BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00029839
         (1879 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   554   0.0  
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   547   0.0  
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     547   0.0  
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   565   0.0  
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   507   0.0  
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   548   0.0  
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   467   0.0  
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   477   0.0  
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   565   e-177
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   458   e-176
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]   467   e-174
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       446   e-172
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc...   446   e-166
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     577   e-162
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776...   371   e-160
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   424   e-155
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     424   e-155
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   416   e-152
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl...   371   e-140
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]   371   e-140

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  554 bits (1428), Expect(3) = 0.0
 Identities = 262/372 (70%), Positives = 312/372 (83%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            +SIYGLKQASRSWN RF+E IK F F+RN +EPCVYKK SGS V FLVLYVDDIL++GND
Sbjct: 589  RSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGND 648

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IP+L+SVK WLG  FSMKD+GEA YILGI+IYRDR  ++IGLSQ+TYIDKVL RFNM +S
Sbjct: 649  IPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDS 708

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGF+PMSHGI+LSK Q P T DE E+MSKIP+ASAIGSIMYAM+ TRPDV+CALSMTSR
Sbjct: 709  KKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSR 768

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PGE HW   +NI KYL RTK++FLVYGG  EL V GYTDASFQTDKDDFRSQSG+ 
Sbjct: 769  YQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFF 828

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+S+KQ T+ADST EAEYI  SEAAKE VWI+KF++ELGVVPSI+ P+ L+
Sbjct: 829  FCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLY 888

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GAIAQAKEP+ H++SKH++R+YH +RE +D GD+ + ++ TD NVAD  TK L Q 
Sbjct: 889  CDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQP 948

Query: 85   KHEKYLVEMGIK 50
            KHE +   +GI+
Sbjct: 949  KHESHTTAIGIR 960



 Score =  147 bits (370), Expect(3) = 0.0
 Identities = 71/93 (76%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GNI ++KA LVA+GYKQ+HGIDYDET+SPVAMLKSIRILLA A++YDYEIWQMDVKTAFL
Sbjct: 500  GNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFL 559

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+LE  VYMTQPEGF  P+   KVCKL +S+Y
Sbjct: 560  NGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIY 592



 Score =  118 bits (295), Expect(3) = 0.0
 Identities = 64/152 (42%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
 Frame = -3

Query: 1877 RGGVFLERECLSQKTSGRNIHLEEIQDGQPQITSEVVASPVRAQEIEQVSTTDVVVXXXX 1698
            R G FLERE LS+ TSG  + LEE+++ Q  + +        +QE  Q+    VV     
Sbjct: 356  RNGAFLEREFLSKGTSGSKVLLEEVREPQGDVPT--------SQEEHQLDLRRVVEPILV 407

Query: 1697 XXXXXXXXXXXXSEGYL---VYDGYEIFLLDRDEPTTYRAAITSPDSEKWHKAMKSEMES 1527
                                V D + +F+++ DEPT+Y  A+  PDS+KW +A KSEMES
Sbjct: 408  EPEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAAKSEMES 467

Query: 1526 MYENEVWNLVDLPDGARPIECKWIYKIKTDME 1431
            M +N+VW LVDLPDG +PIECKWI+K K DM+
Sbjct: 468  MSQNKVWTLVDLPDGVKPIECKWIFKKKIDMD 499


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  547 bits (1409), Expect(3) = 0.0
 Identities = 271/357 (75%), Positives = 308/357 (86%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIY LKQASRSWN RFDEV+K+ GF++N +EPCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 891  KSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGND 950

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVK  L  +FSMKDLGEA YILGI+IYRDRSKR+IGLSQ+TYIDKVL RFNM++S
Sbjct: 951  IPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 1010

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L K Q PQT+DE  KMS IP+ASAIGSIMYAM+CTR DVS ALS TSR
Sbjct: 1011 KKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSR 1070

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+  GE HW A KNILKYL RTK+ FLVYG Q EL V GYTDASFQTDKDDFRSQSG+V
Sbjct: 1071 YQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFV 1130

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+SSKQDT+ADST EAEYI  SEAAKEAVWIKKFVS+LGV+ S +SP+ L+
Sbjct: 1131 FCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLY 1190

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSL 95
            CD+ GAIAQAKEPR H++SKH+ R+YH +RE V  GD+ + KIHTD NVADPLTK L
Sbjct: 1191 CDNSGAIAQAKEPRSHQKSKHILRRYHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1247



 Score =  146 bits (368), Expect(3) = 0.0
 Identities = 68/93 (73%), Positives = 83/93 (89%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            G + ++ ARLVA+G++QI G+DYDETFSPVAMLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 802  GTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFL 861

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L+ DVYMTQP+GFVDP    K+CKL KS+Y
Sbjct: 862  NGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIY 894



 Score =  122 bits (306), Expect(3) = 0.0
 Identities = 70/157 (44%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
 Frame = -3

Query: 1877 RGGVFLERECLSQKTSGRNIHLEEIQDG--------QPQITSEVVASPVRAQEIEQVSTT 1722
            R GVFLE+E +S+K SG  + L+EIQ+         QPQ+  +VV      Q++EQV   
Sbjct: 652  RHGVFLEKEFISRKDSGSMVRLKEIQETPENASTSTQPQVEQDVV------QQVEQV-VV 704

Query: 1721 DVVVXXXXXXXXXXXXXXXXSEGYLVYDGYEIFLLDRDEPTTYRAAITSPDSEKWHKAMK 1542
            + VV                    L     +I LLD DEPTTY  A+  PD+EKW  AMK
Sbjct: 705  EPVVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMK 764

Query: 1541 SEMESMYENEVWNLVDLPDGARPIECKWIYKIKTDME 1431
            SE+ESM+ N+VWNLVD PDG + IECKWI+K  TD++
Sbjct: 765  SEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVD 801


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  547 bits (1409), Expect(3) = 0.0
 Identities = 271/357 (75%), Positives = 308/357 (86%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIY LKQASRSWN RFDEV+K+ GF++N +EPCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 804  KSIYRLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGND 863

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVK  L  +FSMKDLGEA YILGI+IYRDRSKR+IGLSQ+TYIDKVL RFNM++S
Sbjct: 864  IPMLESVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 923

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L K Q PQT+DE  KMS IP+ASAIGSIMYAM+CTR DVS ALS TSR
Sbjct: 924  KKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSR 983

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+  GE HW A KNILKYL RTK+ FLVYG Q EL V GYTDASFQTDKDDFRSQSG+V
Sbjct: 984  YQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFV 1043

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+SSKQDT+ADST EAEYI  SEAAKEAVWIKKFVS+LGV+ S +SP+ L+
Sbjct: 1044 FCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLY 1103

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSL 95
            CD+ GAIAQAKEPR H++SKH+ R+YH +RE V  GD+ + KIHTD NVADPLTK L
Sbjct: 1104 CDNSGAIAQAKEPRSHQKSKHILRRYHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1160



