BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes23_contig00000348
         (2226 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1065   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1065   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1058   0.0  
gb|EOY29337.1| DNA-directed RNA polymerase isoform 2 [Theobroma ...  1052   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1051   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1050   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1049   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1044   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1029   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1028   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1023   0.0  
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...  1022   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1020   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1019   0.0  
gb|ESW08936.1| hypothetical protein PHAVU_009G087100g [Phaseolus...  1019   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1019   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1015   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1010   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1008   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1006   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1065 bits (2755), Expect = 0.0
 Identities = 520/660 (78%), Positives = 584/660 (88%), Gaps = 6/660 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+ +L+     L+  L +CGMEKLV DT T+L GK+KV +DG+WV
Sbjct: 545  ENCGLVKNLAITGLVSTEVLDP----LVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWV 600

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC + +SFV EL        LP QVEIKRD Q  EVRIF D GRILRPLLVVENLKK+K
Sbjct: 601  GVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVK 660

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGKD---IKYTHCELDMSF 533
              KGD F+F++LLDK            DC TAWGIK+L   KG D   +KYTHCELDMSF
Sbjct: 661  TFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL--KGHDDPPVKYTHCELDMSF 718

Query: 534  LLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRS 713
            LLG+SCGIIP+ANHDHARRVLYQSEKHS QAIG+S+TNPNIR+DTLSHQ+YYPQRPLFR+
Sbjct: 719  LLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRT 778

Query: 714  VISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRT 884
            +ISDCLG+P    G   I+P+ E+FNGQ  IVAVNVHLGYNQEDSLVMNRASLERGMFR+
Sbjct: 779  MISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 838

Query: 885  EHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIII 1064
            EHIRSYK+EVDNNES +K+RK +DSV FGK+QSKIGRVD+LDDDGFPFIGANL +GDI+I
Sbjct: 839  EHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVI 898

Query: 1065 GRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQK 1244
            GRCAESG DHS+KLKHTERGMVQKVV+SANDDGKNFAVVSLRQVR+PCLGDKFSSMHGQK
Sbjct: 899  GRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQK 958

Query: 1245 GVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPF 1424
            GVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG L++ATPF
Sbjct: 959  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPF 1018

Query: 1425 STLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRN 1604
            STLSV+AI +QLHRAGFSRWG+ERVYNGRTGEM+RSLIFMGPTFYQRLIHMAEDKVKFRN
Sbjct: 1019 STLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRN 1078

Query: 1605 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCK 1784
            TGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDS+ MH+CR+CK
Sbjct: 1079 TGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCK 1138

Query: 1785 NIANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            NI+NVIQR+V GG+K+RGPYCR+CES +EIVK+NVPYGAKLLCQELFSMGISL+FET+LC
Sbjct: 1139 NISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1198


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1065 bits (2755), Expect = 0.0
 Identities = 525/659 (79%), Positives = 576/659 (87%), Gaps = 5/659 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS NILE     L+  L+  GMEK+ +D+ + L  KDKV ++GEWV
Sbjct: 549  ENCGLVKNLATTGLVSVNILEP----LIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEWV 604

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S  FV EL        LP QVEIKRD Q  EVRIF D GRILRPLLVV+NL KI+
Sbjct: 605  GVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIE 664

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFE--DKGKDIKYTHCELDMSFL 536
              KG   +F++LLDK            DC TAWGIKFL    D  + +KYTHCELDMSFL
Sbjct: 665  AFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFL 724

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQ++KHS QAIG+ +TNPNIR+DTLSHQ+YYPQRPLFR+V
Sbjct: 725  LGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTV 784

Query: 717  ISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 887
             SDCLG+P    G N I+PK E +NGQN IVAVNVHLGYNQEDSLVMNRASLERGMFR+E
Sbjct: 785  TSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 844

Query: 888  HIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIG 1067
            HIRSYKA+VDN E  +KRRK+DD+V FGKI SKIGRVD+LDDDGFPFIGANL SGDI+IG
Sbjct: 845  HIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIG 904

Query: 1068 RCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 1247
            RCAESG DHS+KLKHTERGMVQKVVLS+ND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKG
Sbjct: 905  RCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 964

Query: 1248 VLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFS 1427
            VLG+LESQENFPFT+QGIVPDIVINPH+FPSRQTPGQLLEAALGKGIACGG++KYATPFS
Sbjct: 965  VLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFS 1024

Query: 1428 TLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNT 1607
            TLSVEAIT QLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRLIHMAEDKVKFRNT
Sbjct: 1025 TLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNT 1084

Query: 1608 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKN 1787
            GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMH+C+KCKN
Sbjct: 1085 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKN 1144

Query: 1788 IANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            +ANVIQRAVPGG+KIRGPYCR CESVDEIVK+NVPYGAKLLCQELFSMGISL+FET LC
Sbjct: 1145 VANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFETRLC 1203


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1058 bits (2735), Expect = 0.0
 Identities = 514/659 (77%), Positives = 579/659 (87%), Gaps = 5/659 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+NI+E     ++  L + GME+LV DT + L GKDKV ++GEWV
Sbjct: 530  ENCGLVKNLATTGLVSTNIMES----IVDKLFDSGMEELVNDTCSSLDGKDKVFLNGEWV 585

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +SLSF  E+         P QVEIKRD    EVRIF D GRILRPLLVV+NL +IK
Sbjct: 586  GVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIK 645

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFED-KGKD-IKYTHCELDMSFL 536
              KG+ ++F+ LL+             DCRTAW IK+L  D +GK  +KYTHCELDMSFL
Sbjct: 646  AFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFL 705

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQ++KHS QAIG+S+TNPNIR+DTLSHQ+YYPQRPLFR++
Sbjct: 706  LGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM 765

Query: 717  ISDCLGE---PLGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 887
             SDCLG+   PLG+  +LPK E +NGQN IVAVNVHLGYNQEDSLVMNR+SLERGMFR+E
Sbjct: 766  TSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSE 825

