct: 540  VRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVL 579


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  239 bits (609), Expect = 1e-60
 Identities = 116/277 (41%), Positives = 169/277 (61%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK +W+I+G +  +AV+ FF+   L K +N T L LIPK      + ++RPI+CCN++Y
Sbjct: 480  FFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLY 539

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+KII +RLK VLP  I+ NQS FV+ R +I N+ +  +L+  Y +      C +K+D
Sbjct: 540  KVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKID 599

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            I KA+DSV W FL  +   + FP  FI W+  C+TTAS+S+  NG   G+F   RGLRQG
Sbjct: 600  ISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQG 659

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
              +SP+LFVICM+ L+++L  A   + + +H +CK++ L HL FADDL++   G + SI 
Sbjct: 660  CALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIE 719

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEV 832
              ++    FA  SGL  +  K   Y   +    R EV
Sbjct: 720  RIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEV 756


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  236 bits (602), Expect = 7e-60
 Identities = 116/278 (41%), Positives = 174/278 (62%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK++W IVG  +  AV++FF    LL + N T +T++PK      ++EFRPI+CCN IY
Sbjct: 473  FFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIY 532

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+K++  RL+++LP  ISP+QS FV+GR +  NV +  +L+  +G+       +LKVD
Sbjct: 533  KVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVD 592

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            +RKA+DSV W F+ + L+    P RF++W+ QC+T+ S+S+  +GS  G+F G +GLRQG
Sbjct: 593  LRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQG 652

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DP+SP LFVI ME L+RLL          +H +   ++++ L FADDL+IF  G   S+ 
Sbjct: 653  DPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLR 712

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
                 L +F   SGL  N  K A Y+  ++   +E+ L
Sbjct: 713  GIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL 750


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  236 bits (602), Expect = 7e-60
 Identities = 115/278 (41%), Positives = 166/278 (59%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK +W + G D   A++ FF    L K LN T L LIPK      + ++RPI+CCN++Y
Sbjct: 777  FFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLY 836

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+KI+ +RLK +LPS I  NQS FV+ R ++ NV +  +L+  Y +++  P C +K+D
Sbjct: 837  KVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKID 896

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            I KA+DSV W+FL   LE + FP  F  W+  C++TA++S+  NG   GFF   RGLRQG
Sbjct: 897  ISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQG 956

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
              +SP+LFVICM  L+ ++  A   ++  +H +C+ + L HLCFADDL++F  G   SI 
Sbjct: 957  CALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIE 1016

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
              +     FA  SGL  +  K   Y   +    R + L
Sbjct: 1017 GVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTL 1054


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  235 bits (600), Expect = 1e-59
 Identities = 110/278 (39%), Positives = 172/278 (61%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK +W ++G+D+ IA++ FF    L K +N T L LI K    S + ++RPI+CCN++Y
Sbjct: 627  FFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLY 686

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K ++K++ +RLK +LP+ I+PNQS F++ R ++ N+ +  +L+  Y +++      LK+D
Sbjct: 687  KIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKID 746

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            I KA+D V W FL  +L+ +  P  FI W+  C+ TAS+S+  NG   GFF  +RGLRQG
Sbjct: 747  ISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQG 806

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
              +SP+L+VICM  L+ +L  A  +K   +H RC+++ L HLCFADD+++F  G  +SI 
Sbjct: 807  CSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQ 866

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
              L     FAA S L  +  K   +   + P  +  +L
Sbjct: 867  GTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSIL 904


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  235 bits (599), Expect = 2e-59
 Identities = 115/277 (41%), Positives = 167/277 (60%)
 Frame = +2

Query: 2   FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
           F+K +WDI+G++  + V+ FF    L K +N   L LIPK      + ++RPI+CCN++Y
Sbjct: 127 FYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLY 186

Query: 182 KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
           K I+KII +RLK +LP  I+ NQS FV+ R +I N+ +  +L+  Y + +    C +K+D
Sbjct: 187 KVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKID 246

Query: 362 IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
           I KA+DSV W FL   L  M F   FI W+  C+TTAS+S+  NG   G+F  KRGLRQG
Sbjct: 247 ISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQG 306

Query: 542 DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
             +SP+LFVICM+ L+++L  A   + + FH +C+ L L HL FADDL++   G   SI 
Sbjct: 307 CSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIE 366

Query: 722 LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEV 832
             L     F   SGL  +  K   Y   + P +++E+
Sbjct: 367 GILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEI 403


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  234 bits (598), Expect = 2e-59
 Identities = 116/278 (41%), Positives = 173/278 (62%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            F+K +W+I+G +  +A++ FF+   L K +N T L LIPK +    + ++RPI+CCN++Y
Sbjct: 368  FYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLY 427

