BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00018847
         (2273 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1177   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   917   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   915   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   899   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   894   0.0  
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...   891   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   891   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   886   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   882   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   879   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   874   0.0  
ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Caps...   874   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...   873   0.0  
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...   872   0.0  
ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thal...   868   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   868   0.0  
dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA pol...   868   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...   867   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   867   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   866   0.0  

>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1177 bits (3044), Expect = 0.0
 Identities = 583/691 (84%), Positives = 626/691 (90%), Gaps = 7/691 (1%)
 Frame = +1

Query: 220  KNTQRTHLSLVIPLPNTHLRIXXXXXXXXXXXXXXXXXXXXXX----KVSKNSFYQPSLS 387
            K ++ TH SL IPL +  LRI                          K+ K SF+QPS  
Sbjct: 28   KASKTTHFSLFIPLSSKQLRIEHPLFPSSSSSSNSFPSTLSLPSLTPKLGKTSFFQPSPQ 87

Query: 388  SQIIL---EEDLAEKDDGQFPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGLCESNTGLR 558
            SQIIL   EE+LAEK DG F NS K+K     + RIFMQD PWVN+LFMKGL +SNTGLR
Sbjct: 88   SQIILDSPEEELAEKMDGHFRNSDKIKG----SSRIFMQDPPWVNTLFMKGLVDSNTGLR 143

Query: 559  LEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKALFLGWF 738
            LEFKEIEREKYNLLRRRQIKAETEAWE+MVEEYREFV+EMR+KKLAPNLPQVKALFLGWF
Sbjct: 144  LEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWF 203

Query: 739  EPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPADKMAVIVMHKMMALLMVGNEAGCVRLVQ 918
            EPLKKAIEKEQK QRSRKQ+AIYGYHIDMLPADKMAVIVMHKMM+LLMVGN+AGCVRLVQ
Sbjct: 204  EPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMVGNDAGCVRLVQ 263

Query: 919  AALQIGAAIEQEIKIHSFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEAA 1098
            AALQIG AIEQEIKIHSFLEKTKN+RKNAS +PEDLLKEKEIQRNRVKSL+KRKRLFEAA
Sbjct: 264  AALQIGTAIEQEIKIHSFLEKTKNIRKNASDLPEDLLKEKEIQRNRVKSLIKRKRLFEAA 323

Query: 1099 RLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILTN 1278
            +LVTSED KSWSQDTQAKLGSRLIELLI+TAY+QHPTSQSAD PPDVRPAFRHKFKIL N
Sbjct: 324  KLVTSEDSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNN 383

Query: 1279 ELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPYVPMLIPPKNWRGYDKGGYLFLPSFVM 1458
            ELGQQ+VKRYGVIECDPLVLKGIDRSAR+M+IPYVPMLIPPKNW+GYDKGGYLFLPS+VM
Sbjct: 384  ELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVM 443

Query: 1459 RTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVN 1638
            RTHGS+KQQ+AMRKTPPQQMQKVFEALNTLG TKWRINRKVLGVVE+LWASGGNI GLVN
Sbjct: 444  RTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIGGLVN 503

Query: 1639 CEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYY 1818
            C+DVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCD+ELK+SVAQKM+DEEGFYY
Sbjct: 504  CDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEEGFYY 563

Query: 1819 PHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDKL 1998
            PHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA GRPLG++GL WLKIHLANVYAGGVDKL
Sbjct: 564  PHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKL 623

Query: 1999 SYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFIS 2178
            SYEAR AFVEN+L E+FDSA+NPI GNRWWL+AEDPFQCLAACIDL+GALNSSSPH+FIS
Sbjct: 624  SYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFIS 683

Query: 2179 HLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            +LPIHQDGSCNGLQHYAALGRDSKEAAAVNL
Sbjct: 684  YLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 714


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  917 bits (2369), Expect = 0.0
 Identities = 444/618 (71%), Positives = 527/618 (85%), Gaps = 5/618 (0%)
 Frame = +1

Query: 433  QFPNSAKVKNEIQLNGRIFMQDSPWVNSLFMKGLCESN--TG--LRLEFKEIEREKYNLL 600
            Q  ++ +VK  I    RIF+QD PW++S      CE N  TG  ++LEF+E ER  Y LL
Sbjct: 90   QDSSNIQVKESIP---RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLL 146

Query: 601  RRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQ 780
            RRRQ+KAETEAWE MVEEYRE  +EM EKKLAPNLP VKALFLGWFEPL++AI+KEQ+ Q
Sbjct: 147  RRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQ 206

Query: 781  RSRKQQAIYGYHIDMLPADKMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIK 960
            R++KQ+A Y  HI++LPADKMAVIVMHKMM L+M+G+E GCVR+VQAA+QIG AIEQE++
Sbjct: 207  RTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVR 266

Query: 961  IHSFLEKTKNLRKNAS-GMPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQ 1137
            IHSFLEKTKN  ++ + G  ++ L+EKEI R RVKS +++K++ E  +LV +E+I  W +
Sbjct: 267  IHSFLEKTKNFERHKTVGHSQEGLREKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGR 326

Query: 1138 DTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVI 1317
            DTQAKLGSRLIELL ETAYVQ P +QSAD PPDVRPAFRH FK +T E GQ+  ++YGVI
Sbjct: 327  DTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVI 386

Query: 1318 ECDPLVLKGIDRSARFMVIPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMR 1497
            ECDPLVL G+DR+A+ MVIPYVPMLIPPK W+GYDKGGYLFLPS+VMRTHGS+KQQ+A++
Sbjct: 387  ECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVK 446

Query: 1498 KTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTE 1677
              P +Q+QKVFEAL+TLG TKWRINR+VL VVES+WA GGN+ GLV+ E+VPLPEKP TE
Sbjct: 447  SVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTE 506

Query: 1678 DPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPM 1857
            D  EI  WKW+ RKAKKIN+ERH+LRCD E+KLSVA+KM+DEEGFYYPHNLDFRGRAYPM
Sbjct: 507  DLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPM 566

Query: 1858 HPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNL 2037
            HPHLNHLSSDLCRGVLEFAEGRPLG+SGLRWLKI LAN+YAGGV+KLSY+ R+AFV+N+L
Sbjct: 567  HPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHL 626

