BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00007426
         (1327 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   117   5e-61
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           112   8e-61
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   114   5e-60
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   110   1e-59
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   106   3e-59
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   106   3e-59
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   112   9e-59
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   108   4e-58
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   106   5e-58
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        108   2e-57
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   105   3e-57
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                104   5e-57
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               104   5e-57
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-...   103   5e-57
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   103   2e-56
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     103   2e-56
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     103   2e-56
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...   106   9e-56
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   108   2e-55
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]           100   2e-55

>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  117 bits (293), Expect(3) = 5e-61
 Identities = 52/90 (57%), Positives = 68/90 (75%)
 Frame = -3

Query: 863 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 684
           ++F +HCV GK K++  +  +HRTKG+LDY+H+DLWGPSR PS GG  YMLTIIDD  RK
Sbjct: 353 MKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 412

Query: 683 L*VYFLKYKSKVFSTFKEWKVLIKKSDGQE 594
           +  YFLK+K   F+ FKEWKV+IK+   +E
Sbjct: 413 VWPYFLKHKDDTFAAFKEWKVMIKRQTEKE 442



 Score = 87.4 bits (215), Expect(3) = 5e-61
 Identities = 43/71 (60%), Positives = 49/71 (69%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EAA TA YLINRS + SL    P EVW G P +YS +R+FGC AYAHVN GKLEP
Sbjct: 506 KRFWAEAAKTACYLINRSPSISLNKKTPIEVWSGMPANYSQLRVFGCTAYAHVNNGKLEP 565

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 566 RA-IKCLFLGY 575



 Score = 79.7 bits (195), Expect(3) = 5e-61
 Identities = 39/65 (60%), Positives = 47/65 (72%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           K QT K+VK LRTD G  FCS+ F+ +C+ +GI  HHTIP TPQQNGVAERMN TI  + 
Sbjct: 436 KRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIPYTPQQNGVAERMNRTIISKA 495

Query: 433 RVVCS 419
           R + S
Sbjct: 496 RCMLS 500


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  112 bits (280), Expect(3) = 8e-61
 Identities = 48/87 (55%), Positives = 65/87 (74%)
 Frame = -3

Query: 869 SKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL* 690
           SK++F +HC+ GK K++  +  +H TKG LDY+H+DLWGPS+ PS GG  YMLTIIDD  
Sbjct: 457 SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYS 516

Query: 689 RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           RK+  YFLK+K   F+ FK WKV+I++
Sbjct: 517 RKVWPYFLKHKDDTFTAFKNWKVMIER 543



 Score = 86.3 bits (212), Expect(3) = 8e-61
 Identities = 42/71 (59%), Positives = 49/71 (69%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EAA+TA YLINRS +  L    P EVW G P DYS +++FGC AYAHV+ GKLEP
Sbjct: 612 KRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEP 671

Query: 222 RAHVSPFFLSF 190
           RA V   FL +
Sbjct: 672 RA-VKCLFLGY 681



 Score = 85.1 bits (209), Expect(3) = 8e-61
 Identities = 43/72 (59%), Positives = 51/72 (70%)
 Frame = -1

Query: 634 RNGKF**KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMN 455
           +N K   + QT +KVK L TD G EFCS+ FN +C+ +GI RHHTIP TPQQNGVAERMN
Sbjct: 535 KNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMN 594

Query: 454 ITI*ERERVVCS 419
            TI  R R + S
Sbjct: 595 RTIISRARCMLS 606


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score =  114 bits (285), Expect(3) = 5e-60
 Identities = 50/90 (55%), Positives = 68/90 (75%)
 Frame = -3

Query: 863 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 684
           ++F +HCV GK K++  +  +HR+KG+LDY+H+DLWGPSR PS GG  YMLTIIDD  RK
Sbjct: 398 MKFCEHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRK 457

Query: 683 L*VYFLKYKSKVFSTFKEWKVLIKKSDGQE 594
           +  YFLK+K   F+ FKEWKV+I++   +E
Sbjct: 458 VWPYFLKHKDDTFAAFKEWKVMIERQTEKE 487



 Score = 84.3 bits (207), Expect(3) = 5e-60
 Identities = 41/71 (57%), Positives = 47/71 (66%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW E A TA YLINRS +  L    P EVW G P DYS +R+FGC AYAHV+ GKLEP
Sbjct: 551 KRFWAEVANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEP 610

