BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00019464
         (1151 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 690   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   688   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   688   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   688   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   688   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   687   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   686   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   684   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   683   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   660   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   585   e-165
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   501   e-139
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             492   e-136
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   492   e-136
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               453   e-125
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   441   e-121
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   432   e-118
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 431   e-118
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   431   e-118
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 430   e-118

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  690 bits (1781), Expect = 0.0
 Identities = 339/383 (88%), Positives = 354/383 (92%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ P+VIFDDYGKLPQGYIEAFA
Sbjct: 668  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFA 727

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSKFLANK
Sbjct: 728  MTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANK 787

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LG+YSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 788  LGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 847

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 848  LDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 907

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            FS                PVE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTT
Sbjct: 908  FSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTT 967

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+
Sbjct: 968  QLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPD 1027

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSE+LWTRCAEEVQNTYLKKS++
Sbjct: 1028 FSEELWTRCAEEVQNTYLKKSLN 1050


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  688 bits (1776), Expect = 0.0
 Identities = 340/383 (88%), Positives = 350/383 (91%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740  MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTT
Sbjct: 920  FTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVS 1062


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  688 bits (1776), Expect = 0.0
 Identities = 340/383 (88%), Positives = 350/383 (91%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740  MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTT
Sbjct: 920  FTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVS 1062


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  688 bits (1776), Expect = 0.0
 Identities = 340/383 (88%), Positives = 350/383 (91%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740  MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTT
Sbjct: 920  FTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVS 1062


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  688 bits (1776), Expect = 0.0
 Identities = 340/383 (88%), Positives = 350/383 (91%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740  MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTT
Sbjct: 920  FTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVS 1062


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  687 bits (1774), Expect = 0.0
 Identities = 336/383 (87%), Positives = 354/383 (92%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 11   LPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 70

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINATHRNSKFLANK
Sbjct: 71   MTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINATHRNSKFLANK 130

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 131  LGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 190

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRED++AE
Sbjct: 191  LDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREDRVAE 250

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            FS                PVED TTTLDDF+E L DKF+REIF +AHGHTNCVQ D+PTT
Sbjct: 251  FSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHTNCVQTDNPTT 310

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 311  QLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPD 370

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLWTRCAEEVQNTYLKKS++
Sbjct: 371  FSEDLWTRCAEEVQNTYLKKSVA 393


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  686 bits (1770), Expect = 0.0
 Identities = 339/383 (88%), Positives = 349/383 (91%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK LANK
Sbjct: 740  MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTT
Sbjct: 920  FTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVS 1062


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  684 bits (1765), Expect = 0.0
 Identities = 338/383 (88%), Positives = 349/383 (91%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740  MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSNSCPLKVTYGFQP+PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTT
Sbjct: 920  FTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS+S
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVS 1062


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  683 bits (1763), Expect = 0.0
 Identities = 337/383 (87%), Positives = 348/383 (90%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA
Sbjct: 680  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            +THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740  LTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQIL
Sbjct: 800  LGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 860  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTT
Sbjct: 920  FTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTT 979

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980  QLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPD 1039

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKKS++
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVA 1062


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  660 bits (1703), Expect = 0.0
 Identities = 325/383 (84%), Positives = 344/383 (89%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SP+VIFDDYGKLPQGY+EAFA
Sbjct: 685  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFA 744

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            +THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S  SRYYINAT RNSKFLANK
Sbjct: 745  LTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANK 804

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYS+NSCPL VTYGFQP PGLHLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQIL
Sbjct: 805  LGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQIL 864

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 865  LDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITE 924

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F                 PVE+  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTT
Sbjct: 925  FQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTT 984

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+
Sbjct: 985  QLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPD 1044

Query: 71   FSEDLWTRCAEEVQNTYLKKSIS 3
            FSEDLW RCAEEVQNTYLKK+++
Sbjct: 1045 FSEDLWNRCAEEVQNTYLKKTMA 1067


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  585 bits (1509), Expect = e-165
 Identities = 287/382 (75%), Positives = 322/382 (84%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +P+VIFDDYGKLPQG++EAFA
Sbjct: 661  LPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFA 720

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            +    L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN K LANK
Sbjct: 721  LCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANK 780

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYSSN  PL V+YGF+P+PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQIL
Sbjct: 781  LGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQIL 840

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ E
Sbjct: 841  LDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEE 900

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            F+                PVE+ + TL   ++SL+DK++REI    HG TNCVQ +D T 
Sbjct: 901  FTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTV 960

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+
Sbjct: 961  QLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPD 1020

Query: 71   FSEDLWTRCAEEVQNTYLKKSI 6
            FS +LW RCA EVQ TYL KS+
Sbjct: 1021 FSPELWERCAAEVQQTYLSKSL 1042


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  501 bits (1291), Expect = e-139
 Identities = 246/381 (64%), Positives = 299/381 (78%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAFA
Sbjct: 755  LPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFA 814

