BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00040546
         (1061 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t...   180   5e-63
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]   168   3e-60
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]   164   9e-59
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]   164   2e-58
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...   166   3e-58
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]   165   3e-57
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]   165   3e-57
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop...   165   1e-55
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...   163   2e-54
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   161   5e-54
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...   161   5e-54
emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]   156   2e-53
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]   158   5e-53
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...   158   9e-53
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi...   159   9e-53
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...   157   3e-52
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...   157   3e-52
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...   149   3e-52
emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]   162   5e-50
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...   153   1e-48

>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1098

 Score =  180 bits (457), Expect(3) = 5e-63
 Identities = 86/138 (62%), Positives = 105/138 (76%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            R+ W FLM  KSEV +L RNF AM + QF K IK V SDNG EF+ L+SFFQ++GI+ QT
Sbjct: 591  RSVWTFLMAEKSEVSRLIRNFCAMSERQFCKSIKTVHSDNGTEFMCLKSFFQEQGIIHQT 650

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CVDT QQNGRVERKHRHIL+VA    FQ+ LP+ F GE ++T +HLIN TPT +LHGKS
Sbjct: 651  SCVDTRQQNGRVERKHRHILNVARTCLFQSHLPRKFRGESILTAIHLINRTPTKILHGKS 710

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ L+GS PSY  +R F
Sbjct: 711  PYEVLFGSRPSYSALRTF 728



 Score = 88.2 bits (217), Expect(3) = 5e-63
 Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 11/196 (5%)
 Frame = +2

Query: 440  YRPRLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF----RES 607
            YR R +DKF  +SRRC+FVGYP+GKKGWRLYDLE ++FFVSRDV F E  FP+      S
Sbjct: 736  YRARDKDKFSERSRRCVFVGYPYGKKGWRLYDLEKNKFFVSRDVVFQETVFPYGTIESSS 795

Query: 608  LPDHQRGQWENYFTQPILWDDDNGSFGQGAALLPGHAYASSPSQVAVVPDRVELVEETSV 787
            +P        + F    ++ DD+    Q    +      SSP+ +  +      V  T+ 
Sbjct: 796  IPFS-----PSMFPPSTIFHDDDWLQPQADISISPTVDLSSPTTIPTLTTTSPPVIVTTP 850

Query: 788  VGVPQVARGDMQVVSAPLSSDXXXXXXXXXXXXXXXXXXXXXXRSASDE-------LGRG 946
                 ++     +V  P S+                        S+ +        LG+G
Sbjct: 851  TSPLSLSH---PMVLTPSSNSNPGSPSSPSSPLPPSSSPSLSPLSSPEASPGLPELLGKG 907

Query: 947  HRTKFPSTKLRGFVTN 994
            HR K PS  L+ FV +
Sbjct: 908  HRQKLPSVLLKDFVAH 923



 Score = 21.9 bits (45), Expect(3) = 5e-63
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 415 FGCLCYA 435
           FGCLCYA
Sbjct: 728 FGCLCYA 734


>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
          Length = 1196

 Score =  168 bits (425), Expect(2) = 3e-60
 Identities = 79/138 (57%), Positives = 102/138 (73%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W++L++ K+EV Q+F +F AMV  QF +++KVV+SDNG EF  L  +F   GIL QT
Sbjct: 480 RAVWIYLLVDKTEVFQMFMSFIAMVDQQFSQIVKVVQSDNGTEFKCLLDYFSATGILFQT 539

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T QQNGRVERKH+HIL+V  ALRFQA LP YF GE V+   HLIN TP+P+LH K+
Sbjct: 540 SCVGTPQQNGRVERKHKHILNVGRALRFQANLPIYFWGESVLAAAHLINXTPSPLLHNKT 599

Query: 363 PYQCLYGSLPSYDDIRIF 416
           P++ L+G+ PSY  I  F
Sbjct: 600 PFEILFGTPPSYAAIHTF 617



 Score = 92.0 bits (227), Expect(2) = 3e-60
 Identities = 66/184 (35%), Positives = 87/184 (47%), Gaps = 2/184 (1%)
 Frame = +2