 Score =  146 bits (368), Expect(3) = 0.0
 Identities = 68/93 (73%), Positives = 83/93 (89%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            G + ++ ARLVA+G++QI G+DYDETFSPVAMLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 715  GTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFL 774

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L+ DVYMTQP+GFVDP    K+CKL KS+Y
Sbjct: 775  NGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIY 807



 Score =  122 bits (306), Expect(3) = 0.0
 Identities = 70/157 (44%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
 Frame = -3

Query: 1877 RGGVFLERECLSQKTSGRNIHLEEIQDG--------QPQITSEVVASPVRAQEIEQVSTT 1722
            R GVFLE+E +S+K SG  + L+EIQ+         QPQ+  +VV      Q++EQV   
Sbjct: 565  RHGVFLEKEFISRKDSGSMVRLKEIQETPENASTSTQPQVEQDVV------QQVEQV-VV 617

Query: 1721 DVVVXXXXXXXXXXXXXXXXSEGYLVYDGYEIFLLDRDEPTTYRAAITSPDSEKWHKAMK 1542
            + VV                    L     +I LLD DEPTTY  A+  PD+EKW  AMK
Sbjct: 618  EPVVEAPASRRSERIRRTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMK 677

Query: 1541 SEMESMYENEVWNLVDLPDGARPIECKWIYKIKTDME 1431
            SE+ESM+ N+VWNLVD PDG + IECKWI+K  TD++
Sbjct: 678  SEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVD 714


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  565 bits (1455), Expect(3) = 0.0
 Identities = 276/372 (74%), Positives = 320/372 (86%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFDE IK FGF++N +EPCVY KVSGS +V L+LYVDDIL+IGND
Sbjct: 938  KSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGND 997

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVKA L  +FSMKDLGEA YILGIKIYRDRS+R+IGLSQ+TYIDKVL RFNM+N+
Sbjct: 998  IPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQNT 1057

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGIS SK Q P T+DE ++M+ IP+ASAIGSIMYAMICTR DVS ALS+TSR
Sbjct: 1058 KKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSIMYAMICTRQDVSYALSVTSR 1117

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQA PGE HWTA KNILKYL RTK+ FL+YGG  EL V GYTDASFQTDKDD+RSQSG+V
Sbjct: 1118 YQADPGECHWTAVKNILKYLRRTKDAFLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFV 1177

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+SSKQ+T+ADST +AEYI  SEAAKE VWI+ F++ELGVVPS +SP+ L+
Sbjct: 1178 FILNGGAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSASSPMDLY 1237

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GAIAQAKEPR H++SKH+ R+YH +RE VD GD+ + KIHTD NVADPLTK L+Q 
Sbjct: 1238 CDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQP 1297

Query: 85   KHEKYLVEMGIK 50
            KHE +   +GI+
Sbjct: 1298 KHEAHTRAIGIR 1309



 Score =  149 bits (375), Expect(3) = 0.0
 Identities = 71/93 (76%), Positives = 83/93 (89%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ +HKARLVA+G++Q+ G+DYDETFS VAMLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 849  GNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFL 908

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG L  DVYMTQPEGFVDP+   KVCKL KS+Y
Sbjct: 909  NGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIY 941



 Score = 94.7 bits (234), Expect(3) = 0.0
 Identities = 42/68 (61%), Positives = 53/68 (77%)
 Frame = -3

Query: 1634 YEIFLLDRDEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKWI 1455
            ++I LL+ DEP TY+ A+  PDSEKW  AMKSE++SM +N+VWNLVD  DG + IECKWI
Sbjct: 781  HDILLLNNDEPNTYKEAMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWI 840

Query: 1454 YKIKTDME 1431
            YK K DM+
Sbjct: 841  YKKKIDMD 848


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  507 bits (1305), Expect(3) = 0.0
 Identities = 260/374 (69%), Positives = 298/374 (79%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFDEV+K++   +                  LVLYVDDIL+IGND
Sbjct: 690  KSIYGLKQASRSWNIRFDEVVKAWALSKTKKS--------------LVLYVDDILLIGND 735

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVK  L  +FSMKDLGEA YILGI+IYRDRSKR+IGLSQ+TYIDKVL RFNM++S
Sbjct: 736  IPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 795

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L K Q PQT+DE  KMS IP+ASAIGSIMYAM+CT PDVS ALS TSR
Sbjct: 796  KKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTHPDVSYALSATSR 855

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PGE HW A KNILKYL RTK+ FLVYGGQ EL V GYTDASFQTDKDDFRSQSG+V
Sbjct: 856  YQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFV 915

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+SSKQDT+ DS  EAEYI  SEAAKEAVWIKKFVS+LGV+ S +SP+ L+
Sbjct: 916  FCLNGGAVSWKSSKQDTVVDSITEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLY 975

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GAIAQAKEPR H++S ++  +YH +RE V  G + + KIHTD NVADPLTK L Q 
Sbjct: 976  CDNSGAIAQAKEPRSHQKS-NILWRYHLIREIVGRGVVKICKIHTDFNVADPLTKPLPQP 1034

Query: 85   KHEKYLVEMGIKPI 44
            KH+ +   MG++ I
Sbjct: 1035 KHQAHTRAMGVRYI 1048



 Score =  137 bits (346), Expect(3) = 0.0
 Identities = 64/93 (68%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G++QI G+DYDETFS VAMLKSI+I+LAI +Y+DYEIWQMDVKTAF+
Sbjct: 601  GNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKSIQIVLAITAYFDYEIWQMDVKTAFV 660

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+++ DVYMTQ +GFVDP    K+CKL KS+Y
Sbjct: 661  NGNIDEDVYMTQLKGFVDPQSAKKICKLQKSIY 693



 Score = 75.1 bits (183), Expect(3) = 0.0
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = -3

Query: 1637 GYEIFLLDRDEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKW 1458
            GY + L + DEPTTY  A+          AMKSE+ESM+ N+VWNLVD PDG + IE KW
Sbjct: 538  GYGVHLRENDEPTTYEEAMVGLG------AMKSEIESMHVNQVWNLVDPPDGVKAIEWKW 591

Query: 1457 IYKIKTDME 1431
            ++K KTD++
Sbjct: 592  VFKKKTDVD 600


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  548 bits (1413), Expect(2) = 0.0
 Identities = 274/374 (73%), Positives = 313/374 (83%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            +SIYGLKQASRSWN RFDEV+K+ GF+RN +EPCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 813  QSIYGLKQASRSWNIRFDEVVKALGFVRNEEEPCVYKKISGSALVFLILYVDDILLIGND 872

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            I MLESVK  L  +FSMKDLGEA YILGI+IYRDRSKR+IGLSQ+TYIDKVL RFNM++S
Sbjct: 873  ISMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 932

