BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00018848
         (3634 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1641   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1335   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...  1331   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...  1330   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1324   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1322   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1312   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1309   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...  1302   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1295   0.0  
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...  1293   0.0  
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...  1288   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...  1287   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1285   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1283   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1277   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1272   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1271   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1270   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1268   0.0  

>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1641 bits (4250), Expect = 0.0
 Identities = 812/984 (82%), Positives = 878/984 (89%), Gaps = 12/984 (1%)
 Frame = +1

Query: 148  IPQVQIQKQWQKPHKNTQR----THFSLFIPLPNSHLRXXXXXXXXXXXXXXXXXXXXXX 315
            IPQVQIQKQW+KP K+ ++    THFSLFIPL +  LR                      
Sbjct: 10   IPQVQIQKQWRKPLKSHKKASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSSNSFPSTLSL 69

Query: 316  XXY-----KNSVYQPSLQSQIIL---EEDLAEKDDGQFRNSEKLKNEIQLNGRIFMQDPP 471
                    K S +QPS QSQIIL   EE+LAEK DG FRNS+K+K     + RIFMQDPP
Sbjct: 70   PSLTPKLGKTSFFQPSPQSQIILDSPEEELAEKMDGHFRNSDKIKG----SSRIFMQDPP 125

Query: 472  WVNALFTKGLCEGNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEYREFVKEMRE 651
            WVN LF KGL + N G            YNLLRRRQIKAETEAWE+MVEEYREFV+EMR+
Sbjct: 126  WVNTLFMKGLVDSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFVREMRD 185

Query: 652  KKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPADKMAVIVMHK 831
            KKLAPNLPQVKA FLGWFEPLKKAIEKEQK QRSRKQKA++G+HIDMLPADKMAVIVMHK
Sbjct: 186  KKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHK 245

Query: 832  MMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNLRKNASDMPKDLLKEKEI 1011
            MM+LLMVG++ GCVRLVQAALQIG AIEQEIKIH+FLEKTKN+RKNASD+P+DLLKEKEI
Sbjct: 246  MMSLLMVGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIRKNASDLPEDLLKEKEI 305

Query: 1012 QXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSAD 1191
            Q             FEAA+LVTSED KSWSQDTQAKLGSRLIELLI+TAY+QHPTSQSAD
Sbjct: 306  QRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSAD 365

Query: 1192 NTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPK 1371
              PDV+PAFRHKFKIL NELGQQ+VKRYGVIECDPLVLKGIDRSARYM+IPYVPMLIPPK
Sbjct: 366  TPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPK 425

Query: 1372 NWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVL 1551
            NW+GYDKGGYLFLPSYVMRTHGSRKQQ+AMRKTPPQQMQKVFEALNTLG TKWRINRKVL
Sbjct: 426  NWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVL 485

Query: 1552 GVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKINRERHALRCDI 1731
            GVVE+LWASGGNI GLVNC+DVPLPEKPLTEDP EIDTWKWSVRKAKKINRERHALRCD+
Sbjct: 486  GVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDV 545

Query: 1732 ELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRSLGESGL 1911
            ELK+SVAQKM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA GR LG++GL
Sbjct: 546  ELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGL 605

Query: 1912 HWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLTAEDPFQCLAA 2091
            HWLKIHLANVYAGGVDKLSYEAR AFVENHL E+FDSA+NPI GNRWWL+AEDPFQCLAA
Sbjct: 606  HWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAA 665

Query: 2092 CIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEKPADVYS 2271
            CIDL+GALNSSSPHSFIS LPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGE+PADVYS
Sbjct: 666  CIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEEPADVYS 725

Query: 2272 DIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGVTFVGAREQIK 2451
            +IA RVREIME+DSRKDP+T+P+A+LAKVL+DQVDRKLVKQTVMTSVYGVTFVGAREQIK
Sbjct: 726  EIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIK 785

Query: 2452 RRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKVVAAENEPVRW 2631
            RRLEEK +ITDDRLLF+AACYSAKVTMSALGQLFQAAR IMDWLGDCAKV+A+EN+PVRW
Sbjct: 786  RRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQPVRW 845

Query: 2632 TTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYVHSLDGTHMMM 2811
            TTPLGLPV+QPYCK+KRHLIKTSLQVLALQ+EG+GIEVKKQRTAFPPNYVHSLDGTHMMM
Sbjct: 846  TTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMM 905

Query: 2812 TAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENLLESFQASYPTS 2991
            TAVACR+AGLQFAGVHDSFWTHACD+E+MNQILR KFVELYNMPILENLLESFQ +YP S
Sbjct: 906  TAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNMPILENLLESFQTAYPAS 965

Query: 2992 TFPPLPERGNFNLEEVLESPYFFN 3063
            TFPPLPERG+F+LEEVLESPYFFN
Sbjct: 966  TFPPLPERGDFDLEEVLESPYFFN 989


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1335 bits (3454), Expect = 0.0
 Identities = 645/877 (73%), Positives = 753/877 (85%), Gaps = 5/877 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCEGNN----GXXXXXXXXXXXXYNLLRRRQIKAETEAWENMV 615
            RIF+QDPPW+++      CE N                  Y LLRRRQ+KAETEAWE MV
Sbjct: 103  RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMV 162

Query: 616  EEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDML 795
            EEYRE  +EM EKKLAPNLP VKA FLGWFEPL++AI+KEQ+ QR++KQKA +  HI++L
Sbjct: 163  EEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELL 222

Query: 796  PADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNLRKNAS 975
            PADKMAVIVMHKMM L+M+G E GCVR+VQAA+QIG AIEQE++IH+FLEKTKN  ++ +
Sbjct: 223  PADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKT 282

Query: 976  -DMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIE 1152
                ++ L+EKEI               E  +LV +E+I  W +DTQAKLGSRLIELL E
Sbjct: 283  VGHSQEGLREKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTE 342

Query: 1153 TAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARY 1332
            TAYVQ P +QSAD  PDV+PAFRH FK +T E GQ+  ++YGVIECDPLVL G+DR+A++
Sbjct: 343  TAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKH 402

Query: 1333 MVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNT 1512
            MVIPYVPMLIPPK W+GYDKGGYLFLPSYVMRTHGSRKQQ+A++  P +Q+QKVFEAL+T
Sbjct: 403  MVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDT 462

Query: 1513 LGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAK 1692
            LG TKWRINR+VL VVES+WA GGN+ GLV+ E+VPLPEKP TED TEI  WKW+ RKAK
Sbjct: 463  LGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAK 522

Query: 1693 KINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 1872
            KIN+ERH+LRCD E+KLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL
Sbjct: 523  KINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVL 582

Query: 1873 EFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRW 2052
            EFAEGR LG+SGL WLKI LAN+YAGGV+KLSY+ R+AFV+NHL ++FDSA NP+ GNRW
Sbjct: 583  EFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRW 642

Query: 2053 WLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAV 2232
            WLTAEDPFQCLAACI+LS AL SSSPH+ IS+LPIHQDGSCNGLQHYAALGR+S EA+AV
Sbjct: 643  WLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAV 702

Query: 2233 NLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSV 2412
            NLVAGEKPADVYS+IAARV EIM+ DS KDP T+P ALLAKVL+ QVDRKLVKQTVMTSV
Sbjct: 703  NLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSV 762

Query: 2413 YGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDC 2592
            YGVT++GAREQIKRRL EK LITD+RLLFTAACY+AKVT++ALG++FQAAR IM WLG+C
Sbjct: 763  YGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGEC 822

Query: 2593 AKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPP 2772
            AKV+A+EN+PV+WTTPLGLPVIQPYCK++RHLI+TSLQVLALQ+EG  + ++KQRTAFPP
Sbjct: 823  AKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPP 882

Query: 2773 NYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILE 2952
            N+VHSLDG+HMMMTAVACR+AGL FAGVHDSFWTHACD+++MNQILREKFVELY+MPILE
Sbjct: 883  NFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILE 942

Query: 2953 NLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            NLLESFQ S+PT TFPPLP+RGNF+L EVLESPYFFN
Sbjct: 943  NLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1331 bits (3445), Expect = 0.0
 Identities = 639/875 (73%), Positives = 754/875 (86%), Gaps = 3/875 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCE-GNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEY 624
            RIF+QDPPW+ +LF KG+ +  N              YN+LRRRQIKAETEAWE MV+EY
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEY 161

Query: 625  REFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPAD 804
            ++  K MREKKLAPNLP VKA FLGWFEPL++AI +EQK Q+++K KA F  HID+LPAD
Sbjct: 162  KDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPAD 221

