BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00022461
         (1391 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   430   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   354   e-159
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 509   e-141
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   506   e-140
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   506   e-140
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   506   e-140
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   506   e-140
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   504   e-140
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   503   e-140
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   502   e-139
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   501   e-139
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   317   e-138
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   320   e-138
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 318   e-137
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 318   e-137
gb|AFM77886.1| replicase [Hosta virus X]                              318   e-134
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   481   e-133
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   320   e-131
ref|YP_002341559.1| replication-associated protein [Schlumberger...   312   e-131
ref|YP_054407.1| replication-associated protein [Opuntia virus X...   307   e-129

>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  430 bits (1106), Expect(2) = 0.0
 Identities = 213/286 (74%), Positives = 238/286 (83%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+PG+HLLVPSL+KKAAF DAGH
Sbjct: 762  LCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGH 821

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLE
Sbjct: 822  KVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLE 881

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVRE K+EEF+A               PVE+ + TL   ++SL+DK++RE
Sbjct: 882  ATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKYDRE 941

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            I    HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKDLG
Sbjct: 942  ILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKDLG 1001

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            D+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKG
Sbjct: 1002 DVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKG 1047



 Score =  284 bits (727), Expect(2) = 0.0
 Identities = 133/174 (76%), Positives = 151/174 (86%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            KV+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE     
Sbjct: 574  KVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETR 633

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFER
Sbjct: 634  LGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFER 693

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 865
            AFV S +PVVIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTHHE+NE+A
Sbjct: 694  AFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQA 747


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  354 bits (908), Expect(2) = e-159
 Identities = 181/284 (63%), Positives = 214/284 (75%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++AGHK
Sbjct: 857  SRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHK 916

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
             STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEKLEA
Sbjct: 917  TSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEA 976

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYLKTFLS+VREDKI E+                 PVE+  T L++F E L+ K EREI
Sbjct: 977  TPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREI 1036

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            F E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GD
Sbjct: 1037 FNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGD 1096

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            ILW NY +AM LP++   F E+LW   A E+Q+TYL KS   +K
Sbjct: 1097 ILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLK 1139



 Score =  236 bits (602), Expect(2) = e-159
 Identities = 106/174 (60%), Positives = 141/174 (81%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L  L++L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  ++    
Sbjct: 668  ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728  VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 865
            A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A
Sbjct: 788  AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQA 841


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  509 bits (1311), Expect = e-141
 Identities = 250/286 (87%), Positives = 262/286 (91%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 769  LSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 828

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLE
Sbjct: 829  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLE 888

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEFSA               PVE+ TT LDDF+E L DKF+RE
Sbjct: 889  ATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDRE 948

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLG
Sbjct: 949  IFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLG 1008

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KG
Sbjct: 1009 DILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKG 1054



 Score =  328 bits (842), Expect = 3e-87
 Identities = 165/207 (79%), Positives = 178/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            K++ TLR+LNRFPTPW PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N   +
Sbjct: 581  KIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIH 640

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
             AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 641  TAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 700

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFV S+ PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEA      
Sbjct: 701  AFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEAL----I 756

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
            + + P  T  S  +S  YI  T   S+
Sbjct: 757  SKLSPATTTFS-ELSRYYINATHRNSK 782


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  506 bits (1302), Expect = e-140
 Identities = 251/286 (87%), Positives = 258/286 (90%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLG
Sbjct: 961  IFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKG
Sbjct: 1021 DILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKG 1066



 Score =  329 bits (843), Expect = 2e-87
 Identities = 166/207 (80%), Positives = 178/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   N
Sbjct: 593  RILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTN 652

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA      
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA-----L 767

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
             S  P AT     +S  YI  T   S+
Sbjct: 768  ISKLPPATAIFSELSRYYINATHRNSK 794


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  506 bits (1302), Expect = e-140
 Identities = 251/286 (87%), Positives = 258/286 (90%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLG
Sbjct: 961  IFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKG
Sbjct: 1021 DILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKG 1066



 Score =  327 bits (839), Expect = 6e-87
 Identities = 165/207 (79%), Positives = 177/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   N
Sbjct: 593  RILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTN 652