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L K Q PQT+DE  KMS IP+ASAIGSIMYAM+CTRPDVS ALS TSR
Sbjct: 933  KKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSR 992

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PGE HW A KNILKYL RTK+ FL YGGQ EL V GYTDASFQ DKDDFRSQSG+V
Sbjct: 993  YQSDPGESHWIAVKNILKYLRRTKDMFLAYGGQEELVVNGYTDASFQIDKDDFRSQSGFV 1052

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+SSKQD + DST EAEYI    AA EAVWIKKFVS+LGV+ S +S + L+
Sbjct: 1053 FCLNGGAVSWKSSKQDIVVDSTTEAEYI----AASEAVWIKKFVSQLGVMTSASSSMDLY 1108

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GAIAQAKEPR H++SKH+ R+YH +RE V  GD+ + KIHTD NVADPLTK L Q 
Sbjct: 1109 CDNSGAIAQAKEPRSHQKSKHILRQYHLIREIVGRGDVKICKIHTDLNVADPLTKPLPQP 1168

Query: 85   KHEKYLVEMGIKPI 44
            KHE +   MGI+ I
Sbjct: 1169 KHEAHTRAMGIRYI 1182



 Score =  140 bits (353), Expect(2) = 0.0
 Identities = 69/107 (64%), Positives = 86/107 (80%), Gaps = 1/107 (0%)
 Frame = -2

Query: 1473 HRMQVDL*DKD*YGGNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYY 1294
            HR + D   K    GN+ ++KARLVA+G++QI G+DYDETFSPVAMLK I I+LAIA+Y+
Sbjct: 710  HRFREDPKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYF 769

Query: 1293 DYEIWQMDVKTAFLNGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            DYEIWQM VKTAFLNG+L+ DVYMTQP+GF DP    K+CKL +S+Y
Sbjct: 770  DYEIWQMYVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIY 816


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  467 bits (1201), Expect(3) = 0.0
 Identities = 240/372 (64%), Positives = 278/372 (74%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFDEV+K+ GF++N +EPCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 1406 KSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGND 1465

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVK  L  +FSMKDLGEA YI+GI+IYRDRSKR+IGLSQ+TYIDKVL RFNM++S
Sbjct: 1466 IPMLESVKTSLKNSFSMKDLGEAAYIMGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 1525

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+  K Q PQT+DE  KMS IP+A AIGSIMYAM+CTR DVS ALS TSR
Sbjct: 1526 KKGFLPMSHGINHGKNQCPQTTDERNKMSVIPYAWAIGSIMYAMLCTRIDVSYALSATSR 1585

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PGE HW A KNILKYL RTK+ FLVYGGQ EL V GY DASFQTDKDDFR QSG+V
Sbjct: 1586 YQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYIDASFQTDKDDFRLQSGFV 1645

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNG AVSW+S                                    V+ S +SP+ L+
Sbjct: 1646 FCLNGRAVSWKS------------------------------------VMTSASSPMNLY 1669

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GAI QAKE R H++SKH+ R+YH + E V  GD+ + KIHTD NVAD LTK L Q 
Sbjct: 1670 CDNSGAIVQAKEHRSHQKSKHILRRYHLIHEIVGRGDVKICKIHTDLNVADLLTKPLPQP 1729

Query: 85   KHEKYLVEMGIK 50
            KHE +   MGI+
Sbjct: 1730 KHEAHTRAMGIR 1741



 Score =  118 bits (295), Expect(3) = 0.0
 Identities = 69/154 (44%), Positives = 87/154 (56%), Gaps = 8/154 (5%)
 Frame = -3

Query: 1877 RGGVFLERECLSQKTSGRNIHLEEIQDG--------QPQITSEVVASPVRAQEIEQVSTT 1722
            R GVFL++E +S+K SG  + LEEIQ+         QPQ   + V      Q++EQV   
Sbjct: 1188 RHGVFLKKEFISRKDSGSIVRLEEIQETPENASTSTQPQQAEQDVV-----QQVEQV-VV 1241

Query: 1721 DVVVXXXXXXXXXXXXXXXXSEGYLVYDGYEIFLLDRDEPTTYRAAITSPDSEKWHKAMK 1542
            + VV                    L     +I LLD DEPTTY  A+  PDSEKW  AMK
Sbjct: 1242 EPVVEAPASRRSERIRRTPARYALLTIGQRDILLLDNDEPTTYEEAMVGPDSEKWPGAMK 1301

Query: 1541 SEMESMYENEVWNLVDLPDGARPIECKWIYKIKT 1440
            SE+ESM+ N+VWNLVD PDG + IECKW++K KT
Sbjct: 1302 SEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKT 1335



 Score =  114 bits (285), Expect(3) = 0.0
 Identities = 51/67 (76%), Positives = 64/67 (95%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G++QI G+DYDETFSPVAMLKSI+I+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 1339 GNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIQIVLAIAAYFDYEIWQMDVKTAFL 1398

Query: 1251 NGHLEND 1231
            NG+L+ D
Sbjct: 1399 NGNLDED 1405


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  477 bits (1227), Expect(3) = 0.0
 Identities = 241/371 (64%), Positives = 282/371 (76%)
 Frame = -1

Query: 1183 EGMQA*KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDI 1004
            E +   KSIYGLKQASRSWN RFDEV+K+ GF++N +EPCVYKK+SGS +          
Sbjct: 595  ENLDEDKSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSAL---------- 644

Query: 1003 LIIGNDIPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSR 824
                                    DL EA YIL I+IYRDRS+R+IG SQ+TYIDKVL R
Sbjct: 645  ------------------------DLREAAYILSIRIYRDRSRRLIG-SQSTYIDKVLKR 679

Query: 823  FNMKNSKKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCA 644
            FNM++SKKGFLP+SHGI+L K Q PQT+DE  KMS IP+ASAIGSIMYAM+CTRPDV  A
Sbjct: 680  FNMQDSKKGFLPLSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRPDVPYA 739

Query: 643  LSMTSRYQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFR 464
            LS TS+YQ+ PGE HW A KNILKYL RTK+ FL+YGGQ EL V  YTDASFQTDKDDFR
Sbjct: 740  LSATSQYQSDPGESHWIAVKNILKYLRRTKDMFLIYGGQEELVVNNYTDASFQTDKDDFR 799

Query: 463  SQSGYVFTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSIT 284
            SQSG+VF LNGGAVSW+SSKQDT+ADST EAEYI  SEAAKEA WIKKFVS+LGV+ S +
Sbjct: 800  SQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAAWIKKFVSQLGVMTSAS 859

Query: 283  SPVKLFCDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLT 104
            SP+ L+CD+ GAIAQAKEPR H++SKH+ R+YH +RE V  GD+ + KIHTD NV DPLT
Sbjct: 860  SPMDLYCDNSGAIAQAKEPRSHRKSKHILRRYHLIREIVGRGDVKICKIHTDLNVVDPLT 919

