BLASTX nr result
ID: Achyranthes22_contig00039828
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00039828
(1864 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY10285.1| Uncharacterized protein TCM_025656 [Theobroma cacao] 129 2e-35
gb|EOX96724.1| Gag-pol polyprotein, putative [Theobroma cacao] 121 5e-33
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 124 2e-32
gb|EOY18660.1| Uncharacterized protein TCM_043155 [Theobroma cacao] 122 2e-31
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 113 4e-29
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 114 6e-29
gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum] 114 1e-28
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 108 5e-27
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 112 2e-25
ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803... 97 1e-24
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 120 2e-24
ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778... 105 4e-24
ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624... 99 2e-23
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni... 97 5e-22
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 90 1e-19
ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659... 90 2e-19
ref|XP_006607002.1| PREDICTED: uncharacterized protein LOC100788... 89 3e-19
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 85 4e-19
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 86 9e-19
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 80 3e-17
>gb|EOY10285.1| Uncharacterized protein TCM_025656 [Theobroma cacao]
Length = 505
Score = 129 bits (325), Expect(3) = 2e-35
Identities = 87/302 (28%), Positives = 148/302 (49%), Gaps = 21/302 (6%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
+++ ++RKF+P +Y+Q +++ +++L Q M + +Y EFE+L + CD+ + EE R L
Sbjct: 1 MRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHMKCDVHEPEEQTVARYL 60
Query: 1485 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYS------- 1327
G GLN +I + ++ P D LA EKQR + + +
Sbjct: 61 G---GLNVEIADVVQLQPYWNLNDVIRLALKVEKQRSRKRSMSSSRQQESISNDESQSSV 117
Query: 1326 -----------TT*A*QREEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEK-- 1186
T + +E + + + CFKC+G GH A DCPN R +S +E+
Sbjct: 118 TIPPPKVNSSKTASSNDKETTFTRASNVNKK--CFKCQGFGHIAFDCPNRRIISLVEEED 175
Query: 1185 -INTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN* 1009
N KL + + E++ +V++ +N + M K+E+
Sbjct: 176 YANWEKLEPVYDEYDDEEIEEVSADHGEALIVRRNLNTAM-------------MTKDESW 222
Query: 1008 QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQT 829
R NIF ++C Q +VCN+I+D GS NV+ +V++L L+TE HP PYKL W+ + +
Sbjct: 223 LRHNIFYTRCTSQGKVCNVIIDSGSCENVIANYMVEKLKLQTEVHPHPYKLQWLRKGNEV 282
Query: 828 QV 823
+V
Sbjct: 283 KV 284
Score = 40.8 bits (94), Expect(3) = 2e-35
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
Frame = -1
Query: 817 QCLVQFQIGS-YQDEIMCDV-QMDVCHMLLG 731
+C VQF IG+ Y+DE+ CD+ MD CH+LLG
Sbjct: 287 RCCVQFSIGNKYEDEVWCDIIPMDACHLLLG 317
Score = 28.1 bits (61), Expect(3) = 2e-35
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQ+DR++ HDG K +
Sbjct: 316 LGRPWQYDRRAHHDGYKNTY 335
>gb|EOX96724.1| Gag-pol polyprotein, putative [Theobroma cacao]
Length = 794
Score = 121 bits (303), Expect(3) = 5e-33
Identities = 84/301 (27%), Positives = 146/301 (48%), Gaps = 19/301 (6%)
Frame = -2
Query: 1668 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 1489
++++ ++RKF+P +Y+Q +++ +++L Q M + +Y EFE+L + CD+ + EE R
Sbjct: 151 KMRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHMKCDVHEPEEQTVARY 210
Query: 1488 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSF-----QGLYST 1324
LG GLN I + ++ P D LA EKQ+ +G S+
