BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00024199
         (853 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   352   1e-94
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 330   5e-88
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   323   4e-86
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   323   4e-86
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   323   5e-86
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   323   6e-86
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   322   1e-85
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   321   2e-85
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   320   3e-85
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   299   1e-78
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   223   9e-56
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   169   9e-40
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             141   3e-31
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   141   3e-31
gb|AFM77886.1| replicase [Hosta virus X]                              134   5e-29
ref|NP_148778.1| RNA-dependent RNA polymerase [Cactus virus X] g...   133   9e-29
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   130   5e-28
ref|YP_002341559.1| replication-associated protein [Schlumberger...   130   6e-28
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   128   2e-27
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   127   4e-27

>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  352 bits (903), Expect = 1e-94
 Identities = 177/284 (62%), Positives = 209/284 (73%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T +RGPPGF NPFT+P PVNP+DAD    F++FS  + ++   T+   LE SAE+   HT
Sbjct: 408  TTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHT 467

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
             LKV  + LS  QL A+H LG++R GGPLLP++T +    E           ++AS A +
Sbjct: 468  QLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASS 527

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                 D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATL
Sbjct: 528  NPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATL 587

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
            P HW    L ++L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQ
Sbjct: 588  PAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQ 647

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLT+N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVL
Sbjct: 648  TMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVL 691


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  330 bits (845), Expect = 5e-88
 Identities = 173/284 (60%), Positives = 198/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            TRLRGPPGF +PFT+P PVNPDDA+T  +FREF      S   T+ + LE S E+  +HT
Sbjct: 410  TRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHT 469

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SLKV    LS EQL ALHELGN+R GGP+LPK +                  T  S+ L 
Sbjct: 470  SLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSDLL 514

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
            +  H    P        P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A +
Sbjct: 515  RRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIM 570

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
            P HW+ P   K++ TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQ
Sbjct: 571  PAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQ 630

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLTDN   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL
Sbjct: 631  TMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 674


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  323 bits (829), Expect = 4e-86
 Identities = 171/284 (60%), Positives = 198/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +    L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  323 bits (829), Expect = 4e-86
 Identities = 171/284 (60%), Positives = 198/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +    L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  323 bits (828), Expect = 5e-86
 Identities = 170/284 (59%), Positives = 198/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +  + L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  323 bits (827), Expect = 6e-86
 Identities = 170/284 (59%), Positives = 198/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +  + L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  322 bits (825), Expect = 1e-85
 Identities = 170/284 (59%), Positives = 198/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +    L   QL ALHELGN R GGPLLPK  P +  R                    
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P ++++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
             MLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 643  AMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  321 bits (822), Expect = 2e-85
 Identities = 170/288 (59%), Positives = 199/288 (69%), Gaps = 4/288 (1%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   + T+       +LE  AE    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXXTKAS 348
            SL +    L   QL ALHELGNTR GGPLLPK    +T  E   +            + +
Sbjct: 465  SLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKT 524

Query: 349  AALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLP 528
                    T  +P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP
Sbjct: 525  T------QTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELP 578

Query: 529  KATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTW 708
            +A    HW  P + ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q W
Sbjct: 579  RAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVW 638

Query: 709  KETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            KETQTML +N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 639  KETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  320 bits (821), Expect = 3e-85
 Identities = 169/284 (59%), Positives = 197/284 (69%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRG PGF +PF +P PVNPDDA+T ++F+ F   +      T+  +L   +E    H 
Sbjct: 410  THLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL +  + L   QL ALHELGN R G PLLPK  P +  R                    
Sbjct: 465  SLSLKCSTLPEHQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHK 523

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A  
Sbjct: 524  TTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
              HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  HAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            TMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVL
Sbjct: 643  TMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVL 686


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  299 bits (765), Expect = 1e-78
 Identities = 153/267 (57%), Positives = 181/267 (67%)
 Frame = +1

