BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00034509
         (488 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   273   2e-71
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     268   4e-70
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776...   263   2e-68
gb|AAD17357.1| contains similarity to retrovirus-related polypro...   262   4e-68
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         262   4e-68
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   257   1e-66
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   254   6e-66
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   252   4e-65
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   251   7e-65
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   251   7e-65
gb|EMS50467.1| Retrovirus-related Pol polyprotein from transposo...   233   2e-59
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   228   6e-58
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   218   7e-55
gb|EMS67284.1| Spastin [Triticum urartu]                              217   1e-54
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   210   2e-52
gb|ABF97003.1| retrotransposon protein, putative, Ty1-copia subc...   209   4e-52
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   203   2e-50
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     203   2e-50
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   202   4e-50
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       193   2e-47

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  273 bits (698), Expect = 2e-71
 Identities = 127/158 (80%), Positives = 142/158 (89%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQNQ GK+IKALRSDRG EYLSQ F DHL+ CGIVSQLTPP TPQWNGVSERRNRTLLDM
Sbjct: 195 VQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDM 254

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           VRSMMS  DLP  FWG+ALET+AFMLNR PSK+VEKTPYE+WTGKVPNLSFLKIWGCE+Y
Sbjct: 255 VRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKIWGCESY 314

Query: 360 VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            K+L++DKL PKSDKC FVGYPKET+GYYFY+ +D ++
Sbjct: 315 AKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKV 352


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  268 bits (686), Expect = 4e-70
 Identities = 128/158 (81%), Positives = 139/158 (87%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3    VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
            VQN LGKTIK LRSDRG EY+SQEF +HLK CGIV QLTPP TPQWNGVSERRNRTLLDM
Sbjct: 551  VQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDM 610

Query: 180  VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
            VRSMMSQ DLP SFWG+ALETAA  LNR PSK+VEKTPYE+WTG+ P+LSFLKIWGCEAY
Sbjct: 611  VRSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAY 670

Query: 360  VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            VK+L SDKLTPKSDKC  VGYPKET+GYYFYNR   ++
Sbjct: 671  VKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKV 708


>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
           italica]
          Length = 1686

 Score =  263 bits (672), Expect = 2e-68
 Identities = 126/157 (80%), Positives = 140/157 (89%), Gaps = 1/157 (0%)
 Frame = +3

Query: 6   QNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDMV 182
           +NQ GK IKALRSDRG EYLS EF +HLKSCGIV QLTPP TPQ NGVSERRNRTLLDMV
Sbjct: 1   ENQRGKKIKALRSDRGGEYLSHEFSNHLKSCGIVPQLTPPGTPQRNGVSERRNRTLLDMV 60

Query: 183 RSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAYV 362
           RSMMSQ DLP SFWG+ALETAAF LNR PSK+V KTPYE+WTGKVP+LSFLKIWGCE +V
Sbjct: 61  RSMMSQSDLPLSFWGYALETAAFTLNRVPSKSVVKTPYEIWTGKVPSLSFLKIWGCEVFV 120

Query: 363 KKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
           K+L SDK+TPKSDKC+FVGYPKET GY+FYNRS+ ++
Sbjct: 121 KRLQSDKITPKSDKCIFVGYPKETLGYFFYNRSEGKV 157


>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
           thaliana] gi|7267382|emb|CAB77943.1| putative transposon
           protein [Arabidopsis thaliana]
          Length = 769

 Score =  262 bits (669), Expect = 4e-68
 Identities = 125/158 (79%), Positives = 141/158 (89%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           V+N+LGK+IKALRSDRG EYLSQ F DHL+ CGIVSQLTPP TPQ NGVSERRN+TLLDM
Sbjct: 227 VKNKLGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQGNGVSERRNQTLLDM 286

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           VRSMMS  DLP SFWG+ALET  FMLNR PSK+VEKTPYE+WTGKVPNLSFLKI GCEAY
Sbjct: 287 VRSMMSHTDLPSSFWGYALETYVFMLNRCPSKSVEKTPYEIWTGKVPNLSFLKILGCEAY 346

Query: 360 VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
           VK+L++DKL PKSDKC FVGYPKET+GYYFY+ +D ++
Sbjct: 347 VKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKV 384


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  262 bits (669), Expect = 4e-68
 Identities = 125/158 (79%), Positives = 137/158 (86%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN LGKTIK LRSDRG EYLS EF +HLK CGIV QLTPP TPQWN VSERRNRTLLDM
Sbjct: 345 VQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNRVSERRNRTLLDM 404

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           V+SMMSQ DLP  FWG+ALETAAF LNR PSK+V+KT YE+WTGK P+LSFLKIWGCE Y
Sbjct: 405 VQSMMSQTDLPLCFWGYALETAAFTLNRVPSKSVDKTSYEIWTGKRPSLSFLKIWGCEVY 464

Query: 360 VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
           VK+L SDKLTPKSDKC FVGYPKET+GYYFYNR + ++
Sbjct: 465 VKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKV 502


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  257 bits (657), Expect = 1e-66
 Identities = 123/158 (77%), Positives = 136/158 (86%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3    VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
            VQN LGKTIK LRSDRG EYLS EF +HLK CGIV QLTPP TPQWNGVSE RNRTLLDM
Sbjct: 527  VQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDM 586

Query: 180  VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
            VRSMMSQ +L  SFWG+ALET AF LN  PSK+V+KTPYE+WTGK P+LSFLKIWGCE Y
Sbjct: 587  VRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVY 646

Query: 360  VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            VK+L SDKLTPKSDKC FVGYPKET+GYYFYN+ + ++
Sbjct: 647  VKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQEEGKV 684


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  254 bits (650), Expect = 6e-66
 Identities = 122/158 (77%), Positives = 136/158 (86%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3    VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
            VQN L KTIK LRSD G EYLS EF +HLK CGIV QLTPP TPQWNGVSERRNRTLL+M
Sbjct: 1027 VQNHLRKTIKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNM 1086

Query: 180  VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
            VRSMMSQ +L  SFWG+ALETAAF LNR PSK+V+KTPYE+WTGK P+LSFLKIWGCE Y
Sbjct: 1087 VRSMMSQTNLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVY 1146

Query: 360  VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            VK+L SDKLTPKS+KC FVGYPKET+GYY YNR + ++
Sbjct: 1147 VKRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKV 1184


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1050

 Score =  252 bits (643), Expect = 4e-65
 Identities = 119/151 (78%), Positives = 131/151 (86%), Gaps = 1/151 (0%)
 Frame = +3

Query: 24  TIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDMVRSMMSQ 200
           TIK LRSDRG EYLS EF +HLK CGIV QLTPP TPQWNGVSERRNRTLLD+VRSMMSQ
Sbjct: 354 TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDIVRSMMSQ 413

Query: 201 VDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAYVKKLVSD 380
            DLP SFW +ALE AAF LN+ PSK+V KTPYE+WTGK P+LSFLKIWGCE YVK+L SD
Sbjct: 414 TDLPLSFWAYALEKAAFTLNKVPSKSVNKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 473

Query: 381 KLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
           KLTPKSDKC FVGYPKET+GYYFYNR + ++
Sbjct: 474 KLTPKSDKCFFVGYPKETKGYYFYNREEGKV 504


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  251 bits (641), Expect = 7e-65
 Identities = 122/160 (76%), Positives = 136/160 (85%), Gaps = 3/160 (1%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN L KTIK LRSDRG EY S EF +HLK CGIV QLTPP TPQ NGVS+RRNRTLLDM
Sbjct: 100 VQNHLDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDM 159

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           VRSMMSQ DLP SFWG+ALETA F +NR PSK+++KTPYE+WTGK P+LSFLKIWGCE Y
Sbjct: 160 VRSMMSQTDLPLSFWGYALETAVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVY 219

Query: 360 VKKLVSDKLTP--KSDKCLFVGYPKETRGYYFYNRSDPRI 473
           VK+L SDKLTP  KSDKC FVGYPKET+GYYFYNR + ++
Sbjct: 220 VKRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKV 259


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  251 bits (641), Expect = 7e-65
 Identities = 122/160 (76%), Positives = 136/160 (85%), Gaps = 3/160 (1%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN L KTIK LRSDRG EY S EF +HLK CGIV QLTPP TPQ NGVS+RRNRTLLDM
Sbjct: 100 VQNHLDKTIKYLRSDRGGEYWSLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDM 159

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           VRSMMSQ DLP SFWG+ALETA F +NR PSK+++KTPYE+WTGK P+LSFLKIWGCE Y
Sbjct: 160 VRSMMSQTDLPLSFWGYALETAVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVY 219

Query: 360 VKKLVSDKLTP--KSDKCLFVGYPKETRGYYFYNRSDPRI 473
           VK+L SDKLTP  KSDKC FVGYPKET+GYYFYNR + ++
Sbjct: 220 VKRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKV 259