Sbjct: 211 LG---GLNVGIADVVQLQPYWNLNDVIRLALKVEKQQLRKSSMSSSRQKDSTSNRGRQSS 267
Query: 1323 T*A*QREEGY*SLV*MKSEVV---------CFKCRGRGHYARDCPNPRELSAMEKINTYK 1171
+ + K CFKC+G GH A DCPN R +S +E+ +
Sbjct: 268 ATIPPPKVNSSKTINHKETTSTRAPNVNKKCFKCQGFGHIASDCPNRRIISLIEEEVMEE 327
Query: 1170 LLILQLN*YGNIMS-----ELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*Q 1006
+ +++ I + E++ VV++ +N + + ++E+
Sbjct: 328 PSLEEVDDELEIFNNEEIEEVSADHGEALVVRRNLNTAM-------------LTEDESWL 374
Query: 1005 RTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQ 826
R NIF ++C Q +VCN+I+D GS NV+ +V +L L+TE HP PYKL W+ + + +
Sbjct: 375 RHNIFHTRCTSQGKVCNVIIDSGSCENVIANYMVKKLKLQTEVHPHPYKLQWLRKGNEVK 434
Query: 825 V 823
V
Sbjct: 435 V 435
Score = 41.2 bits (95), Expect(3) = 5e-33
Identities = 19/31 (61%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
Frame = -1
Query: 817 QCLVQFQIGS-YQDEIMCDV-QMDVCHMLLG 731
+C VQF IG+ Y+DE+ CDV MD CH+LLG
Sbjct: 438 RCCVQFSIGNKYEDEVWCDVIPMDACHLLLG 468
Score = 28.1 bits (61), Expect(3) = 5e-33
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQ+DR++ HDG K +
Sbjct: 467 LGRPWQYDRRAHHDGYKNTY 486
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 124 bits (311), Expect(2) = 2e-32
Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 25/307 (8%)
Frame = -2
Query: 1668 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 1489
+LKK M KFV +Y Q L++ ++L Q + + Y++EFE+L + C+I + E +RI
Sbjct: 163 KLKKKMLAKFVTKDYTQDLFIKLSNLKQKEKTVEAYLREFEQLTLQCEINEKSE---QRI 219
Query: 1488 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYS------ 1327
F+ GL+ +I ++ P +Y D L+ EK YS
Sbjct: 220 ARFLEGLDKNIAAEVRMQPLWSYDDVVNLSLRVEKMGKTKPVATRPKPVFRPYSSVKIND 279
Query: 1326 ---TT*A*QREEGY*SL------V*MKSEVVCFKCRGRGHYARDCPNPRELSAME----- 1189
TT ++G + + ++ CF+C+G GH+ +DCP+ R L+A+E
Sbjct: 280 PPKTTPQSTVDKGKAPMNPKINPPLSRDKIKCFQCQGFGHFRKDCPSARTLTAIEVAEWE 339
Query: 1188 -----KINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMA 1024
+ + L+L+ + SE +P Q+V S W ++ + A
Sbjct: 340 REGLVEYEEDEALVLE-----EVESEKETSP--DQIVAHPDTGHSLFLW---RVMHSQQA 389
Query: 1023 KEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWID 844
E QR+ IF+S+C +Q VCNLI++GGS NV T +V +L L T+ HP PYKL W+
Sbjct: 390 PLEADQRSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLS 449
Query: 843 EEKQTQV 823
++ +V
Sbjct: 450 KDSGVRV 456
Score = 43.9 bits (102), Expect(2) = 2e-32
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = -1
Query: 817 QCLVQFQIGS-YQDEIMCDV--QMDVCHMLLGVHGNLIGNPSMMGRNKNFKDHVQGVYSN 647
QC++ F IG Y+DE++CDV MD CH+LLG N + G++ + QG
Sbjct: 459 QCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPWEYDRNTTHQGKDNVYIFKHQGKKVT 518
Query: 646 CEGIGYSSLNFGSNN--KHMLGLSYKS 572
+ + ++GS N + M G+ + S
Sbjct: 519 LTPLPPNQRDYGSPNVPEEMSGVLFLS 545
>gb|EOY18660.1| Uncharacterized protein TCM_043155 [Theobroma cacao]
Length = 625
Score = 122 bits (307), Expect(3) = 2e-31
Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 21/303 (6%)
Frame = -2
Query: 1668 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 1489
++++ ++RKF+P +Y+Q +++ +++L Q M + +Y EFE+L + CD+ + EE R
Sbjct: 120 KMRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHMKCDVHEPEEQTLARY 179
Query: 1488 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYS------ 1327
LG GLN +I + ++ P D L EKQ+ + + +
Sbjct: 180 LG---GLNVEIADVVQLQPYWNLNDVIRLTLKVEKQQSRKRSMSSSRQQESISNDESQSS 236
Query: 1326 ------------TT*A*QREEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEK- 1186
T + +E + + + CFKC+ GH A DCP+ R +S +E+
Sbjct: 237 VTIPPPKVNSSKTASSNDKETTFTRASNVNKK--CFKCQRFGHIASDCPSRRIISLVEEE 294
Query: 1185 --INTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN 1012