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            +TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYYINATHRN+K LAN 
Sbjct: 815  VTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLANM 874

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++AGHK STYAGCQGITA K+QIL
Sbjct: 875  LGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQIL 934

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            LD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEKLEATPYLKTFLS+VREDKI E
Sbjct: 935  LDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILE 994

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
            +                 PVE+  T L++F E L+ K EREIF E+HGHTNCVQ D+   
Sbjct: 995  WRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKII 1054

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GDILW NY +AM LP++   
Sbjct: 1055 QTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIP 1114

Query: 71   FSEDLWTRCAEEVQNTYLKKS 9
            F E+LW   A E+Q+TYL KS
Sbjct: 1115 F-EELWELAAREIQHTYLSKS 1134


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  492 bits (1266), Expect = e-136
 Identities = 247/381 (64%), Positives = 285/381 (74%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            ++VVLPTNELRLDW+ K P   PE+ +T+ERAF    SP+V+FDDYGKLP GYIEA+   
Sbjct: 689  LQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAV 748

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
               +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL 
Sbjct: 749  QTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLE 808

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS      K+T GFQP   LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLD
Sbjct: 809  VYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLD 868

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
            NDT MC+KEVLYTALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ IA   
Sbjct: 869  NDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQ 928

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QL
Sbjct: 929  LPNADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQL 988

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            F HQQAKDEALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FS
Sbjct: 989  FPHQQAKDEALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFS 1048

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
            EDLW   A EVQNTYL K ++
Sbjct: 1049 EDLWRLSAAEVQNTYLSKPMN 1069


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  492 bits (1266), Expect = e-136
 Identities = 247/381 (64%), Positives = 285/381 (74%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            ++VVLPTNELRLDW+ K P   PE+ +T+ERAF    SP+V+FDDYGKLP GYIEA+   
Sbjct: 689  LQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAV 748

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
               +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL 
Sbjct: 749  QTRVELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLE 808

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS      K+T GFQP   LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLD
Sbjct: 809  VYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLD 868

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
            NDT MC+KEVLYTALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ IA   
Sbjct: 869  NDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQ 928

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PVE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QL
Sbjct: 929  LPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQL 988

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            F HQQAKDEALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FS
Sbjct: 989  FPHQQAKDEALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFS 1048

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
            EDLW   A EVQNTYL K ++
Sbjct: 1049 EDLWRLSAAEVQNTYLSKPMN 1069


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  453 bits (1165), Expect = e-125
 Identities = 218/381 (57%), Positives = 281/381 (73%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            I  +LPTNELR DWL KLP  P    +TFERA +  + P+VIFDDY KLP GYI+AF   
Sbjct: 978  INTILPTNELRNDWLTKLPKMPLTAIQTFERALISPQKPVVIFDDYSKLPAGYIDAFLSL 1037

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
            H ++E  ILTGDPRQST HE+NE+A+I+ L+ +T  FS+ SRYYINATHRN + LA  LG
Sbjct: 1038 HKNVEWAILTGDPRQSTFHESNEQAMINHLSKSTEHFSQFSRYYINATHRNKQDLARFLG 1097

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS  +    ++   +P+P  HLLVPSL+KK ++T+ G+K STYAGCQGITA +VQ+LLD
Sbjct: 1098 VYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLD 1157

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
             DTT+C+ +VLYTALSRAV ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E  
Sbjct: 1158 TDTTLCSDQVLYTALSRAVHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEG 1217

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PVE++  +L+D  E L +K ERE+++  HG++NCVQ DDP  QL
Sbjct: 1218 PKPETPEEPKPATTHFPVENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQL 1277

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            FSHQQAKD+ LLW TI+ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS
Sbjct: 1278 FSHQQAKDQTLLWATIEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFS 1337

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
             +LW  CAEEVQ TYL K ++
Sbjct: 1338 HELWHACAEEVQKTYLSKPLN 1358


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  441 bits (1135), Expect = e-121
 Identities = 217/380 (57%), Positives = 271/380 (71%)
 Frame = -1

Query: 1151 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFA 972
            L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   +PIVIFDDYGKLP GY+EAF 
Sbjct: 842  LDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPPTPIVIFDDYGKLPAGYVEAFC 901

Query: 971  MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 792
            +  ++++L+ILTGD +QS HHE+NE A  S + P     SEL RYYINATHRN K LANK
Sbjct: 902  LYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEASELCRYYINATHRNKKDLANK 961

Query: 791  LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQIL 612
            LGVYS  +   +VT+G  P PGLH+LVPSL KK AF++ GHKVSTYAGCQGITAPK+QIL
Sbjct: 962  LGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEMGHKVSTYAGCQGITAPKIQIL 1021

