BLASTX nr result
ID: Achyranthes22_contig00020617
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00020617
(3082 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777... 82 1e-38
gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subc... 75 2e-34
gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group... 77 4e-33
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group] 66 1e-31
ref|NP_001042010.2| Os01g0146700 [Oryza sativa Japonica Group] g... 62 2e-30
gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sat... 66 3e-30
gb|ABB47941.2| retrotransposon protein, putative, unclassified [... 66 3e-30
gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indi... 76 1e-29
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza... 66 7e-29
ref|XP_004963727.1| PREDICTED: uncharacterized protein LOC101777... 74 3e-28
gb|AEJ07955.1| putative polyprotein [Sorghum propinquum] 85 8e-28
gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subc... 61 5e-25
ref|XP_002489074.1| hypothetical protein SORBIDRAFT_0139s002040 ... 68 3e-24
ref|XP_002460196.1| hypothetical protein SORBIDRAFT_02g024427 [S... 68 3e-24
ref|XP_002456118.1| hypothetical protein SORBIDRAFT_03g030787 [S... 68 3e-24
ref|XP_002444329.1| hypothetical protein SORBIDRAFT_07g020255 [S... 70 4e-24
ref|XP_002453623.1| hypothetical protein SORBIDRAFT_04g009135 [S... 70 2e-23
ref|XP_002440449.1| hypothetical protein SORBIDRAFT_09g001135 [S... 69 4e-23
emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa Japonica Group] gi... 62 7e-22
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp... 70 3e-21
>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
Length = 2179
Score = 82.0 bits (201), Expect(3) = 1e-38
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
DLW SP+ S +G+K+Y+++L+D TH+ W F KS T+ +F+ + T+F IK +
Sbjct: 634 DLWTSPVVSVSGYKYYLVILDDCTHYTWTFPLRLKSETFGVISNFFSYVRTQFDSTIKAV 693
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
QCD+GREFD++ F +H ++FR
Sbjct: 694 QCDNGREFDHSSARTFFLTHGVVFR 718
Score = 68.9 bits (167), Expect(3) = 1e-38
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQLQDY- 2380
PHKLS R T FLGY +H+GYRCLDL + +II+S HV +D++ FPF ++S +
Sbjct: 810 PHKLSPRSTLCVFLGYSSDHKGYRCLDLHSNRIIVSRHVVFDETLFPFSEMSSTPQDPHT 869
Query: 2379 -DFLGSIPNLTSSLMP 2335
DFL + +S + P
Sbjct: 870 LDFLDDADDSSSPIWP 885
Score = 59.3 bits (142), Expect(3) = 1e-38
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -1
Query: 2824 SCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
SC YTS N +A R + T+NNI R+LLF AS PP Y SL TATY++N PT
Sbjct: 720 SCPYTSQQNGRAERTLRTVNNIVRSLLFQASLPPVYWADSLHTATYLLNRHPT 772
>gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1597
Score = 75.1 bits (183), Expect(4) = 2e-34
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQLQD 2383
PHKLS R T FLGYP +H+GYRCLD ST ++IIS HV +D+ FP+ NI+SP D
Sbjct: 852 PHKLSPRSTMCIFLGYPLHHKGYRCLDPSTNRVIISRHVVFDEHSFPYANISSPSSAD 909
Score = 62.4 bits (150), Expect(4) = 2e-34
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = -2
Query: 3048 NGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFIQCDHGREFDN 2872
+G+K+Y+++L+D +H +W F +KS T+ T F+ + T+F I+ IQCD+GREFDN