Query: 888  HIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIG 1067
            H+RSYKAEVDN E  +KRRK +D V FGKIQSKIGRVD+LDDDGFP++GANL  GDI+IG
Sbjct: 826  HVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIG 885

Query: 1068 RCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 1247
            RCAESGADHS+KLKHTERGMVQKVVLS+NDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKG
Sbjct: 886  RCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKG 945

Query: 1248 VLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFS 1427
            VLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG++KYATPFS
Sbjct: 946  VLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFS 1005

Query: 1428 TLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNT 1607
            T+SV+AITEQLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRLIHMAEDKVKFRNT
Sbjct: 1006 TISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNT 1065

Query: 1608 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKN 1787
            GPVHPLTRQPVADRKR+GGIKFGEMERDCLIAHGASANLHERL TLSDSSQMHVCR CKN
Sbjct: 1066 GPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANLHERLVTLSDSSQMHVCRNCKN 1125

Query: 1788 IANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            +ANVI+RAVPGG+KIRGPYCR C+SVD+IV++NVPYGAKLLCQELFSMGI+L+FET+LC
Sbjct: 1126 VANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1184


>gb|EOY29337.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
          Length = 961

 Score = 1052 bits (2720), Expect = 0.0
 Identities = 514/663 (77%), Positives = 579/663 (87%), Gaps = 9/663 (1%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+NI+E     ++  L + GME+LV DT + L GKDKV ++GEWV
Sbjct: 303  ENCGLVKNLATTGLVSTNIMES----IVDKLFDSGMEELVNDTCSSLDGKDKVFLNGEWV 358

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +SLSF  E+         P QVEIKRD    EVRIF D GRILRPLLVV+NL +IK
Sbjct: 359  GVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIK 418

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFED-KGKD-IKYTHCELDMSFL 536
              KG+ ++F+ LL+             DCRTAW IK+L  D +GK  +KYTHCELDMSFL
Sbjct: 419  AFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFL 478

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQ++KHS QAIG+S+TNPNIR+DTLSHQ+YYPQRPLFR++
Sbjct: 479  LGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM 538

Query: 717  ISDCLGE---PLGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 887
             SDCLG+   PLG+  +LPK E +NGQN IVAVNVHLGYNQEDSLVMNR+SLERGMFR+E
Sbjct: 539  TSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSE 598

Query: 888  HIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIG 1067
            H+RSYKAEVDN E  +KRRK +D V FGKIQSKIGRVD+LDDDGFP++GANL  GDI+IG
Sbjct: 599  HVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIG 658

Query: 1068 RCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 1247
            RCAESGADHS+KLKHTERGMVQKVVLS+NDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKG
Sbjct: 659  RCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKG 718

Query: 1248 VLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFS 1427
            VLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG++KYATPFS
Sbjct: 719  VLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFS 778

Query: 1428 TLSVEAITEQL----HRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVK 1595
            T+SV+AITEQL    HRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRLIHMAEDKVK
Sbjct: 779  TISVDAITEQLHSICHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVK 838

Query: 1596 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCR 1775
            FRNTGPVHPLTRQPVADRKR+GGIKFGEMERDCLIAHGASANLHERL TLSDSSQMHVCR
Sbjct: 839  FRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANLHERLVTLSDSSQMHVCR 898

Query: 1776 KCKNIANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFET 1955
             CKN+ANVI+RAVPGG+KIRGPYCR C+SVD+IV++NVPYGAKLLCQELFSMGI+L+FET
Sbjct: 899  NCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNVPYGAKLLCQELFSMGINLKFET 958

Query: 1956 ELC 1964
            +LC
Sbjct: 959  QLC 961


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1051 bits (2718), Expect = 0.0
 Identities = 515/657 (78%), Positives = 577/657 (87%), Gaps = 3/657 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+ +L+     L+  L +CGMEKLV DT T+L GK+KV +DG+WV
Sbjct: 581  ENCGLVKNLAITGLVSTEVLDP----LVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWV 636

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC + +SFV EL        LP QVEIKRD Q  EVRIF D GRILRPLLVVENLKK+K
Sbjct: 637  GVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVK 696

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGKD---IKYTHCELDMSF 533
              KGD F+F++LLDK            DC TAWGIK+L   KG D   +KYTHCELDMSF
Sbjct: 697  TFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLL--KGHDDPPVKYTHCELDMSF 754

Query: 534  LLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRS 713
            LLG+SCGIIP+ANHDHARRVLYQSEKHS QAIG+S+TNPNIR+DTLSHQ+YYPQRPLFR+
Sbjct: 755  LLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRT 814

Query: 714  VISDCLGEPLGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHI 893
            +ISD           LP+ E+FNGQ  IVAVNVHLGYNQEDSLVMNRASLERGMFR+EHI
Sbjct: 815  MISD-----------LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 863

Query: 894  RSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRC 1073
            RSYK+EVDNNES +K+RK +DSV FGK+QSKIGRVD+LDDDGFPFIGANL +GDI+IGRC
Sbjct: 864  RSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRC 923

Query: 1074 AESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 1253
            AESG DHS+KLKHTERGMVQKVV+SANDDGKNFAVVSLRQVR+PCLGDKFSSMHGQKGVL
Sbjct: 924  AESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVL 983

Query: 1254 GYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFSTL 1433
            G+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG L++ATPFSTL
Sbjct: 984  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTL 1043

Query: 1434 SVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1613
            SV+AI +QLHRAGFSRWG+ERVYNGRTGEM+RSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1044 SVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1103

Query: 1614 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNIA 1793
            VHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDS+ MH+CR+CKNI+
Sbjct: 1104 VHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNIS 1163

Query: 1794 NVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            NVIQR+V GG+K+RGPYCR+CES +EIVK+NVPYGAKLLCQELFSMGISL+FET+LC
Sbjct: 1164 NVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1220


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1050 bits (2714), Expect = 0.0
 Identities = 511/656 (77%), Positives = 573/656 (87%), Gaps = 2/656 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+N+LE     L+  L+ CGMEKLV DT T LRGKDKV ++G+WV
Sbjct: 549  ENCGLVKNLATTGLVSTNVLES----LIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDWV 604

