BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00005240
         (1947 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              544   e-152
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   539   e-150
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   520   e-144
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   519   e-144
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   518   e-144
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   516   e-143
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   513   e-142
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   511   e-142
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           511   e-142
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   509   e-141
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   507   e-141
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   505   e-140
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   502   e-139
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   500   e-139
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   479   e-132
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   477   e-132
ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutr...   476   e-131
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   473   e-130
ref|XP_006410875.1| hypothetical protein EUTSA_v10016472mg [Eutr...   472   e-130
ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Caps...   471   e-130

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  544 bits (1401), Expect = e-152
 Identities = 309/569 (54%), Positives = 389/569 (68%), Gaps = 14/569 (2%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSSTSLLRQFPTSAHSH 1677
            MEA  N+LSS+ SFPPRTHFR    + SSSV ++++Q +   ++  T++ R+FPTS    
Sbjct: 1    MEAGTNILSSTPSFPPRTHFR----NSSSSVLMLHDQVAPAVASIPTTIARKFPTSVLLQ 56

Query: 1676 EQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFV-QQHMDSTLQTQGDYDLLLSDWPG 1500
            EQRDE +PF   L++++T Q  +TL++ ++E      +++ D   Q   +++  L   PG
Sbjct: 57   EQRDEYRPFPQALKDERTFQ--ATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPG 114

Query: 1499 LSFLLPSLGN-EDHPSSAAVSKS--------MNLKSSDVIXXXXXXXXXXXXXXXXXXXX 1347
            L + LPS    E  P S+++ KS        M++K  DV+                    
Sbjct: 115  LWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENA 174

Query: 1346 XXLDVDL-DGPFSSRLSNSSKVTP---KIVRSSRLFERRAKKRRSSTPRVNYELGSSEKT 1179
              L  DL D P  S  + SS   P   K VRS+RL ERR+KKRR+    V+   GS    
Sbjct: 175  KLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAVHENHGSRRAE 234

Query: 1178 ESRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDRE 999
              R+++EGYDP DPLRLFLWGPET++LLT +EE+ELI  IQ+  +L  VK +LQS   RE
Sbjct: 235  VQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKRE 294

Query: 998  PTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEG 819
            PT  EWA AVGLS   L+S++ S  RSR+KLI AN RMVV+IAKQYQGRGLNL+DLLQEG
Sbjct: 295  PTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEG 354

Query: 818  SMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARK 639
            SMGLM SVEKFKP AGCRF SYAYWWIRQ +RKAIFQHSRTIRLPENMY+L  KV EA++
Sbjct: 355  SMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKR 414

Query: 638  SFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNI 459
             FIQEGHH+PT EE+A RVGIT EKLQ LL   R PLSMQQ VW DQ  T+QEVTADT I
Sbjct: 415  LFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGI 474

Query: 458  ENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKER 279
            E PDV   +QLMR+H+RNLL  LTP+E +I++LR+GIG G  +  +LSEIG +FG SKER
Sbjct: 475  EIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPR--TLSEIGLVFGFSKER 532

Query: 278  VRQIESRALLKLKESLNSHGLMAYTDLLL 192
            VRQ+E RAL KLK+ L+SHGL +YTDLL+
Sbjct: 533  VRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  539 bits (1388), Expect = e-150
 Identities = 307/576 (53%), Positives = 391/576 (67%), Gaps = 21/576 (3%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSS-------VPVINEQTSFVPSTSSTSLLRQF 1698
            MEA  N+LSS+ SFPPRTHFR +++S ++        V ++++Q +   ++  T++ R+F
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIARKF 60

Query: 1697 PTSAHSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFV-QQHMDSTLQTQGDYDL 1521
            PTS    EQRDE +PF   L++++T Q  +TL++ ++E      +++ D   Q   +++ 
Sbjct: 61   PTSVLLQEQRDEYRPFPQALKDERTFQ--ATLEKRQMEIVVSADEENSDDHNQYMVNFER 118

Query: 1520 LLSDWPGLSFLLPSLGN-EDHPSSAAVSKS--------MNLKSSDVIXXXXXXXXXXXXX 1368
             L   PGL + LPS    E  P S+++ KS        M++K  DV+             
Sbjct: 119  QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178

Query: 1367 XXXXXXXXXLDVDL-DGPFSSRLSNSSKVTP---KIVRSSRLFERRAKKRRSSTPRVNYE 1200
                     L  DL D P  S  + SS   P   K VRS+RL ERR+KKRR+    V+  
Sbjct: 179  VSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAVHEN 238

Query: 1199 LGSSEKTESRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKL 1020
             GS      R+++EGYDP DPLRLFLWGPET++LLT +EE+ELI  IQ+  +L  VK +L
Sbjct: 239  HGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRL 298

Query: 1019 QSQFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNL 840
            QS   REPT  EWA AVGLS   L+S++ S  RSR+KLI AN RMVV+IAKQYQGRGLNL
Sbjct: 299  QSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNL 358

Query: 839  KDLLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHA 660
            +DLLQEGSMGLM SVEKFKP AGCRF SYAYWWIRQ +RKAIFQHSRTIRLPENMY+L  
Sbjct: 359  QDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLG 418

Query: 659  KVLEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQE 480
            KV EA++ FIQEGHH+PT EE+A RVGIT EKLQ LL   R PLSMQQ VW DQ  T+QE
Sbjct: 419  KVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQE 478

Query: 479  VTADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGAL 300
            VTADT IE PDV   +QLMR+H+RNLL  LTP+E +I++LR+GIG G  +  +LSEIG +
Sbjct: 479  VTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPR--TLSEIGLV 536

Query: 299  FGLSKERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            FG SKERVRQ+E RAL KLK+ L+SHGL +YTDLL+
Sbjct: 537  FGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  520 bits (1338), Expect = e-144
 Identities = 303/576 (52%), Positives = 377/576 (65%), Gaps = 21/576 (3%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSS---TSLLRQFPTSA 1686
            MEA  + LSSSS+FP  TH R+   S S S  V+      VP+ +S   TS+ R FPTS 
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 1685 HSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSDW 1506
               EQRDE KP   VL+EDKT +  + LDR +IE G  V + +D        Y L+ S  
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSE--AALDRMQIETGASVHEDLD----IDDFYPLVNSSK 114

Query: 1505 PGLSF-----LLPSLGNEDHPSS--------AAVSKSMNLKSSDVIXXXXXXXXXXXXXX 1365
            P L       +  SL     PS+         A +K M+++  +V+              
Sbjct: 115  PQLLNHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAA 174

Query: 1364 XXXXXXXXLDVDLDGPFSSRLSNSSKVTPKIVRSSRLFERRAKKRRS-STPR---VNYEL 1197
                    +  D D    + L+N      K VRS+R+ ERR K+ ++   P+   + +E 
Sbjct: 175  SLAEDSQSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHES 234

