BLASTX nr result
ID: Achyranthes23_contig00003998
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes23_contig00003998
(925 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK26380.1| unknown [Picea sitchensis] 183 9e-44
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ... 180 8e-43
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 180 8e-43
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 180 8e-43
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 179 1e-42
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g... 177 4e-42
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi... 177 4e-42
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 176 1e-41
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun... 174 4e-41
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I... 172 2e-40
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S... 172 2e-40
ref|XP_001758014.1| predicted protein [Physcomitrella patens] gi... 171 3e-40
gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subun... 171 4e-40
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I... 171 4e-40
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S... 170 6e-40
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I... 170 6e-40
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I... 169 2e-39
ref|XP_002975900.1| hypothetical protein SELMODRAFT_104121 [Sela... 169 2e-39
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ... 168 2e-39
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ... 168 2e-39
>gb|ABK26380.1| unknown [Picea sitchensis]
Length = 145
Score = 183 bits (464), Expect = 9e-44
Identities = 88/141 (62%), Positives = 114/141 (80%)
Frame = +1
Query: 178 LLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATT 357
LLFEDIF +TRIDPDGKKFDKVSRIEA+S++FD Y+LLDVN+DVY ++ +++ + LA T
Sbjct: 4 LLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPT 63
Query: 358 LHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMMLK 537
L+LDGTPD GY+ Q R++LAD+YEYVM+G+ Y +++ S K EI SFGGLLM+LK
Sbjct: 64 LNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLMLLK 123
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + NFELDQRLFLLM++
Sbjct: 124 GDPSNAGNFELDQRLFLLMRK 144
>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Oryza brachyantha]
gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X3 [Oryza brachyantha]
gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X4
[Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 8B-like isoform X5 [Oryza brachyantha]
Length = 146
Score = 180 bits (456), Expect = 8e-43
Identities = 87/141 (61%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF +TR+DPDGKKFD+VSRIEA+S++FD Y+ LDV +VY + ++T+ LA TL
Sbjct: 5 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVLAPTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQ-EKGEIYVSFGGLLMMLK 537
+LDGTPD G+Y Q R+TLAD+Y+YVMHG+ Y++++ S GQ K EIY SFGGLLMMLK
Sbjct: 65 NLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLLMMLK 124
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + NFELDQRLFLL+++
Sbjct: 125 GDPSTAANFELDQRLFLLIRK 145
>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 180 bits (456), Expect = 8e-43
Identities = 87/141 (61%), Positives = 114/141 (80%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF +TR+DPDGKKFD+VSRIEA+S++FD Y+ LDV +VY + R+T+ LA TL
Sbjct: 255 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 314
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQ-EKGEIYVSFGGLLMMLK 537
+LDGTPDTG+Y Q R+TLAD+++YVMHG+ Y++++ S GQ K EIY SFGGLLMMLK
Sbjct: 315 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 374
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + +FELDQRLFLL+++
Sbjct: 375 GDPSSAASFELDQRLFLLIRK 395
>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein
OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 180 bits (456), Expect = 8e-43
Identities = 87/141 (61%), Positives = 114/141 (80%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF +TR+DPDGKKFD+VSRIEA+S++FD Y+ LDV +VY + R+T+ LA TL
Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQ-EKGEIYVSFGGLLMMLK 537
+LDGTPDTG+Y Q R+TLAD+++YVMHG+ Y++++ S GQ K EIY SFGGLLMMLK
Sbjct: 110 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLK 169
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + +FELDQRLFLL+++
Sbjct: 170 GDPSSAASFELDQRLFLLIRK 190
>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like [Citrus
sinensis] gi|557545143|gb|ESR56121.1| hypothetical
protein CICLE_v10022723mg [Citrus clementina]
Length = 146
Score = 179 bits (454), Expect = 1e-42
Identities = 88/145 (60%), Positives = 110/145 (75%)
Frame = +1
Query: 166 MSAPLLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIG 345
MS +LFEDIF + +IDPDGKKFDKVSRIEA S D Y+LLDVN ++Y + ++T+
Sbjct: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
Query: 346 LATTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLL 525
LA TL+LDGTPDTGYY R+TLAD+YEY+MHG+ +++ D S K EIYVS+GGLL
Sbjct: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLL 120
Query: 526 MMLKVDKSVSKNFELDQRLFLLMKR 600
MMLK D S +FELDQRLFLLM++
Sbjct: 121 MMLKGDPSYVSHFELDQRLFLLMRK 145
>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|29244685|gb|AAO73277.1| putative RNA polymerase
[Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
putative RNA polymerase [Oryza sativa Japonica Group]
gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
protein, expressed [Oryza sativa Japonica Group]
gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
protein OsJ_13351 [Oryza sativa Japonica Group]
gi|215692970|dbj|BAG88390.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 148
Score = 177 bits (450), Expect = 4e-42
Identities = 86/146 (58%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Frame = +1
Query: 172 APLLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLA 351
A LFEDIF +TR+DPDGKKFD+VSRIEA+SD+FD Y+ LDV DVY ++ R+T+ L
Sbjct: 2 AEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLV 61
Query: 352 TTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVA---DVDSDGQEKGEIYVSFGGL 522
TL+LDGTPD+ ++ Q R+TLAD+YEYVMHG+ Y+++ D +K E+Y SFGGL
Sbjct: 62 PTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGL 121
Query: 523 LMMLKVDKSVSKNFELDQRLFLLMKR 600
L+MLK D S + NFELDQRLFLLM++
Sbjct: 122 LVMLKGDPSSAANFELDQRLFLLMRK 147
>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
Length = 215
Score = 177 bits (450), Expect = 4e-42
Identities = 86/146 (58%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Frame = +1
Query: 172 APLLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLA 351
A LFEDIF +TR+DPDGKKFD+VSRIEA+SD+FD Y+ LDV DVY ++ R+T+ L
Sbjct: 69 AEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLV 128
Query: 352 TTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVA---DVDSDGQEKGEIYVSFGGL 522
TL+LDGTPD+ ++ Q R+TLAD+YEYVMHG+ Y+++ D +K E+Y SFGGL
Sbjct: 129 PTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGL 188
Query: 523 LMMLKVDKSVSKNFELDQRLFLLMKR 600
L+MLK D S + NFELDQRLFLLM++
Sbjct: 189 LVMLKGDPSSAANFELDQRLFLLMRK 214
>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Oryza brachyantha]
Length = 147
Score = 176 bits (446), Expect = 1e-41
Identities = 86/145 (59%), Positives = 115/145 (79%), Gaps = 2/145 (1%)
Frame = +1
Query: 172 APLLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLA 351
A LFEDIF +TR+DPDGKKFD+VSRIEA++++ + Y+ LDV DVY ++ ++T+ L
Sbjct: 2 AEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVLV 61
Query: 352 TTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVA-DVDSDGQE-KGEIYVSFGGLL 525
TL+LDGTPDTG++ Q R+TLAD+YEYVMHG+ Y+++ D ++ GQ K E+Y SFGGLL
Sbjct: 62 PTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGLL 121
Query: 526 MMLKVDKSVSKNFELDQRLFLLMKR 600
MMLK D S + NFELDQRLFLLM++
Sbjct: 122 MMLKGDPSSAANFELDQRLFLLMRK 146
>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
[Aegilops tauschii]
Length = 220
Score = 174 bits (441), Expect = 4e-41
Identities = 83/143 (58%), Positives = 114/143 (79%), Gaps = 3/143 (2%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF++TRIDPDGKKFD+V+RIEA+S++ + Y+ LD+ DVY ++ ++T+ LA TL