Query: 805  KMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNLRKNASDMP 984
            KMA+IVMHKMM L+MVG++ GCV++VQAA+ IG AIEQE++IH+FLEKTKNL+K  + + 
Sbjct: 222  KMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVA 281

Query: 985  KD--LLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1158
             +  L KEKEI               E  +L+  E++K W +D QAKLGSRLIELL ETA
Sbjct: 282  DEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETA 341

Query: 1159 YVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMV 1338
            YVQ P SQ AD+ PDV+PAFRH+FK +    GQ++VK YGVIECDPLVL G+D++A++M+
Sbjct: 342  YVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHML 401

Query: 1339 IPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLG 1518
            IPYVPML+PPK W+GYDKGG+LFLPSYVMRTHGSRKQ +AMR     QMQKVFEAL+ LG
Sbjct: 402  IPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLG 461

Query: 1519 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKI 1698
             TKWR+N+KVL VVES+WA GGNIAGLVN EDVP+P+K  +ED  EI  WKWSVRKAKKI
Sbjct: 462  STKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKI 521

Query: 1699 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1878
            N+ERH+ RCD ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF
Sbjct: 522  NQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 581

Query: 1879 AEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWL 2058
            AEGR LG+SGL WLKIHLAN+YAGGV+KLSYE R+AFV+NH+ +IFDSA+NP+ GNRWWL
Sbjct: 582  AEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWL 641

Query: 2059 TAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2238
            TAEDP QCLAACI+LS ALNS SPH+ IS+LPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 642  TAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNL 701

Query: 2239 VAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYG 2418
            V G+KPADVYS+IAARV EIM+ DS KDP T+PNALLA++L++Q+DRKLVKQTVMTSVYG
Sbjct: 702  VDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYG 761

Query: 2419 VTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAK 2598
            VT+VGAREQIKRRLEEK LITDDRLLFTAACY+AKVT++ALG++FQAAR IM WLGDCAK
Sbjct: 762  VTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAK 821

Query: 2599 VVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNY 2778
            V+A+EN+PVRWTTPLGLPV+QPYCK++RHLI+TSLQVLALQ+E + ++++KQRTAFPPN+
Sbjct: 822  VIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNF 881

Query: 2779 VHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENL 2958
            VHSLDG+HMMMTA+ACR+AGL+FAGVHDSFWTH CD++QMN+ILREKFVELY+MPILE+L
Sbjct: 882  VHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESL 941

Query: 2959 LESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            LESFQASYP  TFPPLPERG+F+L +VLESPYFFN
Sbjct: 942  LESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1330 bits (3441), Expect = 0.0
 Identities = 644/876 (73%), Positives = 747/876 (85%), Gaps = 4/876 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCE-GNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEY 624
            R+F+QDPPW++ALF KGL +  N              YNLLRRRQ+K ETEAWE MVEEY
Sbjct: 103  RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 625  REFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQR--SRKQKAVFGFHIDMLP 798
            RE  +EM EKKLAPNLP VK  FLGWFEP+++AI +EQK+Q+  S+K +A +  HI++LP
Sbjct: 163  RELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLP 222

Query: 799  ADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNL-RKNAS 975
            ADKMAVIVMHKMM L+M   E G V++VQAA+ IG AIEQE++IHNFLEKTKN  RK  +
Sbjct: 223  ADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT 282

Query: 976  DMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIET 1155
            D  + L KEKEI               E  +LV +E+IK W +D QAKLGSRL+ELL ET
Sbjct: 283  DEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTET 342

Query: 1156 AYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYM 1335
            AYVQ P  QS D+ PDVQPAFRHKFK ++ + G++M+KRYGVIECDPL+L G+DRSA++M
Sbjct: 343  AYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHM 402

Query: 1336 VIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTL 1515
            +IPYVPML+PPK W+GYDKGGYLFLPSYVMRTHGSRKQQ+A++    ++MQKVFEAL+TL
Sbjct: 403  LIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTL 462

Query: 1516 GITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKK 1695
            G TKWR+N+KVL VVES+WASGGNIAGLV+  D+P+PEKP +ED TE   WKWSVRKA K
Sbjct: 463  GSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANK 522

Query: 1696 INRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 1875
            INRERH+ RCD ELKLSVA+KM +EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE
Sbjct: 523  INRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 582

Query: 1876 FAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWW 2055
            FAEGR LG SGLHWLKIHLAN++AGGV+KLS++ R+AFV+NHL +IFDSA NPI GNRWW
Sbjct: 583  FAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWW 642

Query: 2056 LTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVN 2235
            LTAEDPFQCLAACI+LS +L SSSPHS +S LPIHQDGSCNGLQHYAALGRDS EAAAVN
Sbjct: 643  LTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVN 702

Query: 2236 LVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVY 2415
            LVAGEKPADVYS+IA RV  IM+ DS KDP TNPNA LAK+L+DQVDRKLVKQTVMTSVY
Sbjct: 703  LVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQTVMTSVY 762

Query: 2416 GVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCA 2595
            GVTFVGAREQIKRRLEEK  ITDDR+LF AACY+AKVT++ALG+LFQAAR+IM WLGDCA
Sbjct: 763  GVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIMGWLGDCA 822

Query: 2596 KVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPN 2775
            KV+A+EN+PV+WTTPLGLPV+QPY K++RHLI+TSLQVLALQ+EGD +EV+KQRTAFPPN
Sbjct: 823  KVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQRTAFPPN 882

Query: 2776 YVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILEN 2955
            +VHSLDG+HMMMTAVACR+AGL FAGVHDSFWTHACD+E+MNQILREKFVELY+MP+LEN
Sbjct: 883  FVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELYSMPVLEN 942

Query: 2956 LLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            L ES Q SYP+  FPPLPERGNF+L EVL+SPYFFN
Sbjct: 943  LFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1324 bits (3426), Expect = 0.0
 Identities = 633/874 (72%), Positives = 749/874 (85%), Gaps = 2/874 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCEGNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEYR 627
            RIF+QDPPW +++F KGL +                +NLLRRRQ+K ETEAWE MV+EY+
Sbjct: 138  RIFVQDPPWFSSIFLKGLYKRIK--LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYK 195

Query: 628  EFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPADK 807
            E   +M EK+LAPNLP +K  FLGWF PL++AIE+EQK+QR++KQKA +  HI++LPADK
Sbjct: 196  ELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIELLPADK 255

Query: 808  MAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNLRKNA--SDM 981
            +AVIVMHKMM L+M G E  CV++VQAA+ IG AIEQEI+IH+FLEKTKN ++    +D 
Sbjct: 256  VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 315

Query: 982  PKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAY 1161
             + L KEKE+               EA +L+ +E+ K W +DTQAKLGSRL+ELLIETAY
Sbjct: 316  EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAY 375

Query: 1162 VQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVI 1341
            VQHP + +  + PDV+PAFRH+FK +    GQ+  KRYGV+ECDPLVL G+DRSA++M+I
Sbjct: 376  VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHMLI 435

Query: 1342 PYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGI 1521
            PYVPML+PPK W+GY+KGGYLFLPSYVMRTHGSRKQQEA++      M+KVFEAL+TLG 
Sbjct: 436  PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 495

Query: 1522 TKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKIN 1701
            TKWR+N++VL V+ES+W SGGNIAGLV+  DVP+PEKPL+ED TE+  WKWSVRKAKKIN
Sbjct: 496  TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKIN 555

Query: 1702 RERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 1881
            +ERH+ RCD ELKLSVA++M+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFA
Sbjct: 556  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 615

Query: 1882 EGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLT 2061
            EGR LG+SGL WLKIHLAN+++GGV+KLS++ R+AFVENHL EIFDSA NPI G+RWWLT
Sbjct: 616  EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 675

Query: 2062 AEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLV 2241
            AEDPFQCLAACI+LS AL SSSPHS IS+LPIHQDGSCNGLQHYAALGR++ EAAAVNLV
Sbjct: 676  AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 735

Query: 2242 AGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGV 2421
            AGEKPADVYS+IA RV EIM+ DS KDP  +P ALLAK+L+DQVDRKLVKQTVMTSVYGV
Sbjct: 736  AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 795

Query: 2422 TFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKV 2601
            TFVGAREQIKRRLEEK  ITDDR LF AACY+AKVT++ALG++F+AARSIM WLGDCAKV
Sbjct: 796  TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 855

Query: 2602 VAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYV 2781
            +A+EN+PVRWTTPLGLPV+QPYCKN+RHLI+TSLQVLALQ+EG  +E++KQRTAFPPN+V
Sbjct: 856  IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFV 915