+N KL + + E++ +V++ +N + M K+E+
Sbjct: 295 DYVNWEKLEPVYDEYDDEEIEEVSADHGEAFIVRRNLNTAL-------------MTKDES 341
Query: 1011 *QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQ 832
R NIF ++C Q VCN+I+D GS NVV +V++L L TE HP PYKL W+ + +
Sbjct: 342 CLRHNIFYTRCTSQGNVCNVIIDSGSCENVVANYMVEKLKLPTEVHPHPYKLQWLRKGNE 401
Query: 831 TQV 823
+V
Sbjct: 402 VKV 404
Score = 37.0 bits (84), Expect(3) = 2e-31
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -1
Query: 817 QCLVQFQI-GSYQDEIMCDV-QMDVCHMLLG 731
+C +QF I Y+DE+ CDV MD CH+LLG
Sbjct: 407 RCCIQFFIRNKYEDEVWCDVIPMDACHLLLG 437
Score = 25.8 bits (55), Expect(3) = 2e-31
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQ+DR++ +DG K +
Sbjct: 436 LGRPWQYDRRAHYDGYKNTY 455
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 113 bits (282), Expect(3) = 4e-29
Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 15/307 (4%)
Frame = -2
Query: 1698 REKILSLLSPRLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIK 1519
+E I S L +LKK + KF+P Y Q +++ L Q + L Y+++FE+L + C++
Sbjct: 153 KEPIKSWL--KLKKKLNEKFIPKEYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQCELN 210
Query: 1518 DHEEMKTRRILGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQ 1339
+ E K R F+ GL+ I ++ ++ + LA EK +
Sbjct: 211 EKPEQKIAR---FVEGLDTKIAHRVRMQQVWSFDEAVNLALRVEKMGKGKATTTKPTTKP 267
Query: 1338 GLY---------------STT*A*QREEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPRE 1204
+ TT + + S C++C+G GH+A++CP R
Sbjct: 268 ATFRPPTSFKINEPPSQNKTTILDKGKAAETSQKKTMPLKKCYQCQGYGHFAKECPTKRA 327
Query: 1203 LSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMA 1024
LS+ E ++ IL + E+ T + V S W ++ +
Sbjct: 328 LSSFEVVHWGDDEILVCD------EEVEGTDHEEDDVVMPDAGLSLVTW---RVMHTQPQ 378
Query: 1023 KEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWID 844
E QR IF+S+C I+ VCNLI+DGGS NV + L+++L L T+ HP PYKL W++
Sbjct: 379 PLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLN 438
Query: 843 EEKQTQV 823
+ + +V
Sbjct: 439 KGAEVRV 445
Score = 41.2 bits (95), Expect(3) = 4e-29
Identities = 20/31 (64%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Frame = -1
Query: 817 QCLVQFQIG-SYQDEIMCDV-QMDVCHMLLG 731
QCLV F IG +Y DE +CDV MD CH+LLG
Sbjct: 448 QCLVTFSIGKNYSDEALCDVLPMDACHLLLG 478
Score = 23.1 bits (48), Expect(3) = 4e-29
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDG 693
+G W+FDR S H G
Sbjct: 477 LGRPWEFDRDSVHHG 491
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 114 bits (286), Expect(3) = 6e-29
Identities = 90/298 (30%), Positives = 138/298 (46%), Gaps = 17/298 (5%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
+K+ MRR+FVPS Y + L+ L Q + +Y KE E L I ++++ +E R
Sbjct: 146 MKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMAR-- 203
Query: 1485 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQ-RXXXXXXXXXXSF----------- 1342
F+ GLN DI + +E H V + A E+Q + +F
Sbjct: 204 -FLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRNSTTFNSQSWKDKTKK 262
Query: 1341 QGLYSTT*A*QREEGY*-----SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEKINT 1177
+G S+ A +G S V V CFKC+G+GH A CP R + E
Sbjct: 263 EGASSSKEATVENKGKTITSSSSSVSTNKSVKCFKCQGQGHIASQCPTKRTMLMEEN--- 319
Query: 1176 YKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTN 997
+++ + Y E P+ V + +L ++ +E+ QR N
Sbjct: 320 EEIVEEEDGDYDKEFGEEIPSGDLLMVRR---------------MLGSQIKEEDTSQREN 364
Query: 996 IFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 823
+F +C +Q +VC+LI+DGGS NV T LV RL L+T+ HP+PYKL W++E + V
Sbjct: 365 LFHIRCFVQGKVCSLIIDGGSCTNVASTRLVSRLKLETKPHPKPYKLQWLNESVEMLV 422
Score = 32.3 bits (72), Expect(3) = 6e-29
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 817 QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