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA      
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA-----L 767

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
             S  P AT     +S  YI  T   S+
Sbjct: 768  ISKLPPATAIFSELSRYYINATHRNSK 794


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  506 bits (1302), Expect = e-140
 Identities = 251/286 (87%), Positives = 258/286 (90%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLG
Sbjct: 961  IFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKG
Sbjct: 1021 DILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKG 1066



 Score =  327 bits (839), Expect = 6e-87
 Identities = 165/207 (79%), Positives = 177/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   N
Sbjct: 593  RILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTN 652

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA      
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA-----L 767

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
             S  P AT     +S  YI  T   S+
Sbjct: 768  ISKLPPATAIFSELSRYYINATHRNSK 794


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  506 bits (1302), Expect = e-140
 Identities = 251/286 (87%), Positives = 258/286 (90%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLG
Sbjct: 961  IFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKG
Sbjct: 1021 DILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKG 1066



 Score =  327 bits (839), Expect = 6e-87
 Identities = 165/207 (79%), Positives = 177/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   N
Sbjct: 593  RILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTN 652

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA      
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA-----L 767

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
             S  P AT     +S  YI  T   S+
Sbjct: 768  ISKLPPATAIFSELSRYYINATHRNSK 794


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  504 bits (1298), Expect = e-140
 Identities = 250/286 (87%), Positives = 258/286 (90%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLG
Sbjct: 961  IFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKG
Sbjct: 1021 DILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKG 1066



 Score =  325 bits (832), Expect = 4e-86
 Identities = 164/208 (78%), Positives = 177/208 (85%)
 Frame = -3

Query: 1389 SKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTA 1210
            +++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN   
Sbjct: 592  ARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQT 651

Query: 1209 NLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE 1030
            NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFE
Sbjct: 652  NLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFE 711

Query: 1029 RAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPD 850
            RAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA     
Sbjct: 712  RAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA----- 766

Query: 849  TTSMRPTATRSSWPISWVYIRPTPAPSR 766
              S  P AT     +S  YI  T   S+
Sbjct: 767  LISKLPPATAIFSELSRYYINATHRNSK 794


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  503 bits (1296), Expect = e-140
 Identities = 250/286 (87%), Positives = 257/286 (89%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLG
Sbjct: 961  IFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKG
Sbjct: 1021 DILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKG 1066



 Score =  329 bits (843), Expect = 2e-87
 Identities = 166/207 (80%), Positives = 178/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   N
Sbjct: 593  RILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTN 652

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEA      
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEA-----L 767

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
             S  P AT     +S  YI  T   S+
Sbjct: 768  ISKLPPATAIFSELSRYYINATHRNSK 794


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  502 bits (1292), Expect = e-139
 Identities = 249/286 (87%), Positives = 256/286 (89%)
 Frame = -2

Query: 859  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
            LSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGH
Sbjct: 781  LSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGH 840

Query: 679  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
            KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE
Sbjct: 841  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 900

Query: 499  ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
            ATPYLKTFLSLVREDKIEEF+A               PVED TTTLDDFKE L DKF+RE
Sbjct: 901  ATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFDRE 960

Query: 319  IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
            IF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLG
Sbjct: 961  IFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLG 1020

Query: 139  DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            DILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKG
Sbjct: 1021 DILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKG 1066



 Score =  322 bits (826), Expect = 2e-85
 Identities = 161/207 (77%), Positives = 176/207 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++++TLRS NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN   N
Sbjct: 593  RIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTN 652

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 653  LAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 712

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEA      
Sbjct: 713  AFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEA-----L 767

Query: 846  TSMRPTATRSSWPISWVYIRPTPAPSR 766
             S  P AT     +S  YI  T   S+
Sbjct: 768  ISKLPPATAIFSELSRYYINATHRNSK 794


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  501 bits (1289), Expect = e-139
 Identities = 246/286 (86%), Positives = 259/286 (90%)
 Frame = -2

Query: 859 LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 680
           LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGH
Sbjct: 112 LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGH 171