Query: 1196 GSSEKTESRR-LSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKL 1020
             S   ++ R+ +SEG++PNDPLRLFLWGPET+QLLT +EE ELI  +QD  KL  VK +L
Sbjct: 235  NSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRL 294

Query: 1019 QSQFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNL 840
            Q+QF REPT  EWA AVG+S   L+S++ S   SREKLI AN RMVV+IAKQYQGRGL L
Sbjct: 295  QTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 354

Query: 839  KDLLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHA 660
            +DL+QEGSMGLMKSVEKFKPQAGCRF +YAYWWIRQ +RKAIFQHSRTIRLPEN+Y+L  
Sbjct: 355  QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLG 414

Query: 659  KVLEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQE 480
            KVLEA+KS IQEG+HNP  EELA RVGIT EKL+ LL   R PLSMQQ VW DQ  T+QE
Sbjct: 415  KVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQE 474

Query: 479  VTADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGAL 300
            VTADT +E PDV   +QLMR+H+R+LL  L  RE +I++LRYGI    GK++SLSEIG +
Sbjct: 475  VTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIED--GKQRSLSEIGGM 532

Query: 299  FGLSKERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            FGLSKERVRQ+ESRA LKL++SL S GL AY  LL+
Sbjct: 533  FGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  519 bits (1336), Expect = e-144
 Identities = 299/574 (52%), Positives = 378/574 (65%), Gaps = 19/574 (3%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSS-VPVINEQTSFVPSTSS---TSLLRQFPTS 1689
            MEAA NLLS   +F  RT  + +  S SSS V + +EQ +  P+ +S   TS+ R FPTS
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAA--PAATSIPITSVARHFPTS 58

Query: 1688 AHSHEQRDECKPF--FSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLL 1515
                EQRD+ +P       +EDK    P   D+ +IENG  + +   S    Q  ++  L
Sbjct: 59   VLLQEQRDDYRPLPVLHFFKEDKA--YPGATDKQQIENGASLNEENASNNFGQLGFEKKL 116

Query: 1514 SDWPGLSFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXL- 1338
              WP L+ LL  L +E++PSS +  +S+   + +++                        
Sbjct: 117  LQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASL 176

Query: 1337 ----DVDLDGPFSSRLSNSSKVTPKI-------VRSSRLFERRAKKRRSSTPRVNYELGS 1191
                 +DLD   S+ L +++  T  +       VRS+R  ER++K+RR        E  S
Sbjct: 177  SEDLKLDLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETYS 236

Query: 1190 SEKTESRR-LSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQS 1014
            S +T+ RR LSEG+DPNDPLRLFLWGPETKQLLT +EE+EL   +Q+  +L  VK KLQS
Sbjct: 237  SRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQS 296

Query: 1013 QFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKD 834
            QF REPT  EWA A+GL   AL++E+ S   SR+KLI AN RMVV+IAKQYQ RGL+L+D
Sbjct: 297  QFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQD 356

Query: 833  LLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKV 654
            LLQEGSMGLMKSVE+FKPQ GCRF +YAYWWIRQ IRK+I QHSRT+RLPEN++ L +KV
Sbjct: 357  LLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKV 416

Query: 653  LEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVT 474
            L+A+KS+I+EG+H P+ EELA RVGIT EKL  LL   R PLSMQQSVW DQ IT+QEVT
Sbjct: 417  LDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVT 476

Query: 473  ADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFG 294
             DT IE PDV   +QLMR+H+RNLL  L+PRE  I+KLR+GI     K  SLSEIG +FG
Sbjct: 477  PDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEE--SKENSLSEIGNMFG 534

Query: 293  LSKERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            LSKERVRQ+ESRAL KLK+ LN HGL AY DLL+
Sbjct: 535  LSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  518 bits (1333), Expect = e-144
 Identities = 297/578 (51%), Positives = 380/578 (65%), Gaps = 23/578 (3%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYN-----NASCSSSVPVINEQTS-FVPSTSSTSLLRQFP 1695
            MEA  NLLSS  SFP RT  +++     ++S SSSV + NEQ++  V S  ++S+ R FP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1694 TSAHSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLL 1515
            TS    EQRDE +P   + +EDKT Q  +T D   +E   F  +  +S     GD D L+
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQ--ATSDSRNMETEAFFVEEKNS-----GDLDQLV 113

Query: 1514 SD-------WPGLSFLLPSLGNEDHPSSAAVSKSMN---LKSSDVIXXXXXXXXXXXXXX 1365
             D       WP L  L P +   + PS +   +S++    +S D                
Sbjct: 114  QDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173

Query: 1364 XXXXXXXXLDVDLDGPFSSRLSNSSKV-----TPKIVRSSRLFERRAKKRRSSTPRV-NY 1203
                     +  L+G   + +S +S +       K VRS++  ERR+KKR+ S P+V N+
Sbjct: 174  SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNH 233

Query: 1202 ELGSSEKTE-SRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKG 1026
            E  +S K    ++LSEG+D NDPLRLFLWGPET++LLT  EE ELI  IQD  +L   K 
Sbjct: 234  ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293

Query: 1025 KLQSQFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGL 846
            KLQSQF REPT  EWA A+GLS   L+SE+ S   SREKLINAN R+VV++AKQYQGRG+
Sbjct: 294  KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353

Query: 845  NLKDLLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNL 666
             L DLLQEGSMGLMKSVEKFKPQAGCRF SYAYWW+RQ IRKAIFQHSRTIRLPEN+Y L
Sbjct: 354  GLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413

Query: 665  HAKVLEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITY 486
             ++VLEA++ +IQEG+H+P  E+LA RVGIT EKL+ L+ + R PLSMQQ VW DQ  T+
Sbjct: 414  LSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473

Query: 485  QEVTADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIG 306
            QE+TADT +E PD+  ++QLMR+H+RNLL  L P+E  IV+LR+GI    GK +SLSE+G
Sbjct: 474  QEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEVG 531

Query: 305  ALFGLSKERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
             +FGLSKERVRQ+ESRAL +LK+SL       Y DLL+
Sbjct: 532  NIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  516 bits (1329), Expect = e-143
 Identities = 296/579 (51%), Positives = 380/579 (65%), Gaps = 24/579 (4%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYN------NASCSSSVPVINEQTS-FVPSTSSTSLLRQF 1698
            MEA  NLLSS  SFP RT  +++      ++S SS+V + NEQ++  V S  ++S+ R F
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 1697 PTSAHSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLL 1518
            PTS    EQRDE +P   + +EDKT Q  +T D   +E   F  +  +S     GD D L
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQ--ATSDSRNMETEAFFVEEKNS-----GDLDQL 113