Query: 103  KSLSQQKHEKY 71
            K L + KHE +
Sbjct: 920  KPLPRPKHETH 930



 Score =  115 bits (287), Expect(3) = 0.0
 Identities = 68/157 (43%), Positives = 88/157 (56%), Gaps = 8/157 (5%)
 Frame = -3

Query: 1877 RGGVFLERECLSQKTSGRNIHLEEIQDG--------QPQITSEVVASPVRAQEIEQVSTT 1722
            R  VFLE+E +S K SG  + LEEIQ+         QPQ   + V      Q++EQV   
Sbjct: 383  RHDVFLEKEFISTKDSGIMVRLEEIQETPKNASTSTQPQQDEQDVV-----QQVEQV-VV 436

Query: 1721 DVVVXXXXXXXXXXXXXXXXSEGYLVYDGYEIFLLDRDEPTTYRAAITSPDSEKWHKAMK 1542
            + VV                    L     +I LLD D+PTTY  A+  PDS+KW  AMK
Sbjct: 437  EPVVEAPASRRSERIWRTPARYALLTTGQRDILLLDNDKPTTYEEAMVGPDSKKWLGAMK 496

Query: 1541 SEMESMYENEVWNLVDLPDGARPIECKWIYKIKTDME 1431
            SE+ESM+ N+VWNLVD PDG + IECKW++K KTD++
Sbjct: 497  SEIESMHVNQVWNLVDPPDGVKGIECKWVFKKKTDLD 533



 Score =  101 bits (252), Expect(3) = 0.0
 Identities = 46/67 (68%), Positives = 58/67 (86%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G++QI  +DYD TFS V MLKSIRI+LAI +Y+DYEIWQMDVKTAFL
Sbjct: 534  GNVHIYKARLVAKGFRQIQSVDYDGTFSSVGMLKSIRIILAIPAYFDYEIWQMDVKTAFL 593

Query: 1251 NGHLEND 1231
            N +L+ D
Sbjct: 594  NENLDED 600


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  565 bits (1455), Expect(2) = e-177
 Identities = 273/372 (73%), Positives = 321/372 (86%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFDE IK FGF++N +EPCVY KVSGS +V L+LYVDDIL++GND
Sbjct: 522  KSIYGLKQASRSWNIRFDEEIKRFGFIKNKEEPCVYMKVSGSTLVILILYVDDILLVGND 581

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVK+ L K+FSMKDLG+A YILGI+IYRDRSKR+IGLSQ  YIDKVL+RFNM+NS
Sbjct: 582  IPMLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQNS 641

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            K+GFLPM+HGI+LSK Q P T+DE +KMS IP+ASAIGSIMYAMICTRPDVS ALS+TSR
Sbjct: 642  KRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSYALSVTSR 701

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQA P E HWTA KNILKYL RTK+ FLVYGG  EL V GYTDASFQTDKDD+RSQSG+V
Sbjct: 702  YQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDYRSQSGFV 761

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F LNGGAVSW+SSKQ+T+ADST EAEYI  SEAAKE VWI+ F++ELG+VPS +SP+ L+
Sbjct: 762  FILNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSASSPMDLY 821

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GAIAQAKEPR H++SKH+ R+YH +RE VD GD+ + K+HTD N+ADPLTK L+Q 
Sbjct: 822  CDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPLTKPLTQP 881

Query: 85   KHEKYLVEMGIK 50
            KHE +   +GI+
Sbjct: 882  KHEAHTRAIGIR 893



 Score = 88.2 bits (217), Expect(2) = e-177
 Identities = 42/53 (79%), Positives = 47/53 (88%), Gaps = 1/53 (1%)
 Frame = -2

Query: 1311 AIASYYDYEIWQMDVKTAFLNGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            AIA+Y+DYEIWQMDVKTAFLNG+L  DVYMTQPEGFVDP+   KVCKL KS+Y
Sbjct: 473  AIAAYFDYEIWQMDVKTAFLNGNLHEDVYMTQPEGFVDPNNASKVCKLQKSIY 525


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  458 bits (1179), Expect(3) = e-176
 Identities = 218/372 (58%), Positives = 285/372 (76%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            +SIYGLKQASRSWN  F+E IKS+GF +N  EPCVYK++ G KVVFLVLYVDDIL+IGND
Sbjct: 292  RSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGND 351

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            +  L  VK WL   F MKDLGEA YILGI++ RDR  R++ LSQ  YIDKVL +F M+NS
Sbjct: 352  VESLSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAMENS 411

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKG LP  HG+ LSK+Q P+T  + EKM ++P+ASA+GS+MYAM+CTRPD+  A+ + SR
Sbjct: 412  KKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPYASAVGSLMYAMLCTRPDICFAVGVVSR 471

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PG  HW A K+ILKYL RT+N  LVY G+ EL  IGYTD+ FQ+D+D  +S S  V
Sbjct: 472  YQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGR-ELIPIGYTDSDFQSDRDSRKSTSEAV 530

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            FTL GGA+ WRS KQ  +ADST EAEY+   EAAKEAVW+++F+ EL VVP++  P++L+
Sbjct: 531  FTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAAKEAVWLREFLKELEVVPNMHEPIRLY 590

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GA+A AKEPR+H++ KH++RK+H +RE V  GD+ V+KI + +N+ADP TK+L  +
Sbjct: 591  CDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKIASANNIADPFTKTLPAR 650

Query: 85   KHEKYLVEMGIK 50
              E++L  MG++
Sbjct: 651  SFEQHLEGMGLR 662



 Score =  130 bits (326), Expect(3) = e-176
 Identities = 63/93 (67%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            G +   KARLVA+G+ Q  G+DY++TFSPV MLKSIRILL+I +YYDYEIWQMDVKT FL
Sbjct: 203  GKVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFL 262

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NGHLE  +YM QPEGFV  D   KVCKL +S+Y
Sbjct: 263  NGHLEETIYMVQPEGFVVKDQEQKVCKLQRSIY 295



 Score = 81.6 bits (200), Expect(3) = e-176
 Identities = 34/56 (60%), Positives = 42/56 (75%)
 Frame = -3

Query: 1610 DEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKWIYKIK 1443
            D+P T++ A+   D EKW +AMK E+ESMY N VW LVDLP+G +PI CKWIYK K
Sbjct: 143  DDPLTFKMAMDDVDREKWQEAMKLEIESMYSNSVWKLVDLPEGIKPIGCKWIYKXK 198


>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score =  467 bits (1202), Expect(3) = e-174
 Identities = 225/372 (60%), Positives = 288/372 (77%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            +SIYGLKQASRSWN  FD+ IK+FGF +  DE CVYKK +G KVVFLVLYVDDIL+IGN 
Sbjct: 257  RSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFLVLYVDDILLIGNC 316

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            I ML SVK WL + F MKDLGEA +ILGIK+ R+R K+MIGLSQ  YID +L+RFNM+ S
Sbjct: 317  IGMLTSVKDWLSQRFDMKDLGEAAHILGIKLMRNRKKKMIGLSQALYIDTILNRFNMQGS 376

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLP  HGI LSK QSP+T +E+E M  +P+ASA+GS+MYAM+CTRPD+  A+ M SR
Sbjct: 377  KKGFLPFRHGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDICFAVGMVSR 436

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            +Q+  G  HW A K+I+KYL RT++  LV+  +  L  IGYTD+ FQ+D+D  +S SG V
Sbjct: 437  FQSNXGREHWXAVKHIIKYLKRTRDYMLVFQSE-NLXPIGYTDSDFQSDQDSRKSTSGNV 495

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F L GGA+SWRS KQ  +ADST EAEY+  SEAAKEAVW++ F+ +LGVVPS+ SP+ L+
Sbjct: 496  FXLGGGAISWRSIKQTXVADSTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQSPITLY 555

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GA+A +KEPR HKR+KH++RKYH +R+ V  GD +V KI +++N+ADP TKSLS  
Sbjct: 556  CDNSGAVANSKEPRSHKRAKHIERKYHLIRDIVQRGDXVVMKIASENNLADPFTKSLSSX 615

Query: 85   KHEKYLVEMGIK 50
              E+++  MG+K
Sbjct: 616  TFERHVEGMGVK 627



 Score =  119 bits (298), Expect(3) = e-174
 Identities = 60/93 (64%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            G    +KA LVA+GY Q  GIDY+ETFSPVAMLKSIRILL+IA+Y+DYEIWQMDVKTAFL
Sbjct: 168  GKXZTYKAXLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFL 227

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG L+  +YM Q EGF+       +CKL +S+Y
Sbjct: 228  NGSLDECIYMKQXEGFIXNGQEHLLCKLNRSIY 260



 Score = 76.6 bits (187), Expect(3) = e-174
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
 Frame = -3

Query: 1817 HLEEIQDGQPQITSEVVASPVRAQEIEQVSTTDVVVXXXXXXXXXXXXXXXXSEGYLVYD 1638
            H++E+QD  P + +     P   Q+ E V+   VV+                 E +    
Sbjct: 47   HIDEVQDVVPPVINLXALQP---QQBEGVAXQPVVLRRSGRTRRPPVRYTXLGEAF---- 99

Query: 1637 GYEIFLLDR------DEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGAR 1476
                   DR       EP  Y  A+   D++KW  AMKSEMESMY N+VW LV+ P G +
Sbjct: 100  -------DRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEMESMYSNQVWELVEPPKGVK 152

Query: 1475 PIECKWIYKIKTDME 1431
            PI CKWIYK K  ++
Sbjct: 153  PIGCKWIYKKKRGID 167


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  446 bits (1148), Expect(3) = e-172
 Identities = 213/340 (62%), Positives = 265/340 (77%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFD  IKS+GF +N DEPCVYKK+  S V FL+LYVDDIL+IGND
Sbjct: 952  KSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGND 1011

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            +  L  VK WL   F MKDLGEAQYILGI+I R+R  + + +SQ +YIDKVLSR+ M+NS
Sbjct: 1012 VEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNS 1071

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKG LP  HGI LSK+Q P+T  E+E M  IP++SA+GS+MYAM+CTRPD+  ++ + SR
Sbjct: 1072 KKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSR 1131

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PG  HWTA KNILKYL RT+N  LVYG + +L + GYTD+ FQ+DKD  +S SG V
Sbjct: 1132 YQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAK-DLILTGYTDSDFQSDKDARKSTSGSV 1190

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            FTLNGGAV WRS KQ  IADST EAEY+   EAAKEAVW++KF+++L VVP++  P+ L+
Sbjct: 1191 FTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLY 1250

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIV 146
            CD+ GA+A +KEPR HKR KH++RKYH +RE V  GD++V
Sbjct: 1251 CDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRGDVVV 1290



 Score =  134 bits (336), Expect(3) = e-172
 Identities = 65/93 (69%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            G +   KARLVA+GY Q  G+DY+ETFSPVAMLKSIRILL+IA++Y+YEIWQMDVKTAFL
Sbjct: 863  GKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFL 922

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+LE  +YM QPEGF+  D   KVCKL KS+Y
Sbjct: 923  NGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIY 955



 Score = 76.3 bits (186), Expect(3) = e-172
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = -3

Query: 1610 DEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKWIYKIKTD 1437
            ++P TY+ A+   D ++W KAM  EMESMY N VW LVDLP   +PI CKWIYK K D
Sbjct: 803  EDPLTYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRD 860


>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 649

 Score =  446 bits (1147), Expect(3) = e-166
 Identities = 234/377 (62%), Positives = 269/377 (71%), Gaps = 3/377 (0%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSW   FDEV+K  GF++N +EPCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 319  KSIYGLKQASRSWKICFDEVVKVLGFVKNEEEPCVYKKISGSTLVFLILYVDDILLIGND 378

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESVK  L  +FSMKDLGEA YILGI+IYRDRSKR+IGLSQ+TYIDKVL RFNM++S
Sbjct: 379  IPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDS 438

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L K Q PQT+DE  KMS IP+ASAIGSI+Y M+CTRPDVS ALS TSR
Sbjct: 439  KKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIVYGMLCTRPDVSYALSATSR 498

Query: 625  YQA---CPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQS 455
            YQ     PGE HW   KNILKYL RTK+ FLVYGGQ E+ V GYTDASFQTDKDDFR Q 
Sbjct: 499  YQGYVPSPGESHWIVVKNILKYLRRTKDMFLVYGGQEEIVVNGYTDASFQTDKDDFRLQF 558

Query: 454  GYVFTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPV 275
            G+VF LNGGA                                                P+
Sbjct: 559  GFVFCLNGGA------------------------------------------------PM 570

Query: 274  KLFCDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSL 95
             L+CD+ GAIAQAKEPR H++SKH+  +YH +RE V  GD+ + KI+TD NVADPL K L
Sbjct: 571  DLYCDNIGAIAQAKEPRSHQKSKHILLRYHLIREIVGRGDVKICKINTDLNVADPLRKPL 630

Query: 94   SQQKHEKYLVEMGIKPI 44
             Q KHE +   MGI+ I
Sbjct: 631  PQPKHEAHTRAMGIRYI 647



 Score =  100 bits (248), Expect(3) = e-166
 Identities = 43/67 (64%), Positives = 54/67 (80%)
 Frame = -3