Query: 2782 HSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENLL 2961
            HSLDG+HMMMTAVACR+AGL FAGVHDSFWTHACD+++MNQILR+KFVELYNMPILENLL
Sbjct: 916  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPILENLL 975

Query: 2962 ESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            ESFQ SYPT +FPPLPERGNF+LEEVLESPYFFN
Sbjct: 976  ESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1322 bits (3421), Expect = 0.0
 Identities = 637/891 (71%), Positives = 758/891 (85%), Gaps = 8/891 (0%)
 Frame = +1

Query: 415  EKLKNEIQLN-----GRIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRR 576
            E L+N I+        RIF+QDPPW+ +LF KG+ +  N              YNLLRRR
Sbjct: 83   ENLENSIKFQVPISEPRIFIQDPPWIASLFLKGMFKKVNKELKVESKEIDRRKYNLLRRR 142

Query: 577  QIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSR 756
            QIKAETEAWE MVE+Y++  + MREKKLAP+LP VKA FLGWFEPL++AI KEQK Q+++
Sbjct: 143  QIKAETEAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTK 202

Query: 757  KQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHN 936
            K K  F  HID+LPADKMA+IVMHK+M L+M+G++ GCV++VQAA+ IG AIEQE++IH+
Sbjct: 203  KHKQAFAPHIDLLPADKMALIVMHKLMGLVMMGNQDGCVQVVQAAVHIGMAIEQEVRIHS 262

Query: 937  FLEKTKNL-RKNASDMPKD-LLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDT 1110
            FLEK+K+L RK  S   +D L KEKEI               E  +L+  ED+K W +DT
Sbjct: 263  FLEKSKSLQRKKTSVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDT 322

Query: 1111 QAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIEC 1290
            QAKLGSRLIELL ETA+VQ P  Q AD  PDV+PAFRH+ K      GQ++VK YGVIEC
Sbjct: 323  QAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIEC 382

Query: 1291 DPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKT 1470
            DPLVL G+D++A++M+IPYVPML+PPK W+GYDKGG+LFLPSYVMRTHGSRKQ + MR  
Sbjct: 383  DPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNI 442

Query: 1471 PPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDP 1650
              +QMQKVFEAL+ LG TKWRIN+KVL VVES+WA GGNIAGLV+ EDVP+PEKP +EDP
Sbjct: 443  SGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDP 502

Query: 1651 TEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHP 1830
            TEI  W+WS RKAKK+N+ERH+ RCD ELKLSVA++M+DE+GFYYPHNLDFRGRAYPMHP
Sbjct: 503  TEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHP 562

Query: 1831 HLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAE 2010
            HLNHLSSDLCRGVLEFAEGR LG+SGL WLKIHLAN+Y+GGV+KLSY+ R++FV+NH+ +
Sbjct: 563  HLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDD 622

Query: 2011 IFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQH 2190
            IFDSA+NP+ GNRWWLTAEDP QCLAACI+LS ALNS SPH+ IS+LPIHQDGSCNGLQH
Sbjct: 623  IFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQH 682

Query: 2191 YAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQ 2370
            YAALGRD+ EAAAVNLVAGEKPADVYS+IA RV +IM+ DS KDP TNPNALLAKVL++Q
Sbjct: 683  YAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQ 742

Query: 2371 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQL 2550
            +DRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK LITDDRLLFTAACY+AKVT++ALG++
Sbjct: 743  IDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEI 802

Query: 2551 FQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEG 2730
            FQAAR IM WLGDCAKV+A+EN+PVRWTTPLGLPV+QPYCK++RHLI+TSLQVLALQ+E 
Sbjct: 803  FQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRES 862

Query: 2731 DGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQIL 2910
            + ++V+KQRTAFPPN+VHSLDG+HMMMTA+ACR+AG++FAGVHDSFWTHACD++QMNQIL
Sbjct: 863  NLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQIL 922

Query: 2911 REKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            RE FVELY+ PILENLLESFQA+YP  TFPPLPERG+F+L+EVL+SPYFFN
Sbjct: 923  RENFVELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1312 bits (3395), Expect = 0.0
 Identities = 629/874 (71%), Positives = 747/874 (85%), Gaps = 2/874 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCEGNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEYR 627
            RIF+QDPPW +++F KGL +                +NLLRRRQ+K ETEAWE MV+EY+
Sbjct: 141  RIFVQDPPWFSSIFLKGLYKRIK--LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYK 198

Query: 628  EFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPADK 807
            E   +M EK+LAPNLP +K  FLGWF PL +AIE+EQK+QR++KQKA +  HI++LPADK
Sbjct: 199  ELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADK 258

Query: 808  MAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNLRKNA--SDM 981
            MAVIVMHKMM L+M G E  CV++VQAA+ IG AIEQEI+IH+FLEKTKN ++    +D 
Sbjct: 259  MAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318

Query: 982  PKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAY 1161
             + L KEKE+               EA +L+ +E+ K W +DTQAKLGSRL+ELLIETAY
Sbjct: 319  EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAY 378

Query: 1162 VQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVI 1341
            VQHP + +  + PDV+PAFRH+FK +    GQ+  KRYGV+ECDPLVL+G+DRSA++M+I
Sbjct: 379  VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438

Query: 1342 PYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGI 1521
            PYVPML+PPK W+GY+KGGYLFLPSYVMRTHGSRKQQEA++      M+KVFEAL+TLG 
Sbjct: 439  PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498

Query: 1522 TKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKIN 1701
            TKWR+N++VL V+ES+W SGGNIAGLV+  DV +PEKPL+ED TE+  WKWSVRKAKKIN
Sbjct: 499  TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558

Query: 1702 RERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 1881
            +ERH+ RCD ELKLSVA++M+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFA
Sbjct: 559  QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618

Query: 1882 EGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLT 2061
            EGR LG+SGL WLKIHLAN+++GGV+KLS++ R+AFVENHL EIFDSA NPI G+RWWLT
Sbjct: 619  EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678

Query: 2062 AEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLV 2241
            AEDPFQCLAACI+L+ AL SSSPHS IS+LPIHQDGSCNGLQHYAALGR++ EAAAVNLV
Sbjct: 679  AEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738

Query: 2242 AGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGV 2421
            AGEKPADVYS+IA RV EIM+ DS KD   +P ALLAK+L+DQVDRKLVKQTVMTSVYGV
Sbjct: 739  AGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798

Query: 2422 TFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKV 2601
            TFVGAREQIKRRLEEK  ITDDR LF AACY+AKVT++ALG++F+AARSIM WLGDCAKV
Sbjct: 799  TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858

Query: 2602 VAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYV 2781
            +A+EN+PVRWTTPLGLPV+QPYCKN+RHLI+TSLQVLALQ+EG+ +E++KQRTAFPPN+V
Sbjct: 859  IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFV 918

Query: 2782 HSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENLL 2961
            HSLDG+HMMMTAVACR+AGL FAGVHDSFWTHACD+++MNQILR+KFVELYNMP+LENLL
Sbjct: 919  HSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLL 978

Query: 2962 ESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            ESFQ SYPT +FP LPERGNF+LEEVLESPYFFN
Sbjct: 979  ESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1309 bits (3387), Expect = 0.0
 Identities = 629/875 (71%), Positives = 742/875 (84%), Gaps = 3/875 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCE-GNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEY 624
            ++F+QDPPW++A F KG+ +  N              YNLLRRRQI+ ETEAWE M +EY
Sbjct: 8    KVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEY 67

Query: 625  REFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPAD 804
            R  V+EM E+KLAPNLP VK   LGWFEPLK+AIEKEQK+++S+KQK+ F  +I++LPAD
Sbjct: 68   RGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPAD 127

Query: 805  KMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNL--RKNASD 978
            KMAVIVMHKMM LLMVG E GCVR+VQAA+QIG AIEQE++IHNFLEKTKN   +K   +
Sbjct: 128  KMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTMHE 187

Query: 979  MPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1158
            + + + KEKE+               E   LV  ++ K WS+ TQAKLGSRLIELL ETA
Sbjct: 188  VQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETA 247

Query: 1159 YVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMV 1338
            YVQ P +QS D  PDV+PAFRH FK LT   GQ++VK+YGVIECDPL+L G+D +A++M+
Sbjct: 248  YVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHML 307

Query: 1339 IPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLG 1518
            IPY PML+PPK W+GYDKGG+LFLPSYVMRTHGSR+QQ A+R  P +QMQKVFEAL+TLG
Sbjct: 308  IPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLG 367

Query: 1519 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKI 1698
             TKWR+NR++L VVE +W SGGNIAGLV+ ED+P+PEKP ++D TEI  WKWSVRKAKKI
Sbjct: 368  NTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKI 427