Q + F+IG Y+D ++CD V M+ H+LLG
Sbjct: 425 QVEICFKIGKYEDVVLCDVVPMEASHLLLG 454
Score = 29.6 bits (65), Expect(3) = 6e-29
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQFDRK+ HDG ++
Sbjct: 453 LGRPWQFDRKANHDGYSNKY 472
>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 572
Score = 114 bits (284), Expect(3) = 1e-28
Identities = 89/298 (29%), Positives = 138/298 (46%), Gaps = 17/298 (5%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
+K+ MRR+FVPS Y + L+ L Q + +Y KE E L I ++++ +E R
Sbjct: 146 MKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMAR-- 203
Query: 1485 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQ-RXXXXXXXXXXSF----------- 1342
F+ GLN DI + +E H V + A E+Q + +F
Sbjct: 204 -FLHGLNHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQARRNSTTFNSQSWKDKTKK 262
Query: 1341 QGLYSTT*A*QREEGY*-----SLV*MKSEVVCFKCRGRGHYARDCPNPRELSAMEKINT 1177
+G S+ A +G S V V CFKC+G+GH A CP R + E
Sbjct: 263 EGASSSKEATVENKGKTITSSSSSVSTNKSVKCFKCQGQGHIASQCPTKRTMLMEENEG- 321
Query: 1176 YKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTN 997
++ + Y E P+ V + +L ++ +E+ QR N
Sbjct: 322 --IVEEEDGDYDEEFEEEIPSGDLLMVRR---------------MLGSQIKEEDTGQREN 364
Query: 996 IFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 823
+F ++C +Q +VC+LI+DGGS NV T LV +L L+T+ HP+PYKL W++E + V
Sbjct: 365 LFHTRCFVQGKVCSLIIDGGSCTNVASTRLVSKLKLETKPHPKPYKLQWLNESVEMLV 422
Score = 32.3 bits (72), Expect(3) = 1e-28
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 817 QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
Q + F+IG Y+D ++CD V M+ H+LLG
Sbjct: 425 QVEICFKIGKYEDVVLCDVVPMEASHLLLG 454
Score = 29.6 bits (65), Expect(3) = 1e-28
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQFDRK+ HDG ++
Sbjct: 453 LGRPWQFDRKANHDGYSNKY 472
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 108 bits (270), Expect(3) = 5e-27
Identities = 91/319 (28%), Positives = 141/319 (44%), Gaps = 34/319 (10%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
LK+ MRRKFVPSN+ + + L Q + ++ KE E+L +I++ +E RIL
Sbjct: 159 LKREMRRKFVPSNFYRDMRRKLQELKQGSKSVREFYKEMERLKARANIQEDDETTIARIL 218
Query: 1485 GFICGLNDDIKE------------------KLETHPNVTYGDGC*LAAIYEKQRXXXXXX 1360
G N DI+ K+E G L++ +++ R
Sbjct: 219 E---GFNRDIRRELRNQEFDDVDKLVRVASKVEDELRSERGSKPSLSSQWDQPRRATNNS 275
Query: 1359 XXXXSFQGLYSTT*A*QRE------------EGY*SLV*MKSEVVCFKCRGRGHYARDCP 1216
+ Q YS Q E EG V S V C++C+GRGHYAR+CP
Sbjct: 276 YQSRT-QKEYSRPSHTQEEKKNNQREKEKFQEGSKQKV---STVTCYRCQGRGHYARECP 331
Query: 1215 NPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*G---- 1048
N +++ K + + + EL P RQ+ E V
Sbjct: 332 NTKKILTTGKDEREYMSANESD-----DEELEPIGERQKDDHSEEEVQEDDALHFNCVVH 386
Query: 1047 NLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQ 868
LS + ++ QR NIF KC I C+ I+DGGS NV+ ++V+ + + T +HPQ
Sbjct: 387 KALSTLVVLDQEEQRENIFYGKCKIPGATCSFIIDGGSCTNVISEDVVNAMKIPTIQHPQ 446
Query: 867 PYKLNWIDEEKQTQVYDNA 811
PYKL W++++ + +V+ A
Sbjct: 447 PYKLQWLNDDGELKVHKQA 465
Score = 38.9 bits (89), Expect(3) = 5e-27
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 817 QCLVQFQIGSYQDEIMCDV-QMDVCHMLLG 731
Q L+ IG YQD+++CDV M CH+LLG
Sbjct: 464 QALISISIGKYQDDVLCDVIPMHACHILLG 493
Score = 22.7 bits (47), Expect(3) = 5e-27
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQ+DR + H G ++
Sbjct: 492 LGRPWQYDRDTLHHGKTNKY 511
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 112 bits (281), Expect(2) = 2e-25
Identities = 88/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)
Frame = -2
Query: 1668 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 1489
+LK M+R+FVPS+Y + L+ +L Q + +Y KE E L++ D+++ E R
Sbjct: 131 QLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSRF 190