Query: 1631 EIFLLDRDEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKWIY 1452
            +I LLD DEPTTY  A+  PDSEKW +AMKSE+E M+ N+VWNLVD PDG + IECKW++
Sbjct: 189  DILLLDNDEPTTYEEAMVGPDSEKWLEAMKSEIEFMHVNQVWNLVDPPDGVKAIECKWVF 248

Query: 1451 KIKTDME 1431
            K KTD++
Sbjct: 249  KKKTDVD 255



 Score = 89.4 bits (220), Expect(3) = e-166
 Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ +HKARLV                          I+LAIA+Y++Y+IWQMDVKTAFL
Sbjct: 256  GNVHIHKARLV--------------------------IVLAIATYFNYKIWQMDVKTAFL 289

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L+ DVYMTQP+GFVDP    ++CKL KS+Y
Sbjct: 290  NGNLDEDVYMTQPKGFVDPQSAKRICKLQKSIY 322


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  577 bits (1487), Expect = e-162
 Identities = 284/388 (73%), Positives = 326/388 (84%)
 Frame = -1

Query: 1213 RGFCGSRLPLEGMQA*KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKV 1034
            +GF     P +  +  KSIYGLKQASRSWN RFDEVIK FGF++N +E CVYKKVSGS +
Sbjct: 926  QGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAI 985

Query: 1033 VFLVLYVDDILIIGNDIPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQ 854
            VFL+LYVDDIL+IGNDIPMLESVK+ L  +FSMKDLGEA YILGI+IYRDRSKR+IGLSQ
Sbjct: 986  VFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQ 1045

Query: 853  NTYIDKVLSRFNMKNSKKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAM 674
            +TYIDKVL RFNM +SKKGFLPMSHGI+LSK Q PQT DE  KM  +P+ASAIGSIMYAM
Sbjct: 1046 STYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAM 1105

Query: 673  ICTRPDVSCALSMTSRYQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDA 494
            +CTRPDVS ALS TSRYQ+ PGE HWTA KNILKYL RTK+ FLVYGG+ +L V GYTDA
Sbjct: 1106 LCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDA 1165

Query: 493  SFQTDKDDFRSQSGYVFTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFV 314
            SFQTDKDD+RSQSG+VF LNGGAVSW+SSKQDT+ADST EAEYI  SEAAKEAVWIKKFV
Sbjct: 1166 SFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFV 1225

Query: 313  SELGVVPSITSPVKLFCDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIH 134
            SELGV+ S T P+ L+CD+ GAIAQAKEPR H++SKH+ R+YH +RE VD GD+ + K+H
Sbjct: 1226 SELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVH 1285

Query: 133  TDDNVADPLTKSLSQQKHEKYLVEMGIK 50
            TD N+ADPLTK L Q KHE +   MGI+
Sbjct: 1286 TDLNIADPLTKPLPQPKHEAHTRAMGIR 1313



 Score =  153 bits (387), Expect(2) = 2e-64
 Identities = 71/93 (76%), Positives = 85/93 (91%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G+KQI G+DYDETFSPVAMLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 853  GNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFL 912

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L  DVYM QP+GFVDP+ P K+CKL KS+Y
Sbjct: 913  NGNLSEDVYMIQPQGFVDPESPGKICKLQKSIY 945



 Score =  121 bits (304), Expect(2) = 2e-64
 Identities = 66/149 (44%), Positives = 87/149 (58%)
 Frame = -3

Query: 1877 RGGVFLERECLSQKTSGRNIHLEEIQDGQPQITSEVVASPVRAQEIEQVSTTDVVVXXXX 1698
            R GVFLE+E LS++ SG  +HLEE+Q+     T E V++    Q+ +Q     VV     
Sbjct: 712  RHGVFLEKEFLSRRVSGIRVHLEEVQE-----TPETVSATTEPQQEDQSVAPPVV---DT 763

Query: 1697 XXXXXXXXXXXXSEGYLVYDGYEIFLLDRDEPTTYRAAITSPDSEKWHKAMKSEMESMYE 1518
                         + Y   +  +I LLD DEP TY  A+   DS KW  AMKSE+ESMY+
Sbjct: 764  PAPRRSERSRRAPDRYTGAEQRDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYD 823

Query: 1517 NEVWNLVDLPDGARPIECKWIYKIKTDME 1431
            N+VWNLVD PDG + IECKW++K K DM+
Sbjct: 824  NQVWNLVDPPDGVKTIECKWLFKKKADMD 852


>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
            italica]
          Length = 1686

 Score =  371 bits (953), Expect(3) = e-160
 Identities = 195/344 (56%), Positives = 236/344 (68%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            +SIYGLKQASRSWN RFDEV+K F F +N +E CVYKKVSGS VVFL+LYVDDIL+IGN+
Sbjct: 353  RSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNN 412

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            I MLESVK  L  +FSM DLGEA YILGIKIYRDRS+R+IGLSQ+TYIDKVL RF+M+ +
Sbjct: 413  ILMLESVKTSLKNSFSMMDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEA 472

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHG  LSK Q P T+DE ++MS++P+ASAIGSIMYAMI TRPD          
Sbjct: 473  KKGFLPMSHGRHLSKTQCPLTADERDRMSRVPYASAIGSIMYAMISTRPD---------- 522

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
                                               L V GYTDASFQTD+DD +SQSG+V
Sbjct: 523  -----------------------------------LVVTGYTDASFQTDRDDSKSQSGFV 547

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            FTLNGGAVSW+SSKQ+T+ADST EAEYI  SEAAKE VWI+ F+ ELGV P+ +SP+ L+
Sbjct: 548  FTLNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFLIELGVFPNASSPLNLY 607

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIH 134
            CD+ G   +  +P+    S       H++        + +  +H
Sbjct: 608  CDNNG---KRNDPKSFGNSPSSPMDRHWMYNADRRSKVFIDGLH 648



 Score =  145 bits (366), Expect(3) = e-160
 Identities = 68/93 (73%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G++Q+ G+DYDETFSPV MLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 264  GNVHIYKARLVAKGFRQVQGVDYDETFSPVVMLKSIRIILAIAAYFDYEIWQMDVKTAFL 323

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L  DVYM QPEGFVDP    KVCKL +S+Y
Sbjct: 324  NGNLAKDVYMIQPEGFVDPKNAGKVCKLQRSIY 356



 Score = 99.8 bits (247), Expect(3) = e-160
 Identities = 44/67 (65%), Positives = 52/67 (77%)
 Frame = -3

Query: 1631 EIFLLDRDEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKWIY 1452
            EI LLD DEP TY  A+  PDS+KW  AM+SE+ESM +N+VWNLVD PDG + IECKWIY
Sbjct: 197  EILLLDNDEPVTYAEAMMDPDSDKWQSAMQSEIESMGDNQVWNLVDPPDGVKAIECKWIY 256