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +SLSFV EL        LP QVEIKRDV   EVRIF D GRILRPLLVVENL K+K
Sbjct: 605  GVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVK 664

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF-EDKGKDI-KYTHCELDMSFL 536
              KG   SF+  LD             DC TAWGIK+LF EDKGK   K+THCELDMSFL
Sbjct: 665  ASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFL 724

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIP+ANHDHARRVLYQ++KHS QAIG+S+TNPN+R+DTLSHQ++YPQRPLF+++
Sbjct: 725  LGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQTM 784

Query: 717  ISDCLGEPLGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHIR 896
             SDCLG+P   N+I+PK E++NGQN IVAVNVHLG+NQEDS+VMNRASLERGMFR+EHIR
Sbjct: 785  TSDCLGKPGRHNRIVPKPEYYNGQNAIVAVNVHLGFNQEDSIVMNRASLERGMFRSEHIR 844

Query: 897  SYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRCA 1076
            SYKAEVDN ES +KRRK DD V FGK+QSK GRVD+LDDDGFP++GANL SGDIIIGRC+
Sbjct: 845  SYKAEVDNKESLDKRRKPDDCVNFGKMQSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCS 904

Query: 1077 ESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG 1256
            ESGADHS+KLKHTERGMVQKV+LS+NDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG
Sbjct: 905  ESGADHSIKLKHTERGMVQKVLLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG 964

Query: 1257 YLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFSTLS 1436
            +LESQENFPFT QG+VPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+ +YATPFSTLS
Sbjct: 965  FLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLS 1024

Query: 1437 VEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTGPV 1616
            V+ IT+QLH AGFSRWGNERVYNG TG M+RSLIFMGPTFYQRLIHM+EDKVKFRNTGPV
Sbjct: 1025 VDDITDQLHSAGFSRWGNERVYNGATGAMVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPV 1084

Query: 1617 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNIAN 1796
            HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC+KCKN+A 
Sbjct: 1085 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVAY 1144

Query: 1797 VIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            VI R V GG+KIRGP+CR C+S D++V++NVPYGAKLLCQELFSMGISL+FET  C
Sbjct: 1145 VILRTVAGGRKIRGPHCRICDSADDLVRVNVPYGAKLLCQELFSMGISLKFETRFC 1200


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1049 bits (2713), Expect = 0.0
 Identities = 515/658 (78%), Positives = 578/658 (87%), Gaps = 5/658 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+NI E      L  L++ GMEKLV DT T L GK KV +DG WV
Sbjct: 365  ENCGLVKNLAITGLVSTNIEEH----FLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNWV 420

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S+SFV  L        +P QVEIKRD Q+ EVR+F D GRILRPLLVVENL KIK
Sbjct: 421  GVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIK 480

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF-EDKGK-DIKYTHCELDMSFL 536
              KG  +SF++LLDK            DCRTAWGI +LF E++ K  +KYTHCELDMSFL
Sbjct: 481  ASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFL 540

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+S  IIPFANHDHARRVLYQSEKHS QA+G+++TNPNIR+DT +HQ+YYPQRPLFR++
Sbjct: 541  LGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRTM 600

Query: 717  ISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 887
            +SDCLG+P   LG N I+P+AE+FNGQ  IVAVNVHLGYNQEDSLVMNRASLERGMFR+E
Sbjct: 601  VSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 660

Query: 888  HIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIG 1067
            HIRSYKA+VDN ES  K+ KF+DSV FGK+QSKIGRVD+LDDDGFPFIGANL +GDI++G
Sbjct: 661  HIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVVG 720

Query: 1068 RCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 1247
            RCAESGADHS+KLKHTERGMVQKVVLSAND+GKNFAVVSLRQVR+PCLGDKFSSMHGQKG
Sbjct: 721  RCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQKG 780

Query: 1248 VLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFS 1427
            VLG+LESQENFPFT QGIVPDIV+NPHAFPSRQTPGQLLEAALGKGIACGG  KYATPFS
Sbjct: 781  VLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPFS 840

Query: 1428 TLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNT 1607
            TLSV+A+T+QLHRAGFSRWG+ERVYNGRTGEMI SL+FMGPTFYQRL HM+EDKVKFRNT
Sbjct: 841  TLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRNT 900

Query: 1608 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKN 1787
            GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMH+CRKC N
Sbjct: 901  GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCNN 960

Query: 1788 IANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETEL 1961
            IANVIQRAVPGG+KIRGPYCRFCESV+EIV++NVPYGAKLL QELFSMGI+++F+TEL
Sbjct: 961  IANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSMGITMKFDTEL 1018


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1044 bits (2699), Expect = 0.0
 Identities = 517/655 (78%), Positives = 572/655 (87%), Gaps = 2/655 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TGVVS+NI E     L+  L + GMEKLV DT T+L GK KV ++GEWV
Sbjct: 538  ENCGLVKNLAVTGVVSTNISES----LVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWV 593

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S  FV EL        LP QVEIKRD Q  EVRIF D GRILRPLLVVENL KIK
Sbjct: 594  GVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIK 653

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFED-KGKD-IKYTHCELDMSFL 536
              KG  + F +LLDK            DC TAWGIKFL  D +GK  +KY+HCELDMSFL
Sbjct: 654  AFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFL 713

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQ++KHS QAIG+S+TNPNIR+DTLSHQ++YPQRPLFR++
Sbjct: 714  LGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTM 773

Query: 717  ISDCLGEPLGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHIR 896
            ISDCL        +LPK E FNGQN IVAVNVHLGYNQEDSLVMNRASLERGMFR+EHIR
Sbjct: 774  ISDCL--------VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 825

Query: 897  SYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRCA 1076
            SYKAEVDN E ++KRRK +DS+TFGKIQSKIGRVD+LDDDGFPFIGAN+ SGDI+IG+CA
Sbjct: 826  SYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCA 885

Query: 1077 ESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG 1256
            ESGADHSVKLKHTERGMVQKVVLS+ND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG
Sbjct: 886  ESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG 945