Query: 458  DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQRGQWE 637
            DKF S+SR+C+F+GYPFGKKGW+L DL+T E FVSRDV FFED FPF    P       +
Sbjct: 631  DKFASRSRKCVFLGYPFGKKGWKLXDLDTKELFVSRDVKFFEDVFPFGN--PGAXNIIXD 688

Query: 638  NYF-TQPILWDDDNGSFGQGAALLPG-HAYASSPSQVAVVPDRVELVEETSVVGVPQVAR 811
            N   T  +  D D   F    A LP   A   +P+ +   P   + +   S V VP +  
Sbjct: 689  NIVPTVNVEIDSDFADFVDDDADLPNPQAQTQNPNLIQPEPQAHQDLSPGSEV-VPTIGL 747

Query: 812  GDMQVVSAPLSSDXXXXXXXXXXXXXXXXXXXXXXRSASDELGRGHRTKFPSTKLRGFVT 991
              + + +                               S  +G+G R KFPS  LR FVT
Sbjct: 748  DSLGLDNT--------------------------SNGQSAPMGKGMRDKFPSVLLREFVT 781

Query: 992  NTVL 1003
            +TV+
Sbjct: 782  HTVV 785


>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
          Length = 1450

 Score =  164 bits (414), Expect(2) = 9e-59
 Identities = 77/138 (55%), Positives = 100/138 (72%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            RA W++L++ K+EV ++F +F AMV  QF + +KVV+SDNG EF  L  +F   GIL QT
Sbjct: 600  RAVWIYLLVNKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQT 659

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T QQNGRVERKH+HIL+V  AL FQA LP YF GE V+   HLIN TP+P+LH K+
Sbjct: 660  SCVGTPQQNGRVERKHKHILNVGRALHFQANLPIYFWGESVLAAAHLINRTPSPLLHNKT 719

Query: 363  PYQCLYGSLPSYDDIRIF 416
            P++ L+G+ PSY  I  F
Sbjct: 720  PFEILFGTPPSYAAIHTF 737



 Score = 91.3 bits (225), Expect(2) = 9e-59
 Identities = 67/185 (36%), Positives = 88/185 (47%), Gaps = 3/185 (1%)
 Frame = +2

Query: 458  DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQRGQWE 637
            DKF S+SR+C+F+GYPFGKKGW+L+DL+T E FVSRDV FFED FPF    P       +
Sbjct: 751  DKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPFGN--PGAVNIILD 808

Query: 638  NYF-TQPILWDDDNGSFGQGAALLPG-HAYASSPSQVAVVPD-RVELVEETSVVGVPQVA 808
            N   T  +  D D   F    A LP   A   +P+ +   P    +L+    V  VP V 
Sbjct: 809  NIVPTVNVEIDSDFADFVDDDADLPNPQAQTQNPNLIQPEPQAHQDLLPGPEV--VPTVG 866

Query: 809  RGDMQVVSAPLSSDXXXXXXXXXXXXXXXXXXXXXXRSASDELGRGHRTKFPSTKLRGFV 988
               + + +                               S  +G+G R KFPS  LR FV
Sbjct: 867  LDSLGLDNT--------------------------SNGQSAPMGKGMRDKFPSVLLRDFV 900

Query: 989  TNTVL 1003
            T+TV+
Sbjct: 901  THTVV 905


>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
          Length = 1191

 Score =  164 bits (415), Expect(2) = 2e-58
 Identities = 77/138 (55%), Positives = 101/138 (73%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W++L++ K++V ++F +F AMV  QF + +KVV+SDNG EF  L  +F   GIL QT
Sbjct: 312 RAVWIYLLVDKTDVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQT 371

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T QQNGRVERKH+HIL+V  ALRFQA LP YF GE V+   HLIN TP+P+LH K+
Sbjct: 372 SCVGTPQQNGRVERKHKHILNVGRALRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKT 431