Query: 1517 LSD-------WPGLSFLLPSLGNEDHPSSAAVSKSMN---LKSSDVIXXXXXXXXXXXXX 1368
            + D       WP L  L P +   + PS +   +S++    +S D               
Sbjct: 114  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALS 173

Query: 1367 XXXXXXXXXLDVDLDGPFSSRLSNSSKV-----TPKIVRSSRLFERRAKKRRSSTPRV-N 1206
                      +  L+G   + +S +S +       K VRS++  ERR+KKR+ S P+V N
Sbjct: 174  ASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTN 233

Query: 1205 YELGSSEKTE-SRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVK 1029
            +E  +S K    ++LSEG+D NDPLRLFLWGPET++LLT  EE ELI  IQD  +L   K
Sbjct: 234  HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 293

Query: 1028 GKLQSQFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRG 849
             KLQSQF REPT  EWA A+GLS   L+SE+ S   SREKLINAN R+VV++AKQYQGRG
Sbjct: 294  SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 353

Query: 848  LNLKDLLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYN 669
            + L DLLQEGSMGLMKSVEKFKPQAGCRF SYAYWW+RQ IRKAIFQHSRTIRLPEN+Y 
Sbjct: 354  IGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 413

Query: 668  LHAKVLEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGIT 489
            L ++VLEA++ +IQEG+H+P  E+LA RVGIT EKL+ L+ + R PLSMQQ VW DQ  T
Sbjct: 414  LLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 473

Query: 488  YQEVTADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEI 309
            +QE+TADT +E PD+  ++QLMR+H+RNLL  L P+E  IV+LR+GI    GK +SLSE+
Sbjct: 474  FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEV 531

Query: 308  GALFGLSKERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            G +FGLSKERVRQ+ESRAL +LK+SL       Y DLL+
Sbjct: 532  GNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  513 bits (1321), Expect = e-142
 Identities = 292/572 (51%), Positives = 373/572 (65%), Gaps = 17/572 (2%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSSTSLLRQFPTSAHSH 1677
            MEA  NLLSS  SFP RT  +++ +S +SS    +     V S  ++S+ R FPTS    
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSS--SSSAPAVASVPTSSVARHFPTSVLLQ 58

Query: 1676 EQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSD---- 1509
            EQRDE +P   + +EDKT Q  +T D   +E   F  +  +S     GD D L+ D    
Sbjct: 59   EQRDEYRPLLHMFKEDKTSQ--ATSDSRNMETEAFFVEEKNS-----GDLDQLVQDLEHQ 111

Query: 1508 ---WPGLSFLLPSLGNEDHPSSAAVSKSMN---LKSSDVIXXXXXXXXXXXXXXXXXXXX 1347
               WP L  L P +   + PS +   +S++    +S D                      
Sbjct: 112  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 171

Query: 1346 XXLDVDLDGPFSSRLSNSSKV-----TPKIVRSSRLFERRAKKRRSSTPRV-NYELGSSE 1185
               +  L+G   + +S +S +       K VRS++  ERR+KKR+ S P+V N+E  +S 
Sbjct: 172  LAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSR 231

Query: 1184 KTE-SRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQF 1008
            K    ++LSEG+D NDPLRLFLWGPET++LLT  EE ELI  IQD  +L   K KLQSQF
Sbjct: 232  KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 291

Query: 1007 DREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLL 828
             REPT  EWA A+GLS   L+SE+ S   SREKLINAN R+VV++AKQYQGRG+ L DLL
Sbjct: 292  GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 351

Query: 827  QEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLE 648
            QEGSMGLMKSVEKFKPQAGCRF SYAYWW+RQ IRKAIFQHSRTIRLPEN+Y L ++VLE
Sbjct: 352  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 411

Query: 647  ARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTAD 468
            A++ +IQEG+H+P  E+LA RVGIT EKL+ L+ + R PLSMQQ VW DQ  T+QE+TAD
Sbjct: 412  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 471

Query: 467  TNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLS 288
            T +E PD+  ++QLMR+H+RNLL  L P+E  IV+LR+GI    GK +SLSE+G +FGLS
Sbjct: 472  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLS 529

Query: 287  KERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            KERVRQ+ESRAL +LK+SL       Y DLL+
Sbjct: 530  KERVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  511 bits (1317), Expect = e-142
 Identities = 295/559 (52%), Positives = 370/559 (66%), Gaps = 5/559 (0%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQ-TSFVPSTSSTSLLRQFPTSAHS 1680
            MEA   LLSSS SFP RTH +    S +SSV ++ EQ T  V S  +TS  + FPTS   
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKN---SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLL 57

Query: 1679 HEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQ--GDYDLLLSDW 1506
             EQRDE +P  ++ +ED+  Q  +TLDR K E GT   +  DS    Q   +++  L  W
Sbjct: 58   QEQRDEFRPLQNIFKEDRASQ--ATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHW 115

Query: 1505 PGLSFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXLDVDL 1326
            P    L   L + +  +   ++K     S                           + DL
Sbjct: 116  PAYWNLTDKLIDVEPTNVINLAKRALSASKHAAFLADN------------------NTDL 157

Query: 1325 DGPFSSRLSNSSKVTPKIVRSSRLFERRAKKRRS-STPRVNYELGSSEKTE-SRRLSEGY 1152
            D   S+  S+ S    KIVRS R   R++  RR+  T  + +E   S+  +  +RLS+G+
Sbjct: 158  DNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKRLSQGF 217

Query: 1151 DPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDREPTFAEWAHA 972
            DPNDPLRLFLWGPETKQLLT +EE ELI  IQD   L  VK +L+SQF REPT  EWA A
Sbjct: 218  DPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQA 277

Query: 971  VGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEGSMGLMKSVE 792
            VGLS   L+ ++ S  RSREKLINAN RMVV+IAK+YQ RGL L+DLLQEG++GLMKS+E
Sbjct: 278  VGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIE 337

Query: 791  KFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARKSFIQEGHHN 612
            KFKPQAGCRF +YAYWWIRQ I KAIFQHSRTIRLPEN+Y L  KV+EA++S+IQEG+H 
Sbjct: 338  KFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQ 397

Query: 611  PTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNIENPDVCAER 432
            PT+EE+A RVGI  +KL+ LL   R PLSMQQ+VW+DQ  T+QE+TADT IE PD+   +
Sbjct: 398  PTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAK 457

Query: 431  QLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKERVRQIESRAL 252
            QLMRKHIR LL  L+ +E +I++LR+GI    GK++SLSEIG +FGLSKERVRQ+ESRAL
Sbjct: 458  QLMRKHIRGLLNILSLKERRIIRLRFGIED--GKQKSLSEIGNVFGLSKERVRQLESRAL 515

