BLASTX nr result
ID: Achyranthes22_contig00044163
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00044163
(286 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 82 3e-18
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 80 5e-15
ref|XP_004252454.1| PREDICTED: uncharacterized protein LOC101254... 70 3e-14
gb|ABG22119.1| polyprotein [Cynara cardunculus var. scolymus] 77 3e-14
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 80 5e-14
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 77 3e-13
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 77 3e-13
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 77 3e-13
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 77 3e-13
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 77 7e-13
emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group] 76 7e-13
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 79 8e-13
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 79 8e-13
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 77 9e-13
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 78 1e-12
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 78 1e-12
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 78 1e-12
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 78 1e-12
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 77 1e-12
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 75 1e-12
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 82.0 bits (201), Expect(2) = 3e-18
Identities = 42/58 (72%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Frame = +3
Query: 114 KSVYGKVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
K +VPY+SA GSLMYAMV TRPDLA +VSVVSR M PG+EHW AVK+IFRYLRG
Sbjct: 1084 KEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRG 1141
Score = 35.0 bits (79), Expect(2) = 3e-18
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITANIHXXXXXXXXXXXXPISVEEKAYMGR 132
RF MS+ KP++TP ANIH P S EEK YM R
Sbjct: 1053 RFGMSSSKPIDTPSAANIH------LTAMFAPQSEEEKEYMSR 1089
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 80.5 bits (197), Expect(2) = 5e-15
Identities = 42/58 (72%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Frame = +3
Query: 114 KSVYGKVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
K KVPYSSA GSLMYAMV TRPD+A +V VVSR + NPGKEHW AVK I RYLRG
Sbjct: 1103 KGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRG 1160
Score = 25.8 bits (55), Expect(2) = 5e-15
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITANIHXXXXXXXXXXXXPISVEEKAYMGR 132
RF+M KP++TP+ ++ P +VEEK M +
Sbjct: 1072 RFNMKNAKPVSTPLAGHL------KLSKKMCPTTVEEKGNMAK 1108
>ref|XP_004252454.1| PREDICTED: uncharacterized protein LOC101254576, partial [Solanum
lycopersicum]
Length = 538
Score = 70.5 bits (171), Expect(2) = 3e-14
Identities = 39/58 (67%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = +3
Query: 114 KSVYGKVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
K +V Y+SA GSLMYAMV TR DLA +VSVVSR M PG+E W AVK+IFRYLRG
Sbjct: 94 KEYMSRVFYASAVGSLMYAMVCTRQDLAHAVSVVSRFMGQPGRELWQAVKRIFRYLRG 151
Score = 33.1 bits (74), Expect(2) = 3e-14
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITANIHXXXXXXXXXXXXPISVEEKAYMGR 132
RF MS+ KP++TP NIH P S EEK YM R
Sbjct: 63 RFGMSSSKPVDTPSAVNIH------LTTMFAPQSEEEKEYMSR 99
>gb|ABG22119.1| polyprotein [Cynara cardunculus var. scolymus]
Length = 358
Score = 77.0 bits (188), Expect(2) = 3e-14
Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Frame = +3
Query: 114 KSVYGKVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
K +VPYSSA GSLMYAM+ TRPDLA +VS+VSR M NPG+EHW AV+ + RYL G
Sbjct: 181 KEYMSRVPYSSAVGSLMYAMICTRPDLAYAVSMVSRYMANPGREHWKAVQWVLRYLSG 238
Score = 26.6 bits (57), Expect(2) = 3e-14
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITANIHXXXXXXXXXXXXPISVEEKAYMGR 132
RF+M K +NTPI A+ P S EEK YM R
Sbjct: 150 RFNMYGAKTVNTPIAAHF------KLSACQCPDSNEEKEYMSR 186
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 79.7 bits (195), Expect(2) = 5e-14
Identities = 40/53 (75%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAMV +RPDL+ ++SVVSR M NPGKEHW AV+ IFRYLRG
Sbjct: 1320 RVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRG 1372
Score = 23.1 bits (48), Expect(2) = 5e-14
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TP+ A+
Sbjct: 1284 RFNMHDAKPVSTPLAAH 1300
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 77.0 bits (188), Expect(2) = 3e-13
Identities = 36/53 (67%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPY+SA GSLMYAM+ TRPD+A +V VVSR M +PGKEHW+AVK+I RY++G
Sbjct: 1085 RVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKG 1137
Score = 23.5 bits (49), Expect(2) = 3e-13
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TP+ N
Sbjct: 1049 RFNMQDCKPISTPLPVN 1065
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 77.0 bits (188), Expect(2) = 3e-13
Identities = 36/53 (67%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPY+SA GSLMYAM+ TRPD+A +V VVSR M +PGKEHW+AVK+I RY++G
Sbjct: 1085 RVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKG 1137