Query: 363 PYQCLYGSLPSYDDIRIF 416
           P++ L+G+ PSY  I  F
Sbjct: 432 PFEILFGTPPSYAAIHTF 449



 Score = 89.7 bits (221), Expect(2) = 2e-58
 Identities = 66/184 (35%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
 Frame = +2

Query: 458  DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQRGQWE 637
            DKF S+SR+C+F+GYPFGKKGW+L+DL+T E FVSRDV FFED FPF    P        
Sbjct: 463  DKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPFGN--PGAVNIIPN 520

Query: 638  NYF-TQPILWDDDNGSFGQGAALLPG-HAYASSPSQVAVVPDRVELVEETSVVGVPQVAR 811
            N   T  +  D D   F    A LP   A   +P+ +   P   +            ++ 
Sbjct: 521  NIVPTVNVEIDSDFADFVDDDADLPNPQAQTQNPNLIQPEPQAHQ-----------DLSP 569

Query: 812  GDMQVVSAPLSSDXXXXXXXXXXXXXXXXXXXXXXRSASDELGRGHRTKFPSTKLRGFVT 991
            G   V +  L S                          S  +G+G R KFPS  LR FVT
Sbjct: 570  GPEVVPTVRLDS----------------LGLDNTSNGQSAPMGKGMRDKFPSVLLRDFVT 613

Query: 992  NTVL 1003
            +TV+
Sbjct: 614  HTVV 617


>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score =  166 bits (421), Expect(3) = 3e-58
 Identities = 80/138 (57%), Positives = 99/138 (71%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            R+ W +LM +K+EV QL +NF AM + QF K +K  R+DNG EF+ L  +FQ  GIL QT
Sbjct: 588  RSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTEFMCLTPYFQTHGILHQT 647

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CVDT QQNGRVERKHRHIL+VA A  FQ  LP  F GE ++T  HLIN TP+ VL GK+
Sbjct: 648  SCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKT 707

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ L+G  PSYD +R F
Sbjct: 708  PYELLFGERPSYDMLRSF 725



 Score = 85.1 bits (209), Expect(3) = 3e-58
 Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
 Frame = +2

Query: 425  CVMRAY-RPRLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFR 601
            C+  A+ RPR +DKF S+SR+C+F+GYP GKK WR+YDLET + F SRDV F ED +P+ 
Sbjct: 727  CLCYAHIRPRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYA 786

Query: 602  ES------LPDHQRGQWENYFTQPILWDDDNGSFGQGAALLPGHAYASSPSQVAVV---P 754
             +      LP        + +  PI    D+ +    +        +SSP+Q   +   P
Sbjct: 787  TATQSNVPLPPPTPPMVNDDWFLPISTQVDSTNVDSSS--------SSSPAQSGSIDQPP 838

Query: 755  DRVELVEETSVVGVPQVARGDMQVVSAPLSSDXXXXXXXXXXXXXXXXXXXXXXRSA--- 925
              ++    TS   VP+     +   S   S D                       S+   
Sbjct: 839  RSIDQSPSTSTNPVPEEIGSIVPSSSPSRSIDRSTSDLSASDTTELLSTGESSTPSSPGL 898

Query: 926  SDELGRGHRTKFPSTKLRGFVTNT 997
             + LG+G R K  S  L+ FVTNT
Sbjct: 899  PELLGKGCREKKKSVLLKDFVTNT 922



 Score = 22.7 bits (47), Expect(3) = 3e-58
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 415 FGCLCYAGI 441
           FGCLCYA I
Sbjct: 725 FGCLCYAHI 733


>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
          Length = 1178

 Score =  165 bits (418), Expect(2) = 3e-57
 Identities = 78/138 (56%), Positives = 101/138 (73%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W++L++ K+EV ++F +F AMV  QF + +KVV+SDNG EF  L  +F   GIL QT
Sbjct: 353 RAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQT 412