Query: 2038 AEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGL 2217
             ++FDSA NP+ GNRWWLTAEDPFQCLAACI+LS AL SSSPHT ISHLPIHQDGSCNGL
Sbjct: 627  DDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGL 686

Query: 2218 QHYAALGRDSKEAAAVNL 2271
            QHYAALGR+S EA+AVNL
Sbjct: 687  QHYAALGRNSLEASAVNL 704


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  915 bits (2364), Expect = 0.0
 Identities = 440/600 (73%), Positives = 518/600 (86%), Gaps = 3/600 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            RIF+QD PW+ SLF+KG+ + +N  L+LE KEIER  YN+LRRRQIKAETEAWE MV+EY
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEY 161

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPAD 837
            ++  K MREKKLAPNLP VKALFLGWFEPL++AI +EQK Q+++K +A +  HID+LPAD
Sbjct: 162  KDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPAD 221

Query: 838  KMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNASGMP 1017
            KMA+IVMHKMM L+MVGN+ GCV++VQAA+ IG AIEQE++IHSFLEKTKNL+K  +G+ 
Sbjct: 222  KMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVA 281

Query: 1018 ED--LLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1191
            ++  L KEKEI R RV  L++RKRL E  +L+  E++K W +D QAKLGSRLIELL ETA
Sbjct: 282  DEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETA 341

Query: 1192 YVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMV 1371
            YVQ P SQ AD+PPDVRPAFRH+FK +    GQ++VK YGVIECDPLVL G+D++A+ M+
Sbjct: 342  YVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHML 401

Query: 1372 IPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLG 1551
            IPYVPML+PPK W+GYDKGG+LFLPS+VMRTHGS+KQ +AMR     QMQKVFEAL+ LG
Sbjct: 402  IPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLG 461

Query: 1552 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 1731
             TKWR+N+KVL VVES+WA GGNIAGLVN EDVP+P+K  +ED  EI  WKWSVRKAKKI
Sbjct: 462  STKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKI 521

Query: 1732 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1911
            N+ERH+ RCD ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF
Sbjct: 522  NQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 581

Query: 1912 AEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWL 2091
            AEGRPLG+SGLRWLKIHLAN+YAGGV+KLSYE R+AFV+N++ +IFDSA+NP+ GNRWWL
Sbjct: 582  AEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWL 641

Query: 2092 TAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            TAEDP QCLAACI+LS ALNS SPHT ISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 642  TAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNL 701


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  899 bits (2323), Expect = 0.0
 Identities = 443/657 (67%), Positives = 534/657 (81%), Gaps = 18/657 (2%)
 Frame = +1

Query: 355  SKNSFYQPSLSSQIILEEDLAEKDDG-QF-PNSAKVKNEIQLN-------------GRIF 489
            S + F++PSLSS       L    D  QF P +  V++ +  N              RIF
Sbjct: 42   SNSLFFKPSLSSSTHFPLSLRPPPDPIQFHPLNDSVQDNLVENLENSIKFQVPISEPRIF 101

Query: 490  MQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREF 666
            +QD PW+ SLF+KG+ +  N  L++E KEI+R KYNLLRRRQIKAETEAWE MVE+Y++ 
Sbjct: 102  IQDPPWIASLFLKGMFKKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDL 161

Query: 667  VKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPADKMA 846
             + MREKKLAP+LP VKALFLGWFEPL++AI KEQK Q+++K +  +  HID+LPADKMA
Sbjct: 162  ERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMA 221

Query: 847  VIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNL-RKNASGMPED 1023
            +IVMHK+M L+M+GN+ GCV++VQAA+ IG AIEQE++IHSFLEK+K+L RK  S   ED
Sbjct: 222  LIVMHKLMGLVMMGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADED 281

Query: 1024 -LLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQ 1200
             L KEKEI R RV  L++RKRL E  +L+  ED+K W +DTQAKLGSRLIELL ETA+VQ
Sbjct: 282  GLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLTETAHVQ 341

Query: 1201 HPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPY 1380
             P  Q AD PPDVRPAFRH+ K      GQ++VK YGVIECDPLVL G+D++A+ M+IPY
Sbjct: 342  PPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPY 401

Query: 1381 VPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITK 1560
            VPML+PPK W+GYDKGG+LFLPS+VMRTHGS+KQ + MR    +QMQKVFEAL+ LG TK
Sbjct: 402  VPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTK 461

Query: 1561 WRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRE 1740
            WRIN+KVL VVES+WA GGNIAGLV+ EDVP+PEKP +EDP EI  W+WS RKAKK+N+E
Sbjct: 462  WRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQE 521

Query: 1741 RHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG 1920
            RH+ RCD ELKLSVA++M+DE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG
Sbjct: 522  RHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG 581

Query: 1921 RPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAE 2100
            RPLG+SGLRWLKIHLAN+Y+GGV+KLSY+ R++FV+N++ +IFDSA+NP+ GNRWWLTAE
Sbjct: 582  RPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAE 641

Query: 2101 DPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            DP QCLAACI+LS ALNS SPHT ISHLPIHQDGSCNGLQHYAALGRD+ EAAAVNL
Sbjct: 642  DPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 698


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score =  894 bits (2309), Expect = 0.0
 Identities = 425/600 (70%), Positives = 514/600 (85%), Gaps = 3/600 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            ++F+QD PW+++ F KG+ + +N  +++EFK+IE+ KYNLLRRRQI+ ETEAWE M +EY
Sbjct: 8    KVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEY 67

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPAD 837
            R  V+EM E+KLAPNLP VK L LGWFEPLK+AIEKEQK+++S+KQ++ +  +I++LPAD
Sbjct: 68   RGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPAD 127

Query: 838  KMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNL--RKNASG 1011
            KMAVIVMHKMM LLMVG+E GCVR+VQAA+QIG AIEQE++IH+FLEKTKN   +K    
Sbjct: 128  KMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTMHE 187

Query: 1012 MPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1191
            + E + KEKE+ R RV SL++RKRL E   LV  ++ K WS+ TQAKLGSRLIELL ETA
Sbjct: 188  VQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETA 247

Query: 1192 YVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMV 1371
            YVQ P +QS D PPDVRPAFRH FK LT   GQ++VK+YGVIECDPL+L G+D +A+ M+
Sbjct: 248  YVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHML 307

Query: 1372 IPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLG 1551
            IPY PML+PPK W+GYDKGG+LFLPS+VMRTHGS++QQ A+R  P +QMQKVFEAL+TLG
Sbjct: 308  IPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLG 367