Query: 251  LKLKESLNSHGLMAYTDLL 195
             KLK+ + SHGL AY DLL
Sbjct: 516  YKLKQCVGSHGLDAYADLL 534


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  511 bits (1317), Expect = e-142
 Identities = 295/559 (52%), Positives = 370/559 (66%), Gaps = 5/559 (0%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQ-TSFVPSTSSTSLLRQFPTSAHS 1680
            MEA   LLSSS SFP RTH +    S +SSV ++ EQ T  V S  +TS  + FPTS   
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKN---SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLL 57

Query: 1679 HEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQ--GDYDLLLSDW 1506
             EQRDE +P  ++ +ED+  Q  +TLDR K E GT   +  DS    Q   +++  L  W
Sbjct: 58   QEQRDEFRPLQNIFKEDRASQ--ATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHW 115

Query: 1505 PGLSFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXLDVDL 1326
            P    L   L + +  +   ++K     S                           + DL
Sbjct: 116  PAYWNLTDKLIDVEPTNVINLAKRALSASKHAAFLADN------------------NTDL 157

Query: 1325 DGPFSSRLSNSSKVTPKIVRSSRLFERRAKKRRS-STPRVNYELGSSEKTE-SRRLSEGY 1152
            D   S+  S+ S    KIVRS R   R++  RR+  T  + +E   S+  +  +RLS+G+
Sbjct: 158  DNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLSQGF 217

Query: 1151 DPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDREPTFAEWAHA 972
            DPNDPLRLFLWGPETKQLLT +EE ELI  IQD   L  VK +L+SQF REPT  EWA A
Sbjct: 218  DPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQA 277

Query: 971  VGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEGSMGLMKSVE 792
            VGLS   L+ ++ S  RSREKLINAN RMVV+IAK+YQ RGL L+DLLQEG++GLMKS+E
Sbjct: 278  VGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIE 337

Query: 791  KFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARKSFIQEGHHN 612
            KFKPQAGCRF +YAYWWIRQ I KAIFQHSRTIRLPEN+Y L  KV+EA++S+IQEG+H 
Sbjct: 338  KFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQ 397

Query: 611  PTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNIENPDVCAER 432
            PT+EE+A RVGI  +KL+ LL   R PLSMQQ+VW+DQ  T+QE+TADT IE PD+   +
Sbjct: 398  PTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAK 457

Query: 431  QLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKERVRQIESRAL 252
            QLMRKHIR LL  L+ +E +I++LR+GI    GK++SLSEIG +FGLSKERVRQ+ESRAL
Sbjct: 458  QLMRKHIRGLLNILSLKERRIIRLRFGIED--GKQKSLSEIGNVFGLSKERVRQLESRAL 515

Query: 251  LKLKESLNSHGLMAYTDLL 195
             KLK+ + SHGL AY DLL
Sbjct: 516  YKLKQCVGSHGLDAYADLL 534


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  509 bits (1311), Expect = e-141
 Identities = 290/563 (51%), Positives = 377/563 (66%), Gaps = 8/563 (1%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVP----VINEQT-SFVPSTSSTSLLRQFPT 1692
            ME A   LSS   FP RTHF+ + +S  + V     +++EQ    V S  +TS+ R FPT
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 1691 SAHSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLS 1512
            S    EQRDE +P  ++ +EDKT Q  +T+D  +++ GT  Q+ + S +  Q    L+L 
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQ--ATVDTKQMDPGTSDQEGICSDVLDQ----LILH 114

Query: 1511 DWPGLSFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXLDV 1332
                 S  + S+       +    + M ++ ++VI                      LD 
Sbjct: 115  SNLSWSLTMQSI-------TTNTDELMVVEPTNVIDLARKALSASKEAALLAQKCANLDD 167

Query: 1331 DLD-GPFSSRLSNSSKVTPKIVRSSRLFERRAKKRR-SSTPRVNYELGSSEKTE-SRRLS 1161
             +  G   + LSN S    K VRS+R  ER++K RR + T  + +E  SS +    ++++
Sbjct: 168  TVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKIN 227

Query: 1160 EGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDREPTFAEW 981
            EG+DP DPLRLFLWGPETKQLLT +EE+ELIG +QD   L  VK K + QF R+PT  EW
Sbjct: 228  EGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEW 287

Query: 980  AHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEGSMGLMK 801
            A AVGLS   ++S++ S  RSREKLINAN RMVV+IAKQYQGRGL+L+DLLQEGSMGLMK
Sbjct: 288  ADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMK 347

Query: 800  SVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARKSFIQEG 621
            S+EKFKPQ GCRF +YAYWWIRQ +RKAIFQHSRTIRLPEN+Y+   KV EA++S+I EG
Sbjct: 348  SIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEG 407

Query: 620  HHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNIENPDVC 441
            +HNPT EELA R+GIT  +L+ LL + R PLSMQQ+VW DQ  T+QE+TAD  +E P++C
Sbjct: 408  NHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELC 467

Query: 440  AERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKERVRQIES 261
              +QLMRKH+ +LL  L PRE KI++LRYGI    GK++SLSEIG++FGLSKERVRQ+ES
Sbjct: 468  VAKQLMRKHVLSLLNILNPRERKIIRLRYGIED--GKKKSLSEIGSVFGLSKERVRQLES 525

Query: 260  RALLKLKESLNSHGLMAYTDLLL 192
            RAL KLK+ L SHGL AY DLL+
Sbjct: 526  RALYKLKQCLASHGLEAYADLLV 548


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  507 bits (1305), Expect = e-141
 Identities = 300/569 (52%), Positives = 378/569 (66%), Gaps = 14/569 (2%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYN--NASCSSSVPVINEQTS-FVPSTSSTSLLRQFPTSA 1686
            MEA  + LSSSS+FP  T  R+    +S S+SV +++EQ +  V S  ++ + R FPTS 
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 1685 HSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSDW 1506
               EQRDE KP   + +E+K  Q  +TLDR +IEN T  +           D+  L+ D+
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQ--ATLDRIQIENTTAEEDF------NIDDFYKLVKDF 112

Query: 1505 PGLSFLLPSLGNEDHPSSAAVSKS------MNLKSSDVIXXXXXXXXXXXXXXXXXXXXX 1344
              L  + PS   E+ P+ +A+  +      M+++ SDV+                     
Sbjct: 113  RQLH-VTPSQIGENSPTGSALESNTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSK 171

Query: 1343 XLDVDLDGPFSSRLSNSSKVTPKIVRSSRLFERRAK---KRRSSTPRV-NYELGSSEKTE 1176
             +   L+   S  L    +     VRS++L ERR K   KR     +V NYE  SS  ++
Sbjct: 172  SISAGLNESTSLGLGWEEET----VRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNSSD 227