Query: 1699 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1878
            N+ERH+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF
Sbjct: 428  NQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEF 487

Query: 1879 AEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWL 2058
             EGR LG+SGL WLKIHLAN+Y+GGV+KLS++ R+AFVENHL+EIFDSA NP+ G RWWL
Sbjct: 488  EEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWL 547

Query: 2059 TAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2238
             AEDPFQCLAACI+LS ALNS+SPH+ IS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNL
Sbjct: 548  KAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 607

Query: 2239 VAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYG 2418
            VA EKP+DVYS+IA RV EI+  DS KDP TNP+ALLAK+L+DQVDRKLVKQTVMTSVYG
Sbjct: 608  VAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYG 667

Query: 2419 VTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAK 2598
            VT+VGAREQIKRRLEEK  ITDDRLLF+AACY+AKVT++ALG+LFQAAR IM WLGDCAK
Sbjct: 668  VTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAK 727

Query: 2599 VVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNY 2778
            ++A+E++PV+WTTPLGLPV+QPY K +RHLIKTSLQ+LALQ+EG  ++V+KQRTAFPPN+
Sbjct: 728  IIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPPNF 787

Query: 2779 VHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENL 2958
            VHSLDG+HMMMTAVACR+AGL FAGVHDSFWTHA D++ MN+ILREKFVELYNMPILENL
Sbjct: 788  VHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILENL 847

Query: 2959 LESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            LE FQ SYPT  FPPLPERGNF+L++VL SPYFFN
Sbjct: 848  LEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1302 bits (3370), Expect = 0.0
 Identities = 630/840 (75%), Positives = 728/840 (86%), Gaps = 4/840 (0%)
 Frame = +1

Query: 556  YNLLRRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKE 735
            YNLLRRRQ+K ETEAWE MVEEYRE  +EM EKKLAPNLP VK  FLGWFEP+++AI +E
Sbjct: 18   YNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIARE 77

Query: 736  QKLQR--SRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAA 909
            QK+Q+  S+K +A +  HI++LPADKMAVIVMHKMM L+M   E G V++VQAA+ IG A
Sbjct: 78   QKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVA 137

Query: 910  IEQEIKIHNFLEKTKNL-RKNASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSED 1086
            IEQE++IHNFLEKTKN  RK  +D  + L KEKEI               E  +LV +E+
Sbjct: 138  IEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEE 197

Query: 1087 IKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMV 1266
            IK W +D QAKLGSRL+ELL ETAYVQ P  QS D+ PDVQPAFRHKFK ++ + G++M+
Sbjct: 198  IKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMM 257

Query: 1267 KRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRK 1446
            KRYGVIECDPL+L G+DRSA++M+IPYVPML+PPK W+GYDKGGYLFLPSYVMRTHGSRK
Sbjct: 258  KRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRK 317

Query: 1447 QQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLP 1626
            QQ+A++    ++MQKVFEAL+TLG TKWR+N+KVL VVES+WASGGNIAGLV+  D+P+P
Sbjct: 318  QQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIP 377

Query: 1627 EKPLTEDPTEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFR 1806
            EKP +ED TE   WKWSVRKA KINRERH+ RCD ELKLSVA+KM +EEGFYYPHNLDFR
Sbjct: 378  EKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFR 437

Query: 1807 GRAYPMHPHLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVA 1986
            GRAYPMHPHLNHLSSDLCRGVLEFAEGR LG SGLHWLKIHLAN++AGGV+KLS++ R+A
Sbjct: 438  GRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLA 497

Query: 1987 FVENHLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQD 2166
            FV+NHL +IFDSA NPI GNRWWLTAEDPFQCLAACI+LS +L SSSPHS +S LPIHQD
Sbjct: 498  FVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQD 557

Query: 2167 GSCNGLQHYAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNAL 2346
            GSCNGLQHYAALGRDS EAAAVNLVAGEKPADVYS+IA RV  IM+ DS KDP TNPNA 
Sbjct: 558  GSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNAS 617

Query: 2347 LAKVLLDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKV 2526
            LAK+L+DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK  ITDDR+LF AACY+AKV
Sbjct: 618  LAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKV 677

Query: 2527 TMSALGQLFQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQ 2706
            T++ALG+LFQAAR+IM WLGDCAKV+A+EN+PV+WTTPLGLPV+QPY K++RHLI+TSLQ
Sbjct: 678  TLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQ 737

Query: 2707 VLALQKEGDG-IEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHAC 2883
            VLALQ+EGD  +EV+KQRTAFPPN+VHSLDG+HMMMTAVACR+AGL FAGVHDSFWTHAC
Sbjct: 738  VLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHAC 797

Query: 2884 DIEQMNQILREKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            D+E+MNQILREKFVELY+MP+LENL ES Q SYP+  FPPLPERGNF+L EVL+SPYFFN
Sbjct: 798  DVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 857


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 629/875 (71%), Positives = 737/875 (84%), Gaps = 3/875 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCE-GNNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEY 624
            R+F++D PW++AL+ KG  +  N              YNLLRRRQI+ ETEAWE M EEY
Sbjct: 108  RVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEY 167

Query: 625  REFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPAD 804
               VKEM E+KLAPNLP VK+ FLGWFEPLK+AIE+EQKL++S+KQK+ F  +I++LPAD
Sbjct: 168  TGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPAD 227

Query: 805  KMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKN--LRKNASD 978
            KMAVIVMHKMM L+MVG E GCVR+VQAA+QIG AIEQE++IHNFLEKTKN   +K   D
Sbjct: 228  KMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHD 287

Query: 979  MPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1158
            + + + KEKE+               E   LV  ++ K W++D QAKLGSRLIELL ETA
Sbjct: 288  VQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLTETA 347

Query: 1159 YVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMV 1338
            YVQ P  QS    PDV+PAFRH FK +T   GQ+ VK+YGVIECDPL+L G+D +A++M+
Sbjct: 348  YVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHML 407

Query: 1339 IPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLG 1518
            IPY PML+PPK WRGYDKGG+LFLPSY+MRTHGSR+QQ+A+R  P +QMQKVFEAL+TLG
Sbjct: 408  IPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLG 467

Query: 1519 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKI 1698
             TKWR+N KVL VVE +WASGGN AGLVN  D+P+PEK  ++D TEI  WKWSVRKAKKI
Sbjct: 468  NTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKI 527

Query: 1699 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1878
            N+ERH+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF
Sbjct: 528  NQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEF 587

Query: 1879 AEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWL 2058
            AEGR LG+SGL WLKIHLAN+Y+GGV+KLS++ R+AFVENHL+EIFDSA NP+ G RWWL
Sbjct: 588  AEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWL 647

Query: 2059 TAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2238
            TAEDPFQCLAACI+LS AL S+SPH+ IS+LPIHQDGSCNGLQHYAALGRDS+EAAAVNL
Sbjct: 648  TAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNL 707

Query: 2239 VAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYG 2418
            VA EKP+DVYS+IA RV EI+  DS KDP TNP+ALLAKVL+D+VDRKLVKQTVMTSVYG
Sbjct: 708  VAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYG 767

Query: 2419 VTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAK 2598
            VT+VGAREQIKRRLEEK  ITDDR+LF+AACY+AKVT++ALG+LFQAAR IM WLGDCAK
Sbjct: 768  VTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAK 827

Query: 2599 VVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNY 2778
            V+A+E++PVRWTTPLGLPV+QPY K +RHLI+TSLQVLALQ+EG  ++V+KQRTAFPPN+
Sbjct: 828  VIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNF 887

Query: 2779 VHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENL 2958
            VHSLDG+HMMMTAVACR+A L+FAGVHDSFWTHA D + MN+ILREKFVELYNMPILENL
Sbjct: 888  VHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILENL 947

Query: 2959 LESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            LE FQ SYPT  FP LPERGNF+L+EVL SPYFFN
Sbjct: 948  LEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score = 1293 bits (3346), Expect = 0.0
 Identities = 619/891 (69%), Positives = 751/891 (84%), Gaps = 8/891 (0%)
 Frame = +1

Query: 415  EKLKNEIQLNG-----RIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRR 576
            E+L+N ++ NG     R+FMQDPPW++ALF KGL +  +              ++ LRRR
Sbjct: 104  EELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTVKIEHKYIDKRKFDSLRRR 163

Query: 577  QIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQR-- 750
            Q+K ETEAWE MV+EYR+  KEM EK LAPNLP VK  FLGWF+PLK  IE+EQKLQ+  
Sbjct: 164  QVKEETEAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNK 223