Query: 1552 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 1731
             TKWR+NR++L VVE +W SGGNIAGLV+ ED+P+PEKP ++D  EI  WKWSVRKAKKI
Sbjct: 368  NTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKI 427

Query: 1732 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1911
            N+ERH+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF
Sbjct: 428  NQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEF 487

Query: 1912 AEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWL 2091
             EGRPLG+SGLRWLKIHLAN+Y+GGV+KLS++ R+AFVEN+L+EIFDSA NP+ G RWWL
Sbjct: 488  EEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWL 547

Query: 2092 TAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
             AEDPFQCLAACI+LS ALNS+SPHT ISHLPIHQDGSCNGLQHYAALGRD+ EAAAVNL
Sbjct: 548  KAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 607


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score =  891 bits (2302), Expect = 0.0
 Identities = 426/601 (70%), Positives = 514/601 (85%), Gaps = 4/601 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            R+F+QD PW+++LF+KGL + +N  +++E KEIE+ KYNLLRRRQ+K ETEAWE MVEEY
Sbjct: 103  RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLP 831
            RE  +EM EKKLAPNLP VK LFLGWFEP+++AI +EQK+Q+  S+K +A Y  HI++LP
Sbjct: 163  RELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLP 222

Query: 832  ADKMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNL-RKNAS 1008
            ADKMAVIVMHKMM L+M   E G V++VQAA+ IG AIEQE++IH+FLEKTKN  RK  +
Sbjct: 223  ADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT 282

Query: 1009 GMPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIET 1188
               + L KEKEI + RV SL++R+RL E  +LV +E+IK W +D QAKLGSRL+ELL ET
Sbjct: 283  DEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTET 342

Query: 1189 AYVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFM 1368
            AYVQ P  QS D+PPDV+PAFRHKFK ++ + G++M+KRYGVIECDPL+L G+DRSA+ M
Sbjct: 343  AYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHM 402

Query: 1369 VIPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTL 1548
            +IPYVPML+PPK W+GYDKGGYLFLPS+VMRTHGS+KQQ+A++    ++MQKVFEAL+TL
Sbjct: 403  LIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTL 462

Query: 1549 GITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKK 1728
            G TKWR+N+KVL VVES+WASGGNIAGLV+  D+P+PEKP +ED  E   WKWSVRKA K
Sbjct: 463  GSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANK 522

Query: 1729 INRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 1908
            INRERH+ RCD ELKLSVA+KM +EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE
Sbjct: 523  INRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 582

Query: 1909 FAEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWW 2088
            FAEGRPLG SGL WLKIHLAN++AGGV+KLS++ R+AFV+N+L +IFDSA NPI GNRWW
Sbjct: 583  FAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWW 642

Query: 2089 LTAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVN 2268
            LTAEDPFQCLAACI+LS +L SSSPH+ +S+LPIHQDGSCNGLQHYAALGRDS EAAAVN
Sbjct: 643  LTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVN 702

Query: 2269 L 2271
            L
Sbjct: 703  L 703


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  891 bits (2302), Expect = 0.0
 Identities = 426/601 (70%), Positives = 514/601 (85%), Gaps = 4/601 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            R+F+QD PW+++LF+KGL + +N  +++E KEIE+ KYNLLRRRQ+K ETEAWE MVEEY
Sbjct: 103  RLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEY 162

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLP 831
            RE  +EM EKKLAPNLP VK LFLGWFEP+++AI +EQK+Q+  S+K +A Y  HI++LP
Sbjct: 163  RELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLP 222

Query: 832  ADKMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNL-RKNAS 1008
            ADKMAVIVMHKMM L+M   E G V++VQAA+ IG AIEQE++IH+FLEKTKN  RK  +
Sbjct: 223  ADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTT 282

Query: 1009 GMPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIET 1188
               + L KEKEI + RV SL++R+RL E  +LV +E+IK W +D QAKLGSRL+ELL ET
Sbjct: 283  DEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTET 342

Query: 1189 AYVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFM 1368
            AYVQ P  QS D+PPDV+PAFRHKFK ++ + G++M+KRYGVIECDPL+L G+DRSA+ M
Sbjct: 343  AYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHM 402

Query: 1369 VIPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTL 1548
            +IPYVPML+PPK W+GYDKGGYLFLPS+VMRTHGS+KQQ+A++    ++MQKVFEAL+TL
Sbjct: 403  LIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTL 462

Query: 1549 GITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKK 1728
            G TKWR+N+KVL VVES+WASGGNIAGLV+  D+P+PEKP +ED  E   WKWSVRKA K
Sbjct: 463  GSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANK 522

Query: 1729 INRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 1908
            INRERH+ RCD ELKLSVA+KM +EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE
Sbjct: 523  INRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLE 582

Query: 1909 FAEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWW 2088
            FAEGRPLG SGL WLKIHLAN++AGGV+KLS++ R+AFV+N+L +IFDSA NPI GNRWW
Sbjct: 583  FAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWW 642

Query: 2089 LTAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVN 2268
            LTAEDPFQCLAACI+LS +L SSSPH+ +S+LPIHQDGSCNGLQHYAALGRDS EAAAVN
Sbjct: 643  LTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVN 702

Query: 2269 L 2271
            L
Sbjct: 703  L 703


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  886 bits (2289), Expect = 0.0
 Identities = 425/600 (70%), Positives = 511/600 (85%), Gaps = 3/600 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCE-SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            R+F++DSPW+++L+ KG  + +N  ++LE K+IE+ KYNLLRRRQI+ ETEAWE M EEY
Sbjct: 108  RVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEY 167

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPAD 837
               VKEM E+KLAPNLP VK+LFLGWFEPLK+AIE+EQKL++S+KQ++ +  +I++LPAD
Sbjct: 168  TGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPAD 227

Query: 838  KMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKN--LRKNASG 1011
            KMAVIVMHKMM L+MVG+E GCVR+VQAA+QIG AIEQE++IH+FLEKTKN   +K    
Sbjct: 228  KMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHD 287

Query: 1012 MPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1191
            + E + KEKE+ R RV SL++RKRL E   LV  ++ K W++D QAKLGSRLIELL ETA
Sbjct: 288  VQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLTETA 347