Query: 1451 KIKTDME 1431
            K K DM+
Sbjct: 257  KKKKDMD 263


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  424 bits (1090), Expect(3) = e-155
 Identities = 211/278 (75%), Positives = 239/278 (85%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFDEV+K+ GF++N + PCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 865  KSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGND 924

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESV   L  +FSMKDLGEA YILGI+IYRD SKR+IGLS++TYIDKVL  FNM++S
Sbjct: 925  IPMLESVNISLKNSFSMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDS 984

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L+K Q  QT++E  KMS IP+ASAIGSIMYAM+CTRPDVS  LS TSR
Sbjct: 985  KKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASAIGSIMYAMLCTRPDVSYVLSATSR 1044

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ P E HW A KNILKYL RTK+ FLVYGGQ EL V GYTDASFQTDKDDFRSQSG+V
Sbjct: 1045 YQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYTDASFQTDKDDFRSQSGFV 1104

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAV 332
            F LNG AVSW+SSKQDT A+ST EAEYI  S+AAKEAV
Sbjct: 1105 FCLNGSAVSWKSSKQDTAANSTTEAEYIAASKAAKEAV 1142



 Score =  148 bits (373), Expect(3) = e-155
 Identities = 69/93 (74%), Positives = 84/93 (90%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G++QI G+DYDETF PVAMLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 776  GNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFL 835

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L+ DVYMTQP+GFVDP    K+CKL KS+Y
Sbjct: 836  NGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIY 868



 Score = 28.5 bits (62), Expect(3) = e-155
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 1478 RPIECKWIYKIKTDME 1431
            R IECKW +K KTD++
Sbjct: 760  RAIECKWFFKKKTDVD 775


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  424 bits (1090), Expect(3) = e-155
 Identities = 211/278 (75%), Positives = 239/278 (85%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASRSWN RFDEV+K+ GF++N + PCVYKK+SGS +VFL+LYVDDIL+IGND
Sbjct: 807  KSIYGLKQASRSWNIRFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGND 866

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            IPMLESV   L  +FSMKDLGEA YILGI+IYRD SKR+IGLS++TYIDKVL  FNM++S
Sbjct: 867  IPMLESVNISLKNSFSMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDS 926

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLPMSHGI+L+K Q  QT++E  KMS IP+ASAIGSIMYAM+CTRPDVS  LS TSR
Sbjct: 927  KKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASAIGSIMYAMLCTRPDVSYVLSATSR 986

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ P E HW A KNILKYL RTK+ FLVYGGQ EL V GYTDASFQTDKDDFRSQSG+V
Sbjct: 987  YQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQEELVVNGYTDASFQTDKDDFRSQSGFV 1046

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAV 332
            F LNG AVSW+SSKQDT A+ST EAEYI  S+AAKEAV
Sbjct: 1047 FCLNGSAVSWKSSKQDTAANSTTEAEYIAASKAAKEAV 1084



 Score =  148 bits (373), Expect(3) = e-155
 Identities = 69/93 (74%), Positives = 84/93 (90%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+ ++KARLVA+G++QI G+DYDETF PVAMLKSIRI+LAIA+Y+DYEIWQMDVKTAFL
Sbjct: 718  GNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFL 777

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG+L+ DVYMTQP+GFVDP    K+CKL KS+Y
Sbjct: 778  NGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIY 810



 Score = 28.5 bits (62), Expect(3) = e-155
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 1478 RPIECKWIYKIKTDME 1431
            R IECKW +K KTD++
Sbjct: 702  RAIECKWFFKKKTDVD 717


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  416 bits (1069), Expect(3) = e-152
 Identities = 206/372 (55%), Positives = 266/372 (71%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            +SIYGLKQASRSWN  FD+ IK+FGF +  D  CVYKK +G KVVFL             
Sbjct: 935  RSIYGLKQASRSWNTCFDQTIKTFGFDQCHDVSCVYKKWNGKKVVFL------------- 981

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
                          F MK LGEA +ILGIK+ R+R KRMIGLSQ  YID +L+RFNM+ S
Sbjct: 982  -------------RFDMKYLGEAAHILGIKLMRNRKKRMIGLSQALYIDTILNRFNMQGS 1028

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            KKGFLP  HGI LSK QSP+T +E+E M  +P+ASA+GS+MYAM+CTRPD+  A+ M SR
Sbjct: 1029 KKGFLPFRHGIVLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDIYFAVGMVSR 1088

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            +Q+ PG  HWTA K+I+KYL RT++  LV+  +  L  IGYTD+ FQ+D+D  +S SG V
Sbjct: 1089 FQSNPGREHWTAVKHIIKYLKRTRDYMLVFQSE-NLVPIGYTDSDFQSDQDSRKSTSGNV 1147

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F L GGA+SWRS KQ  +AD T EAEY+  SEAAKEAVW++ F+ +LGVVPS+ SP+ L+
Sbjct: 1148 FVLGGGAISWRSIKQTCVADFTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQSPITLY 1207

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+ GA+A +KEPR HKR+KH+ RKYH +R+ V  GD++V KI +++N+ADP TKSLS  
Sbjct: 1208 CDNSGAVANSKEPRSHKRAKHIXRKYHLIRDIVQRGDVVVMKIASENNLADPFTKSLSST 1267

Query: 85   KHEKYLVEMGIK 50
              E+++  MG+K
Sbjct: 1268 TFERHVEGMGVK 1279



 Score =  121 bits (303), Expect(3) = e-152
 Identities = 60/93 (64%), Positives = 74/93 (79%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            G +  +KA+LVA+GY Q  GIDY+ETFSPVAMLKSIRILL+IA+Y+DYEIWQMDVKTAFL
Sbjct: 846  GKVQTYKAKLVAKGYTQKEGIDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFL 905

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG L+  +YM Q EGF+       +CKL +S+Y
Sbjct: 906  NGSLDECIYMKQLEGFITNGQEHLLCKLNRSIY 938



 Score = 52.0 bits (123), Expect(3) = e-152
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = -3

Query: 1535 MESMYENEVWNLVDLPDGARPIECKWIYKIKTDME 1431
            MESMY N+VW LV+ P G +PI CKWIYK K  ++
Sbjct: 811  MESMYSNQVWELVEPPKGVKPIGCKWIYKKKRGID 845


>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
          Length = 1321

 Score =  371 bits (952), Expect(3) = e-140
 Identities = 179/371 (48%), Positives = 246/371 (66%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASR W  +F  +I SFGF  NP + C+Y KVSGSK+ FLVLYVDDIL+  ND
Sbjct: 947  KSIYGLKQASRQWYLKFHGIISSFGFDENPMDQCIYHKVSGSKICFLVLYVDDILLAAND 1006

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
              +L  VK +L KNF MKD+G+A Y++GIKI+RDRS+ ++GLSQ TYI+K+L RF MK+ 
Sbjct: 1007 RGLLHEVKQFLSKNFDMKDMGDASYVIGIKIHRDRSRGILGLSQETYINKILERFRMKDC 1066