Query: 751  SRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKI 930
            S+K +A +  HI++LPADKMAVIVMHKMM L+M G E GC+++VQAA+ IG AIEQE++I
Sbjct: 224  SKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRI 283

Query: 931  HNFLEKTKNLRKNASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDT 1110
            HNFL++T+  + NA D  ++L KEK++               +A ++V SE IK W + T
Sbjct: 284  HNFLKRTR--KNNAGDSQEEL-KEKQLLRKRVNSLIRRKRIIDALKVVKSEGIKPWGRAT 340

Query: 1111 QAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIEC 1290
            QAKLGSRL+ELLIETAYVQ P +QS D+ P+ +PAFRHKFK +T   G ++V+RYGVIEC
Sbjct: 341  QAKLGSRLLELLIETAYVQPPLTQSGDSIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIEC 400

Query: 1291 DPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKT 1470
            D L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPSY+MRTHGS+KQQ+A+R  
Sbjct: 401  DSLLLAGLDKSAKHMIIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDI 460

Query: 1471 PPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDP 1650
              +   +VFEAL+TLG TKWR+NRK+L VVE LWA GGNIAGLVN EDVP+PEKP +EDP
Sbjct: 461  SSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDP 520

Query: 1651 TEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHP 1830
             E+ +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHP
Sbjct: 521  EELQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 580

Query: 1831 HLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAE 2010
            HLNHLSSDLCRG LEFAEGR LG+SGLHWLKIHLAN+YAGGV+KLS++AR+AFVE HL +
Sbjct: 581  HLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVETHLDD 640

Query: 2011 IFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQH 2190
            + DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP+S IS+LPIHQDGSCNGLQH
Sbjct: 641  VMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQH 700

Query: 2191 YAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQ 2370
            YAALGRDS EAAAVNLVAGEKPADVYS+I+ RV EIM++DS KDPE+NP A LAK+L+ Q
Sbjct: 701  YAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQ 760

Query: 2371 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQL 2550
            VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK +ITD+R+LF AACYSAKVT++ALG++
Sbjct: 761  VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEI 820

Query: 2551 FQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEG 2730
            F+AAR+IM WLGDCAK++A++N PVRW TPLGLPV+QPYC+++RHLI+TSLQVLALQ+EG
Sbjct: 821  FEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREG 880

Query: 2731 DGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQIL 2910
            + ++V+KQRTAFPPN+VHSLDGTHMMMTAVACREAGL FAGVHDS+WTHACD++ MN+IL
Sbjct: 881  NTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRIL 940

Query: 2911 REKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            REKFVELYN PILE+LL+SFQ SYP   FPP+P+RG+F+L+EVL+S YFFN
Sbjct: 941  REKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 991


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
            gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 990

 Score = 1288 bits (3333), Expect = 0.0
 Identities = 618/891 (69%), Positives = 749/891 (84%), Gaps = 8/891 (0%)
 Frame = +1

Query: 415  EKLKNEIQLNG-----RIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRR 576
            E+L+N ++ NG     R+FMQDPPW++ALF KGL +  +              ++ LRRR
Sbjct: 103  EELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRR 162

Query: 577  QIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQR-- 750
            Q+K ETEAWE MV+EYR+  KEM EK LAPNLP VK  FLGWF+PLK  IE+EQKLQ+  
Sbjct: 163  QVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNK 222

Query: 751  SRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKI 930
            S+K +A +  HI++LPADKMAVIVMHKMM L+M G E GC+++VQAA+ IG AIEQE++I
Sbjct: 223  SKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRI 282

Query: 931  HNFLEKTKNLRKNASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDT 1110
            HNFL++T+  + NA D  ++L KEK++               +A ++V +E  K W + T
Sbjct: 283  HNFLKRTR--KNNAGDSQEEL-KEKQLLRKRVNSLIRRKRIIDALKVVKTEGTKPWGRAT 339

Query: 1111 QAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIEC 1290
            QAKLGSRL+ELLIE AYVQ P +QS D+ P+ +PAFRHKFK +T   G +MV+RYGVIEC
Sbjct: 340  QAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIEC 399

Query: 1291 DPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKT 1470
            D L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPSY+MRTHGS+KQQ+A+R  
Sbjct: 400  DSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDI 459

Query: 1471 PPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDP 1650
              +   +VFEAL+TLG TKWR+NR +L VVE LWA GGNIAGLVN EDVP+PEKP +EDP
Sbjct: 460  SHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDP 519

Query: 1651 TEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHP 1830
             EI +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHP
Sbjct: 520  EEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 579

Query: 1831 HLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAE 2010
            HLNHLSSDLCRG LEFAEGR LG+SGLHWLKIHLAN++AGGV+KLS++AR+AFVENHL +
Sbjct: 580  HLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDD 639

Query: 2011 IFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQH 2190
            I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP+S IS+LPIHQDGSCNGLQH
Sbjct: 640  IMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQH 699

Query: 2191 YAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQ 2370
            YAALGRDS EAAAVNLVAGEKPADVYS+I+ RV EIM++DS KDPE+NP A LAK+L+ Q
Sbjct: 700  YAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQ 759

Query: 2371 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQL 2550
            VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK +ITD+R+LF AACYSAKVT++ALG++
Sbjct: 760  VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEI 819

Query: 2551 FQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEG 2730
            F+AAR+IM WLGDCAK++A++N PVRW TPLGLPV+QPYC+++RHLI+TSLQVLALQ+EG
Sbjct: 820  FEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREG 879

Query: 2731 DGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQIL 2910
            + ++V+KQRTAFPPN+VHSLDGTHMMMTAVACREAGL FAGVHDS+WTHACD++ MN+IL
Sbjct: 880  NTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRIL 939

Query: 2911 REKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            REKFVELYN PILE+LL+SFQ SYP   FPP+P+RG+F+L+EVL+S YFFN
Sbjct: 940  REKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 990


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score = 1287 bits (3330), Expect = 0.0
 Identities = 616/891 (69%), Positives = 751/891 (84%), Gaps = 8/891 (0%)
 Frame = +1

Query: 415  EKLKNEIQLNG-----RIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRR 576
            E+L+N ++ NG     R+FMQDPPW++ALF KGL +  +              ++ LRRR
Sbjct: 106  EELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTVKIERKDIDKRKFDSLRRR 165

Query: 577  QIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQR-- 750
            Q+K ETEAWE MV+EYR+  KEM EK LAPNLP VK  FLGWF+PLK  IE+EQKLQ+  
Sbjct: 166  QVKEETEAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNK 225

Query: 751  SRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKI 930
            S+K +A +  HI++LPADKMAVIVMHKMM L+M G E GC+++VQAA+ IG AIEQE++I
Sbjct: 226  SKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRI 285

Query: 931  HNFLEKTKNLRKNASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDT 1110
            HNFL++T+  + NA D  ++L K+K++               +A ++V SE IK W + T
Sbjct: 286  HNFLKRTR--KNNAGDSEEEL-KDKQLLRKRVNSLIRRKRIIDALKVVKSEGIKPWGRAT 342

Query: 1111 QAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIEC 1290
            QAKLGSRL+ELLIETAYVQ P +Q+ D  P+ +PAFRHKFK +T   G ++V+RYGVIEC
Sbjct: 343  QAKLGSRLLELLIETAYVQPPLTQAGDTIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIEC 402

Query: 1291 DPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKT 1470
            D L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPSY+MRTHGS+KQQ+A+R  
Sbjct: 403  DSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDI 462

Query: 1471 PPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDP 1650
              +   +VFEAL+TLG TKWR+NRK+L VVE LWA GGNIAGLVN EDVP+PEKP +EDP
Sbjct: 463  SSKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDP 522

Query: 1651 TEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHP 1830
             EI +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHP
Sbjct: 523  EEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 582

Query: 1831 HLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAE 2010
            HLNHLSSDLCRG LEFAEGR LG+SGL+WLKIHLAN+YAGGV+KLS++ R+AFVENHL  
Sbjct: 583  HLNHLSSDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDN 642

Query: 2011 IFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQH 2190
            I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP+S IS+LPIHQDGSCNGLQH
Sbjct: 643  IMDSAENPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQH 702

Query: 2191 YAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQ 2370
            YAALGRDS EAAAVNLVAGEKPADVYS+I+ RV EIM++DS KDPE+NP A LAK+L++Q
Sbjct: 703  YAALGRDSFEAAAVNLVAGEKPADVYSEISLRVHEIMKKDSSKDPESNPTAALAKILINQ 762

Query: 2371 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQL 2550
            VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK +I+D+R+LF+AACY+AKVT++ALG++
Sbjct: 763  VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERMLFSAACYAAKVTLAALGEI 822