Query: 1    TRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHT 180
            T LRGPPGF +PFT+P PVNPDDA+T  +F+ F   +       +  +LE  AE    H 
Sbjct: 410  TLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETTLEQQAETPDEHQ 464

Query: 181  SLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALN 360
            SL++    LS  QL ALH+LGN R GGPLLP+        E               +  N
Sbjct: 465  SLRLDCPTLSEHQLWALHKLGNARCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRN 524

Query: 361  QGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATL 540
                   +P   DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  
Sbjct: 525  T--QAPNLPSPQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIG 582

Query: 541  PEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQ 720
            P HW  P + ++++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQ
Sbjct: 583  PAHWQGPDMEQIISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQ 642

Query: 721  TMLTDNVTANLAISVIHGAGGSGKSQA 801
            TMLT++   NLAISVIHGAGGSGKSQA
Sbjct: 643  TMLTESTQTNLAISVIHGAGGSGKSQA 669


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  223 bits (567), Expect = 9e-56
 Identities = 136/291 (46%), Positives = 166/291 (57%), Gaps = 10/291 (3%)
 Frame = +1

Query: 10   RGPPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLK 189
            R PPGF +P  +P PVN  DA T  A                            ++ SL 
Sbjct: 412  RTPPGFRHPLCRPLPVNEVDALTTAA---------------------------CANQSLP 444

Query: 190  VGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGD 369
            + +  LS +QL ALH LG+ R  G  LP  +P +   E           T ++A   +  
Sbjct: 445  LDN--LSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTV 496

Query: 370  HTDQVPVNS---------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRD 522
             T  V V++         DP TLPW AWLP L ALGFEA EIQTDP     IMPITD++ 
Sbjct: 497  PTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQT 556

Query: 523  LPKATLPEHWNEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRET 699
            LP  T  E+ +      KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+
Sbjct: 557  LPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKES 616

Query: 700  QTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            Q WKETQT LT+     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVL
Sbjct: 617  QNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVL 667


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  169 bits (429), Expect = 9e-40
 Identities = 91/201 (45%), Positives = 122/201 (60%), Gaps = 4/201 (1%)
 Frame = +1

Query: 262  PLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV----NSDPATLPWVAWL 429
            P LP ++PE + R               +      ++T+ V      N+  A LPW  W+
Sbjct: 566  PTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWM 624

Query: 430  PKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFP 609
            PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L++L+R P
Sbjct: 625  PKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMP 680

Query: 610  TSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSG 789
            T W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  D+    + +SVIHGAGGSG
Sbjct: 681  TLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSG 740

Query: 790  KSQALQTLLRQNPDLPIEVVL 852
            KS ALQ LLR +P+LPI+V+L
Sbjct: 741  KSAALQDLLRDHPELPIQVIL 761


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  141 bits (356), Expect = 3e-31
 Identities = 76/157 (48%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
 Frame = +1

Query: 385 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 561
           PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543 PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 562 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 741
               V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599 --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 742 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
              + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVL
Sbjct: 657 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVL 693


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus]
           gi|56792005|gb|AAW30448.1| viral replicase [Hydrangea
           ringspot virus]
          Length = 1386

 Score =  141 bits (356), Expect = 3e-31
 Identities = 76/157 (48%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
 Frame = +1

Query: 385 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 561
           PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543 PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 562 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 741
               V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599 --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 742 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
              + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVL
Sbjct: 657 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVL 693


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  134 bits (336), Expect = 5e-29
 Identities = 78/171 (45%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
 Frame = +1

Query: 337  TKASAALNQG-----DHT-DQVPVNSDPA--TLPWVAWLPKLNALGFEALEIQTDPSTGE 492
            ++AS+A  +G     D T +Q P +  P    LPW  WL +L A+GF+  E Q D   G 
Sbjct: 591  SQASSATTRGRDPVIDRTREQAPTSITPEEEALPWKHWLKQLKAVGFKGNETQMD-GDGT 649