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
                 P+  G   +  Q P+   E E+M  IP+AS +GS+MYA +CTRPD++ A+ M  R
Sbjct: 1067 SPSVAPIVKGDRFNLNQCPKNDFEREQMKNIPYASVVGSLMYAQVCTRPDIAFAVGMLGR 1126

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            YQ+ PG  HW AAK +L+YL  TK+  L+Y     L  IGY+D+ F    D  RS SGY+
Sbjct: 1127 YQSNPGIDHWRAAKKVLRYLQGTKDYMLMYRQTDNLDAIGYSDSDFAGCVDSRRSTSGYI 1186

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            F + GGA+SW S KQ   A ST EAE++   EA    VW+K F+S L ++ +I+ P+++F
Sbjct: 1187 FMMAGGAISWGSVKQSLAATSTMEAEFVSCFEATSHGVWLKSFISGLKIIDTISRPLRIF 1246

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD+  A+  AK  +   RSKH+  KY  +RERV D  ++++ I T+  +ADPLTK +   
Sbjct: 1247 CDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKVVIEHISTELMIADPLTKGMPPF 1306

Query: 85   KHEKYLVEMGI 53
            K + ++  MG+
Sbjct: 1307 KFKDHVERMGL 1317



 Score =  108 bits (269), Expect(3) = e-140
 Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GNI  +KARLVA+G+ Q  GIDY ETFSPV+   S+RI+LA+ +++D E+ QMDVKTAFL
Sbjct: 858  GNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFL 917

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG LE +VYM QPEGF        VCKL KS+Y
Sbjct: 918  NGDLEEEVYMKQPEGFSSNSGEHLVCKLNKSIY 950



 Score = 71.6 bits (174), Expect(3) = e-140
 Identities = 29/58 (50%), Positives = 42/58 (72%)
 Frame = -3

Query: 1610 DEPTTYRAAITSPDSEKWHKAMKSEMESMYENEVWNLVDLPDGARPIECKWIYKIKTD 1437
            ++P T+  A++  +S  W+ AMK EM SM  N+VWNLV+LP+GA+ I CKW++K K D
Sbjct: 798  NDPETFDQAMSCKESNLWYDAMKDEMSSMQSNKVWNLVELPNGAKAIGCKWVFKTKKD 855


>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
          Length = 1356

 Score =  371 bits (953), Expect(3) = e-140
 Identities = 177/371 (47%), Positives = 253/371 (68%)
 Frame = -1

Query: 1165 KSIYGLKQASRSWNFRFDEVIKSFGFLRNPDEPCVYKKVSGSKVVFLVLYVDDILIIGND 986
            KSIYGLKQASR W F+F ++I S+GF  N  + CVY K SGSK +FLVLYVDDIL+  ND
Sbjct: 978  KSIYGLKQASRQWYFKFHQIIVSYGFEANLMDECVYHKFSGSKYIFLVLYVDDILLATND 1037

Query: 985  IPMLESVKAWLGKNFSMKDLGEAQYILGIKIYRDRSKRMIGLSQNTYIDKVLSRFNMKNS 806
            I +L   K +L K+F MKDLG+A ++LGI+I+RDRS+ ++GLSQ TYIDKVL R+ M+NS
Sbjct: 1038 ISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNS 1097

Query: 805  KKGFLPMSHGISLSKKQSPQTSDELEKMSKIPFASAIGSIMYAMICTRPDVSCALSMTSR 626
            K G  P++ G   S  Q P+ S E ++M KIP+ASA+GS+MYA +CTRPD++  + M  R
Sbjct: 1098 KPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGR 1157

Query: 625  YQACPGEVHWTAAKNILKYLNRTKNRFLVYGGQTELSVIGYTDASFQTDKDDFRSQSGYV 446
            Y + PG  HW AAK +++YL RTK   L Y    +L +IGY+D+ F   +D  RS SGY+
Sbjct: 1158 YLSNPGMDHWKAAKRVMRYLQRTKEYMLTYRRLDQLELIGYSDSDFAGCQDSRRSTSGYI 1217

Query: 445  FTLNGGAVSWRSSKQDTIADSTAEAEYIVGSEAAKEAVWIKKFVSELGVVPSITSPVKLF 266
            + L GGA+SWRS+KQ  +  ST EAE++   EA+ + +W++ FV+ L V+  I  P+K+F
Sbjct: 1218 YLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKIF 1277

Query: 265  CDSEGAIAQAKEPRDHKRSKHVKRKYHFLRERVDDGDIIVKKIHTDDNVADPLTKSLSQQ 86
            CD++ A+  +   R   +SK++  K+  ++E+V  G I ++ I T+  +ADPLTK L  +
Sbjct: 1278 CDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLPPK 1337

Query: 85   KHEKYLVEMGI 53
               ++   MG+
Sbjct: 1338 VFHEHTAHMGV 1348



 Score =  106 bits (264), Expect(3) = e-140
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = -2

Query: 1431 GNIIVHKARLVARGYKQIHGIDYDETFSPVAMLKSIRILLAIASYYDYEIWQMDVKTAFL 1252
            GN+  +KARLVA+G+ Q  GID+ ETFSPV+   S RI++A+ ++YD E+ QMDVKTAFL
Sbjct: 889  GNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAFL 948

Query: 1251 NGHLENDVYMTQPEGFVDPDCPWKVCKL-KSLY 1156
            NG ++  +YM QPE FV  D    VCKL KS+Y
Sbjct: 949  NGDIDETIYMVQPENFVSEDSKNMVCKLTKSIY 981



 Score = 72.8 bits (177), Expect(3) = e-140
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
 Frame = -3

Query: 1874 GGVFLERECLSQKTSGRNIHLEEIQDGQPQITSEVVASPVRAQEIEQ--VSTTDVVVXXX 1701
            GG    R  + ++  G  I  + +Q   P I  EV   P     I Q  ++  D+     
Sbjct: 729  GGRNQARNIVFEEEEGSTIAFDNVQVSLPIIDQEVNLDPQPTDNIVQPLIANEDIAPEEQ 788

Query: 1700 XXXXXXXXXXXXXSEGY--LVYDGYEIFLLDR--------DEPTTYRAAITSPDSEKWHK 1551
                         +      + D Y ++L +R        D+P  ++ A+ S +S KW +
Sbjct: 789  TQQPQENMPLRRSTRERRNAISDDYIVYLQEREVESGMMEDDPINFQQAMKSSNSHKWIE 848

Query: 1550 AMKSEMESMYENEVWNLVDLPDGARPIECKWIYKIKTD 1437
            AM  E +SM +N+VW LV LP G +PI CKWI+K K D
Sbjct: 849  AMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRD 886