Sbjct: 686 SGYKYYLVILDDCSHFVWTFPLRFKSDTFTTLSHFFAYVKTQFSTNIRSIQCDNGREFDN 745
Score = 55.8 bits (133), Expect(4) = 2e-34
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = -1
Query: 2824 SCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPTNL*IKLL 2645
SC +TS N KA R++ +INNI R+LLF AS P ++ V +L TAT++IN PT +
Sbjct: 762 SCPHTSPQNGKAERILRSINNIMRSLLFQASLPGTFWVEALHTATHLINRHPTKMLQHHT 821
Query: 2644 PF 2639
PF
Sbjct: 822 PF 823
Score = 22.7 bits (47), Expect(4) = 2e-34
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 2648 TPFQALYCKVPLYHHLCTF 2592
TPF ALY P Y HL F
Sbjct: 821 TPFFALYGVHPSYAHLRVF 839
>gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53981353|gb|AAV24907.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 1679
Score = 76.6 bits (187), Expect(3) = 4e-33
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
DLW SP+ S +G K+Y+++L+D +H++W F +KS T+ T F+ + T+F I+ I
Sbjct: 758 DLWTSPVVSASGFKYYLVILDDCSHYVWTFPLRFKSDTFTTLSHFFAYVKTQFATNIRSI 817
Query: 2901 QCDHGREFDNN 2869
QCD+GREFDN+
Sbjct: 818 QCDNGREFDNS 828
Score = 62.0 bits (149), Expect(3) = 4e-33
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIAS--PQLQD 2383
PHKL+ R T FLGYP H+GYRC D + ++IIS HV +D+ FPF + + D
Sbjct: 934 PHKLAPRSTMCVFLGYPLYHKGYRCFDPLSNRVIISRHVVFDEHSFPFTELTNGVSNATD 993
Query: 2382 YDFL 2371
DFL
Sbjct: 994 LDFL 997
Score = 53.1 bits (126), Expect(3) = 4e-33
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = -1
Query: 2836 YISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
++ SC +TS N KA R++ ++NNI R++LF A P S+ V +L TAT++IN PT
Sbjct: 840 HLRMSCPHTSPQNGKAERILRSLNNIVRSMLFQAKLPGSFWVEALHTATHLINRHPT 896
>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1480
Score = 65.9 bits (159), Expect(3) = 1e-31
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
D+W SP+ S +G K+Y+++L+DFTH W F +KS + L F + T+F I+
Sbjct: 551 DVWTSPVLSLSGFKYYLVVLDDFTHFCWTFPLRHKSDVHQHLLEFVAYVKTQFSLPIRCF 610
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
Q D+G +F N+ T F S I+ R
Sbjct: 611 QADNGTKFVNHATTSFFASRGIVLR 635
Score = 63.9 bits (154), Expect(3) = 1e-31
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 2553 HKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQLQDYDF 2374
HKLS R Y FLGY +H+G+RCLD+ST ++ IS HV +D+ FPF I +DF
Sbjct: 728 HKLSPRSAPYVFLGYSASHKGFRCLDISTRRLYISRHVVFDEKTFPFAAIPQ-DASSFDF 786
Query: 2373 L 2371
L
Sbjct: 787 L 787
Score = 57.4 bits (137), Expect(3) = 1e-31
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPTNL*I 2654
+ SC YTS N KA R++ TIN RTLL AS PPSY +L TATY++N P+
Sbjct: 634 LRLSCPYTSPQNGKAERVLRTINKSIRTLLIQASMPPSYWAEALATATYLLNRRPSTSVR 693
Query: 2653 KLLPFK 2636
+P++
Sbjct: 694 NSIPYQ 699
>ref|NP_001042010.2| Os01g0146700 [Oryza sativa Japonica Group]
gi|255672871|dbj|BAF03924.2| Os01g0146700 [Oryza sativa
Japonica Group]
Length = 725
Score = 62.0 bits (149), Expect(4) = 2e-30
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = -2
Query: 3021 LNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFIQCDHGREFDNNDFT*FCTS 2845
L+D +H+IW F KS T+ T +F+ + T+FG IK +QCD+GREFDN+ F S
Sbjct: 166 LDDCSHYIWTFPLRLKSDTFSTIANFFAHVKTQFGTTIKSVQCDNGREFDNSPARTFFLS 225
Query: 2844 HCIIFR 2827
H + FR
Sbjct: 226 HGVAFR 231
Score = 59.7 bits (143), Expect(4) = 2e-30