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T QQNGRVERKH+HIL+V  ALRFQA LP YF GE V+   HLIN TP+P+LH K+
Sbjct: 413 SCVGTPQQNGRVERKHKHILNVGRALRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKT 472

Query: 363 PYQCLYGSLPSYDDIRIF 416
           P++ L+G+ PSY  I  F
Sbjct: 473 PFEILFGTPPSYAAIHTF 490



 Score = 84.7 bits (208), Expect(2) = 3e-57
 Identities = 35/47 (74%), Positives = 42/47 (89%)
 Frame = +2

Query: 458 DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF 598
           DKF S+SR+C+F+GYPFGKKGW+L+DL+T E FVSRDV FFED FPF
Sbjct: 504 DKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPF 550


>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
          Length = 1099

 Score =  165 bits (418), Expect(2) = 3e-57
 Identities = 78/138 (56%), Positives = 101/138 (73%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W++L++ K+EV ++F +F AMV  QF + +KVV+SDNG EF  L  +F   GIL QT
Sbjct: 267 RAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQSDNGTEFKCLLDYFSATGILFQT 326

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T QQNGRVERKH+HIL+V  ALRFQA LP YF GE V+   HLIN TP+P+LH K+
Sbjct: 327 SCVGTPQQNGRVERKHKHILNVGRALRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKT 386

Query: 363 PYQCLYGSLPSYDDIRIF 416
           P++ L+G+ PSY  I  F
Sbjct: 387 PFEILFGTPPSYAAIHTF 404



 Score = 84.7 bits (208), Expect(2) = 3e-57
 Identities = 35/47 (74%), Positives = 42/47 (89%)
 Frame = +2

Query: 458 DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF 598
           DKF S+SR+C+F+GYPFGKKGW+L+DL+T E FVSRDV FFED FPF
Sbjct: 418 DKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPF 464


>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
          Length = 1152

 Score =  165 bits (418), Expect(2) = 1e-55
 Identities = 80/138 (57%), Positives = 101/138 (73%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            RA W+ LML KSEV  L + F AM   QF K +K VRS+NG EF+SL+S+F ++GI+ Q 
Sbjct: 602  RAVWIHLMLAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMSLKSYFAERGIVHQI 661

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T QQNGRVERKHRHIL+VA +L FQA+LP  F  E V+T  +LIN TPTP+L GK+
Sbjct: 662  SCVYTHQQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINRTPTPILDGKT 721

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ LY   PSY  +R+F
Sbjct: 722  PYKILYSQPPSYASLRVF 739



 Score = 79.3 bits (194), Expect(2) = 1e-55
 Identities = 41/84 (48%), Positives = 50/84 (59%)
 Frame = +2

Query: 422 VCVMRAYRPRLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFR 601
           +C  R +  RL DKF  + R+CIFVGYP G+KGWR+YD+E+  FFVSRDV F ED FPF 
Sbjct: 742 LCFARKHTGRL-DKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFVSRDVVFQEDIFPFA 800

Query: 602 ESLPDHQRGQWENYFTQPILWDDD 673
           +                PIL  DD
Sbjct: 801 DKKNKDTFSSPAAVIPSPILPYDD 824


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score =  163 bits (413), Expect(2) = 2e-54
 Identities = 77/138 (55%), Positives = 101/138 (73%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            RA W +L+L KSEV Q+  NF    + QF K +K+VRSDNG EF+ L S+F++ GI+ QT
Sbjct: 615  RAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMCLSSYFRENGIIHQT 674

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T QQNGRVERKHRHIL+VA AL FQA LP  F GE ++T  +LIN TP+ +L G++
Sbjct: 675  SCVGTPQQNGRVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRT 734

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ L+GS P Y  +R+F
Sbjct: 735  PYEVLHGSKPVYSQLRVF 752



 Score = 77.4 bits (189), Expect(2) = 2e-54
 Identities = 33/50 (66%), Positives = 41/50 (82%)
 Frame = +2