Score = 23.5 bits (49), Expect(2) = 3e-13
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TP+ N
Sbjct: 1049 RFNMQDCKPISTPLPVN 1065
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 77.0 bits (188), Expect(2) = 3e-13
Identities = 36/53 (67%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPY+SA GSLMYAM+ TRPD+A +V VVSR M +PGKEHW+AVK+I RY++G
Sbjct: 1085 RVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKG 1137
Score = 23.5 bits (49), Expect(2) = 3e-13
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TP+ N
Sbjct: 1049 RFNMQDCKPISTPLPVN 1065
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 77.0 bits (188), Expect(2) = 3e-13
Identities = 36/53 (67%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPY+SA GSLMYAM+ TRPD+A +V VVSR M +PGKEHW+AVK+I RY++G
Sbjct: 1085 RVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKG 1137
Score = 23.5 bits (49), Expect(2) = 3e-13
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TP+ N
Sbjct: 1049 RFNMQDCKPISTPLPVN 1065
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 76.6 bits (187), Expect(2) = 7e-13
Identities = 37/53 (69%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAM+ +RPDL+ ++S+VSR M NPGKEHW AV+ FRYLRG
Sbjct: 436 RVPYSSAVGSLMYAMICSRPDLSHAMSLVSRYMANPGKEHWKAVQWFFRYLRG 488
Score = 22.3 bits (46), Expect(2) = 7e-13
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 7 FDMSTVKPLNTPITAN 54
F+M KP++TPI A+
Sbjct: 401 FNMHDAKPISTPIAAH 416
>emb|CAD40782.2| OSJNBb0012E08.6 [Oryza sativa Japonica Group]
Length = 375
Score = 76.3 bits (186), Expect(2) = 7e-13
Identities = 38/53 (71%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSS GSLMYAMV +RPDL+ ++S+VSR M NPGKEHW AV+ IFRYLRG
Sbjct: 170 RVPYSSDVGSLMYAMVCSRPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRG 222
Score = 22.7 bits (47), Expect(2) = 7e-13
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TPI ++
Sbjct: 134 RFNMHDAKPVSTPIVSH 150
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 78.6 bits (192), Expect = 8e-13
Identities = 39/53 (73%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAMV +RPDL+ ++S+VSR M NPGKEHW AV+ IFRYLRG
Sbjct: 1103 RVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAVQWIFRYLRG 1155
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 78.6 bits (192), Expect = 8e-13
Identities = 39/53 (73%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAMV +RPDL+ ++S+VSR M NPGKEHW AV+ IFRYLRG
Sbjct: 786 RVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRG 838
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 77.4 bits (189), Expect(2) = 9e-13
Identities = 39/53 (73%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAMV TRPD+A +V VVSR + NPG+EHW AVK I RYLRG
Sbjct: 1106 RVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGREHWDAVKWILRYLRG 1158
Score = 21.2 bits (43), Expect(2) = 9e-13
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 4 RFDMSTVKPLNTPI 45
RF M+ KP++TP+
Sbjct: 1070 RFHMNEAKPVSTPL 1083
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/53 (73%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAMV +RPDL+ ++S+VSR M NPGKEHW AV+ IFRYLRG
Sbjct: 1114 RVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRG 1166
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/53 (73%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAMV +RPDL+ ++S+VSR M NPGKEHW AV+ IFRYLRG
Sbjct: 1114 RVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRG 1166
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/52 (75%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
Frame = +3
Query: 132 VPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
VPYSSA GSLMYAM+ +RPDL+ ++SVVSR MVNPGKEHW AV+ IFRYL G
Sbjct: 852 VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIFRYLHG 903
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/52 (75%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
Frame = +3
Query: 132 VPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
VPYSSA GSLMYAM+ +RPDL+ ++SVVSR MVNPGKEHW AV+ IFRYL G
Sbjct: 1020 VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIFRYLHG 1071
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 76.6 bits (187), Expect(2) = 1e-12
Identities = 36/53 (67%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPY+SA GSLMYAM+ TRPD+A +V VSR M +PGKEHW+AVK+I RY+RG
Sbjct: 1085 RVPYASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRG 1137
Score = 21.6 bits (44), Expect(2) = 1e-12
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M P++TP+ N
Sbjct: 1049 RFNMQDYNPISTPLPVN 1065
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 75.1 bits (183), Expect(2) = 1e-12
Identities = 37/53 (69%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 KVPYSSA*GSLMYAMVSTRPDLA-SVSVVSRSMVNPGKEHWHAVKQIFRYLRG 284
+VPYSSA GSLMYAM+ +RPDL+ ++SVVSR M NPGKEHW V+ IFRYL G
Sbjct: 962 RVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMANPGKEHWKDVQWIFRYLHG 1014
Score = 23.1 bits (48), Expect(2) = 1e-12
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 4 RFDMSTVKPLNTPITAN 54
RF+M KP++TP+ A+
Sbjct: 926 RFNMHDAKPVSTPLAAH 942