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = -1
Query: 2839 HYISF--SCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
H ++F SC YTS N +A R + T+NNI R+LLF A PP Y V +L TAT ++N +PT
Sbjct: 226 HGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEALHTATLLVNRIPT 285
Query: 2665 NL*IKLLPFKH 2633
P+ H
Sbjct: 286 KTLSSSTPYFH 296
Score = 59.7 bits (143), Expect(4) = 2e-30
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIAS 2398
PHKL+ R + FLGY H+GYRCL+L + +II S HV +D+S FPF ++++
Sbjct: 323 PHKLAPRSSLCVFLGYSSEHKGYRCLELGSNRIITSRHVVFDESFFPFADMST 375
Score = 21.6 bits (44), Expect(4) = 2e-30
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 2648 TPFQALYCKVPLYHHLCTF 2592
TP+ LY P Y HL F
Sbjct: 292 TPYFHLYSTQPTYDHLRVF 310
>gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sativa Japonica Group]
Length = 1417
Score = 66.2 bits (160), Expect(4) = 3e-30
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
D+W SPI S +G+K+Y++ L+DFTH+IW F KS + T SF+ T+FG + +
Sbjct: 561 DVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLAL 620
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
Q D+G+E+D+ + H + R
Sbjct: 621 QTDNGKEYDSYALRSLLSLHGAVLR 645
Score = 60.8 bits (146), Expect(4) = 3e-30
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQ 2392
PHKLS R + F+GYP +HRGYRC D+ + ++ S HV + + FPF++ SP+
Sbjct: 737 PHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPR 791
Score = 53.1 bits (126), Expect(4) = 3e-30
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = -1
Query: 2848 ISLH--YISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINI 2675
+SLH + SC Y+S N KA R++ TIN+ RT+L H++ P S+ +L+TAT++IN
Sbjct: 637 LSLHGAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAAPLSFWAEALQTATHLINR 696
Query: 2674 LPTNL*IKLLPFK 2636
P L P++
Sbjct: 697 RPCRATGSLTPYQ 709
Score = 21.9 bits (45), Expect(4) = 3e-30
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 2651 ITPFQALYCKVPLYHHLCTF 2592
+TP+Q L P Y HL F
Sbjct: 705 LTPYQLLLGAPPTYDHLRVF 724
>gb|ABB47941.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1414
Score = 66.2 bits (160), Expect(4) = 3e-30
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
D+W SPI S +G+K+Y++ L+DFTH+IW F KS + T SF+ T+FG + +
Sbjct: 561 DVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLAL 620
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
Q D+G+E+D+ + H + R
Sbjct: 621 QTDNGKEYDSYALRSLLSLHGAVLR 645
Score = 60.8 bits (146), Expect(4) = 3e-30
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQ 2392
PHKLS R + F+GYP +HRGYRC D+ + ++ S HV + + FPF++ SP+
Sbjct: 737 PHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPR 791
Score = 53.1 bits (126), Expect(4) = 3e-30
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = -1
Query: 2848 ISLH--YISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINI 2675
+SLH + SC Y+S N KA R++ TIN+ RT+L H++ P S+ +L+TAT++IN
Sbjct: 637 LSLHGAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAAPLSFWAEALQTATHLINR 696
Query: 2674 LPTNL*IKLLPFK 2636
P L P++
Sbjct: 697 RPCRATGSLTPYQ 709
Score = 21.9 bits (45), Expect(4) = 3e-30
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 2651 ITPFQALYCKVPLYHHLCTF 2592
+TP+Q L P Y HL F