Query: 679 KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 500
           KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLE
Sbjct: 172 KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLE 231

Query: 499 ATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFERE 320
           ATPYLKTFLSLVRED++ EFSA               PVED TTTLDDF+E L DKF+RE
Sbjct: 232 ATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDRE 291

Query: 319 IFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLG 140
           IF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLG
Sbjct: 292 IFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLG 351

Query: 139 DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
           DILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKG
Sbjct: 352 DILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKG 397



 Score =  196 bits (498), Expect = 2e-47
 Identities = 100/130 (76%), Positives = 106/130 (81%)
 Frame = -3

Query: 1155 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 976
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 975  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDTTSMRPTATRSSWPISWV 796
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEA       S  P AT     +S  
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEA-----LISKLPPATTIFSELSRY 115

Query: 795  YIRPTPAPSR 766
            YI  T   S+
Sbjct: 116  YINATHRNSK 125


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  317 bits (812), Expect(2) = e-138
 Identities = 158/284 (55%), Positives = 192/284 (67%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK AF++ GHK
Sbjct: 938  SRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHK 997

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
             STYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+
Sbjct: 998  ASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLES 1057

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYLK FLS +RED                      PV+      +D  + + +K EREI
Sbjct: 1058 TPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHEREI 1117

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            F+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  KK +GD
Sbjct: 1118 FSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKKPIGD 1177

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            +L+  Y +AM LP E   F   LW  C  E+Q TYL K I+ +K
Sbjct: 1178 VLFGFYREAMGLPTEPIAFEPQLWESCIHEIQRTYLAKPINMLK 1221



 Score =  202 bits (515), Expect(2) = e-138
 Identities = 101/175 (57%), Positives = 123/175 (70%)
 Frame = -3

Query: 1383 VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 1204
            +L  L S  R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    L
Sbjct: 750  LLKMLNSQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQL 809

Query: 1203 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 1024
            AISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A
Sbjct: 810  AISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKA 869

Query: 1023 FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXS 859
             +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE A S
Sbjct: 870  LLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMS 924


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  320 bits (819), Expect(2) = e-138
 Identities = 160/284 (56%), Positives = 194/284 (68%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK AF++ GHK
Sbjct: 938  SRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHK 997

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
            VSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN +  + AFW KLE+
Sbjct: 998  VSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNNQAFWAKLES 1057

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYLK FLS +RED                      PV+      +D  E + +K EREI
Sbjct: 1058 TPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDILEQMPEKHEREI 1117

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            F+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL +S P+AN +EF  KK +GD
Sbjct: 1118 FSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVLSNPKANWQEFMEKKPIGD 1177

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            +L+  Y +AM LP E   F   LW  C  EVQ TYL K I+ +K
Sbjct: 1178 VLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLK 1221



 Score =  199 bits (506), Expect(2) = e-138
 Identities = 99/175 (56%), Positives = 122/175 (69%)
 Frame = -3

Query: 1383 VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 1204
            +L  L    R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    L
Sbjct: 750  LLKMLDDQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQL 809

Query: 1203 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 1024
            AISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A
Sbjct: 810  AISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKA 869

Query: 1023 FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXS 859
             +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A S
Sbjct: 870  LLAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMS 924


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  318 bits (814), Expect(2) = e-137
 Identities = 159/284 (55%), Positives = 193/284 (67%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK AF++ GHK
Sbjct: 938  SRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHK 997

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
            VSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+
Sbjct: 998  VSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLES 1057

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYLK FLS +RED                      PV+      +D  + + +K EREI
Sbjct: 1058 TPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHEREI 1117

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            F+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ +GD
Sbjct: 1118 FSERHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRPIGD 1177

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            +L+  Y +AM LP E   F   LW  C  EVQ TYL K I+ +K
Sbjct: 1178 VLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLK 1221



 Score =  201 bits (510), Expect(2) = e-137
 Identities = 100/175 (57%), Positives = 123/175 (70%)
 Frame = -3

Query: 1383 VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 1204
            +L  L    R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    L
Sbjct: 750  LLKMLNDQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQL 809