Query: 611  LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAE 432
            L  +T++C++EVLYTALSRAV SIHFVN++  + AFW+KLE TPYLK FLS +RE+    
Sbjct: 1022 LTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKKLECTPYLKAFLSTLREEVAQP 1081

Query: 431  FSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 252
                                ED     ++  E + +K EREIF+E HGH+NCVQ +DP  
Sbjct: 1082 IEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHEREIFSEKHGHSNCVQTEDPFI 1141

Query: 251  QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 72
            Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+  K+ +G++L+ +Y +AM LPK    
Sbjct: 1142 QMFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRPVGEVLFESYKRAMHLPKMPIP 1201

Query: 71   FSEDLWTRCAEEVQNTYLKK 12
            F EDLW     EVQ TYL K
Sbjct: 1202 FEEDLWNSSMHEVQKTYLSK 1221


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  432 bits (1111), Expect = e-118
 Identities = 215/381 (56%), Positives = 264/381 (69%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            + +VLPTNELRLDWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIE+F+  
Sbjct: 838  VTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESFSFY 897

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
             +S EL++LTGD +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLG
Sbjct: 898  MSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLG 957

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS  +    +T G  P PGLHLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL 
Sbjct: 958  VYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHKVSTYAGCQGLTAPRVQILLS 1017

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
             +T+MC++EV+YTALSRAV SIHFVN +  + AFW KLE+TPYLK FLS +RED      
Sbjct: 1018 EETSMCSREVIYTALSRAVHSIHFVNCSPNNQAFWAKLESTPYLKAFLSTLREDAAPVVK 1077

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PV+      +D  E + +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1078 PKEEAPAPVDPPKTHIPVDSAMPIYEDILEQMPEKHEREIFSEKHGHSNCVQTEDTFVQM 1137

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            FSHQQAKDE LLW TI+ARL +S P+AN +EF  KK +GD+L+  Y +AM LP E   F 
Sbjct: 1138 FSHQQAKDETLLWATIEARLVLSNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFE 1197

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
              LW  C  EVQ TYL K I+
Sbjct: 1198 PQLWESCIHEVQRTYLAKPIN 1218


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  431 bits (1108), Expect = e-118
 Identities = 215/381 (56%), Positives = 264/381 (69%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            + +VLPTNELRLDWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+  
Sbjct: 838  VTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCY 897

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
             +S+EL++LTGD +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLG
Sbjct: 898  MSSVELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLG 957

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS  +    +T G  P PGLHLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL 
Sbjct: 958  VYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLS 1017

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
             +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED      
Sbjct: 1018 EETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVK 1077

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PV+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1078 PKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTEDTFVQM 1137

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ +GD+L+  Y +AM LP E   F 
Sbjct: 1138 FSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFE 1197

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
              LW  C  EVQ TYL K I+
Sbjct: 1198 PQLWESCIHEVQRTYLAKPIN 1218


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  431 bits (1107), Expect = e-118
 Identities = 214/381 (56%), Positives = 262/381 (68%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            + +VLPTNELRLDWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+  
Sbjct: 838  VTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFY 897

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
             +S EL++LTGD +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLG
Sbjct: 898  MSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLG 957

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS  +    +T G  P PGLHLLVPSL KK AF++ GHK STYAGCQG+TAP+VQILL 
Sbjct: 958  VYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLS 1017

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
             +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED      
Sbjct: 1018 EETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVK 1077

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PV+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1078 PKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTEDTFVQM 1137

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            FSHQQAKDE LLW TI+ARL IS P+AN +EF  KK +GD+L+  Y +AM LP E   F 
Sbjct: 1138 FSHQQAKDETLLWATIEARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFE 1197

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
              LW  C  E+Q TYL K I+
Sbjct: 1198 PQLWESCIHEIQRTYLAKPIN 1218


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  430 bits (1106), Expect = e-118
 Identities = 214/381 (56%), Positives = 263/381 (69%)
 Frame = -1

Query: 1145 IEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMT 966
            + +VLPTNELRLDWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIE+F+  
Sbjct: 838  VTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESFSFY 897

Query: 965  HASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLG 786
             +S EL++LTGD +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLG
Sbjct: 898  MSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLG 957

Query: 785  VYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLD 606
            VYS  +    +T G  P PGLHLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL 
Sbjct: 958  VYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLS 1017

Query: 605  NDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFS 426
             +T+MC++EV+YTALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED      
Sbjct: 1018 EETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVK 1077

Query: 425  XXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 246
                            PV+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1078 PKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMREKHEREIFSEKHGHSNCVQTEDTFVQM 1137

Query: 245  FSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFS 66
            FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ +GD+L+  Y +AM LP E   F 
Sbjct: 1138 FSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFE 1197

Query: 65   EDLWTRCAEEVQNTYLKKSIS 3
              LW  C  EVQ TYL K I+
Sbjct: 1198 PQLWESCIHEVQRTYLAKPIN 1218