Query: 1175 SRR-LSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDRE 999
             RR   EG +PNDPLRLFLWGPET+QLLT++EE ELI  +QD  KL AVK +LQSQF RE
Sbjct: 228  LRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQFGRE 287

Query: 998  PTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEG 819
            PT  EWA AVG+S   L+S++     SREKLI +N RMVV+IAKQYQGRGL L+DLLQEG
Sbjct: 288  PTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLLQEG 347

Query: 818  SMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARK 639
            SMGLMKSVEKFKPQAGCRF +YAYWW+RQ IRKAIFQHSRTIRLPEN+Y L  KVLEA+K
Sbjct: 348  SMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLEAKK 407

Query: 638  SFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNI 459
            S+IQEG+ NP+ EELA RVG++ EKL  LL   R P+SMQQ+VW DQ  T+QEVTADT I
Sbjct: 408  SYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEVTADTGI 467

Query: 458  ENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKER 279
            E PD+   +QLMR+H+RNLL +L  RE +I++LRYGI    GK++SL+EIG +FGLSKER
Sbjct: 468  EIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIED--GKQRSLTEIGEIFGLSKER 525

Query: 278  VRQIESRALLKLKESLNSHGLMAYTDLLL 192
            VRQ+ESRA LKLKESL S GL AY  LL+
Sbjct: 526  VRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  505 bits (1300), Expect = e-140
 Identities = 294/578 (50%), Positives = 375/578 (64%), Gaps = 23/578 (3%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYN-----NASCSSSVPVINEQTS-FVPSTSSTSLLRQFP 1695
            MEA  NLLSS  SFP RT  +++     ++S SSSV + NEQ++  V S  ++S+ R FP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 1694 TSAHSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLL 1515
            TS    EQRDE +P   + +EDKT Q  +T D   +E   F  +  +S     GD D L+
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQ--ATSDSRNMETEAFFVEEKNS-----GDLDQLV 113

Query: 1514 SD-------WPGLSFLLPSLGNEDHPSSAAVSKSMN---LKSSDVIXXXXXXXXXXXXXX 1365
             D       WP L  L P +   + PS +   +S++    +S D                
Sbjct: 114  QDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173

Query: 1364 XXXXXXXXLDVDLDGPFSSRLSNSSKV-----TPKIVRSSRLFERRAKKRRSSTPRV-NY 1203
                     +  L+G   + +S +S +       K VRS+R  ERR+KKR+ S P+V N+
Sbjct: 174  SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNH 233

Query: 1202 ELGSSEKTE-SRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKG 1026
            E  +S K    ++LSEG+DPNDPLRLFLWGPET++LLT  EE ELI  IQD  +L   K 
Sbjct: 234  ETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293

Query: 1025 KLQSQFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGL 846
            KLQSQF REPT         LS   L+SE+ S   SREKLINAN R+VV++AKQYQGRG+
Sbjct: 294  KLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353

Query: 845  NLKDLLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNL 666
             L DLLQEGSMGLMKSVEKFKPQAGCRF SYAYWW+RQ IRKAIFQHSRTIRLPEN+Y L
Sbjct: 354  GLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413

Query: 665  HAKVLEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITY 486
             ++VLEA++ +IQEG+H+P  E+LA RVGIT EKL+ L+ + R PLSMQQ VW DQ  T+
Sbjct: 414  LSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473

Query: 485  QEVTADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIG 306
            QE+TADT +E PD+  ++QLMR+H+RNLL  L P+E  IV+LR+GI    GK +SLSE+G
Sbjct: 474  QEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEVG 531

Query: 305  ALFGLSKERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
             +FGLSKERVRQ+ESRAL +LK+SL       Y DLL+
Sbjct: 532  NIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  502 bits (1293), Expect = e-139
 Identities = 290/572 (50%), Positives = 369/572 (64%), Gaps = 17/572 (2%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSSTSLLRQFPTSAHSH 1677
            MEA  NLLSS  SFP RT  +++ +S +SS       +S V S  ++S+ R FPTS    
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASS-----SSSSSVASVPTSSVARHFPTSVLLQ 55

Query: 1676 EQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSD---- 1509
            EQRDE +P   + +EDKT Q  +T D   +E   F  +  +S     GD D L+ D    
Sbjct: 56   EQRDEYRPLLHMFKEDKTSQ--ATSDSRNMETEAFFVEEKNS-----GDLDQLVQDLEHQ 108

Query: 1508 ---WPGLSFLLPSLGNEDHPSSAAVSKSMN---LKSSDVIXXXXXXXXXXXXXXXXXXXX 1347
               WP L  L P +   + PS +   +S++    +S D                      
Sbjct: 109  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 168

Query: 1346 XXLDVDLDGPFSSRLSNSSKV-----TPKIVRSSRLFERRAKKRRSSTPRV-NYELGSSE 1185
               +  L+G   + +S +S +       K VRS+R  ERR+KKR+ S P+V N+E  +S 
Sbjct: 169  LAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSR 228

Query: 1184 KTE-SRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQF 1008
            K    ++LSEG+DPNDPLRLFLWGPET++LLT  EE ELI  IQD  +L   K KLQSQF
Sbjct: 229  KASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 288

Query: 1007 DREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLL 828
             REPT         LS   L+SE+ S   SREKLINAN R+VV++AKQYQGRG+ L DLL
Sbjct: 289  GREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 348

Query: 827  QEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLE 648
            QEGSMGLMKSVEKFKPQAGCRF SYAYWW+RQ IRKAIFQHSRTIRLPEN+Y L ++VLE
Sbjct: 349  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 408

Query: 647  ARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTAD 468
            A++ +IQEG+H+P  E+LA RVGIT EKL+ L+ + R PLSMQQ VW DQ  T+QE+TAD
Sbjct: 409  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 468

Query: 467  TNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLS 288
            T +E PD+  ++QLMR+H+RNLL  L P+E  IV+LR+GI    GK +SLSE+G +FGLS
Sbjct: 469  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLS 526

Query: 287  KERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            KERVRQ+ESRAL +LK+SL       Y DLL+
Sbjct: 527  KERVRQLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  500 bits (1288), Expect = e-139
 Identities = 289/572 (50%), Positives = 368/572 (64%), Gaps = 17/572 (2%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSSTSLLRQFPTSAHSH 1677
            MEA  NLLSS  SFP RT  +++ +S +SS    +     V S  ++S+ R FPTS    
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSS--SSSAPAVASVPTSSVARHFPTSVLLQ 58