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 611 RA-IKCLFLGY 620



 Score = 82.4 bits (202), Expect(3) = 5e-60
 Identities = 40/65 (61%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT K+VK LRTD G EFCS+ F+ +C+ +GI RHHTIP TPQQNGVAERMN TI    
Sbjct: 481 ERQTEKEVKVLRTDSGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISNT 540

Query: 433 RVVCS 419
           R + S
Sbjct: 541 RCMLS 545


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  110 bits (276), Expect(3) = 1e-59
 Identities = 50/91 (54%), Positives = 66/91 (72%)
 Frame = -3

Query: 866 KVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*R 687
           K++F +HCV GK K++  +  +HRTKG+LDY+H+DLWGPSR    GG  YMLTIIDD  R
Sbjct: 457 KMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSR 516

Query: 686 KL*VYFLKYKSKVFSTFKEWKVLIKKSDGQE 594
           K+  YFLK+K   F+ FKEWKV I++   +E
Sbjct: 517 KVWPYFLKHKDDTFAAFKEWKVRIERQTEKE 547



 Score = 85.9 bits (211), Expect(3) = 1e-59
 Identities = 42/71 (59%), Positives = 48/71 (67%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EAA TA YLINRS +  L    P EVW G P DYS +R+FGC AYAHV+ GKLEP
Sbjct: 611 KRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEP 670

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 671 RA-IKCLFLGY 680



 Score = 83.2 bits (204), Expect(3) = 1e-59
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT K+VK LRTD G EFCS+ F+ +C+ +GI RHHTIP TPQQNGVAERMN TI  + 
Sbjct: 541 ERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKA 600

Query: 433 RVVCS 419
           R + S
Sbjct: 601 RCMLS 605


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score =  106 bits (264), Expect(4) = 3e-59
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 664 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMT 723

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 724 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 756



 Score = 85.9 bits (211), Expect(4) = 3e-59
 Identities = 39/71 (54%), Positives = 52/71 (73%)
 Frame = -2

Query: 402  KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
            K FW EA +TA YLINRS + +++   P EVW G+P +YS++R+FGC AYAHV+ GKLEP
Sbjct: 825  KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEP 884

Query: 222  RAHVSPFFLSF 190
            RA +   FL +
Sbjct: 885  RA-IKCIFLGY 894



 Score = 84.0 bits (206), Expect(4) = 3e-59
 Identities = 39/65 (60%), Positives = 49/65 (75%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G+EFCS  F  +CK++GI RH+T+P TPQQNGVAERMN TI  + 
Sbjct: 755 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKA 814

Query: 433 RVVCS 419
           R + S
Sbjct: 815 RCLLS 819



 Score = 23.1 bits (48), Expect(4) = 3e-59
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HM+E G+  L+K+G
Sbjct: 633 SLSNSDATNLWHMRLGHMTEIGLAELSKRG 662


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  106 bits (264), Expect(4) = 3e-59
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 457 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMT 516

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 517 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 549



 Score = 85.9 bits (211), Expect(4) = 3e-59
 Identities = 39/71 (54%), Positives = 52/71 (73%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS + +++   P EVW G+P +YS++R+FGC AYAHV+ GKLEP
Sbjct: 618 KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEP 677

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 678 RA-IKCIFLGY 687



 Score = 84.0 bits (206), Expect(4) = 3e-59
 Identities = 39/65 (60%), Positives = 49/65 (75%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G+EFCS  F  +CK++GI RH+T+P TPQQNGVAERMN TI  + 
Sbjct: 548 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKA 607

Query: 433 RVVCS 419
           R + S
Sbjct: 608 RCLLS 612



 Score = 23.1 bits (48), Expect(4) = 3e-59
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HM+E G+  L+K+G
Sbjct: 426 SLSNSDATNLWHMRLGHMTEIGLAELSKRG 455


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  112 bits (281), Expect(3) = 9e-59
 Identities = 50/90 (55%), Positives = 67/90 (74%)
 Frame = -3

Query: 863 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 684
           ++F + CV GK K++  +  +HRTKG+LDY+H+DLWGPSR PS GG  YMLTIIDD  RK
Sbjct: 458 MKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517

Query: 683 L*VYFLKYKSKVFSTFKEWKVLIKKSDGQE 594
           +  YFLK+K   F+ FKEWKV+I++   +E
Sbjct: 518 VWPYFLKHKDDTFAAFKEWKVMIERQTEKE 547