Query: 1488 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYSTT*A*Q 1309
+G GLN DI ++ E + A ++EKQ S + Y
Sbjct: 191 MG---GLNRDILDRFEVIHYENLEELFHKAVMFEKQIKRRSAKPSYNSSKPSYQREEKSG 247
Query: 1308 REEGY*SLV*MKSEVV----------------CFKCRGRGHYARDCPNPRELSAMEKINT 1177
++ Y V K E + CFKC G GHYA +C N R
Sbjct: 248 FQKEYKPFVKPKVEEISSKGKEKEVTRTRDLKCFKCHGLGHYASECSNKR---------- 297
Query: 1176 YKLLILQLN*YGNIMSELAPTPIR--QQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QR 1003
I+ + G + SE ++ K E+ V+ + +LS EE QR
Sbjct: 298 ----IMIIRDSGEVESEDEKPEESDVEEAPKGELLVTMR-------VLSVLNKAEEQAQR 346
Query: 1002 TNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 823
N+F ++C I+ +VC+LI+DGGS NV +V +L L+ HP+PYKL W++E + V
Sbjct: 347 ENLFHTRCLIKGKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAV 406
Score = 32.0 bits (71), Expect(2) = 2e-25
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 817 QCLVQFQIGSYQDEIMCDV-QMDVCHMLLG 731
Q V IG Y+DEI+CD+ ++ H+LLG
Sbjct: 409 QVQVPLAIGKYEDEILCDILPLEASHVLLG 438
>ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803456 [Glycine max]
Length = 732
Score = 97.4 bits (241), Expect(3) = 1e-24
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = -2
Query: 1269 EVVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPT-PIRQQVV 1093
++ CFKC GRGH A +CP T K++IL+ + G I SE +P+ P ++
Sbjct: 169 DIKCFKCLGRGHIASECP------------TKKVMILKDD--GEITSENSPSEPSSEEER 214
Query: 1092 KKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCT 913
E + + +L K E QR NIF + C IQ VC+LI+DGGS NVV
Sbjct: 215 ALEEEIPEGDLFIVRRILGGIAKKSEESQRENIFHTTCLIQGRVCSLIIDGGSCTNVVSA 274
Query: 912 ELVDRLCLKTERHPQPYKLNWIDEEKQTQV 823
LV ++ L+T+ HP+PYKL W+ EE + +V
Sbjct: 275 RLVKKMNLETKPHPRPYKLQWLSEEGELRV 304
Score = 33.9 bits (76), Expect(3) = 1e-24
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 817 QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
Q +QF IG Y+D+ +CD V M+ H+LLG
Sbjct: 307 QVEIQFSIGKYKDKTLCDVVPMEASHVLLG 336
Score = 31.2 bits (69), Expect(3) = 1e-24
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQFDRK+ HDG K ++
Sbjct: 335 LGRPWQFDRKAHHDGHKNKY 354
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 120 bits (301), Expect = 2e-24
Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 17/299 (5%)
Frame = -2
Query: 1668 RLKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRI 1489
++K MR++FVPS+Y + L+ +L Q + +Y KE E L++ DI++ E R
Sbjct: 510 QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569
Query: 1488 LGFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYSTT*A*Q 1309
+G GLN DI ++LE V + A ++EKQ S + Y
Sbjct: 570 MG---GLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSG 626
Query: 1308 REEGY*SLV*MKSE-----------------VVCFKCRGRGHYARDCPNPRELSAMEKIN 1180
++ Y + K E + FKC+G GHYA +C N R + ++
Sbjct: 627 FQKDYKPFIKPKVEDQDQKGKGKAVMTRTRDIKGFKCQGHGHYASECSNKR-IMIIKDTG 685
Query: 1179 TYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRT 1000
+ QL + AP+ V K ++V +K +E QR
Sbjct: 686 EIESEDEQLEESSSTEDYEAPSKGELLVTMKALSVIAK--------------TDEQEQRE 731
Query: 999 NIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQV 823
N+F S C + D+VC+LI+DGGS NV +V++L LK +HP+PYKL W++E+ + V
Sbjct: 732 NLFHSSCMVNDKVCSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSV 790
>ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778333, partial [Glycine
max]
Length = 560
Score = 105 bits (262), Expect(3) = 4e-24
Identities = 81/309 (26%), Positives = 141/309 (45%), Gaps = 28/309 (9%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
+K+ MR+++VP++Y +++ L Q + + +Y KE E ++ +I++ E R
Sbjct: 154 MKRVMRKRYVPTSYNRTMRQKLQELSQGNLTVEEYYKEMEMALVRANIEEDSEDTMAR-- 211