Query: 1676 EQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSD---- 1509
            EQRDE +P   + +EDKT Q  +T D   +E   F  +  +S     GD D L+ D    
Sbjct: 59   EQRDEYRPLLHMFKEDKTSQ--ATSDSRNMETEAFFVEEKNS-----GDLDQLVQDLEHQ 111

Query: 1508 ---WPGLSFLLPSLGNEDHPSSAAVSKSMN---LKSSDVIXXXXXXXXXXXXXXXXXXXX 1347
               WP L  L P +   + PS +   +S++    +S D                      
Sbjct: 112  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 171

Query: 1346 XXLDVDLDGPFSSRLSNSSKV-----TPKIVRSSRLFERRAKKRRSSTPRV-NYELGSSE 1185
               +  L+G   + +S +S +       K VRS+R  ERR+KKR+ S P+V N+E  +S 
Sbjct: 172  LAENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSR 231

Query: 1184 KTE-SRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQF 1008
            K    ++LSEG+DPNDPLRLFLWGPET++LLT  EE ELI  IQD  +L   K KLQSQF
Sbjct: 232  KASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 291

Query: 1007 DREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLL 828
             REPT         LS   L+SE+ S   SREKLINAN R+VV++AKQYQGRG+ L DLL
Sbjct: 292  GREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 351

Query: 827  QEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLE 648
            QEGSMGLMKSVEKFKPQAGCRF SYAYWW+RQ IRKAIFQHSRTIRLPEN+Y L ++VLE
Sbjct: 352  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 411

Query: 647  ARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTAD 468
            A++ +IQEG+H+P  E+LA RVGIT EKL+ L+ + R PLSMQQ VW DQ  T+QE+TAD
Sbjct: 412  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 471

Query: 467  TNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLS 288
            T +E PD+  ++QLMR+H+RNLL  L P+E  IV+LR+GI    GK +SLSE+G +FGLS
Sbjct: 472  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLS 529

Query: 287  KERVRQIESRALLKLKESLNSHGLMAYTDLLL 192
            KERVRQ+ESRAL +LK+SL       Y DLL+
Sbjct: 530  KERVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  479 bits (1234), Expect = e-132
 Identities = 288/571 (50%), Positives = 370/571 (64%), Gaps = 17/571 (2%)
 Frame = -2

Query: 1856 MEAA-INLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFV-PSTSSTSLLRQFPTSAH 1683
            MEAA  NLLSS  +F  +T  R    +CSSSV +++E  + V  S   T L R  P SA 
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLR----NCSSSVLMLHEHAAPVLSSVPHTYLGRYVPASAI 56

Query: 1682 SHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQG--DYDLLLSD 1509
              EQ  E +    +++E+KT    +T+DR  +E  +   +  D+    Q      + L  
Sbjct: 57   GPEQHFENRLQLHLVKEEKTSL--ATIDRRLVEAASSELEENDAVDSEQNINALQVQLLH 114

Query: 1508 WPGLSFLLPS--------LGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXX 1353
            WPG S+  P         L     P  +   K MN +   V+                  
Sbjct: 115  WPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASKEAALLAE 174

Query: 1352 XXXXLDVDLDGP--FSSRLSNSSKVTPKIVRSSRLFERRAKKRRSSTP--RVNYELGSSE 1185
                LD D   P   S+ L +      + VRS+R  ER+++KR +  P   V      S 
Sbjct: 175  DSKLLD-DSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSG 233

Query: 1184 KTESRR-LSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQF 1008
            + + RR ++E  D NDPLR+FLWGPETKQLLT +EE+ELI  IQ   KL  VK +LQ QF
Sbjct: 234  RPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQF 293

Query: 1007 DREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLL 828
             REPT  EWA A G++S  L+S++LS K SREKLINAN RMVV+IAKQYQGRGLNL+DLL
Sbjct: 294  AREPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLL 353

Query: 827  QEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLE 648
            QEGSMGLMKSVEKFKPQAGCRFP+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y L +KV +
Sbjct: 354  QEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKD 413

Query: 647  ARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTAD 468
            A++  I++G+ +PT E++A   G++ E+LQNLLS +R PLSMQQSVW+DQ  T+QE+TAD
Sbjct: 414  AKRECIRQGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITAD 473

Query: 467  TNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLS 288
              IE P++   +QLMR+HIR LL  L+P+E KI++LR+GIG   GK +SLSEIGA+FGLS
Sbjct: 474  NAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGD--GKPKSLSEIGAVFGLS 531

Query: 287  KERVRQIESRALLKLKESLNSHGLMAYTDLL 195
            KERVRQ+E+RAL KLK++LN HGL AY+DLL
Sbjct: 532  KERVRQLETRALYKLKQNLNKHGLDAYSDLL 562


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  477 bits (1227), Expect = e-132
 Identities = 279/576 (48%), Positives = 363/576 (63%), Gaps = 22/576 (3%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFR-YNNASCSSSVPVINEQTS----FVPSTSSTSLLRQFPT 1692
            MEA +NLLSSSS F  R H R +   SCSS+    +  +S      P  +S +  R F T
Sbjct: 1    MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPA--RYFST 58

Query: 1691 SAHSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLL- 1515
            S  S EQ  EC+P   +L++D++ Q+  TL+R  IE    + +       ++ D+D L+ 
Sbjct: 59   SFLSQEQHHECRPQSQILKDDRSSQM--TLERRLIERSVPIDEG------SRDDHDHLIW 110

Query: 1514 ------SDWPGLSFLLPSLGNEDHPSSAAVSKSMNL--------KSSDVIXXXXXXXXXX 1377
                   +WPGL    P +  E++  S+   +S N         +  +VI          
Sbjct: 111  ELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSAS 170

Query: 1376 XXXXXXXXXXXXLDVDLDGPFSSRLSNSSKVTPKIVRSSRLFERRAKKRR--SSTPRVNY 1203
                        +   LD    S L +S     + VRS+RL +RR+KKR+       ++ 
Sbjct: 171  KQAALLVDETELVGTSLD---YSSLDDSLSKEGRTVRSTRLQDRRSKKRKVPKHVTTIDE 227

Query: 1202 ELGSSEKTESRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGK 1023
                  K   R+ SE +DPNDPLRLFLWGPETK+LLT QEE+ELI  IQD   L  VK +
Sbjct: 228  ISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKAR 287

Query: 1022 LQSQFDREPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLN 843
            LQSQFDREPT  EWA A+G++   L+S++  ++ SREKLINAN RMVV+IAKQYQGRGL+
Sbjct: 288  LQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLS 347

Query: 842  LKDLLQEGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLH 663
            L DLLQ GS+GLMKSVEKFKPQAGCRF SYAYWWIR  I KAIFQHSRTIRLPEN+Y L 
Sbjct: 348  LHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALL 407