Sbjct: 5 LFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVLAPTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSD---GQEKGEIYVSFGGLLMM 531
+LDGTPDTGYY Q R+TLAD+Y+YVMHG+ Y++++ +S G K EIY SFGGLLM+
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGGLLML 124
Query: 532 LKVDKSVSKNFELDQRLFLLMKR 600
LK D S + N ELDQ+LFLL+++
Sbjct: 125 LKGDPSSAANLELDQKLFLLIRK 147
>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 172 bits (435), Expect = 2e-40
Identities = 85/141 (60%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF + RIDPDGKKFD+V+RIEA+S++F Y+ LDV VY ++ ++T+ LA TL
Sbjct: 5 LFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLAPTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQ-EKGEIYVSFGGLLMMLK 537
+LDGTPDTGYY Q R+TLAD+Y+YVMHG+ Y++++ S GQ K E Y SFGGLLM+LK
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLLMLLK 124
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + N ELDQRLFLLM++
Sbjct: 125 GDPSSAANLELDQRLFLLMRK 145
>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein
SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 172 bits (435), Expect = 2e-40
Identities = 81/140 (57%), Positives = 108/140 (77%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFED F + R+DPDGKKFD+VSR+EA+S++ Y+ LDV DVY + ++++ + LA TL
Sbjct: 5 LFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVLAPTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMMLKV 540
+LDGTPDTGYY Q R+TLAD YEYVMHG+ Y++++ S K EIY SFGGLLM+L+
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLMLLRG 124
Query: 541 DKSVSKNFELDQRLFLLMKR 600
D S + +FELDQRLFLLM++
Sbjct: 125 DPSTAASFELDQRLFLLMRK 144
>ref|XP_001758014.1| predicted protein [Physcomitrella patens]
gi|162690891|gb|EDQ77256.1| predicted protein
[Physcomitrella patens]
Length = 147
Score = 171 bits (434), Expect = 3e-40
Identities = 82/145 (56%), Positives = 113/145 (77%)
Frame = +1
Query: 166 MSAPLLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIG 345
M LLFEDIF I+++DPDGKKFDKVSRI A S++FD +LLDVN+D+Y ++K +++T+
Sbjct: 1 MGDTLLFEDIFTISQLDPDGKKFDKVSRIVAHSEQFDMDVLLDVNIDIYPLHKGEKFTLA 60
Query: 346 LATTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLL 525
LA+TL LDGT D G ++Q+ R++LAD+YEYVM+G+ Y+ AD +S G K E YVSFGGLL
Sbjct: 61 LASTLSLDGTMDDGTFDQSNRKSLADKYEYVMYGKVYKYADTESKGPPKVETYVSFGGLL 120
Query: 526 MMLKVDKSVSKNFELDQRLFLLMKR 600
M LK D + + LDQR++LLM++
Sbjct: 121 MCLKGDPNNLNSLVLDQRVYLLMRK 145
>gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Morus
notabilis]
Length = 187
Score = 171 bits (433), Expect = 4e-40
Identities = 85/145 (58%), Positives = 111/145 (76%)
Frame = +1
Query: 172 APLLFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLA 351
A LFEDIF I R++PDGKKFDKV+RIEA+S+KFD ++ LDV DVY +N+ +++++ L+
Sbjct: 2 AEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMALS 61
Query: 352 TTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMM 531
+TL+ DGTPDTGYY R+TLAD YEYVM G+ YR+A+ S K EI SFGGLLMM
Sbjct: 62 STLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAE-GSGHHGKAEIDASFGGLLMM 120
Query: 532 LKVDKSVSKNFELDQRLFLLMKRTE 606
LK D S K +ELDQRLFLL+++ +
Sbjct: 121 LKGDPSYFKKYELDQRLFLLIRKVD 145
>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 144
Score = 171 bits (433), Expect = 4e-40
Identities = 86/141 (60%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF ++RIDPDGKKFD+V+RIEA+S++ Y+ LDV DVY ++ ++T+ LA TL
Sbjct: 5 LFEDIFVVSRIDPDGKKFDRVNRIEARSEQM--YMQLDVATDVYPMHAGDKFTMVLAPTL 62
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQ-EKGEIYVSFGGLLMMLK 537
+LDGTPDTGYY Q R+TLAD+Y+YVMHG+ Y++++ S GQ K EIY SFGGLLM+LK
Sbjct: 63 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLLMLLK 122
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + N ELDQRLFLLM++
Sbjct: 123 GDPSSAANLELDQRLFLLMRK 143
>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein
SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 170 bits (431), Expect = 6e-40
Identities = 81/140 (57%), Positives = 107/140 (76%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFED F ++R+DPDGKKFDKVSR+EA+S++ Y+ LDV DVY + +++ + LA TL