 Score = 83.2 bits (204), Expect(3) = 9e-59
 Identities = 41/73 (56%), Positives = 48/73 (65%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EAA TA YLINRS +  L    P E+W G P DYS +R+FGC AYAHV+  KLEP
Sbjct: 611 KRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEP 670

Query: 222 RAHVSPFFLSFKL 184
           RA +   FL + L
Sbjct: 671 RA-IKCLFLGYGL 682



 Score = 80.9 bits (198), Expect(3) = 9e-59
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT K+VK LRTD   EFCS+ F+ +C+ +GI RHHTIP TPQQNGVAERMN TI  + 
Sbjct: 541 ERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKA 600

Query: 433 RVVCS 419
           R + S
Sbjct: 601 RCMLS 605


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  108 bits (271), Expect(3) = 4e-58
 Identities = 50/90 (55%), Positives = 66/90 (73%)
 Frame = -3

Query: 863 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 684
           ++F +HCV GK K++  +  +HRTKG+LDY+H+DLWGPSR PS GG  YMLTIIDD  RK
Sbjct: 458 MKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517

Query: 683 L*VYFLKYKSKVFSTFKEWKVLIKKSDGQE 594
              YFLK+K   F+ FKE KV+I++   +E
Sbjct: 518 EWPYFLKHKDDTFAAFKERKVMIERQTEKE 547



 Score = 85.5 bits (210), Expect(3) = 4e-58
 Identities = 41/71 (57%), Positives = 48/71 (67%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EAA TA YLINRS +  L    P E+W G P DYS +R+FGC AYAHV+ GKLEP
Sbjct: 611 KRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEP 670

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 671 RA-IKCLFLGY 680



 Score = 80.1 bits (196), Expect(3) = 4e-58
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT K+VK L TD G EFCS+ F+ +C+ +GI RHHTIP TPQQNGVAERMN TI  + 
Sbjct: 541 ERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKA 600

Query: 433 RVVCS 419
           R + S
Sbjct: 601 RCMLS 605


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  106 bits (264), Expect(4) = 5e-58
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 418 LDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 477

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 478 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 510



 Score = 82.8 bits (203), Expect(4) = 5e-58
 Identities = 38/65 (58%), Positives = 49/65 (75%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G++FCS  F  +CK++GI RH+T+P TPQQNGVAERMN TI  + 
Sbjct: 509 ERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKA 568

Query: 433 RVVCS 419
           R + S
Sbjct: 569 RCMLS 573



 Score = 81.6 bits (200), Expect(4) = 5e-58
 Identities = 37/71 (52%), Positives = 51/71 (71%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS + +++   P +VW G+P +YS++R+FGC AYAHV+  KLEP
Sbjct: 579 KQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEP 638

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 639 RA-IKCIFLGY 648



 Score = 24.3 bits (51), Expect(4) = 5e-58
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HMSE G+  L+K+G
Sbjct: 387 SLSNSDATNLWHMRLGHMSEIGLAELSKRG 416


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  108 bits (269), Expect(4) = 2e-57
 Identities = 46/93 (49%), Positives = 67/93 (72%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    ISK++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 457 LDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 516

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F+ FKEWK ++++
Sbjct: 517 IVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 549



 Score = 81.6 bits (200), Expect(4) = 2e-57
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G+EFCS  F  +CK++GI RH+T+P TPQQNGVAERMN  I  + 
Sbjct: 548 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRIIISKA 607

Query: 433 RVVCS 419
           R + S
Sbjct: 608 RCMLS 612



 Score = 78.6 bits (192), Expect(4) = 2e-57
 Identities = 38/71 (53%), Positives = 50/71 (70%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS + +     P EVW G+P +YS++++FGC AYAHV+ GKLEP
Sbjct: 618 KQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPANYSDLKVFGCTAYAHVDNGKLEP 676

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 677 RA-IKCIFLGY 686



 Score = 24.3 bits (51), Expect(4) = 2e-57
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HMSE G+  L+K+G
Sbjct: 426 SLSNSDATNLWHMRLGHMSEIGLAELSKRG 455


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  105 bits (263), Expect(3) = 3e-57
 Identities = 51/106 (48%), Positives = 71/106 (66%)
 Frame = -3

Query: 914  VSLIRRVINLSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPS 735
            +S++ +   LS     K++F + CV+GKQ+++  S G H T G+L+YIHSDLWGPS V S
Sbjct: 760  LSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVES 819