Query: 1192 YVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMV 1371
            YVQ P  QS   PPDVRPAFRH FK +T   GQ+ VK+YGVIECDPL+L G+D +A+ M+
Sbjct: 348  YVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHML 407

Query: 1372 IPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLG 1551
            IPY PML+PPK WRGYDKGG+LFLPS++MRTHGS++QQ+A+R  P +QMQKVFEAL+TLG
Sbjct: 408  IPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLG 467

Query: 1552 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 1731
             TKWR+N KVL VVE +WASGGN AGLVN  D+P+PEK  ++D  EI  WKWSVRKAKKI
Sbjct: 468  NTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKI 527

Query: 1732 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1911
            N+ERH+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRGVLEF
Sbjct: 528  NQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEF 587

Query: 1912 AEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWL 2091
            AEGRPLG+SGL WLKIHLAN+Y+GGV+KLS++ R+AFVEN+L+EIFDSA NP+ G RWWL
Sbjct: 588  AEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWL 647

Query: 2092 TAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            TAEDPFQCLAACI+LS AL S+SPHT ISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL
Sbjct: 648  TAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNL 707


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  882 bits (2280), Expect = 0.0
 Identities = 419/600 (69%), Positives = 514/600 (85%), Gaps = 3/600 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCESNTGLRL-EFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            RIF+QD PW +S+F+KGL +    ++L E++E+++ K+NLLRRRQ+K ETEAWE MV+EY
Sbjct: 138  RIFVQDPPWFSSIFLKGLYKR---IKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEY 194

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPAD 837
            +E   +M EK+LAPNLP +K LFLGWF PL++AIE+EQK+QR++KQ+A Y  HI++LPAD
Sbjct: 195  KELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIELLPAD 254

Query: 838  KMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNA--SG 1011
            K+AVIVMHKMM L+M G+E  CV++VQAA+ IG AIEQEI+IHSFLEKTKN ++    + 
Sbjct: 255  KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 314

Query: 1012 MPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1191
              E L KEKE+ R RV SL+K KR+ EA +L+ +E+ K W +DTQAKLGSRL+ELLIETA
Sbjct: 315  TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA 374

Query: 1192 YVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMV 1371
            YVQHP + +  +PPDVRPAFRH+FK +    GQ+  KRYGV+ECDPLVL G+DRSA+ M+
Sbjct: 375  YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDRSAKHML 434

Query: 1372 IPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLG 1551
            IPYVPML+PPK W+GY+KGGYLFLPS+VMRTHGS+KQQEA++      M+KVFEAL+TLG
Sbjct: 435  IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 494

Query: 1552 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 1731
             TKWR+N++VL V+ES+W SGGNIAGLV+  DVP+PEKPL+ED  E+  WKWSVRKAKKI
Sbjct: 495  STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKI 554

Query: 1732 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1911
            N+ERH+ RCD ELKLSVA++M+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEF
Sbjct: 555  NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 614

Query: 1912 AEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWL 2091
            AEGRPLG+SGLRWLKIHLAN+++GGV+KLS++ R+AFVEN+L EIFDSA NPI G+RWWL
Sbjct: 615  AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 674

Query: 2092 TAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            TAEDPFQCLAACI+LS AL SSSPH+ ISHLPIHQDGSCNGLQHYAALGR++ EAAAVNL
Sbjct: 675  TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 734


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  879 bits (2271), Expect = 0.0
 Identities = 418/600 (69%), Positives = 513/600 (85%), Gaps = 3/600 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCESNTGLRL-EFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            RIF+QD PW +S+F+KGL +    ++L E++E+++ K+NLLRRRQ+K ETEAWE MV+EY
Sbjct: 141  RIFVQDPPWFSSIFLKGLYKR---IKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEY 197

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPAD 837
            +E   +M EK+LAPNLP +K LFLGWF PL +AIE+EQK+QR++KQ+A Y  HI++LPAD
Sbjct: 198  KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPAD 257

Query: 838  KMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNA--SG 1011
            KMAVIVMHKMM L+M G+E  CV++VQAA+ IG AIEQEI+IHSFLEKTKN ++    + 
Sbjct: 258  KMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317

Query: 1012 MPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETA 1191
              E L KEKE+ R RV SL+K KR+ EA +L+ +E+ K W +DTQAKLGSRL+ELLIETA
Sbjct: 318  TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377

Query: 1192 YVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMV 1371
            YVQHP + +  +PPDVRPAFRH+FK +    GQ+  KRYGV+ECDPLVL+G+DRSA+ M+
Sbjct: 378  YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437

Query: 1372 IPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLG 1551
            IPYVPML+PPK W+GY+KGGYLFLPS+VMRTHGS+KQQEA++      M+KVFEAL+TLG
Sbjct: 438  IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497

Query: 1552 ITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 1731
             TKWR+N++VL V+ES+W SGGNIAGLV+  DV +PEKPL+ED  E+  WKWSVRKAKKI
Sbjct: 498  STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557

Query: 1732 NRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 1911
            N+ERH+ RCD ELKLSVA++M+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEF
Sbjct: 558  NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617

Query: 1912 AEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWL 2091
            AEGRPLG+SGLRWLKIHLAN+++GGV+KLS++ R+AFVEN+L EIFDSA NPI G+RWWL
Sbjct: 618  AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677

Query: 2092 TAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            TAEDPFQCLAACI+L+ AL SSSPH+ ISHLPIHQDGSCNGLQHYAALGR++ EAAAVNL
Sbjct: 678  TAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  874 bits (2259), Expect = 0.0
 Identities = 421/606 (69%), Positives = 508/606 (83%), Gaps = 7/606 (1%)
 Frame = +1

Query: 475  NGRIFMQDSPWVNSLFMKGL---CESNTGLRLEFKEIEREK-YNLLRRRQIKAETEAWEN 642
            N R+F+QD PWV+SLFM  L    +   G+R EF+EIER + Y +LRRRQIKAETEAWE 
Sbjct: 97   NKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQ 156

Query: 643  MVEEYREFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHID 822
            MVEEYRE  +EM EKKLAPNLP VK L LGWFEPL++AIEKEQ  + + K +A +  HID
Sbjct: 157  MVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHID 216

Query: 823  MLPADKMAVIVMHKMMALLMVGN-EAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRK 999
             LPADKMAVIVMHK+M LLM+G  E  CV++VQAA+QIG A+E E++IH+FLEKTK L+K
Sbjct: 217  SLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQK 276