Sbjct: 705 LTPYQLLLGAPPTYDHLRVF 724
>gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indica Group]
Length = 964
Score = 76.3 bits (186), Expect(3) = 1e-29
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
DLW SP++S +G+K+Y+++L+D +H +W F KS T+ T +F+ + T+F + IK I
Sbjct: 758 DLWTSPVSSVSGYKYYLVILDDCSHFVWTFPLRLKSDTFRTLTNFFAYVKTQFSKTIKSI 817
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
QCD+G +FDN F + ++ R
Sbjct: 818 QCDNGGKFDNTAARTFFLTEGVVLR 842
Score = 58.2 bits (139), Expect(3) = 1e-29
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC +TS N KA RMI +INNI R+LLF AS P S+ V +L TAT++IN PT
Sbjct: 841 LRMSCPHTSPQNGKAERMIRSINNIVRSLLFQASLPSSFWVEALHTATHLINRHPT 896
Score = 45.8 bits (107), Expect(3) = 1e-29
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLST 2467
P KLS FT+ FLGYP +H+GYRCLDLS+
Sbjct: 934 PDKLSLCFTACVFLGYPRDHKGYRCLDLSS 963
>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
Length = 1803
Score = 66.2 bits (160), Expect(3) = 7e-29
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
D+W SPI S +G+K+Y++ L+DFTH+IW F KS + T SF+ T+FG + +
Sbjct: 561 DVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLAL 620
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
Q D+G+E+D+ + H + R
Sbjct: 621 QTDNGKEYDSYALRSLLSLHGAVLR 645
Score = 60.8 bits (146), Expect(3) = 7e-29
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQ 2392
PHKLS R + F+GYP +HRGYRC D+ + ++ S HV + + FPF++ SP+
Sbjct: 737 PHKLSPRSLACVFIGYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPR 791
Score = 50.4 bits (119), Expect(3) = 7e-29
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = -1
Query: 2848 ISLH--YISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINI 2675
+SLH + SC Y+S N KA R++ TIN+ RT+L H++ P S+ +L+TA ++IN
Sbjct: 637 LSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAAPLSFWAEALQTAMHLINR 696
Query: 2674 LPTNL*IKLLPFK 2636
P L P++
Sbjct: 697 RPCRATGSLKPYQ 709
>ref|XP_004963727.1| PREDICTED: uncharacterized protein LOC101777694 [Setaria italica]
Length = 1416
Score = 73.6 bits (179), Expect(4) = 3e-28
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQLQDYD 2377
PHKL+ R T FLGY +H+GYRCLD ST ++IISHHV +D++QFPF+ + +++
Sbjct: 650 PHKLAPRSTLCVFLGYSAHHKGYRCLDRSTNRVIISHHVVFDETQFPFQQSSPVYTNEFN 709
Query: 2376 FL 2371
FL
Sbjct: 710 FL 711
Score = 63.5 bits (153), Expect(4) = 3e-28
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = -1
Query: 2836 YISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
++ SC +TS N A RMI +INN+ R+LLF AS PP+Y V L TAT+++N++PT
Sbjct: 556 HLRMSCPHTSPQNGHAERMIRSINNVVRSLLFQASMPPAYWVEGLHTATHILNLMPT 612
Score = 36.6 bits (83), Expect(4) = 3e-28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -2
Query: 2964 PTFLSFYQLILTRFGRCIKFIQCDHGREFDNN 2869
P S L RFG +K +QCD+GREFDN+
Sbjct: 513 PAGCSVKDLSSQRFGATVKAVQCDNGREFDNS 544
Score = 21.6 bits (44), Expect(4) = 3e-28
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 2648 TPFQALYCKVPLYHHLCTF 2592
TP QAL+ P Y HL F
Sbjct: 619 TPHQALFGTPPDYGHLRVF 637
>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
Length = 826
Score = 84.7 bits (208), Expect(2) = 8e-28
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = -2