Query: 449 RLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF 598
           R +DKF  +SR CIFVGYPFGKKGW++YD+E +EF VSRDV F E+ FP+
Sbjct: 763 RDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPY 812


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  161 bits (408), Expect(2) = 5e-54
 Identities = 75/138 (54%), Positives = 101/138 (73%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            R+ W +L+L KSEV  +  NF A  + QF K +K++RSDNG EF+ L S+F+++GI+ QT
Sbjct: 598  RSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQT 657

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T QQNGRVERKHRHIL+V+ AL FQA LP  F GE V+T  +LIN TP+ + +G S
Sbjct: 658  SCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLS 717

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ L+G  P YD +R+F
Sbjct: 718  PYELLHGCKPDYDQLRVF 735



 Score = 77.8 bits (190), Expect(2) = 5e-54
 Identities = 39/75 (52%), Positives = 51/75 (68%)
 Frame = +2

Query: 449 RLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQRG 628
           R +DKF  +SR CIFVGYPFG+KGW++YDL T+EF VSRDV F E+ FP+  +  D    
Sbjct: 746 RDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEGD---T 802

Query: 629 QWENYFTQPILWDDD 673
            +    T PI +D+D
Sbjct: 803 IYTPPVTCPITYDED 817


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  161 bits (408), Expect(2) = 5e-54
 Identities = 75/138 (54%), Positives = 101/138 (73%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            R+ W +L+L KSEV  +  NF A  + QF K +K++RSDNG EF+ L S+F+++GI+ QT
Sbjct: 598  RSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQT 657

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T QQNGRVERKHRHIL+V+ AL FQA LP  F GE V+T  +LIN TP+ + +G S
Sbjct: 658  SCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLS 717

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ L+G  P YD +R+F
Sbjct: 718  PYELLHGCKPDYDQLRVF 735



 Score = 77.8 bits (190), Expect(2) = 5e-54
 Identities = 39/75 (52%), Positives = 51/75 (68%)
 Frame = +2

Query: 449 RLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQRG 628
           R +DKF  +SR CIFVGYPFG+KGW++YDL T+EF VSRDV F E+ FP+  +  D    
Sbjct: 746 RDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEGD---T 802

Query: 629 QWENYFTQPILWDDD 673
            +    T PI +D+D
Sbjct: 803 IYTPPVTCPITYDED 817


>emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]
          Length = 1109

 Score =  156 bits (394), Expect(3) = 2e-53
 Identities = 76/138 (55%), Positives = 95/138 (68%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W++L+  K+EV  + +NF  MV+ QF+K +K+VRSDNG +F+ L   F K GIL QT
Sbjct: 411 RAVWIYLLNRKNEVACVLKNFIVMVRQQFEKNVKIVRSDNGTKFMCLTKXFAKHGILHQT 470

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV   Q NG VERKHRHIL+V  ALRFQA LP  F GECV+   +LIN TP+  L GK+
Sbjct: 471 SCVGXPQXNGHVERKHRHILNVVRALRFQAHLPIEFWGECVLIARYLINXTPSVFLDGKT 530

Query: 363 PYQCLYGSLPSYDDIRIF 416
           PY+ LYG  PSY  I  F
Sbjct: 531 PYEILYGQAPSYKHIXTF 548



 Score = 80.5 bits (197), Expect(3) = 2e-53
 Identities = 35/50 (70%), Positives = 43/50 (86%)
 Frame = +2

Query: 449 RLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF 598
           R +DKF S+SR+CIFVGYPFGKKGWRLYDLE+ E+FVSR+V F E +F +
Sbjct: 559 RDKDKFASRSRKCIFVGYPFGKKGWRLYDLESGEYFVSRBVIFVEAEFSY 608



 Score = 21.9 bits (45), Expect(3) = 2e-53
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 415 FGCLCYA 435
           FGCLCYA
Sbjct: 548 FGCLCYA 554