Query: 1000 NASGMP--EDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIE 1173
            + +G    ED+ KE  I R RVKSL+KR R+ E  +L+ SE+ +SW +DTQAKLG RL+E
Sbjct: 277  HMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLE 336

Query: 1174 LLIETAYVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDR 1353
            LL ETAYVQ P  QSAD PPD+RPAFRH FKI T + G+ +VK+YGVIECDPLV+ G+DR
Sbjct: 337  LLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDR 396

Query: 1354 SARFMVIPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFE 1533
            + + M+IPYVPML+PPK WRGYDKGGYLFLPS++MRTHGS++QQ+A+R  P +QMQ+V+E
Sbjct: 397  TVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYE 456

Query: 1534 ALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSV 1713
            AL+TLG TKWR+N+++L VVES+WA GGNIAGLV+ +DVP+PE   ++D  E+  WKW V
Sbjct: 457  ALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKV 516

Query: 1714 RKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 1893
            RK+KKIN+E H+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC
Sbjct: 517  RKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 576

Query: 1894 RGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIY 2073
            RG+LEFAEGRPLG+SGLRWLKIHLA++YAGGV+KL Y+AR+AFVEN++ +I DSA+NP+ 
Sbjct: 577  RGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLN 636

Query: 2074 GNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKE 2253
            GNRWWL AEDPFQCLAACI+LS AL SSSPHT ISHLPIHQDGSCNGLQHYAALGRDS E
Sbjct: 637  GNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSME 696

Query: 2254 AAAVNL 2271
            AAAVNL
Sbjct: 697  AAAVNL 702


>ref|XP_006296121.1| hypothetical protein CARUB_v10025273mg [Capsella rubella]
            gi|482564829|gb|EOA29019.1| hypothetical protein
            CARUB_v10025273mg [Capsella rubella]
          Length = 991

 Score =  874 bits (2259), Expect = 0.0
 Identities = 423/654 (64%), Positives = 530/654 (81%), Gaps = 18/654 (2%)
 Frame = +1

Query: 364  SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 498
            S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 66   SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 125

Query: 499  SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 675
             PW+++LF+KGL +  +  +++E K I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 126  PPWISALFLKGLSKMVDQTVKIEHKYIDKRKFDSLRRRQVKEETEAWEKMVDEYRDLEKE 185

Query: 676  MREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLPADKMAV 849
            M EK LAPNLP VK +FLGWF+PLK  IE+EQKLQ+  S+K +A Y  HI++LPADKMAV
Sbjct: 186  MCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAV 245

Query: 850  IVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNASGMPEDLL 1029
            IVMHKMM L+M G+E GC+++VQAA+ IG AIEQE++IH+FL++T   RKN +G  ++ L
Sbjct: 246  IVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEEL 302

Query: 1030 KEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPT 1209
            KEK++ R RV SL++RKR+ +A ++V SE IK W + TQAKLGSRL+ELLIETAYVQ P 
Sbjct: 303  KEKQLLRKRVNSLIRRKRIIDALKVVKSEGIKPWGRATQAKLGSRLLELLIETAYVQPPL 362

Query: 1210 SQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPYVPM 1389
            +QS D+ P+ RPAFRHKFK +T   G ++V+RYGVIECD L+L G+D+SA+ M+IPYVPM
Sbjct: 363  TQSGDSIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMIIPYVPM 422

Query: 1390 LIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRI 1569
            L+PPK W+GYDKGGYLFLPS++MRTHGSKKQQ+A+R    +   +VFEAL+TLG TKWR+
Sbjct: 423  LVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRVFEALDTLGNTKWRV 482

Query: 1570 NRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHA 1749
            NRK+L VVE LWA GGNIAGLVN EDVP+PEKP +EDP E+ +WKWSVRKA KINRERH+
Sbjct: 483  NRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSVRKANKINRERHS 542

Query: 1750 LRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 1929
            LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPL
Sbjct: 543  LRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPL 602

Query: 1930 GESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPF 2109
            G+SGL WLKIHLAN+YAGGV+KLS++AR+AFVE +L ++ DSA NPI+G RWWL AEDPF
Sbjct: 603  GKSGLHWLKIHLANLYAGGVEKLSHDARLAFVETHLDDVMDSAENPIHGKRWWLKAEDPF 662

Query: 2110 QCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            QCLAAC+ L+ AL S SP++ ISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 663  QCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 716


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score =  873 bits (2255), Expect = 0.0
 Identities = 418/615 (67%), Positives = 515/615 (83%), Gaps = 8/615 (1%)
 Frame = +1

Query: 451  KVKNEIQLNG-----RIFMQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQ 612
            +++N ++ NG     R+FMQD PW+++LF+KGL +  +  +++E K+I++ K++ LRRRQ
Sbjct: 107  ELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTVKIERKDIDKRKFDSLRRRQ 166

Query: 613  IKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--S 786
            +K ETEAWE MV+EYR+  KEM EK LAPNLP VK +FLGWF+PLK  IE+EQKLQ+  S
Sbjct: 167  VKEETEAWEKMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKS 226

Query: 787  RKQQAIYGYHIDMLPADKMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIH 966
            +K +A Y  HI++LPADKMAVIVMHKMM L+M G+E GC+++VQAA+ IG AIEQE++IH
Sbjct: 227  KKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIH 286

Query: 967  SFLEKTKNLRKNASGMPEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQ 1146
            +FL++T   RKN +G  E+ LK+K++ R RV SL++RKR+ +A ++V SE IK W + TQ
Sbjct: 287  NFLKRT---RKNNAGDSEEELKDKQLLRKRVNSLIRRKRIIDALKVVKSEGIKPWGRATQ 343

Query: 1147 AKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECD 1326
            AKLGSRL+ELLIETAYVQ P +Q+ D  P+ RPAFRHKFK +T   G ++V+RYGVIECD
Sbjct: 344  AKLGSRLLELLIETAYVQPPLTQAGDTIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECD 403

Query: 1327 PLVLKGIDRSARFMVIPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTP 1506
             L+L G+D+SA+ M+IPYVPML+PPK W+GYDKGGYLFLPS++MRTHGSKKQQ+A+R   
Sbjct: 404  SLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDIS 463