Query: 3078 DLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFI 2902
DLW SPI S +G+K+Y+I+L+D +H+IW F KS T+ T +F+ + T+FG IK +
Sbjct: 657 DLWASPIVSVSGYKYYLIILDDRSHYIWTFPLRLKSDTFSTVANFFAHVRTQFGTTIKSV 716
Query: 2901 QCDHGREFDNNDFT*FCTSHCIIFR 2827
QCD+GREFDN+ F SH + R
Sbjct: 717 QCDNGREFDNSMSRTFFLSHGVALR 741
Score = 68.9 bits (167), Expect(2) = 8e-28
Identities = 36/67 (53%), Positives = 42/67 (62%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPTNL*I 2654
+ SC YTS N KA R I T+NNI R+LLF AS PP Y V +L TATY++N LPT
Sbjct: 740 LRMSCPYTSQQNGKAERSIRTMNNILRSLLFQASLPPVYWVEALHTATYLVNRLPTKTLA 799
Query: 2653 KLLPFKH 2633
PF H
Sbjct: 800 SATPFYH 806
>gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 976
Score = 61.2 bits (147), Expect(3) = 5e-25
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -2
Query: 3033 YMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKFIQCDHGREFDNN 2869
Y+++L+D +H +W F KS T+PT L F+ I T F I+ IQCD+GREFDN+
Sbjct: 265 YLVILDDCSHFVWTFPLRLKSDTFPTLLRFFAYIKTHFSTTIRSIQCDNGREFDNS 320
Score = 54.3 bits (129), Expect(3) = 5e-25
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
I SC +TS N KA R + ++NNI R+LLF AS P S+ V +L TAT++IN PT
Sbjct: 333 IRMSCPHTSPQNGKAERTLRSLNNIVRSLLFQASLPASFWVEALYTATHLINRHPT 388
Score = 48.9 bits (115), Expect(3) = 5e-25
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = -2
Query: 2553 HKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPF 2413
+KLS R T F YP +H+GYRC D ++ IS HV +D+ FPF
Sbjct: 427 NKLSPRSTLCVFRSYPTDHKGYRCFDPIYNRVYISRHVVFDEHSFPF 473
>ref|XP_002489074.1| hypothetical protein SORBIDRAFT_0139s002040 [Sorghum bicolor]
gi|241947124|gb|EES20269.1| hypothetical protein
SORBIDRAFT_0139s002040 [Sorghum bicolor]
Length = 1822
Score = 67.8 bits (164), Expect(3) = 3e-24
Identities = 33/90 (36%), Positives = 49/90 (54%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQLQDYD 2377
PHKL+ R T FLGY P+H+GYRC DL++ +++IS HV +D+S FPF +P
Sbjct: 1060 PHKLAPRSTLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDESIFPFSTTTTPASTSEH 1119
Query: 2376 FLGSIPNLTSSLMPFFGTIKTHQLLGPILQ 2287
L S+ + P F P+++
Sbjct: 1120 DLSSVFPTDPVVEPPFPVFPAGTATSPVVR 1149
Score = 54.7 bits (130), Expect(3) = 3e-24
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC YTS+ N KA RMI T N+ RTLL AS P + SL T+TY++N LP+
Sbjct: 967 LRMSCPYTSSQNGKAERMIRTTNDTVRTLLLQASLPARFWAESLHTSTYLLNRLPS 1022
Score = 39.3 bits (90), Expect(3) = 3e-24
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 2940 LILTRFGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
L +T FG IK +QCD+GREFDN+ F SH + R
Sbjct: 931 LPVTSFGLTIKAVQCDNGREFDNSTSRAFFLSHGVQLR 968
>ref|XP_002460196.1| hypothetical protein SORBIDRAFT_02g024427 [Sorghum bicolor]
gi|241923573|gb|EER96717.1| hypothetical protein
SORBIDRAFT_02g024427 [Sorghum bicolor]
Length = 1575
Score = 67.8 bits (164), Expect(3) = 3e-24
Identities = 33/90 (36%), Positives = 49/90 (54%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASPQLQDYD 2377
PHKL+ R T FLGY P+H+GYRC DL++ +++IS HV +D+S FPF +P
Sbjct: 813 PHKLAPRSTLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDESIFPFSTTTTPASTSEH 872
Query: 2376 FLGSIPNLTSSLMPFFGTIKTHQLLGPILQ 2287
L S+ + P F P+++
Sbjct: 873 DLSSVFPTDPVVEPPFPVFPAGTATSPVVR 902