>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
          Length = 1316

 Score =  158 bits (400), Expect(2) = 5e-53
 Identities = 74/140 (52%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFL--SLESFFQKKGILL 176
           R  W++LM  KSE   + +NF  M KTQF K +K +RSDNG EF    + SF++++GIL 
Sbjct: 475 RGVWIYLMKEKSETKDILQNFCFMTKTQFDKPVKCIRSDNGLEFCXGQMMSFYKREGILR 534

Query: 177 QTTCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHG 356
           +++ V+T Q NGRVERKH+HIL++A  LRFQA LP  F GECV+T  +LIN TPTP+L G
Sbjct: 535 ESSLVNTPQXNGRVERKHQHILNIARTLRFQACLPIDFWGECVLTAAYLINRTPTPILDG 594

Query: 357 KSPYQCLYGSLPSYDDIRIF 416
           K+PY+ L+G  P+Y+ +R+F
Sbjct: 595 KTPYEILFGEKPNYEHLRVF 614



 Score = 77.4 bits (189), Expect(2) = 5e-53
 Identities = 36/66 (54%), Positives = 45/66 (68%)
 Frame = +2

Query: 443 RPRLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQ 622
           + R  DKFD +SRRC F GYP+GKKGW+L DLET E F SRDV F E  FPF +S    +
Sbjct: 623 KSRSNDKFDXRSRRCXFXGYPYGKKGWKLXDLETKEQFESRDVIFHETIFPFCQSSKGDK 682

Query: 623 RGQWEN 640
             +++N
Sbjct: 683 EQKFQN 688


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  158 bits (400), Expect(2) = 9e-53
 Identities = 74/138 (53%), Positives = 98/138 (71%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            R  WV+LM  KSE  +  ++F A+V+ QF   IK+VRSDNG EFL +  +F  KGI  +T
Sbjct: 602  RGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLCMREYFLHKGIAHET 661

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T  QNGRVERKHRHIL++A ALRFQ+ LP  F GEC+++  +LIN TP+ +L GKS
Sbjct: 662  SCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKS 721

Query: 363  PYQCLYGSLPSYDDIRIF 416
            PY+ LY + P Y  +R+F
Sbjct: 722  PYEMLYKTAPKYSHLRVF 739



 Score = 76.6 bits (187), Expect(2) = 9e-53
 Identities = 61/190 (32%), Positives = 84/190 (44%), Gaps = 9/190 (4%)
 Frame = +2

Query: 458  DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF-RESLPDHQRGQW 634
            DKF ++SRRC+FVGYP G+KGWRL+DLE  +FFVSRDV F E +FP+ + S  +      
Sbjct: 753  DKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNEEDERVL 812

Query: 635  ENYFTQPILWDDDNGSFGQGAALLPGHAYASSPSQVAVVPDRVELVEETSVVGV------ 796
             +    P + +    + G    +      A+    VA  P   E+ +E+S          
Sbjct: 813  VDCVGPPFIEE----AIGPRTIIGRNIGEATVGPNVATGPIIPEINQESSSPSEFVSLSS 868

Query: 797  --PQVARGDMQVVSAPLSSDXXXXXXXXXXXXXXXXXXXXXXRSASDELGRGHRTKFPST 970
              P +A   +Q    PLSS                         A  +L R  R      
Sbjct: 869  LDPFLASSTVQTADLPLSS----------------------TTPAPIQLRRSSRQTQKPM 906

Query: 971  KLRGFVTNTV 1000
            KL+ FVTNTV
Sbjct: 907  KLKNFVTNTV 916


>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1156

 Score =  159 bits (401), Expect(2) = 9e-53
 Identities = 76/138 (55%), Positives = 100/138 (72%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W +L+L KSEV  +  NF    + QF K +KV+RSDNG EF+ L S+F++ GI+ QT
Sbjct: 176 RAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKSVKVLRSDNGTEFMCLASYFREHGIVHQT 235