Query: 1485 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYSTT*A*QR 1306
F+ GLN I++ +E V D A E+Q + Y+ A +
Sbjct: 212 -FLNGLNPAIRDVVELQEYVVLDDLLHRALRVEQQ--IKRKSATRRNSPNTYNQNWANRS 268
Query: 1305 EEGY*SLV*MKSE----------------------------VVCFKCRGRGHYARDCPNP 1210
+EG S + + CFKC GRGH A +CP
Sbjct: 269 KEGGNSFRPAATSPHGKSATPSVGGSKHNTSTSSSNTGTRNIKCFKCLGRGHIASECP-- 326
Query: 1209 RELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKKEINVSSK*PWF*GNLLS*K 1030
T + +I++++ SE++ + ++ ++E LL +
Sbjct: 327 ----------TRRTMIMKVDGEITSESEISEEEVEEEEYEEEAMQGDM--LMVRRLLGNQ 374
Query: 1029 MAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNW 850
M ++ QR NIF ++C I ++C+LIVDGGS NV + LV +L L+T+ HP PYKL W
Sbjct: 375 MQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTLVTKLNLETKPHPTPYKLQW 434
Query: 849 IDEEKQTQV 823
+ E+++ +V
Sbjct: 435 LSEDEEVKV 443
Score = 30.4 bits (67), Expect(3) = 4e-24
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 850 DRRRKTNSSI*QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
D K + CL IG Y D+++CD V M+ H+LLG
Sbjct: 438 DEEVKVTQQVEVCLT---IGRYNDKVLCDVVPMEATHVLLG 475
Score = 24.6 bits (52), Expect(3) = 4e-24
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDG 693
+G WQ+D K+ HDG
Sbjct: 474 LGRPWQYDTKAVHDG 488
>ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
Length = 1083
Score = 98.6 bits (244), Expect(3) = 2e-23
Identities = 84/307 (27%), Positives = 134/307 (43%), Gaps = 26/307 (8%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
+K MRR+FVPS+Y + L+ SL Q + DY KE E ++I +I++ E R
Sbjct: 1 MKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMAR-- 58
Query: 1485 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYSTT*A*Q- 1309
F+ GLN DI + V D +A E+Q + + +
Sbjct: 59 -FLHGLNQDIANVVYLQHYVELKDMVHMAMKVERQLKKKGSTRTNLGSSSSWKSKWSKDE 117
Query: 1308 --------------REEGY*SLV*MKSE------VVCFKCRGRGHYARDCPNPRELSAME 1189
+E G S S+ + CFKC G H A CPN R + +
Sbjct: 118 KVVSKPKIEPIKDHKEGGNQSKGKSDSQHSRNRDIKCFKCLGTCHIASQCPNKRAMILRD 177
Query: 1188 KINTYKLLILQLN*YGNIMSELAPT-----PIRQQVVKKEINVSSK*PWF*GNLLS*KMA 1024
G++ +E P+ E ++ K L+ ++
Sbjct: 178 D--------------GDVETESESDDDPMPPLEDANDGVEYSIDGK-LMVARRALNTQVK 222
Query: 1023 KEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWID 844
++ QR NIF ++C I+D+VC++I+DGGS NV T LV++L LKT +H + YKL W++
Sbjct: 223 EDAEVQRDNIFHTRCHIKDKVCSMIIDGGSCTNVAITSLVEKLNLKTLKHSRLYKLQWLN 282
Query: 843 EEKQTQV 823
+ + +V
Sbjct: 283 DYGEVKV 289
Score = 34.7 bits (78), Expect(3) = 2e-23
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 817 QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
Q LV F IG Y+D+++CD V M H+LLG
Sbjct: 292 QVLVSFSIGRYKDDVLCDVVPMHAGHILLG 321
Score = 25.0 bits (53), Expect(3) = 2e-23
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDG 693
+G WQ+DR+ HDG
Sbjct: 320 LGRPWQYDRRVTHDG 334
>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1234
Score = 96.7 bits (239), Expect(3) = 5e-22
Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 12/303 (3%)
Frame = -2
Query: 1665 LKKNMRRKFVPSNYQQSLYVHWNSLHQAKMRLLDYIKEFEKLIITCDIKDHEEMKTRRIL 1486
LK+ MR +FVPS Y + L L Q + +Y +E + ++ C++++ E+ R L
Sbjct: 224 LKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFL 283
Query: 1485 GFICGLNDDIKEKLETHPNVTYGDGC*LAAIYEKQRXXXXXXXXXXSFQGLYSTT*A*QR 1306
G GLN +I + ++ LA E++ G
Sbjct: 284 G---GLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAG---------- 330
Query: 1305 EEGY*SLV*MKSEVVCFKCRGRGHYARDCPNPR--------ELSAMEKINTYKLLILQLN 1150
+V C +C+G GH RDCP+ R E S+ + L +L +
Sbjct: 331 ---------RMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAAD 381
Query: 1149 *YGNIMSE----LAPTPIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSK 982