>gb|EMS50467.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Triticum
            urartu]
          Length = 1808

 Score =  233 bits (594), Expect = 2e-59
 Identities = 117/158 (74%), Positives = 127/158 (80%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3    VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
            V+N   K IK LRSDRG EYLS EF  HLK CGIVSQLTPP TPQ NGVSERRN TLLDM
Sbjct: 1143 VKNHRNKKIKFLRSDRGGEYLSYEFVLHLKQCGIVSQLTPPGTPQRNGVSERRNHTLLDM 1202

Query: 180  VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
            VRSMMS  DLP SFWG+ALETAAF LNR PSK+VE TPYELW GK   LSFLK+WGC+AY
Sbjct: 1203 VRSMMSLTDLPLSFWGYALETAAFTLNRAPSKSVETTPYELWFGKKHKLSFLKVWGCDAY 1262

Query: 360  VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            VKKL  DKL P S+KC+F+GYPKET GY FY+RS+  I
Sbjct: 1263 VKKLQPDKLEPTSEKCVFIGYPKETVGYTFYHRSEGNI 1300


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score =  228 bits (581), Expect = 6e-58
 Identities = 110/154 (71%), Positives = 125/154 (81%), Gaps = 1/154 (0%)
 Frame = +3

Query: 15  LGKTIKALRSDRGEYLSQEFD-DHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDMVRSM 191
           LGK  KA  + + E  S+     +   CGIV QLTPP TPQWNGVSERRNRTLLDMVRSM
Sbjct: 226 LGKMTKAPFTGQSERASELLGLVYTDECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSM 285

Query: 192 MSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAYVKKL 371
           MSQ DLP SFWG+ALETAAF LNR PSK+++KTPYE+WTGK P+LSFLKIWGCE YVK+L
Sbjct: 286 MSQTDLPLSFWGYALETAAFTLNRVPSKSLDKTPYEIWTGKRPSLSFLKIWGCEVYVKRL 345

Query: 372 VSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            SDKLTPKSDK  FVGYPKET+GYYFYNR + ++
Sbjct: 346 QSDKLTPKSDKYFFVGYPKETKGYYFYNREEDKV 379


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  218 bits (555), Expect = 7e-55
 Identities = 109/140 (77%), Positives = 117/140 (83%), Gaps = 1/140 (0%)
 Frame = +3

Query: 3    VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
            VQN LGKTIK LRSDRG EYLS EF +H K CGIV QLTPP TPQWN VSERRNRTLLDM
Sbjct: 603  VQNHLGKTIKYLRSDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDM 662

Query: 180  VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
            VRSMMSQ +LP SF G+ALET AF LN  PSK+V+KTPYE+WTG  P+LSFLKIWG E Y
Sbjct: 663  VRSMMSQTNLPLSFSGYALETTAFTLNWVPSKSVDKTPYEIWTGNRPSLSFLKIWGYEVY 722

Query: 360  VKKLVSDKLTPKSDKCLFVG 419
            VK+L SDKLTPKSDKC FVG
Sbjct: 723  VKRLQSDKLTPKSDKCFFVG 742


>gb|EMS67284.1| Spastin [Triticum urartu]
          Length = 1541

 Score =  217 bits (552), Expect = 1e-54
 Identities = 104/142 (73%), Positives = 116/142 (81%)
 Frame = +3

Query: 48  RGEYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDMVRSMMSQVDLPKSFWG 227
           +GEYLS EF  +LK CGIVS LTPP TPQ NGVSERRNRTLLDMVRSMMS  DLP SFWG
Sbjct: 368 KGEYLSYEFGLYLKQCGIVSHLTPPGTPQRNGVSERRNRTLLDMVRSMMSLTDLPLSFWG 427

Query: 228 HALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAYVKKLVSDKLTPKSDKC 407
           +ALETAAF LNR PSK+VE TPYE W  K P L FLK+WGC+AYV+KL  DKL PKS+KC
Sbjct: 428 YALETAAFTLNRAPSKSVETTPYEPWFSKKPKLPFLKVWGCDAYVQKLQPDKLKPKSEKC 487