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+KII +RLK VLP  I  NQS FV+ R +I NV +  +++  Y + +    C LK+D
Sbjct: 428  KVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKID 487

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            I KA+DSV WKFL  +LE M FP  F  W+  C+TTAS+S+  NG   G F+  R LRQG
Sbjct: 488  ISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQG 547

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
              +SP+LFVI M+ L+++L  A   + + +H +C+++ L HL FADDL+I   G + SI 
Sbjct: 548  CSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSID 607

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
              ++ L  FA  SGL  +  K   Y   +   V +E++
Sbjct: 608  GIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIV 645


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  230 bits (586), Expect = 5e-58
 Identities = 107/278 (38%), Positives = 169/278 (60%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FF+ +W ++G++V +A++ FF++  L K LN T L LIPK  Y   + ++RPI+CCN++Y
Sbjct: 746  FFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLY 805

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+K++ +RLK +LP  I+PNQS F+  R ++ N+ +  +L+  Y +    P C +K+D
Sbjct: 806  KAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKID 865

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            + KA+DSV W FL   L  +  P +FI W+  C++TAS+S+  N           GLRQG
Sbjct: 866  LSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLRQG 914

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
              +SP+LFVICM  L+ +L     +K + +H RC+++ L HLCFADD+++F  G   S+ 
Sbjct: 915  CSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLE 974

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEVL 835
              L     FAA SGLN +  K   +  ++  +    +L
Sbjct: 975  GVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASIL 1012


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  229 bits (583), Expect = 1e-57
 Identities = 110/270 (40%), Positives = 166/270 (61%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FF+ +W I+G +V  A+ +FF   +LLK+ N T L LIPK      +SEFRPI+C N +Y
Sbjct: 334  FFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLY 393

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+K++ SRL+ +L ++I  +QS F+ GR +  NV +  +++  Y R    P  +LKVD
Sbjct: 394  KVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVD 453

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            ++KA+DSV W+F+   L  +  P R+I+W+ QC+TT S+++  NG+T GFF   +GLRQG
Sbjct: 454  LKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQG 513

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DP+SP+LFV+ ME  ++LL    +     +H +   L ++HL FADD++IF  G   S+ 
Sbjct: 514  DPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMH 573

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMD 811
                 L  FA  SGL  N  K   +   +D
Sbjct: 574  GICETLDDFADWSGLKVNKDKSQLFQAGLD 603


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  229 bits (583), Expect = 1e-57
 Identities = 110/270 (40%), Positives = 166/270 (61%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FF+ +W I+G +V  A+ +FF   +LLK+ N T L LIPK      +SEFRPI+C N +Y
Sbjct: 334  FFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLY 393

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+K++ SRL+ +L ++I  +QS F+ GR +  NV +  +++  Y R    P  +LKVD
Sbjct: 394  KVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVD 453

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            ++KA+DSV W+F+   L  +  P R+I+W+ QC+TT S+++  NG+T GFF   +GLRQG
Sbjct: 454  LKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQG 513

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DP+SP+LFV+ ME  ++LL    +     +H +   L ++HL FADD++IF  G   S+ 
Sbjct: 514  DPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMH 573

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMD 811
                 L  FA  SGL  N  K   +   +D
Sbjct: 574  GICETLDDFADWSGLKVNKDKSQLFQAGLD 603


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  226 bits (577), Expect = 6e-57
 Identities = 112/269 (41%), Positives = 164/269 (60%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FF   W I+G +V  A+ +FF+  +LLK+ N T L LIPK+   S +S+FRPI+C N +Y
Sbjct: 371  FFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVY 430

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I+K++  RLK  LP+ IS +QS F+ GR  + NV +  +L+  Y +K   P  +LKVD
Sbjct: 431  KVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVD 490

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            +RKA+DSV W F+   L  +  P +F  W+++C++TAS+S+  NG + G F   +GLRQG
Sbjct: 491  LRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQG 550

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DPMSP+LFV+ ME  + LL          +H +   L+++HL FADD++IF  G   S+ 
Sbjct: 551  DPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLH 610

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNM 808
              + +L  FA  SGL  N  K   Y   +
Sbjct: 611  GIVESLEDFAGWSGLLMNTNKTQLYHAGL 639


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  226 bits (575), Expect = 1e-56
 Identities = 116/277 (41%), Positives = 162/277 (58%)
 Frame = +2

Query: 2   FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
           FFK SW+I+G +  +A++ FF+   L K +N T L LIPK      + ++RPI+CCN++Y
Sbjct: 33  FFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRPISCCNVMY 92