Score = 54.7 bits (130), Expect(3) = 3e-24
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC YTS+ N KA RMI T N+ RTLL AS P + SL T+TY++N LP+
Sbjct: 720 LRMSCPYTSSQNGKAERMIRTTNDTVRTLLLQASLPARFWAESLHTSTYLLNRLPS 775
Score = 39.3 bits (90), Expect(3) = 3e-24
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 2940 LILTRFGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
L +T FG IK +QCD+GREFDN+ F SH + R
Sbjct: 684 LPVTSFGLTIKAVQCDNGREFDNSTSRAFFLSHGVQLR 721
>ref|XP_002456118.1| hypothetical protein SORBIDRAFT_03g030787 [Sorghum bicolor]
gi|241928093|gb|EES01238.1| hypothetical protein
SORBIDRAFT_03g030787 [Sorghum bicolor]
Length = 1567
Score = 67.8 bits (164), Expect(3) = 3e-24
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASP-QLQDY 2380
PHKL+ R T FLGY P+H+GYRC DL++ +++IS HV +D+S FPF +P ++
Sbjct: 810 PHKLAPRSTLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDESIFPFSTTTTPASTSEH 869
Query: 2379 DFLGSIP 2359
D P
Sbjct: 870 DLFSVFP 876
Score = 54.7 bits (130), Expect(3) = 3e-24
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC YTS+ N KA RMI T N+ RTLL AS P + SL T+TY++N LP+
Sbjct: 717 LRMSCPYTSSQNGKAERMIRTTNDTVRTLLLQASLPARFWAESLHTSTYLLNRLPS 772
Score = 39.3 bits (90), Expect(3) = 3e-24
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 2940 LILTRFGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
L +T FG IK +QCD+GREFDN+ F SH + R
Sbjct: 681 LPVTSFGLTIKAVQCDNGREFDNSTSRAFFLSHGVQLR 718
>ref|XP_002444329.1| hypothetical protein SORBIDRAFT_07g020255 [Sorghum bicolor]
gi|241940679|gb|EES13824.1| hypothetical protein
SORBIDRAFT_07g020255 [Sorghum bicolor]
Length = 987
Score = 70.1 bits (170), Expect(3) = 4e-24
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASP-QLQDY 2380
PHKL+ R T FLGY P+H+GYRC DL++ +++IS HV +D+ FPF +P D
Sbjct: 239 PHKLAPRSTLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDEFVFPFSTTTTPASAPDL 298
Query: 2379 DFLGSIP 2359
DF S P
Sbjct: 299 DFFSSCP 305
Score = 52.0 bits (123), Expect(3) = 4e-24
Identities = 28/56 (50%), Positives = 35/56 (62%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC YTS N KA RMI T N+ RTLL AS P + SL T+TY++N LP+
Sbjct: 146 LRMSCPYTSFQNGKAERMIRTTNDTIRTLLLQASLPARFWDESLHTSTYLLNHLPS 201
Score = 39.3 bits (90), Expect(3) = 4e-24
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 2940 LILTRFGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
L +T FG IK +QCD+GREFDN+ F SH + R
Sbjct: 110 LPVTSFGLTIKAVQCDNGREFDNSTSRAFFLSHGVQLR 147
>ref|XP_002453623.1| hypothetical protein SORBIDRAFT_04g009135 [Sorghum bicolor]
gi|241933454|gb|EES06599.1| hypothetical protein
SORBIDRAFT_04g009135 [Sorghum bicolor]
Length = 801
Score = 70.1 bits (170), Expect(3) = 2e-23
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASP-QLQDY 2380
PHKL+ R T FLGY P+H+GYRC DL++ +++IS HV +D+ FPF +P D
Sbjct: 125 PHKLAPRSTLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDEFVFPFSTTTTPASAPDL 184
Query: 2379 DFLGSIP 2359
DF S P
Sbjct: 185 DFFSSCP 191
Score = 54.3 bits (129), Expect(3) = 2e-23
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC YTS+ N KA RMI T N+ RTLL AS P + SL T+TY++N LP+
Sbjct: 32 LRMSCPYTSSQNGKAERMIRTTNDTIRTLLLQASLPARFWAESLHTSTYLLNRLPS 87
Score = 34.7 bits (78), Expect(3) = 2e-23