N E A + ++ + + LS +M K E QR +FQ+K
Sbjct: 382 HADNEPPEEHIGAAFADHYESLIVQRV-------------LSAQMEKAEQNQRHTLFQTK 428
Query: 981 CCIQDEVCNLIVDGGSEVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SN 802
C +++ C +I+DGGS N+ +E+V++L L T+ HP PY + W++ + +V N
Sbjct: 429 CVVKERCCRMIIDGGSCKNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHIN 488
Query: 801 FRL 793
F +
Sbjct: 489 FAI 491
Score = 30.4 bits (67), Expect(3) = 5e-22
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 808 VQFQIGSYQDEIMCD-VQMDVCHMLLG 731
+ F IG+Y D + CD V M C++LLG
Sbjct: 487 INFAIGNYHDVVECDVVPMQACNILLG 513
Score = 26.2 bits (56), Expect(3) = 5e-22
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQFDR S H G ++
Sbjct: 512 LGRPWQFDRDSMHHGRSNQY 531
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 90.1 bits (222), Expect(3) = 1e-19
Identities = 50/148 (33%), Positives = 82/148 (55%)
Frame = -2
Query: 1266 VVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKK 1087
+ CFKC GRGH A +CP T + +I++ + SE++ + ++ ++
Sbjct: 311 IKCFKCLGRGHIASECP------------TRRTMIMKADGEITSESEISEEEVEEEEYEE 358
Query: 1086 EINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTEL 907
E LL +M ++ QR NIF ++C I ++C+LIVDGGS NV + L
Sbjct: 359 EAMQGDM--LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTL 416
Query: 906 VDRLCLKTERHPQPYKLNWIDEEKQTQV 823
V +L L+T+ HP+PYKL W+ E+++ +V
Sbjct: 417 VTKLNLETKPHPRPYKLQWLSEDEEVKV 444
Score = 30.4 bits (67), Expect(3) = 1e-19
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 850 DRRRKTNSSI*QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
D K + CL IG Y D+++CD V M+ H+LLG
Sbjct: 439 DEEVKVTQQVEVCLT---IGRYNDKVLCDVVPMEATHVLLG 476
Score = 24.6 bits (52), Expect(3) = 1e-19
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDG 693
+G WQ+D K+ HDG
Sbjct: 475 LGRPWQYDTKAVHDG 489
>ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659640 [Glycine max]
Length = 594
Score = 89.7 bits (221), Expect(3) = 2e-19
Identities = 50/148 (33%), Positives = 82/148 (55%)
Frame = -2
Query: 1266 VVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKK 1087
+ CFKC GRGH A +CP T + +I++ + SE++ + ++ ++
Sbjct: 311 IKCFKCLGRGHIASECP------------TRRTMIMKADGEITSESEISEEEVEEEEYEE 358
Query: 1086 EINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTEL 907
E LL +M ++ QR NIF ++C I ++C+LIVDGGS NV + L
Sbjct: 359 EAMQGDM--LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTL 416
Query: 906 VDRLCLKTERHPQPYKLNWIDEEKQTQV 823
V +L L+T+ HP+PYKL W+ E+++ +V
Sbjct: 417 VTKLNLETKPHPRPYKLQWLSEDEEIKV 444
Score = 30.4 bits (67), Expect(3) = 2e-19
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 850 DRRRKTNSSI*QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
D K + CL IG Y D+++CD V M+ H+LLG
Sbjct: 439 DEEIKVTQQVEVCLT---IGRYNDKVLCDVVPMEATHVLLG 476
Score = 24.6 bits (52), Expect(3) = 2e-19
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDG 693
+G WQ+D K+ HDG
Sbjct: 475 LGRPWQYDTKAVHDG 489
>ref|XP_006607002.1| PREDICTED: uncharacterized protein LOC100788838 [Glycine max]
Length = 519
Score = 89.0 bits (219), Expect(3) = 3e-19
Identities = 50/148 (33%), Positives = 81/148 (54%)
Frame = -2
Query: 1266 VVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVKK 1087
+ CFKC GRGH A +CP T + +I++ + SE++ + ++ +
Sbjct: 311 IKCFKCLGRGHIASECP------------TRRTMIMKADGEITSESEISEEEVEEEEYGE 358
Query: 1086 EINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVCTEL 907
E LL +M ++ QR NIF ++C I ++C+LIVDGGS NV + L
Sbjct: 359 EAMQGDM--LMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASSTL 416
Query: 906 VDRLCLKTERHPQPYKLNWIDEEKQTQV 823
V +L L+T+ HP+PYKL W+ E+++ +V
Sbjct: 417 VTKLNLETKPHPRPYKLQWLSEDEEVKV 444