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T QQNGRVERKHRHIL+VA A+ FQA LP  F GE V+T  +LIN TPT + +G S
Sbjct: 236 SCVGTPQQNGRVERKHRHILNVARAILFQASLPIQFWGEAVLTAAYLINRTPTSLHNGLS 295

Query: 363 PYQCLYGSLPSYDDIRIF 416
           PY+ L+ S P+Y+ +R+F
Sbjct: 296 PYEILHNSKPNYEHLRVF 313



 Score = 76.3 bits (186), Expect(2) = 9e-53
 Identities = 35/75 (46%), Positives = 48/75 (64%)
 Frame = +2

Query: 449 RLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQRG 628
           R +DKF  +SR C+F+GYPF +KGW+++D+E  EF VSRDV F ED FP+  +  DH   
Sbjct: 324 RDKDKFGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFREDVFPYAATNTDHVSA 383

Query: 629 QWENYFTQPILWDDD 673
                   P+L D+D
Sbjct: 384 S-----PAPLLVDED 393


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score =  157 bits (398), Expect(2) = 3e-52
 Identities = 74/138 (53%), Positives = 98/138 (71%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           R  WV+LM  KSE  +  ++F A+V+ QF   IK VRSDNG EFL +  +F  KGI  +T
Sbjct: 378 RGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGITHET 437

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T  QNGRVERKHRHIL++A ALRFQ+ LP  F GEC+++  +LIN TP+ +L GKS
Sbjct: 438 SCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKS 497

Query: 363 PYQCLYGSLPSYDDIRIF 416
           PY+ LY + P+Y  +R+F
Sbjct: 498 PYEMLYKTAPNYSHLRVF 515



 Score = 75.9 bits (185), Expect(2) = 3e-52
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 458 DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF 598
           DKF ++SRRC+FVGYP G+KGWRL+DLE  +FFVSRDV F E +FP+
Sbjct: 529 DKFVARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPY 575


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
           gi|7269049|emb|CAB79159.1| LTR retrotransposon like
           protein [Arabidopsis thaliana]
          Length = 1109

 Score =  157 bits (397), Expect(2) = 3e-52
 Identities = 74/138 (53%), Positives = 97/138 (70%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           R  WV+LM  KSE  +  ++F A+V+ QF   IK VRSDNG EFL +  +F  KGI  +T
Sbjct: 378 RGVWVYLMTDKSETQKHLKDFMALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGIAHET 437

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T  QNGRVERKHRHIL++A ALRFQ+ LP  F GEC+++  +LIN TP+ +L GKS
Sbjct: 438 SCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKS 497

Query: 363 PYQCLYGSLPSYDDIRIF 416
           PY+ LY + P Y  +R+F
Sbjct: 498 PYEMLYKTAPKYSHLRVF 515



 Score = 76.3 bits (186), Expect(2) = 3e-52
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 458 DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPF 598
           DKF ++SRRC+FVGYP G+KGWRL+DLE  +FFVSRDV F E +FP+
Sbjct: 529 DKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFVSRDVIFQETEFPY 575


>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  149 bits (377), Expect(2) = 3e-52
 Identities = 71/138 (51%), Positives = 96/138 (69%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           R  W++L+  KSE     +NF+AM   QF   IK VRSDNG EFL L  FFQ++G++ + 
Sbjct: 478 RGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHER 537

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T ++N RVERKHRH+L+VA ALRFQA LP  F GECV+T  +LIN TP+ VL+  +
Sbjct: 538 SCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDST 597

Query: 363 PYQCLYGSLPSYDDIRIF 416
           PY+ L+   P +D +R+F
Sbjct: 598 PYERLHKKQPRFDHLRVF 615



 Score = 83.6 bits (205), Expect(2) = 3e-52
 Identities = 56/138 (40%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
 Frame = +2

Query: 443  RPRLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFRESLPDHQ 622
            R R  DKF  +SRRC+FVGYP G+KGWRL+DLE +EFFVSRDV F E +FPFR S   + 
Sbjct: 624  RNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRISHEQNV 683