Query: 1203 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 1024
            AISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A
Sbjct: 810  AISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKA 869

Query: 1023 FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXS 859
             +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE A S
Sbjct: 870  LLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMS 924


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  318 bits (814), Expect(2) = e-137
 Identities = 159/284 (55%), Positives = 193/284 (67%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK AF++ GHK
Sbjct: 938  SRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHK 997

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
            VSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+
Sbjct: 998  VSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLES 1057

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYLK FLS +RED                      PV+      +D  + + +K EREI
Sbjct: 1058 TPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMREKHEREI 1117

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            F+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ +GD
Sbjct: 1118 FSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRPIGD 1177

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            +L+  Y +AM LP E   F   LW  C  EVQ TYL K I+ +K
Sbjct: 1178 VLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLK 1221



 Score =  199 bits (507), Expect(2) = e-137
 Identities = 99/175 (56%), Positives = 123/175 (70%)
 Frame = -3

Query: 1383 VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 1204
            +L  L +  R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    L
Sbjct: 750  LLKMLDNQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQL 809

Query: 1203 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 1024
            AISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A
Sbjct: 810  AISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKA 869

Query: 1023 FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXS 859
             +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A S
Sbjct: 870  LLAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMS 924


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  318 bits (815), Expect(2) = e-134
 Identities = 158/283 (55%), Positives = 194/283 (68%)
 Frame = -2

Query: 853  RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKV 674
            RYY+NATHRN + LAN LG+YS     LKVT+     P MH+LVPSL+KKA   + GHK 
Sbjct: 863  RYYLNATHRNPRNLANALGIYSEKPGNLKVTFTNHLLPEMHILVPSLLKKATLEELGHKC 922

Query: 673  STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 494
            STYAGCQG+T  +VQI LD++TT+C+ EVLYTALSRAV+ I+FVNS   +  FW KLEAT
Sbjct: 923  STYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNSGPFNGPFWAKLEAT 982

Query: 493  PYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIF 314
            PYLKTFL L RE+KI E +                PVE          E + +K  REI+
Sbjct: 983  PYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIY 1042

Query: 313  TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 134
             + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+
Sbjct: 1043 NKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDL 1102

Query: 133  LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K I+ IK
Sbjct: 1103 LFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIK 1145



 Score =  189 bits (480), Expect(2) = e-134
 Identities = 97/176 (55%), Positives = 122/176 (69%), Gaps = 2/176 (1%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L TLRS+ R PT W PD +RARA+TSD+KN RTG A+H   Q WKET   + EN    
Sbjct: 671  EILETLRSVARAPTSWKPDASRARAYTSDIKNRRTGAAVHMAPQAWKETMDFIAENAERT 730

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIE--VVLPTNELRLDWLKKLPHNPPEQFRTF 1033
            L ISVIHGAGGSGKS+ LQ +L +   L  E  VV PTNELR DW+ KLP + P    TF
Sbjct: 731  LHISVIHGAGGSGKSRCLQEMLNKFHFLFDETLVVCPTNELRRDWIDKLPLSEPGSVLTF 790

Query: 1032 ERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 865
            ERA +      VIFDDY KLP G+IEA+++   ++ELVILTGD +Q++HHE+N+ A
Sbjct: 791  ERALMNPAKGTVIFDDYTKLPAGFIEAYSICQPNVELVILTGDAKQASHHESNDNA 846


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  481 bits (1239), Expect = e-133
 Identities = 237/285 (83%), Positives = 252/285 (88%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHK
Sbjct: 787  SRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHK 846

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
            VS+YAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEA
Sbjct: 847  VSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEA 906

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYLKTFLSLVREDKI EF A               PVE+  TTLDDFKE L DKF+REI
Sbjct: 907  TPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREI 966

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            FT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGD
Sbjct: 967  FTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGD 1026

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 2
            ILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KG
Sbjct: 1027 ILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKG 1071



 Score =  322 bits (824), Expect = 3e-85
 Identities = 163/202 (80%), Positives = 172/202 (85%)
 Frame = -3

Query: 1386 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1207
            ++L+TLRSLNRFPTPW PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN    
Sbjct: 598  RILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTE 657