Query: 662  AKVLEARKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQ 483
             KV EA+  F++ G++ P+ EELA RVGIT E+   L+ + R P S+QQ VW DQ  T+Q
Sbjct: 408  GKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQ 467

Query: 482  EVTADTNIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGA 303
            E+TAD+ ++ PDV  ER+LMR+HIRNLL  L+P+E +I++LR+GI    G+ ++L EIG 
Sbjct: 468  EITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIED--GREKTLLEIGN 525

Query: 302  LFGLSKERVRQIESRALLKLKESLNSHGLMAYTDLL 195
            +FGLSKERVRQ+E+RAL KLK   NS GL AY DLL
Sbjct: 526  MFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL 561


>ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
            gi|312282671|dbj|BAJ34201.1| unnamed protein product
            [Thellungiella halophila] gi|557112045|gb|ESQ52329.1|
            hypothetical protein EUTSA_v10016472mg [Eutrema
            salsugineum]
          Length = 547

 Score =  476 bits (1224), Expect = e-131
 Identities = 285/562 (50%), Positives = 364/562 (64%), Gaps = 7/562 (1%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTS--FVPSTSSTSLLRQFPTSAH 1683
            MEA  NL+SSS SF  +TH + +  S  SSV +++EQT+   V S   TSL R FP S  
Sbjct: 1    MEATRNLVSSSPSFQTKTHLK-SGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFPASVL 59

Query: 1682 SHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSDWP 1503
            S E R+E KP    LRED+T QL  TL+R + +    V    D   + Q      L    
Sbjct: 60   SQELREESKPLSHALREDRTSQL--TLERRQFDE--LVSSREDEKFEQQ------LLHSA 109

Query: 1502 GLSFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXLDVDLD 1323
            GL  LL S    +    A VS S +    D++                         D  
Sbjct: 110  GLWNLLISPLTTEKQLPAVVSPSADADLCDLVALAQKALSASKQAALLVENSEADPPD-- 167

Query: 1322 GPFSSRLSNSSKVTPK---IVRSSRLFERRAKKRRS-STPRVNYELGSSEKTESRR-LSE 1158
             P  S  ++SS   P+   IVRS R  ERRAK RR+  +  ++ E    +K  +++ + +
Sbjct: 168  NPRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYVPQKINAKKKMKQ 227

Query: 1157 GYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDREPTFAEWA 978
            G+D +D L+LFLWGPETKQLLT +EE ELI  IQ   KL  VK KL+SQ   EPT  EWA
Sbjct: 228  GFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWA 287

Query: 977  HAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEGSMGLMKS 798
             A+GLSS  L+SEI   + SREKLI AN R+VV+IAKQYQ RGLN +DLLQEGSMGLMKS
Sbjct: 288  EAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKS 347

Query: 797  VEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARKSFIQEGH 618
            VEKFKPQ+GCRF +YAYWWIRQ IRK+IFQ+SRTIRLPEN+Y L  KV EARK+ IQ+G+
Sbjct: 348  VEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGN 407

Query: 617  HNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNIENPDVCA 438
            + P+ E+LA  VG++ EKL  LL   R PLSMQQ +W+DQ  T+QEVT D+ IE P +  
Sbjct: 408  YRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGIETPSMSV 467

Query: 437  ERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKERVRQIESR 258
             +QLMR H+RNLL  L+P+E++I+KLR+GI    GK++SLSEIG ++GLSKERVRQ+ESR
Sbjct: 468  GKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDG--GKQRSLSEIGEIYGLSKERVRQLESR 525

Query: 257  ALLKLKESLNSHGLMAYTDLLL 192
            AL +LK++++SHGL AY DLL+
Sbjct: 526  ALYRLKQNMSSHGLNAYADLLV 547


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  473 bits (1217), Expect = e-130
 Identities = 284/570 (49%), Positives = 368/570 (64%), Gaps = 16/570 (2%)
 Frame = -2

Query: 1856 MEAA-INLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSSTSLL-RQFPTSAH 1683
            MEAA  NLLSS  +F  +T  R    +CSSSV +++E  + V S+   + L R  P SA 
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLR----NCSSSVLMLHEHAAPVLSSVPHAYLGRHVPASAI 56

Query: 1682 SHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQG--DYDLLLSD 1509
              EQ+ E +    +++E+KT    +T+DR  ++  +   +  D+    Q      + L  
Sbjct: 57   GPEQQFENRLQLHLVKEEKTSL--ATIDRRLVDAASSELEENDAVDSEQNINALQVQLLR 114

Query: 1508 WPGLSFLLPS--------LGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXX 1353
             PG S+  P         L     P  +   K MN +   V+                  
Sbjct: 115  CPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAE 174

Query: 1352 XXXXLDVDLDGP--FSSRLSNSSKVTPKIVRSSRLFERRAKKRRSSTP--RVNYELGSSE 1185
                LD D + P   S+ L +      + VRS+R  ER+++KR +  P  +V     S  
Sbjct: 175  DSKLLD-DSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGR 233

Query: 1184 KTESRRLSEGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFD 1005
                R+++E  D NDPLR+FLWGPETKQLLT +EE+ELI  IQ   KL  VK +LQ QF 
Sbjct: 234  PDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFA 293

Query: 1004 REPTFAEWAHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQ 825
             EPT  EWA A G++S  L+S++LS K SREKLINAN RMVV+IAKQYQGRGLNL+DLLQ
Sbjct: 294  HEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQ 353

Query: 824  EGSMGLMKSVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEA 645
            EGSMGLMKSVEKFKPQAGCRFP+YAYWWIRQ +RKAIFQHSRTIRLPEN+Y L +KV +A
Sbjct: 354  EGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDA 413

Query: 644  RKSFIQEGHHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADT 465
            +K  IQ+G+  PT E++A   G++ E+LQNLLS +R PLSMQQSVW+DQ  T+QE+TAD 
Sbjct: 414  KKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADN 473

Query: 464  NIENPDVCAERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSK 285
             IE P++   +QLMR+HIR LL  L+P+E KI++LR+GIG   GK +SLSEIG +FGLSK
Sbjct: 474  AIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGD--GKPKSLSEIGTVFGLSK 531

Query: 284  ERVRQIESRALLKLKESLNSHGLMAYTDLL 195
            ERVRQ+E+RAL KLK++LN HGL AY+DLL
Sbjct: 532  ERVRQLETRALYKLKQNLNKHGLDAYSDLL 561


>ref|XP_006410875.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
            gi|557112044|gb|ESQ52328.1| hypothetical protein
            EUTSA_v10016472mg [Eutrema salsugineum]
          Length = 546