Query: 1507 PQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPA 1686
             +   +VFEAL+TLG TKWR+NRK+L VVE LWA GGNIAGLVN EDVP+PEKP +EDP 
Sbjct: 464  SKTAHRVFEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPE 523

Query: 1687 EIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPH 1866
            EI +WKWSVRKA KINRERH+LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPH
Sbjct: 524  EIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPH 583

Query: 1867 LNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEI 2046
            LNHLSSDLCRG LEFAEGRPLG+SGL WLKIHLAN+YAGGV+KLS++ R+AFVEN+L  I
Sbjct: 584  LNHLSSDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDNI 643

Query: 2047 FDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHY 2226
             DSA NPI+G RWWL AEDPFQCLAAC+ L+ AL S SP++ ISHLPIHQDGSCNGLQHY
Sbjct: 644  MDSAENPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHY 703

Query: 2227 AALGRDSKEAAAVNL 2271
            AALGRDS EAAAVNL
Sbjct: 704  AALGRDSFEAAAVNL 718


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
            gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 990

 Score =  872 bits (2252), Expect = 0.0
 Identities = 424/657 (64%), Positives = 530/657 (80%), Gaps = 18/657 (2%)
 Frame = +1

Query: 355  SKNSFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIF 489
            S  S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+F
Sbjct: 62   SSLSVHEKPISNSVHFHGNLIESFENQDSSYAGTINGASLIEELENPVERNGLSGRRRLF 121

Query: 490  MQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREF 666
            MQD PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+ 
Sbjct: 122  MQDPPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDL 181

Query: 667  VKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLPADK 840
             KEM EK LAPNLP VK +FLGWF+PLK  IE+EQKLQ+  S+K +A Y  HI++LPADK
Sbjct: 182  EKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADK 241

Query: 841  MAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNASGMPE 1020
            MAVIVMHKMM L+M G+E GC+++VQAA+ IG AIEQE++IH+FL++T   RKN +G  +
Sbjct: 242  MAVIVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQ 298

Query: 1021 DLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQ 1200
            + LKEK++ R RV SL++RKR+ +A ++V +E  K W + TQAKLGSRL+ELLIE AYVQ
Sbjct: 299  EELKEKQLLRKRVNSLIRRKRIIDALKVVKTEGTKPWGRATQAKLGSRLLELLIEAAYVQ 358

Query: 1201 HPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPY 1380
             P +QS D+ P+ RPAFRHKFK +T   G +MV+RYGVIECD L+L G+D+SA+ M+IPY
Sbjct: 359  PPLTQSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIECDSLLLAGLDKSAKHMLIPY 418

Query: 1381 VPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITK 1560
            VPML+PPK W+GYDKGGYLFLPS++MRTHGSKKQQ+A+R    +   +VFEAL+TLG TK
Sbjct: 419  VPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISHKTAHRVFEALDTLGNTK 478

Query: 1561 WRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRE 1740
            WR+NR +L VVE LWA GGNIAGLVN EDVP+PEKP +EDP EI +WKWSVRKA KINRE
Sbjct: 479  WRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRE 538

Query: 1741 RHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEG 1920
            RH+LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEG
Sbjct: 539  RHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEG 598

Query: 1921 RPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAE 2100
            RPLG+SGL WLKIHLAN++AGGV+KLS++AR+AFVEN+L +I DSA NPI+G RWWL AE
Sbjct: 599  RPLGKSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAE 658

Query: 2101 DPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            DPFQCLAAC+ L+ AL S SP++ ISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 659  DPFQCLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 715


>ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3
            [Arabidopsis thaliana]
          Length = 895

 Score =  868 bits (2243), Expect = 0.0
 Identities = 420/654 (64%), Positives = 528/654 (80%), Gaps = 18/654 (2%)
 Frame = +1

Query: 364  SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 498
            S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 68   SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 127

Query: 499  SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 675
             PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 128  PPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 676  MREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLPADKMAV 849
            M EK LAPNLP VK +FLGWF+PLK  IE+EQKLQ+  S+K +A Y  HI++LPADKMAV
Sbjct: 188  MCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAV 247

Query: 850  IVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNASGMPEDLL 1029
            IVMHKMM L+M G+E GC+++VQAA+ IG AIEQE++IH+FL++T   RKN +G  ++ L
Sbjct: 248  IVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEEL 304

Query: 1030 KEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPT 1209
            KEK++ R RV SL++RKR+ +A ++V SE  K W + TQAKLGSRL+ELLIE AYVQ P 
Sbjct: 305  KEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPL 364

Query: 1210 SQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPYVPM 1389
            +QS D+ P+ RPAFRH+FK +T   G ++V+RYGVIECD L+L G+D+SA+ M+IPYVPM
Sbjct: 365  TQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPM 424

Query: 1390 LIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRI 1569
            L+PPK W+GYDKGGYLFLPS++MRTHGSKKQQ+A++    +   +VFEAL+TLG TKWR+
Sbjct: 425  LVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRV 484

Query: 1570 NRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHA 1749
            NR +L VVE LWA GGNIAGLVN EDVP+PEKP +EDP E+ +WKWS RKA KINRERH+
Sbjct: 485  NRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHS 544

Query: 1750 LRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 1929
            LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPL
Sbjct: 545  LRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPL 604

Query: 1930 GESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPF 2109
            G+SGL WLKIHLAN+YAGGV+KLS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPF
Sbjct: 605  GKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPF 664

Query: 2110 QCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            QCLAAC+ L+ AL S SP++ ISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 665  QCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 718


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  868 bits (2243), Expect = 0.0
 Identities = 420/654 (64%), Positives = 528/654 (80%), Gaps = 18/654 (2%)
 Frame = +1

Query: 364  SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 498
            S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 68   SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 127

Query: 499  SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 675
             PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 128  PPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 676  MREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLPADKMAV 849
            M EK LAPNLP VK +FLGWF+PLK  IE+EQKLQ+  S+K +A Y  HI++LPADKMAV
Sbjct: 188  MCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAV 247

Query: 850  IVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNASGMPEDLL 1029
            IVMHKMM L+M G+E GC+++VQAA+ IG AIEQE++IH+FL++T   RKN +G  ++ L
Sbjct: 248  IVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEEL 304

Query: 1030 KEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPT 1209
            KEK++ R RV SL++RKR+ +A ++V SE  K W + TQAKLGSRL+ELLIE AYVQ P 
Sbjct: 305  KEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPL 364