Query: 1257 YLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFSTLS 1436
            +LESQENFPFT QG+VPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+ +YATPFSTLS
Sbjct: 946  FLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLS 1005

Query: 1437 VEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTGPV 1616
            V+ I +QLHRA FSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL+HMAEDKVKFRNTGPV
Sbjct: 1006 VDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPV 1065

Query: 1617 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNIAN 1796
            HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSS+MH+C+KCKN+AN
Sbjct: 1066 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHICQKCKNVAN 1125

Query: 1797 VIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETEL 1961
            VIQR VPGG+KIRGPYCR CESVD++VK++VPYGAKLLCQELFSMGISL+F+T +
Sbjct: 1126 VIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAKLLCQELFSMGISLKFDTRV 1180


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1029 bits (2661), Expect = 0.0
 Identities = 503/658 (76%), Positives = 575/658 (87%), Gaps = 4/658 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN++ TG+VS+++ +   ++LL  LV+CGM++LV DT T L   DKVL++G+WV
Sbjct: 549  ENCGLVKNLSVTGLVSTDVTDVTESILL-KLVDCGMQELVDDTSTHLGSMDKVLLNGDWV 607

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S SFV EL        LP QVEIKRD    EVRI+ D GRILRPLLVV NL KIK
Sbjct: 608  GVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIK 667

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGK-DIKYTHCELDMSFLL 539
              K D +SF++LLDK            DC TAWG+++LF  +GK  +KYTHCELDMSFLL
Sbjct: 668  GFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDMSFLL 727

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
            G+SC ++PFANHDHARRVLYQS+KHS QAIG+S+TNPNIR+DTLSHQ++YPQ+PLFR++ 
Sbjct: 728  GLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMT 787

Query: 720  SDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEH 890
            SDCLG+P   LG+++I PKAEF+NGQN IVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH
Sbjct: 788  SDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEH 847

Query: 891  IRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGR 1070
            IRSYK+E+DN ESS+K+RK +D V F K+QSKIGRVD+LDDDGFP++GANL SGDIIIG+
Sbjct: 848  IRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGK 907

Query: 1071 CAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGV 1250
            CAESGAD+SVKLKHTERG VQKVVLS+ND+GKNFAVVSLRQVRSP LGDKFSSMHGQKGV
Sbjct: 908  CAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGV 967

Query: 1251 LGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFST 1430
            LG+LESQENFPFT+QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG LK ATPFST
Sbjct: 968  LGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFST 1027

Query: 1431 LSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTG 1610
             SV+AITEQLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL HM+EDKVKFRNTG
Sbjct: 1028 PSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTG 1087

Query: 1611 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNI 1790
            PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL+ERLFTLSDSSQ+H+C KCK +
Sbjct: 1088 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKKV 1147

Query: 1791 ANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            ANVI R V GG+KIRGPYCR CES D+IV  +VPYGAKLLCQELFSMGI+L+FET+LC
Sbjct: 1148 ANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1205


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1028 bits (2659), Expect = 0.0
 Identities = 503/657 (76%), Positives = 565/657 (85%), Gaps = 3/657 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGL+KN++ TG+VS N  +     +  TL  CGME LV +T T   GK ++ +DGEWV
Sbjct: 546  ENCGLIKNLSGTGLVSLNTKKS----ITPTLFRCGMENLVDNTSTSFCGKYRIFLDGEWV 601

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +SLSFV  +           QVE+KRD Q  EVRIF D GRILRPLLVVENL +I 
Sbjct: 602  GVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRID 661

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGKDIKYTHCELDMSFLLG 542
              KG+ ++F++LLDK            DCR AW IK L ED+G   KY+HCELDMSFLLG
Sbjct: 662  KSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLMEDEGTT-KYSHCELDMSFLLG 720

Query: 543  VSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVIS 722
            +SCG++PFANHDHARR L+QS+KHS QAIG+S TN N R+DTLSHQ++YPQRPLFR++ +
Sbjct: 721  LSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTA 780

Query: 723  DCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHI 893
            DCLG P        ILPK EF+NGQN IVAVNVHLGYNQEDSLVMNRASLERGMFR+EHI
Sbjct: 781  DCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 840

Query: 894  RSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRC 1073
            RSYKAEVDN ESSEKRRK DD++ FGK QSKIGRVD+LDDDGFP+IGANL SGDI+IGRC
Sbjct: 841  RSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRC 900

Query: 1074 AESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 1253
            AESGADHS+KLKHTE+GMVQKVVLS+NDDGKN+AVVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 901  AESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVL 960

Query: 1254 GYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFSTL 1433
            G+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG+LKYATPFST 
Sbjct: 961  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTP 1020

Query: 1434 SVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1613
            SV+AIT+QLHRAGFSRWG+ERVYNGRTGEM+RSLIFMGPTFYQRLIHMAEDKVKFRNTGP
Sbjct: 1021 SVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1080

Query: 1614 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNIA 1793
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVC+KCKN+A
Sbjct: 1081 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVA 1140

Query: 1794 NVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            +VIQR+V GG+K+RGPYCR CES D+IV++NVPYGAKLLCQELFSMGI+L+FET+LC
Sbjct: 1141 SVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1023 bits (2645), Expect = 0.0
 Identities = 503/657 (76%), Positives = 568/657 (86%), Gaps = 3/657 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+N+ E     +L  L  CGME+LV DT   L  KDKV ++G+WV
Sbjct: 547  ENCGLVKNMAVTGLVSTNVTES----ILPQLFACGMEELVDDTTAVLGNKDKVFLNGDWV 602

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC++S SFV EL        LP QVEIKRD    EVRI  D GRILRPLLVV NL KIK
Sbjct: 603  GVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVRILSDAGRILRPLLVVSNLLKIK 662

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGKD-IKYTHCELDMSFLL 539
              K D  SF++LLD             DC+TAWG+ +LF  +GK  +KYTHCELDMSFLL
Sbjct: 663  GSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVPYLFGKEGKSSVKYTHCELDMSFLL 722

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
            G+SC ++PFANHDHARRVLYQS+KHS QAIG+S+TNP+IR+D LSHQ++YPQ+PLF+++ 
Sbjct: 723  GLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDALSHQLFYPQKPLFQTMT 782

Query: 720  SDCLGEP--LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHI 893
            SDCLG+P  LG +++LPK+EF+NGQN IVAVNVHLGYNQEDSLVMNRASL+RGMFR+EHI
Sbjct: 783  SDCLGKPGYLGPSKLLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHI 842

Query: 894  RSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRC 1073
            RSYKAE +N ES+EK+RK +D V FGKIQSKIGRVD+LDDDGFPF+GANL  GDIIIGRC
Sbjct: 843  RSYKAENENKESTEKKRKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQIGDIIIGRC 902

Query: 1074 AESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 1253
            A+SGADHS+KLKHTERG VQKVVLS+ND+GKNFAVVSLRQVRSP LGDKFSSMHGQKGVL
Sbjct: 903  ADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVL 962

Query: 1254 GYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFSTL 1433
            G+LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC G+L+ ATPFST 
Sbjct: 963  GFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTS 1022

Query: 1434 SVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1613
            SVEAIT+QLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL HM+EDKVKFRNTGP
Sbjct: 1023 SVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGP 1082

Query: 1614 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNIA 1793
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL+ERLFTLSDSSQ+H+C KCKN+A
Sbjct: 1083 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVA 1142

Query: 1794 NVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            NVI R V GG+KIRGPYCRFCES D+IV  +VPYGAKLLCQELFSMGI+L+FETELC
Sbjct: 1143 NVILRPVSGGRKIRGPYCRFCESADDIVVAHVPYGAKLLCQELFSMGINLKFETELC 1199


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score = 1022 bits (2642), Expect = 0.0
 Identities = 502/657 (76%), Positives = 572/657 (87%), Gaps = 3/657 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TGVVS+++ E     +L  L +CGME+LV DT T L  KDKV ++G+WV
Sbjct: 585  ENCGLVKNLAVTGVVSTDVTES----ILPQLSDCGMEELVDDTTTVLGKKDKVFLNGDWV 640

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC++S+SFV EL        LP QVEIKRD    EVRI  D GRILRPLLVV NL KIK
Sbjct: 641  GVCSDSISFVAELRTRRRRNELPHQVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIK 700

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGKD-IKYTHCELDMSFLL 539
              K +  SF++LLD             D +TAWG+++LF  +GK  +KYTHCELDMSFLL
Sbjct: 701  GSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLL 760

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
            G+SC ++PFANHDHARRVLYQS+KHS QAIG+++TNPNIR+D LSHQ++YPQRPLF+++ 
Sbjct: 761  GLSCSLVPFANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQRPLFQTMT 820

Query: 720  SDCLGEP--LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHI 893
            SDCLG+P  LG+++++PK+EF+NGQN IVAVNVHLGYNQEDSLVMNRASL+RGMFR+EHI
Sbjct: 821  SDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHI 880

Query: 894  RSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRC 1073
            RSYKAE++N ESSEKR+K +D V FGKIQSKIGRVD+LDDDGFPF+GANL SGDIIIGRC
Sbjct: 881  RSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRC 940

Query: 1074 AESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 1253
            A+SG DHS+KLKHTERG VQKVVLS+ND+GKNFAVVSLRQVRSP LGDKFSSMHGQKGVL
Sbjct: 941  ADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVL 1000

Query: 1254 GYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFSTL 1433
            G+LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC G+L+ ATPFST 
Sbjct: 1001 GFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTS 1060

Query: 1434 SVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTGP 1613
            SVEAIT+QLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL HM+EDKVKFRNTGP
Sbjct: 1061 SVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGP 1120

Query: 1614 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNIA 1793
            VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL+ERLFTLSDSSQ+H+C KCKN+A
Sbjct: 1121 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVA 1180

Query: 1794 NVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            NVI R V GG+KIRGPYCRFCES D+IV  +VPYGAKLL QELFSMGI+L+FETELC
Sbjct: 1181 NVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC 1237


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1020 bits (2638), Expect = 0.0
 Identities = 502/658 (76%), Positives = 562/658 (85%), Gaps = 4/658 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A T +VS NI E     +L  L  CG+E+LV DT T L GK KV ++G+WV
Sbjct: 548  ENCGLVKNLATTALVSINISEP----ILPKLFKCGIEELVDDTYTSLAGKHKVFLNGDWV 603

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            G+C +S  FV +L        LP QVEIKRD    EVRIF D GRILRPLLVV+ LKKIK
Sbjct: 604  GICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIFSDAGRILRPLLVVQGLKKIK 663

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF-EDKGKDIKYTHCELDMSFLL 539
              KG+  +F+  LDK            DCRTAW IK+LF E++G  +KYTHCELDMSFLL
Sbjct: 664  AAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKYLFMEEQGSVVKYTHCELDMSFLL 723

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
            G+SCGIIPFANHDHARRVLYQS+KHS QAIGYS+TNPN+R+DTLSH ++YPQRPLFR++I
Sbjct: 724  GLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNPNLRVDTLSHNLHYPQRPLFRTMI 783

Query: 720  SDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEH 890
            +D LG+P   +G N  +PK E+FNGQN IVAVNVHLGYNQEDS+VMNRASLERGMFR+EH
Sbjct: 784  ADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRSEH 843

Query: 891  IRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGR 1070
            IRSYKAEV+N  S EKRRK D+ V FGKIQSK GRVDNLDDDGFP +GA+L SGDIIIGR
Sbjct: 844  IRSYKAEVENKLSLEKRRKPDECVNFGKIQSKFGRVDNLDDDGFPCVGASLQSGDIIIGR 903

Query: 1071 CAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGV 1250
            C+ESG DHS+KLKHTERGMVQKVVLS+ND GKNFAVVSLRQVRSP LGDKFSSMHGQKGV
Sbjct: 904  CSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAVVSLRQVRSPSLGDKFSSMHGQKGV 963

Query: 1251 LGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFST 1430
            LG+LE QENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+ +YATPFST
Sbjct: 964  LGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFST 1023