Query: 182 KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
           K I+KI+ +RLK +LP  I+ NQS FV+ R +I NV +  DL+  Y + +    C +K+D
Sbjct: 93  KVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKDSISERCAIKID 152

Query: 362 IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
           I KA DSV W FL   L  M FP  FI W+  C+TT S+S+  NG   GFF   RGLRQG
Sbjct: 153 ISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQG 212

Query: 542 DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
             +SP+LFVICM+ L++LL          +H  CK + L HL FADDL+I   G   SI 
Sbjct: 213 CALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIE 272

Query: 722 LNLRALATFAAASGLNANAGKFAFYSCNMDPQVREEV 832
             +     F+  SGL  +  K   +S  +    R ++
Sbjct: 273 GIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQL 309


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  225 bits (573), Expect = 2e-56
 Identities = 112/270 (41%), Positives = 165/270 (61%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK  W +VG +V  AV++FF   +LLK+ N T L LIPK+   S +++FRPI+C N +Y
Sbjct: 475  FFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLY 534

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I K++ SRLK +L  +ISP+QS F+ GR +  NV +  +++  Y  K      +LKVD
Sbjct: 535  KVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVD 594

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            +RKA+DSV W F+      +  P +F+ W+ QC++T  +S+  NGS+ GFF   +GLRQG
Sbjct: 595  LRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQG 654

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DP+SP+LFV+ ME  + LL    +    ++H +   L ++HL FADD+++F  G   S+ 
Sbjct: 655  DPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLH 714

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMD 811
                AL  FA+ SGL+ N  K   Y    D
Sbjct: 715  GISEALDDFASWSGLHVNKDKTNLYLAGTD 744


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  224 bits (571), Expect = 3e-56
 Identities = 112/270 (41%), Positives = 164/270 (60%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNIIY 181
            FFK  W +VG +V  AV++FF   +LLK+ N T L LIPK+   S +++FRPI+C N +Y
Sbjct: 475  FFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLY 534

Query: 182  KCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCLLKVD 361
            K I K++ SRLK +L  +ISP+QS F+ GR +  NV +  +++  Y  K      +LKVD
Sbjct: 535  KVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVD 594

Query: 362  IRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRGLRQG 541
            +RKA+DSV W F+      +  P +F+ W+ QC++T  +S+  NGS+ GFF   +GLRQG
Sbjct: 595  LRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQG 654

Query: 542  DPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDLESIM 721
            DP+SP+LFV+ ME  + LL    +     +H +   L ++HL FADD+++F  G   S+ 
Sbjct: 655  DPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLH 714

Query: 722  LNLRALATFAAASGLNANAGKFAFYSCNMD 811
                AL  FA+ SGL+ N  K   Y    D
Sbjct: 715  GISEALDDFASWSGLHVNKDKTNLYLAGTD 744


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  223 bits (569), Expect = 5e-56
 Identities = 113/274 (41%), Positives = 169/274 (61%), Gaps = 4/274 (1%)
 Frame = +2

Query: 2    FFKRSWDIVGKDVCIAVRDFFSHSELLKELNCTKLTLIPKVQYPSHVSEFRPIACCNI-- 175
            FFK +W ++G +V  AV +FF+ S LLK+ N T L LIPK+   S +++FRPI+C +   
Sbjct: 423  FFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGP 482

Query: 176  --IYKCITKIICSRLKHVLPSIISPNQSGFVQGRQIIHNVSVVQDLIGLYGRKATPPCCL 349
              +YK I +++ +RL+ +L  +ISP QS F+ GR +  NV +  +L+  Y R+   P  +
Sbjct: 483  ITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGM 542

Query: 350  LKVDIRKAYDSVDWKFLQQILETMQFPHRFISWVMQCVTTASYSLCANGSTFGFFAGKRG 529
            LKVD+RKA+DS+ W F+   L+ +  P RF+ W+ QC++T ++S+C NG+T GFF   RG
Sbjct: 543  LKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRG 602

Query: 530  LRQGDPMSPFLFVICMEYLTRLLTYAGEQKDYKFHFRCKSLKLNHLCFADDLVIFCKGDL 709
            LRQG+P+SPFLFV+ ME  + LL    +     +H +   L ++HL FADD+++F  G  
Sbjct: 603  LRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGS 662

Query: 710  ESIMLNLRALATFAAASGLNANAGKFAFYSCNMD 811
             S+     AL  FA  SGL  N  K   Y   +D
Sbjct: 663  SSLHGISEALEDFAFWSGLVLNREKTHLYLAGLD 696