Query: 493  VIMPITDVRDLPKATLPEHWNEPGLSK-VLTTLRSLNRFPTSWCPDRARARAFTSDVKNS 669
             I PI  ++ +P +      N   +SK +L TLRS+ R PTSW PD +RARA+TSD+KN 
Sbjct: 650  TISPIEQIKSMPVS------NPSSVSKEILETLRSVARAPTSWKPDASRARAYTSDIKNR 703

Query: 670  RTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQ 822
            RTG A+H   Q WKET   + +N    L ISVIHGAGGSGKS+ LQ +L +
Sbjct: 704  RTGAAVHMAPQAWKETMDFIAENAERTLHISVIHGAGGSGKSRCLQEMLNK 754


>ref|NP_148778.1| RNA-dependent RNA polymerase [Cactus virus X]
            gi|14582654|gb|AAK69579.1|AF308158_1 RNA-dependent RNA
            polymerase [Cactus virus X]
          Length = 1543

 Score =  133 bits (334), Expect = 9e-29
 Identities = 83/225 (36%), Positives = 122/225 (54%)
 Frame = +1

Query: 178  TSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAAL 357
            T+L +GH +L T   ++  ++    L GP++   T     +E            + S   
Sbjct: 645  TTLSIGHCELLTRD-KSNKKIHKQLLSGPII--YTMPSGFQETHQHSVRSLQKNRLSITF 701

Query: 358  NQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKAT 537
                H +Q        TLPW  WLP L+A GF+  + Q +P+ G +I+PI+D++ LP   
Sbjct: 702  RTSVHCNQED------TLPWHKWLPILSAAGFKGNQRQVNPNGGSLILPISDIKKLPTIE 755

Query: 538  LPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 717
                  +PGL   L  ++ ++R PT +  D  RA+AF SDVKN R G  L  +++ W E+
Sbjct: 756  T----GDPGL---LEKIKKIHRSPTPFTYDPLRAKAFGSDVKNLRVGALLRHQSKEWLES 808

Query: 718  QTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
             +  T+  + +LA++VIHGAGGSGKSQALQ  LR NPD  I VVL
Sbjct: 809  FSRRTEKDSRSLALTVIHGAGGSGKSQALQDFLRANPDNRITVVL 853


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  130 bits (328), Expect = 5e-28
 Identities = 75/148 (50%), Positives = 94/148 (63%)
 Frame = +1

Query: 409  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 588
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 589  RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 768
              L R PT + P+  RARA+TSDVKN R G  L ++ + W      L +     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 769  HGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            HGAGGSGKSQALQTL++ NP+L I VVL
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVL 848


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  130 bits (327), Expect = 6e-28
 Identities = 81/225 (36%), Positives = 120/225 (53%)
 Frame = +1

Query: 178  TSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAAL 357
            T+L +GHA+L T+++ A  +L  T L G  +   T  +  +             + S   
Sbjct: 648  TTLNIGHAELRTKRI-ADGDLSFTSLTGVCV--YTMPQGFQSTHKHAVTSLEEGRISITF 704

Query: 358  NQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKAT 537
                H      +++ + LPW AWLP LN  GF+  + Q +P+ G +I PI D++ L K  
Sbjct: 705  RTSVH------HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTP 758

Query: 538  LPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 717
                 + PG+++VLT +   +R PT + PD  RA+AF SDVKN R G  L  +++ W E 
Sbjct: 759  A----SHPGINEVLTCI---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEA 811

Query: 718  QTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
             +  T+     + +SVIHG GGSGKS ALQ  LR NP+  I V+L
Sbjct: 812  FSRKTEMPPRTIGLSVIHGTGGSGKSHALQDFLRNNPEERITVIL 856


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  128 bits (322), Expect = 2e-27
 Identities = 73/152 (48%), Positives = 94/152 (61%)
 Frame = +1

Query: 397  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 576
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 577  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 756
            L    S  R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VL
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVL 842


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  127 bits (320), Expect = 4e-27
 Identities = 73/152 (48%), Positives = 94/152 (61%)
 Frame = +1

Query: 397  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 576
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 577  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 756
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 852
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VL
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVL 842