 Score =  472 bits (1215), Expect = e-130
 Identities = 282/560 (50%), Positives = 358/560 (63%), Gaps = 5/560 (0%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTSFVPSTSSTSLLRQFPTSAHSH 1677
            MEA  NL+SSS SF  +TH +   +S SS +      T  V S   TSL R FP S  S 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKSGFSSPSSVMLHEQTATPVVNSRHLTSLSRHFPASVLSQ 60

Query: 1676 EQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSDWPGL 1497
            E R+E KP    LRED+T QL  TL+R + +    V    D   + Q      L    GL
Sbjct: 61   ELREESKPLSHALREDRTSQL--TLERRQFDE--LVSSREDEKFEQQ------LLHSAGL 110

Query: 1496 SFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXLDVDLDGP 1317
              LL S    +    A VS S +    D++                         D   P
Sbjct: 111  WNLLISPLTTEKQLPAVVSPSADADLCDLVALAQKALSASKQAALLVENSEADPPD--NP 168

Query: 1316 FSSRLSNSSKVTPK---IVRSSRLFERRAKKRRS-STPRVNYELGSSEKTESRR-LSEGY 1152
              S  ++SS   P+   IVRS R  ERRAK RR+  +  ++ E    +K  +++ + +G+
Sbjct: 169  RDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYVPQKINAKKKMKQGF 228

Query: 1151 DPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDREPTFAEWAHA 972
            D +D L+LFLWGPETKQLLT +EE ELI  IQ   KL  VK KL+SQ   EPT  EWA A
Sbjct: 229  DTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEA 288

Query: 971  VGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEGSMGLMKSVE 792
            +GLSS  L+SEI   + SREKLI AN R+VV+IAKQYQ RGLN +DLLQEGSMGLMKSVE
Sbjct: 289  MGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVE 348

Query: 791  KFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARKSFIQEGHHN 612
            KFKPQ+GCRF +YAYWWIRQ IRK+IFQ+SRTIRLPEN+Y L  KV EARK+ IQ+G++ 
Sbjct: 349  KFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYR 408

Query: 611  PTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNIENPDVCAER 432
            P+ E+LA  VG++ EKL  LL   R PLSMQQ +W+DQ  T+QEVT D+ IE P +   +
Sbjct: 409  PSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDSGIETPSMSVGK 468

Query: 431  QLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKERVRQIESRAL 252
            QLMR H+RNLL  L+P+E++I+KLR+GI    GK++SLSEIG ++GLSKERVRQ+ESRAL
Sbjct: 469  QLMRNHVRNLLNVLSPKEKRIIKLRFGIDG--GKQRSLSEIGEIYGLSKERVRQLESRAL 526

Query: 251  LKLKESLNSHGLMAYTDLLL 192
             +LK++++SHGL AY DLL+
Sbjct: 527  YRLKQNMSSHGLNAYADLLV 546


>ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Capsella rubella]
            gi|482562655|gb|EOA26845.1| hypothetical protein
            CARUB_v10022939mg [Capsella rubella]
          Length = 547

 Score =  471 bits (1213), Expect = e-130
 Identities = 283/563 (50%), Positives = 356/563 (63%), Gaps = 8/563 (1%)
 Frame = -2

Query: 1856 MEAAINLLSSSSSFPPRTHFRYNNASCSSSVPVINEQTS---FVPSTSSTSLLRQFPTSA 1686
            MEA  NL+SSS SF  +TH +  N S  S V +++EQT+    V S    SL R FP S 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLK--NYSSPSLVVMLHEQTATPVVVNSRHLNSLSRHFPASV 58

Query: 1685 HSHEQRDECKPFFSVLREDKTCQLPSTLDRNKIENGTFVQQHMDSTLQTQGDYDLLLSDW 1506
             S E R+E +P     RED+T QL  TL+R + +    V    D T + Q      L   
Sbjct: 59   LSQEPREESRPLSHAFREDRTSQL--TLERRQFDE--LVSSREDETFEQQ------LIQS 108

Query: 1505 PGLSFLLPSLGNEDHPSSAAVSKSMNLKSSDVIXXXXXXXXXXXXXXXXXXXXXXLDVDL 1326
             GL  LL S    +    AAVS   + +  DV+                         D 
Sbjct: 109  AGLWNLLISPITAEKQLPAAVSPLADAELCDVVALAQKALSASKQAALLADDTEANPSDN 168

Query: 1325 DGPFSSRLSNSSKVTPK---IVRSSRLFERRAKKRRS--STPRVNYELGSSEKTESRRLS 1161
             G   S  ++SS   P+   IVRS RL ERRAK RR+  S    N      +    ++  
Sbjct: 169  SG--DSLSTSSSMSLPEEGTIVRSKRLLERRAKNRRAPKSNDVDNEGYVPQKSNAKKKFK 226

Query: 1160 EGYDPNDPLRLFLWGPETKQLLTIQEENELIGAIQDFNKLVAVKGKLQSQFDREPTFAEW 981
            +G D +D L+LFLWGPETKQLLT +EE ELI  IQ   KL  VK KL+SQ   EPT  EW
Sbjct: 227  QGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEW 286

Query: 980  AHAVGLSSMALRSEILSWKRSREKLINANFRMVVYIAKQYQGRGLNLKDLLQEGSMGLMK 801
            A A+G+SS  L+SEI   + SREKLI AN R+VV+IAKQYQ RGLN +DLLQEGSMGLMK
Sbjct: 287  AEAMGISSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMK 346

Query: 800  SVEKFKPQAGCRFPSYAYWWIRQGIRKAIFQHSRTIRLPENMYNLHAKVLEARKSFIQEG 621
            SVEKFKPQ+GCRF +YAYWWIRQ IRK+IFQ+SRTIRLPEN+Y L  KV EARK+ +QEG
Sbjct: 347  SVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEG 406

Query: 620  HHNPTSEELALRVGITAEKLQNLLSLMRYPLSMQQSVWTDQGITYQEVTADTNIENPDVC 441
            ++ P+ E+LA  VG++ EKL  LL   R PLSMQQ +W+DQ  T+QE+T D+ IE P + 
Sbjct: 407  NYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIEIPTIS 466

Query: 440  AERQLMRKHIRNLLCSLTPREEKIVKLRYGIGSGTGKRQSLSEIGALFGLSKERVRQIES 261
              +QLMR H+RNLL  L+P+E  I+KLR+GI    GK++SLSEIG ++GLSKERVRQ+ES
Sbjct: 467  VGKQLMRNHVRNLLNVLSPKERSIIKLRFGIEG--GKQRSLSEIGEIYGLSKERVRQLES 524

Query: 260  RALLKLKESLNSHGLMAYTDLLL 192
            RAL +LK++++SHGL AY DLL+
Sbjct: 525  RALYRLKQNMSSHGLHAYADLLV 547