Query: 1206 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1027
            LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER
Sbjct: 658  LAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 717

Query: 1026 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXSFPDT 847
            AFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEA      
Sbjct: 718  AFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEA-----L 772

Query: 846  TSMRPTATRSSWPISWVYIRPT 781
             S  P AT      S  YI  T
Sbjct: 773  ISKLPPATTIYSAFSRYYINAT 794


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  320 bits (820), Expect(2) = e-131
 Identities = 158/283 (55%), Positives = 198/283 (69%)
 Frame = -2

Query: 853  RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKV 674
            RYYINATHRN + LA  LGVYS  +    ++   +P    HLLVPS++KK  + + G+K 
Sbjct: 1111 RYYINATHRNKQDLARMLGVYSERTGLTSISMSSRPLTDTHLLVPSIIKKRTYMELGYKT 1170

Query: 673  STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 494
            STYAGCQGITAPR+QILLD DTT+C  EVLYTALSRAV  IHF+N+ A S AFW+KL AT
Sbjct: 1171 STYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVHGIHFINTGATSGAFWDKLNAT 1230

Query: 493  PYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIF 314
            PYLKTFL   RE++++E                  PVE++   L++  E L +K +REI 
Sbjct: 1231 PYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVENEKFVLEEQVEELLEKHDREIL 1290

Query: 313  TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 134
               HGHTNCVQ +D   QLFSHQQAKD+ALLW TI+ARL IS P+AN+ EF AKK++GD+
Sbjct: 1291 RPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARLKISNPKANIAEFNAKKEIGDV 1350

Query: 133  LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL K I+ +K
Sbjct: 1351 LFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPINMLK 1393



 Score =  177 bits (448), Expect(2) = e-131
 Identities = 88/169 (52%), Positives = 113/169 (66%)
 Frame = -3

Query: 1371 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 1192
            L +++R P  +  + +RA+A+ SDV+NSRTG  L  +   WKE  TM  E     +A+SV
Sbjct: 926  LTTMHRMPCAYKVNNSRAKAYASDVENSRTGLLLRSQPDHWKEALTMQAETADHTIALSV 985

Query: 1191 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 1012
            IHGAGGSGKS ALQ L+R+NP+L   VV PTNELRLDWL KLP     + +TFE+A   S
Sbjct: 986  IHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRLDWLAKLPKVELHRIKTFEKALADS 1045

Query: 1011 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 865
             +  +IF DY KLP GYIE +     +  L ILTGDPRQS++HE+NE A
Sbjct: 1046 TAATIIFGDYSKLPAGYIECYLAARPTATLAILTGDPRQSSYHESNEGA 1094


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  312 bits (800), Expect(2) = e-131
 Identities = 154/284 (54%), Positives = 192/284 (67%)
 Frame = -2

Query: 856  SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 677
            SRYY+NATHRN + LAN L VYS       +T      PG HLLVPS+ KK A+ + GHK
Sbjct: 952  SRYYLNATHRNKRDLANMLAVYSEVEGTTNITMSSTVLPGRHLLVPSMYKKQAYGEMGHK 1011

Query: 676  VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 497
            VSTYAGCQGITAP +QIL+DNDT MC+++V+YTALSRAV +IHFVN+   + AFWEKL A
Sbjct: 1012 VSTYAGCQGITAPEIQILIDNDTPMCSQQVMYTALSRAVHAIHFVNTGVTNDAFWEKLAA 1071

Query: 496  TPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREI 317
            TPYL  FL LVRE+K  + S                PVE+     D   E++ DK  RE+
Sbjct: 1072 TPYLAAFLRLVREEKTRQPSPTEDPPAQPPAPETHFPVENPKNFFDKIIENMPDKHSREL 1131

Query: 316  FTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGD 137
            F+E  GH+NCVQ +DP  Q+F HQQA+DE L W TI+ARL +S+PE N EEF +K+ +GD
Sbjct: 1132 FSEKDGHSNCVQTEDPIVQMFPHQQARDETLFWATIEARLKVSSPEKNFEEFVSKRHIGD 1191