Query: 1210 SQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPYVPM 1389
            +QS D+ P+ RPAFRH+FK +T   G ++V+RYGVIECD L+L G+D+SA+ M+IPYVPM
Sbjct: 365  TQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPM 424

Query: 1390 LIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRI 1569
            L+PPK W+GYDKGGYLFLPS++MRTHGSKKQQ+A++    +   +VFEAL+TLG TKWR+
Sbjct: 425  LVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRV 484

Query: 1570 NRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHA 1749
            NR +L VVE LWA GGNIAGLVN EDVP+PEKP +EDP E+ +WKWS RKA KINRERH+
Sbjct: 485  NRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHS 544

Query: 1750 LRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 1929
            LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPL
Sbjct: 545  LRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPL 604

Query: 1930 GESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPF 2109
            G+SGL WLKIHLAN+YAGGV+KLS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPF
Sbjct: 605  GKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPF 664

Query: 2110 QCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            QCLAAC+ L+ AL S SP++ ISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 665  QCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 718


>dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana]
          Length = 786

 Score =  868 bits (2243), Expect = 0.0
 Identities = 420/654 (64%), Positives = 528/654 (80%), Gaps = 18/654 (2%)
 Frame = +1

Query: 364  SFYQPSLSSQIILEEDLAEKDDGQFPNSA----------KVKNEIQLNG-----RIFMQD 498
            S ++  +S+ +    +L E  + Q  + A          +++N ++ NG     R+FMQD
Sbjct: 68   SVHEKPISNSVHFHGNLIESFENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQD 127

Query: 499  SPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKE 675
             PW+++LF+KGL +  +  L++E K+I++ K++ LRRRQ+K ETEAWE MV+EYR+  KE
Sbjct: 128  PPWISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 676  MREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLPADKMAV 849
            M EK LAPNLP VK +FLGWF+PLK  IE+EQKLQ+  S+K +A Y  HI++LPADKMAV
Sbjct: 188  MCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAV 247

Query: 850  IVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNLRKNASGMPEDLL 1029
            IVMHKMM L+M G+E GC+++VQAA+ IG AIEQE++IH+FL++T   RKN +G  ++ L
Sbjct: 248  IVMHKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT---RKNNAGDSQEEL 304

Query: 1030 KEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPT 1209
            KEK++ R RV SL++RKR+ +A ++V SE  K W + TQAKLGSRL+ELLIE AYVQ P 
Sbjct: 305  KEKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPL 364

Query: 1210 SQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPYVPM 1389
            +QS D+ P+ RPAFRH+FK +T   G ++V+RYGVIECD L+L G+D+SA+ M+IPYVPM
Sbjct: 365  TQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPM 424

Query: 1390 LIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRI 1569
            L+PPK W+GYDKGGYLFLPS++MRTHGSKKQQ+A++    +   +VFEAL+TLG TKWR+
Sbjct: 425  LVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRV 484

Query: 1570 NRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHA 1749
            NR +L VVE LWA GGNIAGLVN EDVP+PEKP +EDP E+ +WKWS RKA KINRERH+
Sbjct: 485  NRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHS 544

Query: 1750 LRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 1929
            LRCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPL
Sbjct: 545  LRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPL 604

Query: 1930 GESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPF 2109
            G+SGL WLKIHLAN+YAGGV+KLS++AR+AFVEN+L +I DSA NPI+G RWWL AEDPF
Sbjct: 605  GKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPF 664

Query: 2110 QCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            QCLAAC+ L+ AL S SP++ ISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 665  QCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL 718


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  867 bits (2241), Expect = 0.0
 Identities = 415/580 (71%), Positives = 496/580 (85%), Gaps = 3/580 (0%)
 Frame = +1

Query: 541  SNTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKA 720
            +N  +++E KEIE+ KYNLLRRRQ+K ETEAWE MVEEYRE  +EM EKKLAPNLP VK 
Sbjct: 2    TNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKG 61

Query: 721  LFLGWFEPLKKAIEKEQKLQR--SRKQQAIYGYHIDMLPADKMAVIVMHKMMALLMVGNE 894
            LFLGWFEP+++AI +EQK+Q+  S+K +A Y  HI++LPADKMAVIVMHKMM L+M   E
Sbjct: 62   LFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQE 121

Query: 895  AGCVRLVQAALQIGAAIEQEIKIHSFLEKTKNL-RKNASGMPEDLLKEKEIQRNRVKSLV 1071
             G V++VQAA+ IG AIEQE++IH+FLEKTKN  RK  +   + L KEKEI + RV SL+
Sbjct: 122  NGFVQVVQAAVHIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQGLSKEKEILKKRVNSLI 181

Query: 1072 KRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAF 1251
            +R+RL E  +LV +E+IK W +D QAKLGSRL+ELL ETAYVQ P  QS D+PPDV+PAF
Sbjct: 182  RRRRLVEVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAF 241

Query: 1252 RHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVIPYVPMLIPPKNWRGYDKGG 1431
            RHKFK ++ + G++M+KRYGVIECDPL+L G+DRSA+ M+IPYVPML+PPK W+GYDKGG
Sbjct: 242  RHKFKTISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGG 301

Query: 1432 YLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWAS 1611
            YLFLPS+VMRTHGS+KQQ+A++    ++MQKVFEAL+TLG TKWR+N+KVL VVES+WAS
Sbjct: 302  YLFLPSYVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWAS 361

Query: 1612 GGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQK 1791
            GGNIAGLV+  D+P+PEKP +ED  E   WKWSVRKA KINRERH+ RCD ELKLSVA+K
Sbjct: 362  GGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARK 421

Query: 1792 MRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLAN 1971
            M +EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG SGL WLKIHLAN
Sbjct: 422  MENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLAN 481

Query: 1972 VYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALN 2151
            ++AGGV+KLS++ R+AFV+N+L +IFDSA NPI GNRWWLTAEDPFQCLAACI+LS +L 
Sbjct: 482  LFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLK 541

Query: 2152 SSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            SSSPH+ +S+LPIHQDGSCNGLQHYAALGRDS EAAAVNL
Sbjct: 542  SSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNL 581


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  867 bits (2240), Expect = 0.0
 Identities = 420/620 (67%), Positives = 513/620 (82%), Gaps = 10/620 (1%)
 Frame = +1