Query: 1431 LSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTG 1610
            LSV+ IT+QLHRAGFSRWGNERVYNGRTGEM+R LIFMGPTFYQRLIHM+EDKVKFRNTG
Sbjct: 1024 LSVDDITDQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGPTFYQRLIHMSEDKVKFRNTG 1083

Query: 1611 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNI 1790
            PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSS M+VC+KC+N 
Sbjct: 1084 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSLMNVCQKCQNA 1143

Query: 1791 ANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            ANVI+R + GG+KIRGPYCR C+S D+IV++NVPYGAKLLCQELFSMGISL+FET LC
Sbjct: 1144 ANVIERKLTGGRKIRGPYCRVCDSADDIVRVNVPYGAKLLCQELFSMGISLKFETRLC 1201


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1019 bits (2636), Expect = 0.0
 Identities = 504/661 (76%), Positives = 572/661 (86%), Gaps = 7/661 (1%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+++       +L  L++CGME+LV DT T L  KDKVL++G+WV
Sbjct: 546  ENCGLVKNLAVTGLVSTDVSAVSE-YILPKLLDCGMEELVDDTSTHLGNKDKVLLNGDWV 604

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S SFV EL        LP QVEIKRD    EVRI+ D GRILRPLLVV NL KIK
Sbjct: 605  GVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIK 664

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGK-DIKYTHCELDMSFLL 539
              K D  SF++LLDK            DC TAWG+++LF  +GK  +KYTHCELDMSFLL
Sbjct: 665  GFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDMSFLL 724

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
            G+SC ++PFANHDHARRVLYQS+KHS QAIG+S+TNPNIR+DTLSHQ++YPQ+PLFR++ 
Sbjct: 725  GLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMA 784

Query: 720  SDCLGEP---LGRNQIL---PKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFR 881
            SDCLG+P   LG+N+I    PKAEF+NGQN IVAVNVHLGYNQEDSLVMNRASL+RGMFR
Sbjct: 785  SDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFR 844

Query: 882  TEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDII 1061
            +EHIRSYK+E+DN ESS+K+RK +D V F K+QSKIGRVD+LDDDGFP++GANL SGDII
Sbjct: 845  SEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDII 904

Query: 1062 IGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQ 1241
            IG+ AESGAD+SVKLKHTERG VQKVVLS+ND+GKNFAVVSLRQVRSP LGDKFSSMHGQ
Sbjct: 905  IGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQ 964

Query: 1242 KGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATP 1421
            KGVLG+LESQENFPFT+QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG L+ ATP
Sbjct: 965  KGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILRQATP 1024

Query: 1422 FSTLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFR 1601
            FST SV+AITEQLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL HM+EDKVKFR
Sbjct: 1025 FSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFR 1084

Query: 1602 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKC 1781
            NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL+ERLFTLSDSSQ+H+C KC
Sbjct: 1085 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKC 1144

Query: 1782 KNIANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETEL 1961
            KN+ANVI R V GG+KIRGPYCR CES D+IV  +VPYGAKLLCQELFSMGI+L+FET+L
Sbjct: 1145 KNVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQL 1204

Query: 1962 C 1964
            C
Sbjct: 1205 C 1205


>gb|ESW08936.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
          Length = 1202

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 495/658 (75%), Positives = 570/658 (86%), Gaps = 4/658 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A TG+VS+++     ++L  TL+NCGME+LV DT T +  KDKV ++G+WV
Sbjct: 546  ENCGLVKNMAVTGLVSTDVSNASESIL-PTLLNCGMEELVNDTTTHMGNKDKVFLNGDWV 604

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S  FV EL        LP QVEIKRD    EVRI+ D GRILRPLLVV NL +IK
Sbjct: 605  GVCPDSSWFVAELRSERRKNKLPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLRIK 664

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFEDKGK-DIKYTHCELDMSFLL 539
              K D +SF TLL++            DC TAWG+++LF  +GK  +KYTHCELDMSFLL
Sbjct: 665  RFKSDRYSFRTLLEEGVIELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDMSFLL 724

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
            G+SC ++PFANHDHARRVLYQS+KHS QAIG+S+ NPN R+DTLSHQ++YPQRPLF+++ 
Sbjct: 725  GLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNTRIDTLSHQLHYPQRPLFQTMA 784

Query: 720  SDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEH 890
            SDCLG+P   LG+++I PKAEF+NGQN IVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH
Sbjct: 785  SDCLGKPTSPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEH 844

Query: 891  IRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGR 1070
            IRSYK+E+DN +SSEK+RK +D V FGK+QSKIGRVD+LDDDGFP++GANL SGDIIIGR
Sbjct: 845  IRSYKSEIDNKQSSEKKRKSEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGR 904

Query: 1071 CAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGV 1250
            CAESGAD+SVKLKHTERG VQKVVLS+ND+GKNFA VSLRQVRSP LGDKFSSMHGQKGV
Sbjct: 905  CAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAAVSLRQVRSPVLGDKFSSMHGQKGV 964

Query: 1251 LGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFST 1430
            LG+LE QENFPFT+QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG L++ATPFST
Sbjct: 965  LGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFST 1024

Query: 1431 LSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNTG 1610
             SV+AIT+QLHRAGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL HM+EDKVKFRNTG
Sbjct: 1025 PSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTG 1084

Query: 1611 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKNI 1790
            PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL+ERLFTLSDSSQ+H+C  CKN+
Sbjct: 1085 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSGCKNV 1144

Query: 1791 ANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            +NVI R V GG+K+RGPYCR CES D+IV  +VPYGAKLLCQELFSMGI+L+FET+LC
Sbjct: 1145 SNVIMRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1202


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 504/663 (76%), Positives = 563/663 (84%), Gaps = 9/663 (1%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+  TG+VS++ILE     +   L N GMEKL  D    L GK KV VDG+W+
Sbjct: 540  ENCGLVKNLGVTGLVSTSILEP----IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 595

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +SLSFV EL        LP+QVEIKRD   +EVRIF D GRILRPLLVVEN+ KIK
Sbjct: 596  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK 655

