BLASTX nr result
ID: Achyranthes22_contig00041891
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00041891
(396 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 65 7e-09
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 65 1e-08
dbj|BAA22288.1| polyprotein [Oryza australiensis] 64 3e-08
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 63 5e-08
emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group] gi... 63 5e-08
gb|AAO73240.1| putative polyprotein [Oryza sativa Japonica Group... 62 8e-08
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 62 1e-07
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc... 60 2e-07
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap... 60 2e-07
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 59 9e-07
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 59 9e-07
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 57 3e-06
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 57 3e-06
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 57 3e-06
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 65.5 bits (158), Expect = 7e-09
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
RE+V+RGDVK+CKI T+ NV DPLTKP++ KHE HT IGIR
Sbjct: 1267 RELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAHTRAIGIR 1309
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 64.7 bits (156), Expect = 1e-08
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
RE+V+RGDVK+CK+ T+ N+ DPLTKP++ KHE HT IGIR
Sbjct: 851 RELVDRGDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIGIR 893
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 63.5 bits (153), Expect = 3e-08
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV+RGDVK+CK+ T+ N+ DPLTKP+ KHE HT +GIR
Sbjct: 1271 REIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIR 1313
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RGDVK+CKI T+ NV DPLTKP+ KHE HT +GIR
Sbjct: 1138 REIVGRGDVKICKIHTDLNVADPLTKPLPQPKHEAHTRAMGIR 1180
>emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group]
gi|38347202|emb|CAD40526.2| OSJNBa0023J03.14 [Oryza
sativa Japonica Group] gi|116308930|emb|CAH66059.1|
OSIGBa0125J07.8 [Oryza sativa Indica Group]
gi|116309043|emb|CAH66155.1| OSIGBa0113B06.1 [Oryza
sativa Indica Group]
Length = 704
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RGDVK+CKI T+ NV DPLTKP+ KHE HT +GIR
Sbjct: 658 REIVGRGDVKICKIHTDLNVADPLTKPLPQPKHEAHTRAMGIR 700
>gb|AAO73240.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709205|gb|ABF97000.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 146
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIRRMPHWI*C 244
REIV RGDVK+CKI T+ NV DPLTKP+ K+E T +GIR + W+ C
Sbjct: 87 REIVGRGDVKICKIHTDLNVADPLTKPLPQPKNEAQTRAMGIRFIHDWLEC 137
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 61.6 bits (148), Expect = 1e-07
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REI++RGDVK+ ++ T+ NV DP TKP+ KHE HT VIGIR
Sbjct: 723 REIIDRGDVKISRVSTDANVTDPFTKPLPQPKHESHTTVIGIR 765
>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 649
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RGDVK+CKI T+ NV DPL KP+ KHE HT +GIR
Sbjct: 603 REIVGRGDVKICKINTDLNVADPLRKPLPQPKHEAHTRAMGIR 645
>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
Length = 637
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RGDVK+CKI T+ NV DPL KP+ KHE HT +GIR
Sbjct: 591 REIVGRGDVKICKINTDLNVADPLRKPLPQPKHEAHTRAMGIR 633
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RGDVK+CKI ++ NV DPL KP+ KHE HT +GIR
Sbjct: 501 REIVGRGDVKICKIHSDLNVADPLIKPVPQPKHEAHTRAMGIR 543
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RGDVK+CKI ++ NV DPL KP+ KHE HT +GIR
Sbjct: 516 REIVGRGDVKICKIHSDLNVADPLIKPVPQPKHEAHTRAMGIR 558
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 57.8 bits (138), Expect = 1e-06
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REIV RG VK+CKI T+ NV DPLTKP+ KH+ HT +G+R
Sbjct: 1004 REIVGRGVVKICKIHTDFNVADPLTKPLPQPKHQAHTRAMGVR 1046
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 57.0 bits (136), Expect = 3e-06
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = -1
Query: 393 EIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
EIV RGDVK+CKI T+ NV D LTKP+ KHE HT +GIR
Sbjct: 1700 EIVGRGDVKICKIHTDLNVADLLTKPLPQPKHEAHTRAMGIR 1741
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 57.0 bits (136), Expect = 3e-06
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEH 289
REIV RGDVK+CKI T+ NVVDPLTKP+ KHE H
Sbjct: 895 REIVGRGDVKICKIHTDLNVVDPLTKPLPRPKHETH 930
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 56.6 bits (135), Expect = 3e-06
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = -1
Query: 396 REIVERGDVKVCKIPTEENVVDPLTKPMSLTKHEEHTDVIGIR 268
REI++RGDVK+ ++ T+ NV D TKP+ KHE HT IGIR
Sbjct: 918 REIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAIGIR 960