Query: 734  KGGH*YMLTIIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKKSDGQ 597
              G  Y +T IDD  RK+ VYFLK K +VF  FKEWK +++K  G+
Sbjct: 820  HSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGK 865



 Score = 84.0 bits (206), Expect(3) = 3e-57
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = -2

Query: 402  KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
            K FW EA  TA YL+NRS + +++   P+EVW G P +YS ++IFGC AYAHV++GKLEP
Sbjct: 930  KKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEP 989

Query: 222  RA 217
            RA
Sbjct: 990  RA 991



 Score = 82.0 bits (201), Expect(3) = 3e-57
 Identities = 37/61 (60%), Positives = 47/61 (77%)
 Frame = -1

Query: 613  KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
            + +TGK VK LRTD GLEFC+ +F+ FC+ +GI RH T+  TPQQNGVAERMN T+ +R 
Sbjct: 860  EKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRA 919

Query: 433  R 431
            R
Sbjct: 920  R 920


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  104 bits (260), Expect(3) = 5e-57
 Identities = 44/93 (47%), Positives = 66/93 (70%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 442 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 501

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I++D  RK+  YFLK+K + F+ FKEWK ++++
Sbjct: 502 IVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 534



 Score = 83.6 bits (205), Expect(3) = 5e-57
 Identities = 39/65 (60%), Positives = 49/65 (75%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G+EFCS  F  +CK++GI RH+T+P TPQQNGVAERMN TI  + 
Sbjct: 533 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKA 592

Query: 433 RVVCS 419
           R + S
Sbjct: 593 RCMLS 597



 Score = 82.8 bits (203), Expect(3) = 5e-57
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS   +++   P +VW G+P +YS++++FGC AYAHV+ GKLEP
Sbjct: 603 KQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEP 662

Query: 222 RAHVSPFFLSFK-----------------LMDYMFCHKQIMALQEFRNTIR*KQQIHFAI 94
           R  +   FL +                  +  Y+  H+ +M   +    I  + Q   ++
Sbjct: 663 RT-IKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASV 721

Query: 93  QFLIIFINSSVR 58
           Q  I+ + SS++
Sbjct: 722 QIQILLLFSSLQ 733


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  104 bits (260), Expect(3) = 5e-57
 Identities = 44/93 (47%), Positives = 66/93 (70%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 274 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 333

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I++D  RK+  YFLK+K + F+ FKEWK ++++
Sbjct: 334 IVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVER 366



 Score = 83.6 bits (205), Expect(3) = 5e-57
 Identities = 39/65 (60%), Positives = 49/65 (75%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G+EFCS  F  +CK++GI RH+T+P TPQQNGVAERMN TI  + 
Sbjct: 365 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKA 424

Query: 433 RVVCS 419
           R + S
Sbjct: 425 RCMLS 429



 Score = 82.8 bits (203), Expect(3) = 5e-57
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS   +++   P +VW G+P +YS++++FGC AYAHV+ GKLEP
Sbjct: 435 KQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEP 494

Query: 222 RAHVSPFFLSFK-----------------LMDYMFCHKQIMALQEFRNTIR*KQQIHFAI 94
           R  +   FL +                  +  Y+  H+ +M   +    I  + Q   ++
Sbjct: 495 RT-IKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASV 553

Query: 93  QFLIIFINSSVR 58
           Q  I+ + SS++
Sbjct: 554 QIQILLLFSSLQ 565


>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549746|gb|ABA92543.1|
           retrotransposon protein, putative, Ty1-copia subclass,
           expressed [Oryza sativa Japonica Group]
          Length = 1170

 Score =  103 bits (256), Expect(4) = 5e-57
 Identities = 44/93 (47%), Positives = 63/93 (67%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK  ++  +   H T+G+LDY+HS+LWGP+R  S GG  YM+T
Sbjct: 492 LDGQSIGKLKFCEHCIFGKHNRVKFNTSTHTTEGILDYVHSNLWGPARKTSFGGARYMMT 551

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
            +DD  RK+  YFLK+K + F  FKEWK ++KK
Sbjct: 552 TVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKK 584



 Score = 85.5 bits (210), Expect(4) = 5e-57
 Identities = 39/71 (54%), Positives = 52/71 (73%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS + +++   P EVW G+P +YS++R+FGC AYAHV+ GKLEP
Sbjct: 653 KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCIAYAHVDNGKLEP 712

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 713 RA-IKCIFLGY 722



 Score = 79.0 bits (193), Expect(4) = 5e-57
 Identities = 38/73 (52%), Positives = 50/73 (68%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           K QT +KVK LRTD G+E CS  F  +CK +GI RH+T+P TPQQNGVAERM  TI  + 
Sbjct: 583 KKQTERKVKILRTDNGMELCSKIFKSYCKCEGIVRHYTVPHTPQQNGVAERMKRTIISKS 642

Query: 433 RVVCSLILV*EKF 395
           R +   + + ++F
Sbjct: 643 RCMLPYVGLPKQF 655



 Score = 23.9 bits (50), Expect(4) = 5e-57
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 963 SNIDNPKLCHMSEKGMCVLNKKG 895
           +N+ + +L HMSE G+  L+K+G
Sbjct: 468 TNLWHMRLGHMSEIGLAELSKRG 490


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score =  103 bits (256), Expect(3) = 2e-56
 Identities = 44/93 (47%), Positives = 64/93 (68%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+   S GG  YM+T
Sbjct: 492 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMT 551

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 552 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 584



 Score = 83.2 bits (204), Expect(3) = 2e-56
 Identities = 38/71 (53%), Positives = 50/71 (70%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +T  YLINRS + + +   P EVW G+P +YS++R+FGC AYAHV+ GKLEP
Sbjct: 653 KQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEP 712

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 713 RA-IKCIFLGY 722



 Score = 82.8 bits (203), Expect(3) = 2e-56
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT KKVK LRTD G+EFCS  F  +CK++GI  H+T+P TPQQNGVAERMN+ I  + 
Sbjct: 583 ERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKA 642

Query: 433 RVVCS 419
           R + S
Sbjct: 643 RCMLS 647


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  103 bits (256), Expect(3) = 2e-56
 Identities = 44/93 (47%), Positives = 64/93 (68%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+   S GG  YM+T
Sbjct: 492 LDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMT 551

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 552 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 584



 Score = 83.2 bits (204), Expect(3) = 2e-56
 Identities = 38/71 (53%), Positives = 50/71 (70%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +T  YLINRS + + +   P EVW G+P +YS++R+FGC AYAHV+ GKLEP
Sbjct: 653 KQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEP 712

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 713 RA-IKCIFLGY 722



 Score = 82.8 bits (203), Expect(3) = 2e-56
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT KKVK LRTD G+EFCS  F  +CK++GI  H+T+P TPQQNGVAERMN+ I  + 
Sbjct: 583 ERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKA 642

Query: 433 RVVCS 419
           R + S
Sbjct: 643 RCMLS 647


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  103 bits (256), Expect(4) = 2e-56
 Identities = 44/93 (47%), Positives = 64/93 (68%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+   S GG  YM+T
Sbjct: 429 LDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMT 488

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 489 IVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVER 521



 Score = 85.5 bits (210), Expect(4) = 2e-56
 Identities = 39/71 (54%), Positives = 51/71 (71%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS   +++   P EVW G+P +YS++R+FGC AYAHV+ GKLEP
Sbjct: 590 KQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEP 649

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 650 RA-IKCIFLGY 659



 Score = 76.6 bits (187), Expect(4) = 2e-56
 Identities = 37/65 (56%), Positives = 46/65 (70%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LRTD G+EFCS  F  +CK++GI  H+T P TPQQN VAERMN TI  + 
Sbjct: 520 ERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKA 579

Query: 433 RVVCS 419
           R + S
Sbjct: 580 RCMLS 584



 Score = 24.3 bits (51), Expect(4) = 2e-56
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HMSE G+  L+K+G
Sbjct: 398 SLSNSDATNLWHMRLGHMSEIGLAELSKRG 427


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1262

 Score =  106 bits (264), Expect(4) = 9e-56
 Identities = 45/93 (48%), Positives = 65/93 (69%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K++F +HC+ GK K++  +   H T+G+LDY+HSDLWGP+R  S GG  YM+T
Sbjct: 472 LDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMT 531

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           I+DD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 532 IVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 564



 Score = 81.6 bits (200), Expect(4) = 9e-56
 Identities = 37/71 (52%), Positives = 51/71 (71%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS + +++   P +VW G+P +YS++R+FGC AYAHV+  KLEP
Sbjct: 616 KQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEP 675