Query: 442  NSAKVKNEI---QLNGRIFMQDSPWVNSLFMKGL---CESNTGLRLEFKEIEREK-YNLL 600
            N  K+ N +   + N R+F+QD PWV+SLFM  L    +   G+R EF+EIER + Y +L
Sbjct: 84   NLQKIANGVLTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAML 143

Query: 601  RRRQIKAETEAWENMVEEYREFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQ 780
            RRRQIKAETEAWE MVEEYRE  +EM EKKLAPNLP VK L LGWFEPL++AIEKEQ  +
Sbjct: 144  RRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAE 203

Query: 781  RSRKQQAIYGYHIDMLPADKMAVIVMHKMMALLMVGN-EAGCVRLVQAALQIGAAIEQEI 957
             + K +A +  HID LPADKMAVIVMHK+M LLM+G  E  CV++VQAA+QIG A+E E+
Sbjct: 204  TTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEV 263

Query: 958  KIHSFLEKTKNLRKNASGMP--EDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSW 1131
            +IH+FLEKTK L+K+ +G    ED+ +E  I R RVKSL+KR R+ E  +L+ SE+ +SW
Sbjct: 264  RIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESW 323

Query: 1132 SQDTQAKLGSRLIELLIETAYVQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYG 1311
             +DTQAKLG RL+ELL ETAYVQ P  QSAD PPD+RPAFRH F+I T + G+ +VK+YG
Sbjct: 324  GRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYG 383

Query: 1312 VIECDPLVLKGIDRSARFMVIPYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEA 1491
            VIECDPLV+ G+DR+ + M+IPYVPML+PPK WRGYDKGGYLFLPS++MRTHGS++QQ+A
Sbjct: 384  VIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDA 443

Query: 1492 MRKTPPQQMQKVFEALNTLGITKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPL 1671
            +R  P +QMQ+V+EAL+TLG TKWR+N+++L VVES+WA GGNIAGLV+ +DVP+PE   
Sbjct: 444  VRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH- 502

Query: 1672 TEDPAEIDTWKWSVRKAKKINRERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAY 1851
            ++D  E+  WKW VRK+KKIN+E H+ RCD ELKLSVA+K++DEEGFYYPHNLDFRGRAY
Sbjct: 503  SDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAY 562

Query: 1852 PMHPHLNHLSSDLCRGVLEFAEGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVEN 2031
            PMHPHLNHLSSDLCRG+LEFAEGRPLG+SGLRWLKIHLA++YAGG++KL Y+AR+AFVEN
Sbjct: 563  PMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVEN 622

Query: 2032 NLAEIFDSASNPIYGNRWWLTAEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCN 2211
            ++ +I DSA+NP+ GNRWWL AEDPFQCLAACI+LS AL SSSPHT  SHLPIHQDGSCN
Sbjct: 623  HIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCN 682

Query: 2212 GLQHYAALGRDSKEAAAVNL 2271
            GLQHYAALGRDS EAAAVNL
Sbjct: 683  GLQHYAALGRDSMEAAAVNL 702


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  866 bits (2238), Expect = 0.0
 Identities = 417/599 (69%), Positives = 503/599 (83%), Gaps = 2/599 (0%)
 Frame = +1

Query: 481  RIFMQDSPWVNSLFMKGLCES-NTGLRLEFKEIEREKYNLLRRRQIKAETEAWENMVEEY 657
            RIF+QD PW+ SLF+KGL +     ++LEF EIE+ KYNLLRRRQIKAETEAWE MVEEY
Sbjct: 103  RIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEY 162

Query: 658  REFVKEMREKKLAPNLPQVKALFLGWFEPLKKAIEKEQKLQRSRKQQAIYGYHIDMLPAD 837
            +E  +EM EKKLAPNLP VK LFLGWFEPLK AIE+EQK QRS+KQ+A +  HI++L AD
Sbjct: 163  KELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSAD 222

Query: 838  KMAVIVMHKMMALLMVGNEAGCVRLVQAALQIGAAIEQEIKIHSFLEKTK-NLRKNASGM 1014
            KMAVIVM+KMM LLM+  + GCV++VQAA+QIG AIEQE++I S LEK + N R      
Sbjct: 223  KMAVIVMYKMMGLLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRAD 282

Query: 1015 PEDLLKEKEIQRNRVKSLVKRKRLFEAARLVTSEDIKSWSQDTQAKLGSRLIELLIETAY 1194
             E L KEKE+ R +V  L++R++L E  +L+  E+ K+W +DTQAKLGSRLIELLIE+A+
Sbjct: 283  TECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAF 342

Query: 1195 VQHPTSQSADNPPDVRPAFRHKFKILTNELGQQMVKRYGVIECDPLVLKGIDRSARFMVI 1374
            +Q P SQSAD+PPD+RPAF H FK +    GQ  VK+YGV+ECDP+VL G+DR+A+ M+I
Sbjct: 343  IQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLI 402

Query: 1375 PYVPMLIPPKNWRGYDKGGYLFLPSFVMRTHGSKKQQEAMRKTPPQQMQKVFEALNTLGI 1554
            PY+PML+PPK W+GYDKGG+ FLPS+VMRTHGS +QQ+AM+    +QMQKVFEAL+ LG 
Sbjct: 403  PYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGS 462

Query: 1555 TKWRINRKVLGVVESLWASGGNIAGLVNCEDVPLPEKPLTEDPAEIDTWKWSVRKAKKIN 1734
            TKWR+NR VL VVESLWA GGN AGLV+ +DVP+PEKPL  D  E+  W+WS++KAKKIN
Sbjct: 463  TKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKIN 521

Query: 1735 RERHALRCDIELKLSVAQKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 1914
            +E H+ RCD+ELKLSVA+KM+DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA
Sbjct: 522  QELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFA 581

Query: 1915 EGRPLGESGLRWLKIHLANVYAGGVDKLSYEARVAFVENNLAEIFDSASNPIYGNRWWLT 2094
            EGRPLG+SGL WLKIHLAN+YAGGV+KLSY+ R+AFV+++L  IFDSASNP+ G+RWWLT
Sbjct: 582  EGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLT 641

Query: 2095 AEDPFQCLAACIDLSGALNSSSPHTFISHLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 2271
            AEDPFQCLAAC++LS AL SS+PHT IS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNL
Sbjct: 642  AEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 700