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 2925 FGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
F IK +QCD+GREFDN+ F SH + R
Sbjct: 1 FSLTIKAVQCDNGREFDNSTSRAFFLSHGVQLR 33
>ref|XP_002440449.1| hypothetical protein SORBIDRAFT_09g001135 [Sorghum bicolor]
gi|241945734|gb|EES18879.1| hypothetical protein
SORBIDRAFT_09g001135 [Sorghum bicolor]
Length = 488
Score = 68.9 bits (167), Expect(3) = 4e-23
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = -2
Query: 2556 PHKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPFKNIASP-QLQDY 2380
PHKL+ R T FLGY P+H+GYRC DL++ +++IS HV +D+ FPF +P D
Sbjct: 125 PHKLAPRSTLCVFLGYSPDHKGYRCYDLTSRRVLISRHVVFDEFVFPFSTTTTPASAPDL 184
Query: 2379 DFLGSIP 2359
DF + P
Sbjct: 185 DFFSTCP 191
Score = 54.3 bits (129), Expect(3) = 4e-23
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPT 2666
+ SC YTS+ N KA RMI T N+ RTLL AS P + SL T+TY++N LP+
Sbjct: 32 LRMSCPYTSSQNGKAERMIRTTNDTIRTLLLQASLPARFWAESLHTSTYLLNRLPS 87
Score = 34.7 bits (78), Expect(3) = 4e-23
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 2925 FGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
F IK +QCD+GREFDN+ F SH + R
Sbjct: 1 FSLTIKAVQCDNGREFDNSTSRAFFLSHGVQLR 33
>emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa Japonica Group]
gi|38605921|emb|CAE05956.3| OSJNBb0088C09.15 [Oryza
sativa Japonica Group]
Length = 1246
Score = 62.4 bits (150), Expect(3) = 7e-22
Identities = 33/66 (50%), Positives = 41/66 (62%)
Frame = -1
Query: 2833 ISFSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPTNL*I 2654
+ SC YTS N KA RMI T+NN RTLL AS PPSY L TATY++N P++
Sbjct: 466 LRLSCPYTSPQNGKAERMIRTLNNSIRTLLLQASMPPSYWAEGLATATYLLNRRPSSSVN 525
Query: 2653 KLLPFK 2636
+PF+
Sbjct: 526 NSIPFQ 531
Score = 58.9 bits (141), Expect(3) = 7e-22
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = -2
Query: 2553 HKLSTRFTSYDFLGYPPNHRGYRCLDLSTYKIIISHHVHYDKSQFPF 2413
HKL+ + FLGYP +H+GY CL++ST +IIIS HV +D++QFPF
Sbjct: 560 HKLAPYSAACVFLGYPSSHKGYCCLNISTRRIIISCHVIFDETQFPF 606
Score = 32.3 bits (72), Expect(3) = 7e-22
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 3003 HIWIFSSTYKSTYPTFLSFYQLILTRFGRCIKFIQCDHGREFDNNDFT*FCTSHCIIFR 2827
H+ + S + + F + T+FG +K +Q D+G EF N++ T F + R
Sbjct: 409 HVLVAPSLKSDVHRHIVEFVEYAHTQFGHRLKCLQADNGTEFVNHNTTSFLAGRGSLLR 467
>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
Length = 1296
Score = 70.5 bits (171), Expect(2) = 3e-21
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = -2
Query: 3081 ADLWISPITSFNGHKHYMILLNDFTHHIWIFSSTYKS-TYPTFLSFYQLILTRFGRCIKF 2905
+D+W SP+ S +G K+Y+I L+ ++H +W + KS T +++F + T+F R K
Sbjct: 558 SDIWTSPVPSISGLKYYLIFLDQYSHFVWAYPLHRKSDTLVKYINFSTYVQTQFNRQFKS 617
Query: 2904 IQCDHGREFDNNDFT*FCTSHCIIFRF 2824
+QCD+ RE+DN F S +FRF
Sbjct: 618 LQCDNDREYDNRAFKEHLASTRTVFRF 644
Score = 61.2 bits (147), Expect(2) = 3e-21
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = -1
Query: 2827 FSCLYTST*NDKATRMIHTINNIQRTLLFHASRPPSYRVYSLETATYVINILPTNL*IKL 2648
FSC +TS N +A RM+ TINN+ RTLLF A+ P Y +L T T+++NILP+
Sbjct: 644 FSCPHTSQQNGRAERMLRTINNMVRTLLFQAAIPAEYWAEALHTTTHLLNILPSTAIHNA 703
Query: 2647 LPFKHFIAK---YHFI 2609
+P+ K YH +
Sbjct: 704 VPYARLFEKAPTYHHL 719