Query: 408 LFVGYPKETRGYYFYNRSDPRI 473
           +F+GYPKET GY FY+RS  +I
Sbjct: 488 VFIGYPKETIGYTFYHRSGGKI 509


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 810

 Score =  210 bits (534), Expect = 2e-52
 Identities = 104/158 (65%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN LGKTIK LRSDRG +YLS EF +HLK C IV QLT P TPQWNGVSERRNRTLLDM
Sbjct: 260 VQNHLGKTIKYLRSDRGGKYLSLEFGNHLKECRIVPQLTLPGTPQWNGVSERRNRTLLDM 319

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           +  + S+               AF +N+ PSK+V+K PYE+WTGK P+LSFLKIWGCE Y
Sbjct: 320 LLGLRSR-------------DTAFTINKVPSKSVDKIPYEIWTGKRPSLSFLKIWGCEVY 366

Query: 360 VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
           VK+L SDKLTPKSDKC FVGY KET+GYYFYNR + ++
Sbjct: 367 VKRLQSDKLTPKSDKCFFVGYHKETKGYYFYNREEGKV 404


>gb|ABF97003.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 404

 Score =  209 bits (531), Expect = 4e-52
 Identities = 105/156 (67%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
 Frame = +3

Query: 9   NQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDMVR 185
           N   KTIK LRSDRG EYLS EF +HLK CGIV QLTPP TPQWNGVSERRN TLLDMVR
Sbjct: 211 NSKTKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNPTLLDMVR 270

Query: 186 SMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAYVK 365
           SMMSQ DLP SFWG+A ET AF LNR PSK+V+KTPYE+WTGK P+LSFLKIWGCE    
Sbjct: 271 SMMSQTDLPLSFWGYAPETVAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEI--- 327

Query: 366 KLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
                            GYPKET+GYYFYNR + ++
Sbjct: 328 ------------NASLWGYPKETKGYYFYNREEGKV 351


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1248

 Score =  203 bits (517), Expect = 2e-50
 Identities = 103/158 (65%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN LGKTIK LRSDRG EYLS E+ +HLK CGIV QLTPP TPQWN VSERRNR LLDM
Sbjct: 516 VQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDM 575

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           VRSMMSQ D+P SFWG+ALETAAF LNR PSK+V+KTPYE+WTGK P+LSFLKIW CE  
Sbjct: 576 VRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE-- 633

Query: 360 VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
                                  ET+GYYFYNR + ++
Sbjct: 634 -----------------------ETKGYYFYNREEGKV 648


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  203 bits (517), Expect = 2e-50
 Identities = 103/158 (65%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN LGKTIK LRSDRG EYLS E+ +HLK CGIV QLTPP TPQWN VSERRNR LLDM
Sbjct: 429 VQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDM 488

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
           VRSMMSQ D+P SFWG+ALETAAF LNR PSK+V+KTPYE+WTGK P+LSFLKIW CE  
Sbjct: 489 VRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE-- 546

Query: 360 VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
                                  ET+GYYFYNR + ++
Sbjct: 547 -----------------------ETKGYYFYNREEGKV 561


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score =  202 bits (514), Expect = 4e-50
 Identities = 98/118 (83%), Positives = 104/118 (88%), Gaps = 1/118 (0%)
 Frame = +3

Query: 3   VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
           VQN LGKTIK LRSDRG EYLS EF +HLK CGIV QLTPP TPQWNGVSERRNRTLLDM
Sbjct: 436 VQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDM 495

Query: 180 VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCE 353
           VRSMMSQ DLP SFWG+ LETAAF LNR PSK+V+KTPYE+WTGK P+LSFLKIWGCE
Sbjct: 496 VRSMMSQTDLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCE 553


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  193 bits (491), Expect = 2e-47
 Identities = 95/158 (60%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3    VQNQLGKTIKALRSDRG-EYLSQEFDDHLKSCGIVSQLTPPETPQWNGVSERRNRTLLDM 179
            V+N++GKTIK LRSDRG EY+  +F D+L   GI SQL+ P TPQ NGVSERRNRTLLDM
Sbjct: 556  VENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDM 615

Query: 180  VRSMMSQVDLPKSFWGHALETAAFMLNRTPSKAVEKTPYELWTGKVPNLSFLKIWGCEAY 359
            VRSMMS   LP SFWG+ALETA  +LN  PSK+V +TPYELW G+  +L + +IWGC A+
Sbjct: 616  VRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAH 675

Query: 360  VKKLVSDKLTPKSDKCLFVGYPKETRGYYFYNRSDPRI 473
            V      KL P+S  CLFVGYPKE+RG  FY+  + ++
Sbjct: 676  VLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKV 713