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLFED--KGKDIKYTHCELDMSFL 536
             L+G  ++F+ LLD             DC TAWGIK+L +D    K IK+THCELDMSFL
Sbjct: 656  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 715

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ +TNP+IR+DTLSHQ++YPQRPLFR++
Sbjct: 716  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 775

Query: 717  ISDCLGEP-LGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHI 893
            ISDCLG+P  G N ILP+ E +NGQN IVAVNVHLGYNQEDSLVMNRASLERGMFR+EHI
Sbjct: 776  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 835

Query: 894  RSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGRC 1073
            RSYKAEVDN E   KRR  DD V FGKIQSKIGRVD+LDDDGFPFIGANL  GDI+IG+ 
Sbjct: 836  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQCGDIVIGKY 895

Query: 1074 AESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVL 1253
            A+SGADHS+KLKHTERGMVQKVVLS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVL
Sbjct: 896  ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 955

Query: 1254 GYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA------CGGTLKYA 1415
            G+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA      C G  +YA
Sbjct: 956  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 1015

Query: 1416 TPFSTLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVK 1595
            TPF+T SV+AITEQLHRAGFS+WG ER+Y+GRTGEM+RSLIF+GPTFYQRLIHM+EDKVK
Sbjct: 1016 TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1075

Query: 1596 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCR 1775
            FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDS QMH+CR
Sbjct: 1076 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1135

Query: 1776 KCKNIANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFET 1955
            KCKN+ANVIQR V GG+K+RGPYCR C+S D+IVK NVPYGAKLLCQELFSMGI+L+F+T
Sbjct: 1136 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1195

Query: 1956 ELC 1964
            E C
Sbjct: 1196 EFC 1198


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1015 bits (2625), Expect = 0.0
 Identities = 499/660 (75%), Positives = 566/660 (85%), Gaps = 6/660 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+AATG+VS NI E     L+ TL + GME L  DT T L  K KV ++G+W+
Sbjct: 541  ENCGLVKNLAATGLVSINIAES----LISTLCDSGMENLANDTYTPLHEKHKVFLNGDWI 596

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVCA+SL+FV EL        LP QVEIKRD Q+ EVRIF D+GRILRPLLVVENL +IK
Sbjct: 597  GVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRIFSDSGRILRPLLVVENLNRIK 656

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF-EDKGKDIKYTHCELDMSFLL 539
              K   ++F +LLDK            DCRTAWGIK+LF ED GK + YTHCELDMSFLL
Sbjct: 657  PSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLFMEDGGKPVNYTHCELDMSFLL 716

Query: 540  GVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSVI 719
             VSCGIIPFANHDHARRVLYQ++KHS QAIG+ +TNP+IR+DTLSHQ++YPQRPLF+++ 
Sbjct: 717  SVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPDIRVDTLSHQLHYPQRPLFQTMT 776

Query: 720  SDCLGE---PLGRNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEH 890
            SDCLG+      +N  +PK E FNGQN IVAVNVHLGYNQEDS+VMNRASLERGMFR+EH
Sbjct: 777  SDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRSEH 836

Query: 891  IRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIGR 1070
            IRSYKA+VDN ES++KRRK DD   F KI SK GRVD+LDDDGFPFIGANL SGDI+IGR
Sbjct: 837  IRSYKADVDNKESTDKRRKPDDCFNFAKIPSKNGRVDSLDDDGFPFIGANLQSGDIVIGR 896

Query: 1071 CAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGV 1250
            CAESGADHS+KLKHTE+GMVQKVVLS+NDDGKNFAVVSLRQVR P LGDKFSSMHGQKGV
Sbjct: 897  CAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRQPILGDKFSSMHGQKGV 956

Query: 1251 LGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC--GGTLKYATPF 1424
            LGYLESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA   G  L++ATPF
Sbjct: 957  LGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALAKGIPLRHATPF 1016

Query: 1425 STLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRN 1604
            ST SV+AITEQLH+AGFSRWGNERVYNGRTGEM+RSLIFMGPTFYQRL+HM+EDKVKFRN
Sbjct: 1017 STPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMSEDKVKFRN 1076

Query: 1605 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCK 1784
            TGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGASANLHERLFTLSDSSQMH+C +C 
Sbjct: 1077 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASANLHERLFTLSDSSQMHICHRCH 1136

Query: 1785 NIANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            N+AN+IQR++ GG+K+RGPYCR C+S D+IV++NVPYGAKLLCQELF+MGI+L+FET +C
Sbjct: 1137 NVANIIQRSLMGGRKVRGPYCRICKSADDIVRVNVPYGAKLLCQELFTMGINLKFETRIC 1196


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1010 bits (2611), Expect = 0.0
 Identities = 501/659 (76%), Positives = 561/659 (85%), Gaps = 5/659 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A+ G+VS+ IL+      L TL  CGM+KLV D  T L GK KVL+DGEWV
Sbjct: 564  ENCGLVKNLASMGLVSTIILKP----FLETLFRCGMQKLVDDCATSLHGKQKVLLDGEWV 619

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S  FV +L        +P QVE+KRD    EVRIF D+GRILRPLLVV NLKKIK
Sbjct: 620  GVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDSGRILRPLLVVSNLKKIK 679

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF--EDKGKDIKYTHCELDMSFL 536
             LKG  + F++LLD             DCRTAWG++++   + +    KYTHCELDMSFL
Sbjct: 680  ALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFL 739

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQSEKHS QAIG+S+ NPN R+DT +HQ+YYPQRPLFR++
Sbjct: 740  LGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTM 799

Query: 717  ISDCLGEPLG---RNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 887
            ++D LG+P     +  +LP+ E+FNGQ  IVAVNVHLGYNQEDSLVMNRASLERGMFR+E
Sbjct: 800  LADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 859

Query: 888  HIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIG 1067
            H+RSYKAEVDN E+  K+ K +DSV FGK QSKIGRVD+LDDDGFPFIGANL SGDIIIG
Sbjct: 860  HVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIG 919

Query: 1068 RCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 1247
            + AESGADHSVKLKHTERGMVQKV+LSAND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKG
Sbjct: 920  KFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 979