Query: 2551 FQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEG 2730
            F+AAR+IM WLGDCAK++A++N PVRW TPLGLPV+QPYC+++RHLI+TSLQVLALQ+EG
Sbjct: 823  FEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREG 882

Query: 2731 DGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQIL 2910
            + ++V+KQRTAFPPN+VHSLDGTHMMMTAVACREAGL FAGVHDS+WTHACD++ MN+IL
Sbjct: 883  NTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRIL 942

Query: 2911 REKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            REKFVELYN PILE+LL+SFQ SYP   FPP+P+RG+F+L+EVL+S YFFN
Sbjct: 943  REKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1285 bits (3325), Expect = 0.0
 Identities = 615/891 (69%), Positives = 748/891 (83%), Gaps = 8/891 (0%)
 Frame = +1

Query: 415  EKLKNEIQLNG-----RIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRR 576
            E+L+N ++ NG     R+FMQDPPW++ALF KGL +  +              ++ LRRR
Sbjct: 106  EELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRR 165

Query: 577  QIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQR-- 750
            Q+K ETEAWE MV+EYR+  KEM EK LAPNLP VK  FLGWF+PLK  IE+EQKLQ+  
Sbjct: 166  QVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNK 225

Query: 751  SRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKI 930
            S+K +A +  HI++LPADKMAVIVMHKMM L+M G E GC+++VQAA+ IG AIEQE++I
Sbjct: 226  SKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRI 285

Query: 931  HNFLEKTKNLRKNASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDT 1110
            HNFL++T+  + NA D  ++L KEK++               +A ++V SE  K W + T
Sbjct: 286  HNFLKRTR--KNNAGDSQEEL-KEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRAT 342

Query: 1111 QAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIEC 1290
            QAKLGSRL+ELLIE AYVQ P +QS D+ P+ +PAFRH+FK +T   G ++V+RYGVIEC
Sbjct: 343  QAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIEC 402

Query: 1291 DPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKT 1470
            D L+L G+D+SA++M+IPYVPML+PPK W+GYDKGGYLFLPSY+MRTHGS+KQQ+A++  
Sbjct: 403  DSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDI 462

Query: 1471 PPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDP 1650
              +   +VFEAL+TLG TKWR+NR +L VVE LWA GGNIAGLVN EDVP+PEKP +EDP
Sbjct: 463  SHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDP 522

Query: 1651 TEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHP 1830
             E+ +WKWS RKA KINRERH+LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHP
Sbjct: 523  EELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 582

Query: 1831 HLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAE 2010
            HLNHLSSDLCRG LEFAEGR LG+SGLHWLKIHLAN+YAGGV+KLS++AR+AFVENHL +
Sbjct: 583  HLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDD 642

Query: 2011 IFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQH 2190
            I DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP+S IS+LPIHQDGSCNGLQH
Sbjct: 643  IMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQH 702

Query: 2191 YAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQ 2370
            YAALGRDS EAAAVNLVAGEKPADVYS+I+ RV EIM++DS KDPE+NP A LAK+L+ Q
Sbjct: 703  YAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQ 762

Query: 2371 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQL 2550
            VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK +ITD+R+LF AACYSAKVT++ALG++
Sbjct: 763  VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEI 822

Query: 2551 FQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEG 2730
            F+AAR+IM WLGDCAK++A++N PVRW TPLGLPV+QPYC+++RHLI+TSLQVLALQ+EG
Sbjct: 823  FEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREG 882

Query: 2731 DGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQIL 2910
            + ++V+KQRTAFPPN+VHSLDGTHMMMTAVACREAGL FAGVHDS+WTHACD++ MN+IL
Sbjct: 883  NTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRIL 942

Query: 2911 REKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            REKFVELYN PILE+LL+SFQ SYP   FPP+P+RG+F+L+EVL+S YFFN
Sbjct: 943  REKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1283 bits (3321), Expect = 0.0
 Identities = 622/895 (69%), Positives = 741/895 (82%), Gaps = 10/895 (1%)
 Frame = +1

Query: 409  NSEKLKNEI---QLNGRIFMQDPPWVNALFTKGLC----EGNNGXXXXXXXXXXXXYNLL 567
            N +K+ N     + N R+F+QDPPWV++LF   L     +                Y +L
Sbjct: 83   NLQKIPNGFLNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAML 142

Query: 568  RRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQ 747
            RRRQIKAETEAWE MVEEYRE  +EM EKKLAPNLP VK   LGWFEPL++AIEKEQ  +
Sbjct: 143  RRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAE 202

Query: 748  RSRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGD-EPGCVRLVQAALQIGAAIEQEI 924
             + K +A F  HID LPADKMAVIVMHK+M LLM+G  E  CV++VQAA+QIG A+E E+
Sbjct: 203  TTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEV 262

Query: 925  KIHNFLEKTKNLRKN--ASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSW 1098
            +IHNFLEKTK L+K+   +   +D+ KE  I               E  +L+ SE+ +SW
Sbjct: 263  RIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESW 322

Query: 1099 SQDTQAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYG 1278
             +DTQAKLG RL+ELL ETAYVQ P  QSAD  PD++PAFRH FKI T + G+ +VK+YG
Sbjct: 323  GRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYG 382

Query: 1279 VIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEA 1458
            VIECDPLV+ G+DR+ + M+IPYVPML+PPK WRGYDKGGYLFLPSY+MRTHGSR+QQ+A
Sbjct: 383  VIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDA 442

Query: 1459 MRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPL 1638
            +R  P +QMQ+V+EAL+TLG TKWR+N+++L VVES+WA GGNIAGLV+ +DVP+PE   
Sbjct: 443  VRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSN 502

Query: 1639 TEDPTEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAY 1818
            ++D  E+  WKW VRK+KKIN+E H+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAY
Sbjct: 503  SDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAY 562

Query: 1819 PMHPHLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVEN 1998
            PMHPHLNHLSSDLCRG+LEFAEGR LG+SGL WLKIHLA++YAGGV+KL Y+AR+AFVEN
Sbjct: 563  PMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVEN 622

Query: 1999 HLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCN 2178
            H+ +I DSA+NP+ GNRWWL AEDPFQCLAACI+LS AL SSSPH+ IS+LPIHQDGSCN
Sbjct: 623  HIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCN 682

Query: 2179 GLQHYAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKV 2358
            GLQHYAALGRDS EAAAVNLVAGEKPADVY++IA RV  I+  DS KDP  +PNALLAK+
Sbjct: 683  GLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKL 742

Query: 2359 LLDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSA 2538
            L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK LI DDRLLFTA+CY+AKVT++A
Sbjct: 743  LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAA 802

Query: 2539 LGQLFQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLAL 2718
            LG+LFQAAR  M WLGDCAKV+A EN+PVRWTTPLGLPV+QPY K +RH+I+TSLQ+LAL
Sbjct: 803  LGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILAL 862

Query: 2719 QKEGDGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQM 2898
            Q+EGD +EV+KQRTAFPPN+VHSLDG+HMMMTAVACR+AGLQFAGVHDSFWTHACD++QM
Sbjct: 863  QREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQM 922

Query: 2899 NQILREKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            N+ILREKFVELY++PILE+LLE+FQ SYP  TFPPLP+RG+FNL EVLESPYFFN
Sbjct: 923  NRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1277 bits (3304), Expect = 0.0
 Identities = 620/895 (69%), Positives = 743/895 (83%), Gaps = 10/895 (1%)
 Frame = +1

Query: 409  NSEKLKNEI---QLNGRIFMQDPPWVNALFTKGLC----EGNNGXXXXXXXXXXXXYNLL 567
            N +K+ N +   + N R+F+QDPPWV++LF   L     +                Y +L
Sbjct: 84   NLQKIANGVLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAML 143

Query: 568  RRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQ 747
            RRRQIKAETEAWE MVEEYRE  +EM EKKLAPNLP VK   LGWFEPL++AIEKEQ  +
Sbjct: 144  RRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAE 203

Query: 748  RSRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGD-EPGCVRLVQAALQIGAAIEQEI 924
             + K +A F  HID LPADKMAVIVMHK+M LLM+G  E  CV++VQAA+QIG A+E E+
Sbjct: 204  TTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEV 263

Query: 925  KIHNFLEKTKNLRKN--ASDMPKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSW 1098
            +IHNFLEKTK L+K+   +   +D+ +E  I               E  +L+ SE+ +SW
Sbjct: 264  RIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESW 323

Query: 1099 SQDTQAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYG 1278
             +DTQAKLG RL+ELL ETAYVQ P  QSAD  PD++PAFRH F+I T + G+ +VK+YG
Sbjct: 324  GRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYG 383