Query: 623  RGQWENYFTQPIL--WDDDNGSFGQGAALLPGHAYASSPSQVAVVPDRVELVE----ETS 784
              + E     PI+    ++    GQ A   P     SSP   +    R E       +T 
Sbjct: 684  IEEEEEALWAPIVDGLIEEEVHLGQNAGPTP-PICVSSPISPSATSSRSEHSTSSPLDTE 742

Query: 785  VVGVPQVARGDMQVVSAP 838
            VV  P  +       S+P
Sbjct: 743  VVPTPATSTTSASSPSSP 760


>emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]
          Length = 1535

 Score =  162 bits (410), Expect(2) = 5e-50
 Identities = 78/138 (56%), Positives = 99/138 (71%)
 Frame = +3

Query: 3    RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
            R TW+FLM  K E   L ++F++ V TQF   IK+ RSDNG EFLSL+SFF+  G+L Q 
Sbjct: 633  RFTWIFLMKHKDEAQPLIKHFFSYVSTQFASHIKIFRSDNGGEFLSLQSFFKDNGVLFQH 692

Query: 183  TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
            +CV T QQNG VERKHRHIL VA AL+FQA+LP  F GEC +T VH+IN  P+PVL  K+
Sbjct: 693  SCVYTPQQNGVVERKHRHILQVARALKFQAQLPTQFWGECALTAVHIINRLPSPVLSFKT 752

Query: 363  PYQCLYGSLPSYDDIRIF 416
            P++ LY   P+Y  +R+F
Sbjct: 753  PFERLYLKPPTYSHLRVF 770



 Score = 63.5 bits (153), Expect(2) = 5e-50
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +2

Query: 404  YPHFLVV-CVMRAYRPRLRDKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFF 580
            Y H  V  C+  A    +  KFD ++  CIF+GYP G+K ++L++L T + F SRDV F 
Sbjct: 764  YSHLRVFGCLAYATNVHVSHKFDHRAIACIFIGYPVGQKAYKLFNLSTRKIFTSRDVRFH 823

Query: 581  EDQFP---FRESLPDHQRGQWENYFTQPI 658
            E++FP   F   LP    G        PI
Sbjct: 824  ENRFPYASFESVLPTSNLGYSSGPIPVPI 852


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score =  153 bits (387), Expect(2) = 1e-48
 Identities = 73/138 (52%), Positives = 96/138 (69%)
 Frame = +3

Query: 3   RATWVFLMLTKSEVGQLFRNFYAMVKTQFQKMIKVVRSDNGQEFLSLESFFQKKGILLQT 182
           RA W++L+ +K       +NF ++V+ QF   IK +RSDNG EF+ L SFF   GI+ +T
Sbjct: 556 RAVWLYLLPSKQTAPMHLKNFISLVERQFSTKIKTIRSDNGTEFVCLSSFFVDHGIIHET 615

Query: 183 TCVDTAQQNGRVERKHRHILHVAHALRFQAKLPKYFLGECVVTVVHLINLTPTPVLHGKS 362
           +CV T QQNGRVERKHRHIL+VA ALRFQA+LP  F   C +T  +LIN TPTP+L GK+
Sbjct: 616 SCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFWSYCALTAAYLINRTPTPLLQGKT 675

Query: 363 PYQCLYGSLPSYDDIRIF 416
           P++ LY   P  + IR+F
Sbjct: 676 PFELLYNRPPPVNHIRVF 693



 Score = 68.2 bits (165), Expect(2) = 1e-48
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
 Frame = +2

Query: 458 DKFDSKSRRCIFVGYPFGKKGWRLYDLETHEFFVSRDVHFFEDQFPFR----ESLPDHQ 622
           DKF+S+S + IF+GYPF KKGWR+Y+ ET    VSRDV F E +FPF     +S PD Q
Sbjct: 707 DKFESRSNKSIFLGYPFAKKGWRVYNFETGVISVSRDVVFRETEFPFPASVFDSTPDSQ 765