Query: 136  ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            +L+ NY  AM LPKE  +F E LW  CA+EVQ TYL K +  +K
Sbjct: 1192 VLFENYKLAMGLPKEPIQFDEGLWNVCADEVQRTYLSKPLHMLK 1235



 Score =  183 bits (465), Expect(2) = e-131
 Identities = 91/169 (53%), Positives = 113/169 (66%)
 Frame = -3

Query: 1371 LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 1192
            L  ++R PTP+ PD  RA+AF SDVKN R G  L  +++ W E  +  TE     + +SV
Sbjct: 768  LTCIHRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRTIGLSV 827

Query: 1191 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 1012
            IHG GGSGKS ALQ  LR NP+  I V+LPTNELRLDW +KLP   P   +TFE++ +  
Sbjct: 828  IHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPNSLKTFEKSLLVG 887

Query: 1011 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 865
             S VVI DDY KLP G+IEA+  T++ LE +ILTGDP QS HHE NE A
Sbjct: 888  ASSVVIMDDYTKLPAGFIEAYINTNSGLETLILTGDPNQSFHHEPNENA 936


>ref|YP_054407.1| replication-associated protein [Opuntia virus X]
            gi|38146353|gb|AAR11547.1| replication-associated protein
            [Opuntia virus X]
          Length = 1555

 Score =  307 bits (786), Expect(2) = e-129
 Identities = 152/283 (53%), Positives = 195/283 (68%)
 Frame = -2

Query: 853  RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKV 674
            RYY+NATHRN + LAN LGVYS  +    +T      P  HLLVPSL KK A+++ GHKV
Sbjct: 963  RYYLNATHRNKQDLANMLGVYSEVAGTTSITMSPTVIPDRHLLVPSLYKKMAYSEMGHKV 1022

Query: 673  STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 494
            STYAGCQG+TAP VQIL+DNDT MC+++V+YTALSRAV +IHF+N+   + AFW KL AT
Sbjct: 1023 STYAGCQGLTAPSVQILIDNDTPMCSQQVMYTALSRAVHAIHFINTGVDNDAFWTKLAAT 1082

Query: 493  PYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIF 314
            PYL  FL LVRED ++E                  PVE++TT  D   ++++D+  REIF
Sbjct: 1083 PYLAAFLRLVREDALKESKVEEPQPQADPNPPTHFPVENETTFSDHIVDNMTDEHSREIF 1142

Query: 313  TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 134
            +++ G +NCVQ +DP  Q+F HQQAKDE L W T++ARL I++PE N  EF +KK LGD+
Sbjct: 1143 SQSTGFSNCVQTEDPVVQMFPHQQAKDETLFWATVEARLKITSPEKNFTEFISKKHLGDV 1202

Query: 133  LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 5
            L+ NY  AM LPKE   F + LW  CA+EVQ TYL K I+ I+
Sbjct: 1203 LFENYKLAMGLPKEPIAFDQKLWEVCADEVQKTYLSKPINMIQ 1245



 Score =  183 bits (464), Expect(2) = e-129
 Identities = 88/170 (51%), Positives = 118/170 (69%)
 Frame = -3

Query: 1374 TLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAIS 1195
            TL+ ++R PTP+ PD  RA++F SDVKN R G  L  +++ W +T    TE     +A+S
Sbjct: 777  TLKQIHRLPTPFLPDPLRAKSFGSDVKNLRVGALLKHQSKEWLDTFGRKTEIEPRQVALS 836

Query: 1194 VIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC 1015
            VIHG GGSGKS A+Q  +RQNP+  I V+LPTNELRLDW +K+P  P   F+TFE+A + 
Sbjct: 837  VIHGVGGSGKSHAIQEWIRQNPEEEIVVILPTNELRLDWTRKIPKAPVYMFKTFEKALLQ 896

Query: 1014 SKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 865
                VV+ DDY K+P G+IEA+ +T+ SL  +I+TGD RQS HHE NE+A
Sbjct: 897  PAPSVVVIDDYTKIPAGFIEAYIVTNPSLHTLIITGDSRQSFHHETNEQA 946