Query: 1279 VIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEA 1458
            VIECDPLV+ G+DR+ + M+IPYVPML+PPK WRGYDKGGYLFLPSY+MRTHGSR+QQ+A
Sbjct: 384  VIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDA 443

Query: 1459 MRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPL 1638
            +R  P +QMQ+V+EAL+TLG TKWR+N+++L VVES+WA GGNIAGLV+ +DVP+PE   
Sbjct: 444  VRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH- 502

Query: 1639 TEDPTEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAY 1818
            ++D  E+  WKW VRK+KKIN+E H+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAY
Sbjct: 503  SDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAY 562

Query: 1819 PMHPHLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVEN 1998
            PMHPHLNHLSSDLCRG+LEFAEGR LG+SGL WLKIHLA++YAGG++KL Y+AR+AFVEN
Sbjct: 563  PMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVEN 622

Query: 1999 HLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCN 2178
            H+ +I DSA+NP+ GNRWWL AEDPFQCLAACI+LS AL SSSPH+  S+LPIHQDGSCN
Sbjct: 623  HIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCN 682

Query: 2179 GLQHYAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKV 2358
            GLQHYAALGRDS EAAAVNLVAG+KPADVY++IA RV  I+  DS KDP T+PNALLAK+
Sbjct: 683  GLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKL 742

Query: 2359 LLDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSA 2538
            L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK LI DDRLLFTA+CY+AKVT++A
Sbjct: 743  LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAA 802

Query: 2539 LGQLFQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLAL 2718
            LG+LFQAAR  M WLGDCAKV+A+EN+PVRWTTPLGLPV+QPY K +RH+I+TSLQVLAL
Sbjct: 803  LGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLAL 862

Query: 2719 QKEGDGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQM 2898
            Q+EGD +EV+KQRTAFPPN+VHSLDG+HMMMTAVACR+AGLQFAGVHDSFWTHACD++QM
Sbjct: 863  QREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQM 922

Query: 2899 NQILREKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            N+ILREKFVELY+MPILE+LLESFQ SYP  TFPPLP+RG+F+L EVLESPYFFN
Sbjct: 923  NRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1272 bits (3291), Expect = 0.0
 Identities = 620/911 (68%), Positives = 746/911 (81%), Gaps = 13/911 (1%)
 Frame = +1

Query: 370  EEDLAEKDDGQFRNSEKLKNEIQL------NGRIFMQDPPWVNALFTKGLC----EGNNG 519
            +E+L E  + +  N +K+ N   L      N R+F+QDPPWV++LF   L     +    
Sbjct: 107  DENLTENLE-ELVNLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGV 165

Query: 520  XXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKAFFLG 699
                        Y +LRRRQIKAETEAWE MVEEYRE  +EM EKKLAPNLP VK   LG
Sbjct: 166  RREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLG 225

Query: 700  WFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPADKMAVIVMHKMMALLMVGD-EPGCVR 876
            WFEPL++AIEKEQ  + ++K +  +  HID LPADKMAVIVMHK+M LLM+G  E  CV+
Sbjct: 226  WFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQ 285

Query: 877  LVQAALQIGAAIEQEIKIHNFLEKTKNLRKNASDMP--KDLLKEKEIQXXXXXXXXXXXX 1050
            +VQAA+QIG A+E E++IHNF+EKTK  +K+ S     +D+ +E  I             
Sbjct: 286  VVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMSGAQGQEDMSRETMILRKRVKSLIKRNR 345

Query: 1051 XFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNTPDVQPAFRHKF 1230
              E  +L+ SE+ +SW +DTQAKLG RL+ELL ETAYVQ P  QSAD  PD++PAFRH F
Sbjct: 346  VVEVRKLMQSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVF 405

Query: 1231 KILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPMLIPPKNWRGYDKGGYLFL 1410
            +I T + G+ +VK+YGVIECDPLV+ G+DR+ + M+IPYVPML+PPK WRGYDKGGYLFL
Sbjct: 406  RIATRDPGKNIVKKYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFL 465

Query: 1411 PSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNI 1590
            PSY+MRTHGSR+QQ+A+R  P +QMQ+V+EAL+TLG TKWR+N+++L VVES+WA GGNI
Sbjct: 466  PSYLMRTHGSRRQQDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNI 525

Query: 1591 AGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDE 1770
            AGLV+ +DVP+PE   ++D  E+  WKW VRKAKKIN+E H+ RCD ELKLSVA+K++DE
Sbjct: 526  AGLVDRKDVPIPELH-SDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDE 584

Query: 1771 EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRSLGESGLHWLKIHLANVYAG 1950
            EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGR LG+SGL WLK+HLA++YAG
Sbjct: 585  EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAG 644

Query: 1951 GVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSP 2130
            G++KL Y+AR+AFVENH+ +I DSA NP+ GNRWWL AEDP QCLAACI+LS AL S SP
Sbjct: 645  GIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSP 704

Query: 2131 HSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEKPADVYSDIAARVREIMEED 2310
            H+ IS+LPIHQDGSCNGLQHYAALGRDS EAAAVNLVAGEKPADVY++IA RV  I+  D
Sbjct: 705  HTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGD 764

Query: 2311 SRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKDLITDDR 2490
            S KDP T+PNALLAK+L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEK LI DDR
Sbjct: 765  STKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDR 824

Query: 2491 LLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKVVAAENEPVRWTTPLGLPVIQPYC 2670
            LLFTA+CY+AKVT++ALG+LFQAAR  M WLGDCAKV+A+EN+PVRWTTPLGLPV+QPY 
Sbjct: 825  LLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYF 884

Query: 2671 KNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACREAGLQFA 2850
            K +RH+I+TSLQVLALQ+EGD +EV+KQRTAFPPN+VHSLDG+HMMMTAVACR+AGL FA
Sbjct: 885  KTQRHVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 944

Query: 2851 GVHDSFWTHACDIEQMNQILREKFVELYNMPILENLLESFQASYPTSTFPPLPERGNFNL 3030
            GVHDSFWTHACD++QMN+ILREKFVELY+MPILE+LLESFQ SYP  TFPPLP+RG+F+L
Sbjct: 945  GVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDL 1004

Query: 3031 EEVLESPYFFN 3063
            +EVLESPYFFN
Sbjct: 1005 QEVLESPYFFN 1015


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1271 bits (3289), Expect = 0.0
 Identities = 611/808 (75%), Positives = 713/808 (88%), Gaps = 1/808 (0%)
 Frame = +1

Query: 643  MREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPADKMAVIV 822
            M EKKLAPNLP VKA FLGWFEPL++AI+KEQ+ QR++KQKA +  HI++LPADKMAVIV
Sbjct: 1    MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60

Query: 823  MHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTKNLRKNAS-DMPKDLLK 999
            MHKMM L+M+G E GCVR+VQAA+QIG AIEQE++IH+FLEKTKN  ++ +    ++ L+
Sbjct: 61   MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGLR 120

Query: 1000 EKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTS 1179
            EKEI               E  +LV +E+I  W +DTQAKLGSRLIELL ETAYVQ P +
Sbjct: 121  EKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPVN 180

Query: 1180 QSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVIPYVPML 1359
            QSAD  PDV+PAFRH FK +T E GQ+  ++YGVIECDPLVL G+DR+A++MVIPYVPML
Sbjct: 181  QSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPML 240

Query: 1360 IPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGITKWRIN 1539
            IPPK W+GYDKGGYLFLPSYVMRTHGSRKQQ+A++  P +Q+QKVFEAL+TLG TKWRIN
Sbjct: 241  IPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRIN 300

Query: 1540 RKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKINRERHAL 1719
            R+VL VVES+WA GGN+ GLV+ E+VPLPEKP TED TEI  WKW+ RKAKKIN+ERH+L
Sbjct: 301  RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 360

Query: 1720 RCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRSLG 1899
            RCD E+KLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGR LG
Sbjct: 361  RCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 420

Query: 1900 ESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLTAEDPFQ 2079
            +SGL WLKI LAN+YAGGV+KLSY+ R+AFV+NHL ++FDSA NP+ GNRWWLTAEDPFQ
Sbjct: 421  KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 480

Query: 2080 CLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEKPA 2259
            CLAACI+LS AL SSSPH+ IS+LPIHQDGSCNGLQHYAALGR+S EA+AVNLVAGEKPA
Sbjct: 481  CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPA 540

Query: 2260 DVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGVTFVGAR 2439
            DVYS+IAARV EIM+ DS KDP T+P ALLAKVL+ QVDRKLVKQTVMTSVYGVT++GAR
Sbjct: 541  DVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAR 600