Query: 1248 VLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFS 1427
            VLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG  KYATPFS
Sbjct: 980  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFS 1039

Query: 1428 TLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNT 1607
            TLSV+AI EQL   GF+RWGNERVYNGRTGEM+ SLIFMGPTFYQRLIHMAEDKVKFRNT
Sbjct: 1040 TLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNT 1099

Query: 1608 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKN 1787
            GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMH+C KCKN
Sbjct: 1100 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKN 1159

Query: 1788 IANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            +ANVIQR V GG K+RGP+CRFCESV++IVK+NVPYGAKLLCQELFSMGISL+F+TE+C
Sbjct: 1160 MANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLLCQELFSMGISLKFDTEIC 1217


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1008 bits (2606), Expect = 0.0
 Identities = 500/659 (75%), Positives = 560/659 (84%), Gaps = 5/659 (0%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A+ G+VS+ IL+      L TL  CGM+KLV D  T L GK KVL+DGEWV
Sbjct: 564  ENCGLVKNLASMGLVSTIILKP----FLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWV 619

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S  FV +L        +P QVE+KRD    EVRIF D GRILRPLLVV NLKKIK
Sbjct: 620  GVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIK 679

Query: 363  VLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF--EDKGKDIKYTHCELDMSFL 536
             LKG  + F++LLD             DCRTAWG++++   + +    KYTHCELDMSFL
Sbjct: 680  ALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFL 739

Query: 537  LGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPLFRSV 716
            LG+SCGIIPFANHDHARRVLYQSEKHS QAIG+S+ NPN R+DT +HQ+YYPQRPLFR++
Sbjct: 740  LGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTM 799

Query: 717  ISDCLGEPLG---RNQILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTE 887
            ++D LG+P     +  +LP+ E+FNGQ  IVAVNVHLGYNQEDSLVMNRASLERGMFR+E
Sbjct: 800  LADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 859

Query: 888  HIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGDIIIG 1067
            H+RSYKAEVDN E+  K+ K +DSV FGK QSKIGRVD+LDDDGFPFIGANL SGDIIIG
Sbjct: 860  HVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIG 919

Query: 1068 RCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 1247
            + +ESGADHSVKLKHTERGMVQKV+LSAND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKG
Sbjct: 920  KFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKG 979

Query: 1248 VLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYATPFS 1427
            VLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG  KYATPFS
Sbjct: 980  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFS 1039

Query: 1428 TLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVKFRNT 1607
            TLSV+AI EQL   GF+RWGNERVYNGRTGEM+ SLIFMGPTFYQRLIHMAEDKVKFRNT
Sbjct: 1040 TLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNT 1099

Query: 1608 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCRKCKN 1787
            GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMH+C KCKN
Sbjct: 1100 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKN 1159

Query: 1788 IANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFETELC 1964
            +ANVIQR V GG K+RGP+CRFCESV++IVK+NVPYGAKLLCQELFSMGISL+F+TE+C
Sbjct: 1160 MANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLLCQELFSMGISLKFDTEIC 1217


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 500/663 (75%), Positives = 565/663 (85%), Gaps = 9/663 (1%)
 Frame = +3

Query: 3    ENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGMEKLVKDTGTQLRGKDKVLVDGEWV 182
            ENCGLVKN+A+ G+VS+ +L+     LL TL  CGM+KLV D+ T L GK KVL+DG+WV
Sbjct: 562  ENCGLVKNLASMGLVSTTVLKP----LLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWV 617

Query: 183  GVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEVRIFGDTGRILRPLLVVENLKKIK 362
            GVC +S  FV +L        +P QVE+KRD Q  EVRIF D GRI+RPLLVV NLK IK
Sbjct: 618  GVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIK 677

Query: 363  VLK----GDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKFLF--EDKGKDIKYTHCELD 524
             LK    G  + F+TLLDK            DCRTAWG+++L   + +   + YTHCELD
Sbjct: 678  SLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELD 737

Query: 525  MSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNPNIRLDTLSHQMYYPQRPL 704
            MSFLLG+SCG+IPFANHDHARRVLYQSEKHS QAIG+S+ NPN R+DT +HQ+YYPQRPL
Sbjct: 738  MSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQRPL 797

Query: 705  FRSVISDCLGEP-LGRNQ--ILPKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGM 875
            F +++SD LG+P  GR+Q  +L + E++NGQ  IVAVNVHLGYNQEDS+VMNRASLERGM
Sbjct: 798  FGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGM 857

Query: 876  FRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNLDDDGFPFIGANLHSGD 1055
            FR+EH+RSYKAEVDN E+  K+ K +DSV FGK QSKIGRVD+LDDDGFPFIGANL SGD
Sbjct: 858  FRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGD 917

Query: 1056 IIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMH 1235
            IIIG+ AESGADHSVK+KHTERGMVQKV+LSANDDGKNFAVVSLRQVRSPCLGDKFSSMH
Sbjct: 918  IIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFSSMH 977

Query: 1236 GQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLKYA 1415
            GQKGVLGYLESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG  KYA
Sbjct: 978  GQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGEKYA 1037

Query: 1416 TPFSTLSVEAITEQLHRAGFSRWGNERVYNGRTGEMIRSLIFMGPTFYQRLIHMAEDKVK 1595
            TPFS LSV+AI +QLH  GFSRWG+ERVYNGRTGEM+ SLIFMGPTFYQRLIHMAEDKVK
Sbjct: 1038 TPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVK 1097

Query: 1596 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCR 1775
            FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMH+C 
Sbjct: 1098 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICG 1157

Query: 1776 KCKNIANVIQRAVPGGKKIRGPYCRFCESVDEIVKINVPYGAKLLCQELFSMGISLRFET 1955
            KCKN+ANVIQR+ PGG KIRGP+CRFCESV++IVK++VPYGAKLLCQELFSMGISL+F+T
Sbjct: 1158 KCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAKLLCQELFSMGISLKFDT 1216

Query: 1956 ELC 1964
            E+C
Sbjct: 1217 EIC 1219