Sbjct: 5 LFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVLAPTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMMLKV 540
+LDGTPDTGYY Q R+TLAD YEYVM G+ Y++++ S K EIY SFGGLLM+L+
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLMLLRG 124
Query: 541 DKSVSKNFELDQRLFLLMKR 600
D S + +FELDQRLFLLM++
Sbjct: 125 DPSTAASFELDQRLFLLMRK 144
>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3 isoform 2
[Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
protein product [Vitis vinifera]
Length = 145
Score = 170 bits (431), Expect = 6e-40
Identities = 79/140 (56%), Positives = 109/140 (77%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LF DIF + +IDPDGKKFDKVSRIEAQS++ D Y+ LDVN ++Y ++ +++ + LA+TL
Sbjct: 5 LFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMMLKV 540
LDGTPDTGYY Q R++LAD++EYVMHG+ Y++++ S KG IYVSFGGLLMML
Sbjct: 65 DLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSG 124
Query: 541 DKSVSKNFELDQRLFLLMKR 600
D + + +LDQR+FLL+++
Sbjct: 125 DPANTAKLDLDQRVFLLIRK 144
>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like isoform 1 [Solanum lycopersicum]
gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
isoform 2 [Solanum lycopersicum]
Length = 145
Score = 169 bits (427), Expect = 2e-39
Identities = 76/140 (54%), Positives = 113/140 (80%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF +T+ DPDGKKFD+V+RIEA+S++FD ++LLDVN ++Y + ++ + LA+TL
Sbjct: 5 LFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVLASTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMMLKV 540
+LDGTPDTGY+ Q +++LAD++EYVMHG+ YR+++ S K +I+VSFGGLLM L+
Sbjct: 65 NLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRG 124
Query: 541 DKSVSKNFELDQRLFLLMKR 600
D S++ FELDQ++FLL+++
Sbjct: 125 DPSIAAKFELDQKIFLLIRK 144
>ref|XP_002975900.1| hypothetical protein SELMODRAFT_104121 [Selaginella moellendorffii]
gi|300156176|gb|EFJ22805.1| hypothetical protein
SELMODRAFT_104121 [Selaginella moellendorffii]
Length = 147
Score = 169 bits (427), Expect = 2e-39
Identities = 85/146 (58%), Positives = 114/146 (78%), Gaps = 1/146 (0%)
Frame = +1
Query: 166 MSAPLLFEDIFNITRIDPDGKKFDK-VSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTI 342
M+ LLFEDIF IT ID DGKKFDK VSRIEA+S++FD ++LDVN+DVY I + ++T+
Sbjct: 1 MAELLLFEDIFTITGIDTDGKKFDKAVSRIEARSEQFDMQLVLDVNIDVYPIARTDKFTL 60
Query: 343 GLATTLHLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGL 522
L++TL LDGTPD G ++Q+ +++LAD+YEYVM+G+ Y+ D +S G K +YVSFGGL
Sbjct: 61 ALSSTLRLDGTPDDGVFDQSRKKSLADKYEYVMYGKLYKYDDDESGGAIKIGVYVSFGGL 120
Query: 523 LMMLKVDKSVSKNFELDQRLFLLMKR 600
LMMLK DK N +LDQRL+LLM++
Sbjct: 121 LMMLKGDKQHLGNLKLDQRLYLLMRK 146
>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Solanum tuberosum]
Length = 145
Score = 168 bits (426), Expect = 2e-39
Identities = 75/140 (53%), Positives = 113/140 (80%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFEDIF +T+ DPDGKKFD+V+RIEA+S++FD ++LLD+N ++Y + ++ + LA+TL
Sbjct: 5 LFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVLASTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVADVDSDGQEKGEIYVSFGGLLMMLKV 540
+LDGTPDTGY+ Q +++LAD++EYVMHG+ YR+++ S K +I+VSFGGLLM L+
Sbjct: 65 NLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRG 124
Query: 541 DKSVSKNFELDQRLFLLMKR 600
D S++ FELDQ++FLL+++
Sbjct: 125 DPSIAAKFELDQKIFLLIRK 144
>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
Length = 146
Score = 168 bits (426), Expect = 2e-39
Identities = 80/141 (56%), Positives = 109/141 (77%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 LFEDIFNITRIDPDGKKFDKVSRIEAQSDKFDAYILLDVNVDVYRINKDKRYTIGLATTL 360
LFED F +TR+DPDGKKFD+VSR+EA+S++ D Y+ LDV DVY ++ +++ + +A TL
Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTL 64
Query: 361 HLDGTPDTGYYNQTPRETLADRYEYVMHGRTYRVA-DVDSDGQEKGEIYVSFGGLLMMLK 537
+LDGTPDTGYY Q R+TLAD YEYVM G+ Y+++ D S K E+Y SFGGLLM+L+
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLR 124
Query: 538 VDKSVSKNFELDQRLFLLMKR 600
D S + +FELDQRLFLL+++
Sbjct: 125 GDPSTAASFELDQRLFLLIRK 145