Query: 2440 EQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKVVAAENE 2619
            EQIKRRL EK LITD+RLLFTAACY+AKVT++ALG++FQAAR IM WLG+CAKV+A+EN+
Sbjct: 601  EQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQ 660

Query: 2620 PVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYVHSLDGT 2799
            PV+WTTPLGLPVIQPYCK++RHLI+TSLQVLALQ+EG  + ++KQRTAFPPN+VHSLDG+
Sbjct: 661  PVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGS 720

Query: 2800 HMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENLLESFQAS 2979
            HMMMTAVACR+AGL FAGVHDSFWTHACD+++MNQILREKFVELY+MPILENLLESFQ S
Sbjct: 721  HMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTS 780

Query: 2980 YPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            +PT TFPPLP+RGNF+L EVLESPYFFN
Sbjct: 781  HPTLTFPPLPDRGNFDLREVLESPYFFN 808


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1270 bits (3287), Expect = 0.0
 Identities = 614/874 (70%), Positives = 735/874 (84%), Gaps = 2/874 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEY 624
            RIF+QDPPW+ +LF KGL +                 YNLLRRRQIKAETEAWE MVEEY
Sbjct: 103  RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEY 162

Query: 625  REFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPAD 804
            +E  +EM EKKLAPNLP VK  FLGWFEPLK AIE+EQK QRS+KQKA F  HI++L AD
Sbjct: 163  KELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSAD 222

Query: 805  KMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTK-NLRKNASDM 981
            KMAVIVM+KMM LLM+  + GCV++VQAA+QIG AIEQE++I + LEK + N R      
Sbjct: 223  KMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRAD 282

Query: 982  PKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAY 1161
             + L KEKE+               E  +L+  E+ K+W +DTQAKLGSRLIELLIE+A+
Sbjct: 283  TECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAF 342

Query: 1162 VQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVI 1341
            +Q P SQSAD+ PD++PAF H FK +    GQ  VK+YGV+ECDP+VL G+DR+A++M+I
Sbjct: 343  IQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLI 402

Query: 1342 PYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGI 1521
            PY+PML+PPK W+GYDKGG+ FLPSYVMRTHGS +QQ+AM+    +QMQKVFEAL+ LG 
Sbjct: 403  PYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGS 462

Query: 1522 TKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKIN 1701
            TKWR+NR VL VVESLWA GGN AGLV+ +DVP+PEKPL  D TE+  W+WS++KAKKIN
Sbjct: 463  TKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKIN 521

Query: 1702 RERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 1881
            +E H+ RCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA
Sbjct: 522  QELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 581

Query: 1882 EGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLT 2061
            EGR LG+SGLHWLKIHLAN+YAGGV+KLSY+ R+AFV++HL  IFDSASNP+ G+RWWLT
Sbjct: 582  EGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLT 641

Query: 2062 AEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLV 2241
            AEDPFQCLAAC++LS AL SS+PH+ IS LPIHQDGSCNGLQHYAALGRD+ EAAAVNLV
Sbjct: 642  AEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLV 701

Query: 2242 AGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGV 2421
            AGEKPADVYS+IAARV  IM  D+ KDP TNPNA LAK+L+DQVDRKLVKQTVMTSVYGV
Sbjct: 702  AGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGV 761

Query: 2422 TFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKV 2601
            T++GAREQIKRRLEEK LI+DDRL F A+CY+AKVT+SALG++F+AAR IM WLGDCAKV
Sbjct: 762  TYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKV 821

Query: 2602 VAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYV 2781
            +A +N+PVRWTTPLGLPV+QPY K++RHLI+TSLQVLALQ+EG+ ++V+KQRTAFPPN+V
Sbjct: 822  IAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFV 881

Query: 2782 HSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENLL 2961
            HSLDG+HMM+TA+ACR+AGL+FAGVHDSFWTHACD+++MN ILREKFVELY+MP+LE+LL
Sbjct: 882  HSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLL 941

Query: 2962 ESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            E F+ +YP  TFP LP RG+F+L+EVL+SPYFFN
Sbjct: 942  EGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1268 bits (3280), Expect = 0.0
 Identities = 613/874 (70%), Positives = 734/874 (83%), Gaps = 2/874 (0%)
 Frame = +1

Query: 448  RIFMQDPPWVNALFTKGLCEG-NNGXXXXXXXXXXXXYNLLRRRQIKAETEAWENMVEEY 624
            RIF+QDPPW+ +LF KGL +                 YNLLRRRQIKAETEAWE MVEEY
Sbjct: 103  RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEY 162

Query: 625  REFVKEMREKKLAPNLPQVKAFFLGWFEPLKKAIEKEQKLQRSRKQKAVFGFHIDMLPAD 804
            +E  +EM EKKLAPNLP VK  FLGWFEPLK AIE+EQK QRS+KQKA F  HI++L AD
Sbjct: 163  KELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSAD 222

Query: 805  KMAVIVMHKMMALLMVGDEPGCVRLVQAALQIGAAIEQEIKIHNFLEKTK-NLRKNASDM 981
            KMA IVM+KMM LLM+  + GCV++VQAA+QIG AIEQE++I + LEK + N R      
Sbjct: 223  KMAGIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRAD 282

Query: 982  PKDLLKEKEIQXXXXXXXXXXXXXFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAY 1161
             + L KEKE+               E  +L+  E+ K+W +DTQAKLGSRLIELLIE+A+
Sbjct: 283  TECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAF 342

Query: 1162 VQHPTSQSADNTPDVQPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARYMVI 1341
            +Q P SQSAD+ PD++PAF H FK +    GQ  VK+YGV+ECDP+VL G+DR+A++M+I
Sbjct: 343  IQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLI 402

Query: 1342 PYVPMLIPPKNWRGYDKGGYLFLPSYVMRTHGSRKQQEAMRKTPPQQMQKVFEALNTLGI 1521
            PY+PML+PPK W+GYDKGG+ FLPSYVMRTHGS +QQ+AM+    +QMQKVFEAL+ LG 
Sbjct: 403  PYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGS 462

Query: 1522 TKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPTEIDTWKWSVRKAKKIN 1701
            TKWR+NR VL VVESLWA GGN AGLV+ +DVP+PEKPL  D TE+  W+WS++KAKKIN
Sbjct: 463  TKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKIN 521

Query: 1702 RERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 1881
            +E H+ RCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA
Sbjct: 522  QELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 581

Query: 1882 EGRSLGESGLHWLKIHLANVYAGGVDKLSYEARVAFVENHLAEIFDSASNPIYGNRWWLT 2061
            EGR LG+SGLHWLKIHLAN+YAGGV+KLSY+ R+AFV++HL  IFDSASNP+ G+RWWLT
Sbjct: 582  EGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLT 641

Query: 2062 AEDPFQCLAACIDLSGALNSSSPHSFISNLPIHQDGSCNGLQHYAALGRDSKEAAAVNLV 2241
            AEDPFQCLAAC++LS AL SS+PH+ IS LPIHQDGSCNGLQHYAALGRD+ EAAAVNLV
Sbjct: 642  AEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLV 701

Query: 2242 AGEKPADVYSDIAARVREIMEEDSRKDPETNPNALLAKVLLDQVDRKLVKQTVMTSVYGV 2421
            AGEKPADVYS+IAARV  IM  D+ KDP TNPNA LAK+L+DQVDRKLVKQTVMTSVYGV
Sbjct: 702  AGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGV 761

Query: 2422 TFVGAREQIKRRLEEKDLITDDRLLFTAACYSAKVTMSALGQLFQAARSIMDWLGDCAKV 2601
            T++GAREQIKRRLEEK LI+DDRL F A+CY+AKVT+SALG++F+AAR IM WLGDCAKV
Sbjct: 762  TYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKV 821

Query: 2602 VAAENEPVRWTTPLGLPVIQPYCKNKRHLIKTSLQVLALQKEGDGIEVKKQRTAFPPNYV 2781
            +A +N+PVRWTTPLGLPV+QPY K++RHLI+TSLQVLALQ+EG+ ++V+KQRTAFPPN+V
Sbjct: 822  IAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFV 881

Query: 2782 HSLDGTHMMMTAVACREAGLQFAGVHDSFWTHACDIEQMNQILREKFVELYNMPILENLL 2961
            HSLDG+HMM+TA+ACR+AGL+FAGVHDSFWTHACD+++MN ILREKFVELY+MP+LE+LL
Sbjct: 882  HSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLL 941

Query: 2962 ESFQASYPTSTFPPLPERGNFNLEEVLESPYFFN 3063
            E F+ +YP  TFP LP RG+F+L+EVL+SPYFFN
Sbjct: 942  EGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975