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 676 RA-IKCIFLGY 685



 Score = 75.1 bits (183), Expect(4) = 9e-56
 Identities = 32/52 (61%), Positives = 42/52 (80%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERM 458
           + QT +KVK LRTD G++FCS  F  +CK++GI RH+T+P TPQQNGVAER+
Sbjct: 563 ERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERL 614



 Score = 24.3 bits (51), Expect(4) = 9e-56
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HMSE G+  L+K+G
Sbjct: 441 SLSNSDATNLWHMRLGHMSEIGLAELSKRG 470


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
           gi|18542925|gb|AAL75759.1| Putative pol polyprotein
           [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1005

 Score =  108 bits (269), Expect(3) = 2e-55
 Identities = 49/90 (54%), Positives = 65/90 (72%)
 Frame = -3

Query: 863 VEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLTIIDDL*RK 684
           ++F +HCV GK K +  +  +HR KG+LDY+H+DLWGPS  PS GG  YMLTIIDD  RK
Sbjct: 195 MKFCEHCVFGKHKWVKFNISVHRIKGILDYVHADLWGPSHKPSLGGARYMLTIIDDHSRK 254

Query: 683 L*VYFLKYKSKVFSTFKEWKVLIKKSDGQE 594
           +  YFLK+K   F+ FKEWKV+I++   +E
Sbjct: 255 VWPYFLKHKDDTFAAFKEWKVMIERQTEKE 284



 Score = 82.8 bits (203), Expect(3) = 2e-55
 Identities = 41/71 (57%), Positives = 47/71 (66%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EAA TA YLINRS +  L    P EVW G   DYS +R+FGC AYAHV+ GKLEP
Sbjct: 348 KRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAHVDNGKLEP 407

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 408 RA-IKCLFLGY 417



 Score = 74.7 bits (182), Expect(3) = 2e-55
 Identities = 36/56 (64%), Positives = 44/56 (78%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI 446
           + QT K+VK LRTD G EFCS+ F+ + + +GI RH+TIP TPQQNGVAERMN TI
Sbjct: 278 ERQTEKEVKVLRTDNGGEFCSDAFDDYYRKEGIVRHYTIPYTPQQNGVAERMNRTI 333


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score = 99.8 bits (247), Expect(4) = 2e-55
 Identities = 44/93 (47%), Positives = 62/93 (66%)
 Frame = -3

Query: 887 LSNNFISKVEFYKHCVLGKQKKISCSKGIHRTKGMLDYIHSDLWGPSRVPSKGGH*YMLT 708
           L    I K+ F +HC+ GK  ++  +   H T+G+LDY+HSDLWGP+   S GG  YM+T
Sbjct: 278 LDGQSIGKLIFCEHCIFGKHHRVKFNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMMT 337

Query: 707 IIDDL*RKL*VYFLKYKSKVFSTFKEWKVLIKK 609
           IIDD  RK+  YFLK+K + F  FKEWK ++++
Sbjct: 338 IIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 370



 Score = 81.6 bits (200), Expect(4) = 2e-55
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = -1

Query: 613 KNQTGKKVKRLRTDKGLEFCSNEFNVFCKNKGIARHHTIPGTPQQNGVAERMNITI*ERE 434
           + QT +KVK LR D G+EFCS  F  +CK++GI RH+T+P TPQQNGVAERMN TI  + 
Sbjct: 369 ERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKA 428

Query: 433 RVVCS 419
           R + S
Sbjct: 429 RCMLS 433



 Score = 80.5 bits (197), Expect(4) = 2e-55
 Identities = 37/71 (52%), Positives = 49/71 (69%)
 Frame = -2

Query: 402 KSFWVEAATTA*YLINRSANRSLENNIPKEVWLGNPVDYSNVRIFGCHAYAHVNEGKLEP 223
           K FW EA +TA YLINRS + +++   P EVW  +P  YS++R+F C AYAHV+ GKLEP
Sbjct: 439 KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDLRVFSCTAYAHVDNGKLEP 498

Query: 222 RAHVSPFFLSF 190
           RA +   FL +
Sbjct: 499 RA-IKCIFLGY 508



 Score = 24.3 bits (51), Expect(4) = 2e-55
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = -2

Query: 969 SLSNID-----NPKLCHMSEKGMCVLNKKG 895
           SLSN D     + +L HMSE G+  L+K+G
Sbjct: 247 SLSNSDATNLWHMRLGHMSEIGLAELSKRG 276