Score = 30.4 bits (67), Expect(3) = 3e-19
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 850 DRRRKTNSSI*QCLVQFQIGSYQDEIMCD-VQMDVCHMLLG 731
D K + CL IG Y D+++CD V M+ H+LLG
Sbjct: 439 DEEVKVTQQVEVCLT---IGRYNDKVLCDVVPMEATHVLLG 476
Score = 24.6 bits (52), Expect(3) = 3e-19
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDG 693
+G WQ+D K+ HDG
Sbjct: 475 LGRPWQYDTKAVHDG 489
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 84.7 bits (208), Expect(3) = 4e-19
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Frame = -2
Query: 1272 SEVVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVV 1093
S + CFKC GRGH AR+CPN R + ++ Y + E + +
Sbjct: 384 SGIQCFKCGGRGHVARECPNNRTIVVNDQGE-----------YESTSEEEQEDSEEENNL 432
Query: 1092 KKEI-NVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVVC 916
+K+I S +LS +M+ EN QR N+FQ++ +QD+V +I+DGGS N+
Sbjct: 433 EKDICEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLAS 492
Query: 915 TELVDRLCLKTERHPQPYKLNWIDEEKQTQV 823
E+V++L LK +HP PY + W++ ++
Sbjct: 493 KEMVEKLGLKLLKHPHPYHVQWLNNSGSIKI 523
Score = 34.7 bits (78), Expect(3) = 4e-19
Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 808 VQFQIGSYQDEIMCDV-QMDVCHMLLG 731
V F+IG Y D + CDV M VCHMLLG
Sbjct: 529 VPFKIGEYIDTMECDVAPMTVCHMLLG 555
Score = 23.9 bits (50), Expect(3) = 4e-19
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQ+DR S H G ++
Sbjct: 554 LGRPWQYDRSSLHCGRTNQY 573
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 86.3 bits (212), Expect(3) = 9e-19
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Frame = -2
Query: 1269 EVVCFKCRGRGHYARDCPNPREL--------SAMEKINTYKLLILQLN*YGNIMSELAPT 1114
+V+C++C+G GH RDCPN R L S+ ++ L +L + G
Sbjct: 391 DVLCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGT------KE 444
Query: 1113 PIRQQVVKKEINVSSK*PWF*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGS 934
P +Q+ + +LS +M K E QR +FQ+KC I++ C LI+DGGS
Sbjct: 445 PPEEQIGADDAEHYES--LIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDGGS 502
Query: 933 EVNVVCTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SNFRL 793
N+ +++V++L L T+ HP PY + W++ + +V NF +
Sbjct: 503 CNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAI 549
Score = 33.9 bits (76), Expect(3) = 9e-19
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -1
Query: 808 VQFQIGSYQDEIMCD-VQMDVCHMLLG 731
+ F IGSY+D + CD V MD C++LLG
Sbjct: 545 INFAIGSYRDVVDCDVVPMDACNILLG 571
Score = 21.9 bits (45), Expect(3) = 9e-19
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAKQEF 678
+G WQFD H G ++
Sbjct: 570 LGRPWQFDSDCMHHGRSNQY 589
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 80.5 bits (197), Expect(3) = 3e-17
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Frame = -2
Query: 1269 EVVCFKCRGRGHYARDCPNPRELSAMEKINTYKLLILQLN*YGNIMSELAPTPIRQQVVK 1090
+V C +C+G GH RDCP+ R L ++ Y I + + ++ LA + +
Sbjct: 348 DVQCHRCKGFGHVQRDCPSKRVL-VVKNDGEYSSAI---DFDDDTLALLAADHADNEPPE 403
Query: 1089 KEINVSSK*PW---F*GNLLS*KMAKEEN*QRTNIFQSKCCIQDEVCNLIVDGGSEVNVV 919
+ I + + ++LS +M K E QR +FQ+KC +++ C +I+DGGS N+
Sbjct: 404 EHIGAAFADHYESLIMQHVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 463
Query: 918 CTELVDRLCLKTERHPQPYKLNWIDEEKQTQVYDNA*SNFRL 793
+E+V++L L T+ HP PY + W++ + +V NF +
Sbjct: 464 SSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAI 505
Score = 30.4 bits (67), Expect(3) = 3e-17
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 808 VQFQIGSYQDEIMCD-VQMDVCHMLLG 731
+ F IG+Y D + CD V M C++LLG
Sbjct: 501 INFAIGNYHDVVECDVVPMQACNILLG 527
Score = 26.2 bits (56), Expect(3) = 3e-17
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 737 IGCSWQFDRKSKHDGAK 687
+G WQFDR S H G K
Sbjct: 526 LGRPWQFDRDSMHHGKK 542