BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00016002
         (1724 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              637   e-180
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   637   e-180
gb|EOY33067.1| General transcription factor II H2 isoform 1 [The...   620   e-175
ref|XP_006489788.1| PREDICTED: general transcription factor IIH ...   611   e-172
ref|XP_006428490.1| hypothetical protein CICLE_v10011800mg [Citr...   611   e-172
ref|XP_006420615.1| hypothetical protein CICLE_v10005033mg [Citr...   611   e-172
gb|EXB98563.1| General transcription factor IIH subunit 2 [Morus...   608   e-171
ref|XP_006491820.1| PREDICTED: general transcription factor IIH ...   607   e-171
ref|XP_006418067.1| hypothetical protein EUTSA_v10007730mg [Eutr...   603   e-170
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   602   e-169
gb|EMJ06452.1| hypothetical protein PRUPE_ppa006259mg [Prunus pe...   601   e-169
ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. l...   601   e-169
ref|XP_004309875.1| PREDICTED: TFIIH basal transcription factor ...   600   e-169
ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|5...   598   e-168
ref|NP_683275.2| transcription initiation factor TFIIH subunit H...   598   e-168
ref|XP_003624959.1| General transcription factor IIH subunit [Me...   597   e-168
ref|XP_003554116.1| PREDICTED: general transcription factor IIH ...   595   e-167
ref|XP_004493385.1| PREDICTED: general transcription factor IIH ...   590   e-166
ref|XP_004237420.1| PREDICTED: general transcription factor IIH ...   590   e-166
ref|XP_006307618.1| hypothetical protein CARUB_v10009246mg [Caps...   589   e-165

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  637 bits (1643), Expect = e-180
 Identities = 303/398 (76%), Positives = 332/398 (83%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWERAY DERSWESLQEDESGLLRPIDNKT+Y AQY               IQKGLIR
Sbjct: 97   LDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIR 156

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAA+EMDFKPSRMAVVAKH+EAF+REFFDQNPLSQIGLV IKDG+A CLTD
Sbjct: 157  YLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTD 216

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSP+SH+KALM KL CSGD+SLQNAL+LVH YL QIPSYGHREVLILYSALSTCDPGD
Sbjct: 217  LGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 276

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQ+CKKSKIRCS++GLSAE+FIC+H+CQETGGSYS+ALDE H KELL EH      
Sbjct: 277  IMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPA 336

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAEGV+SIC CHKEAK+G GYTCPRCKARVCELPTECR+CGLT
Sbjct: 337  IAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLT 396

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDEVS S  N   Q+S   CFGC + LL PG     CV CP
Sbjct: 397  LVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACP 456

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            KCK++FCLDCDIYIHESLHNCPGCES RHS  ++  EE
Sbjct: 457  KCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTEE 494


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
            vinifera]
          Length = 433

 Score =  637 bits (1643), Expect = e-180
 Identities = 303/398 (76%), Positives = 332/398 (83%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWERAY DERSWESLQEDESGLLRPIDNKT+Y AQY               IQKGLIR
Sbjct: 36   LDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIR 95

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAA+EMDFKPSRMAVVAKH+EAF+REFFDQNPLSQIGLV IKDG+A CLTD
Sbjct: 96   YLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTD 155

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSP+SH+KALM KL CSGD+SLQNAL+LVH YL QIPSYGHREVLILYSALSTCDPGD
Sbjct: 156  LGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 215

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQ+CKKSKIRCS++GLSAE+FIC+H+CQETGGSYS+ALDE H KELL EH      
Sbjct: 216  IMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPA 275

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAEGV+SIC CHKEAK+G GYTCPRCKARVCELPTECR+CGLT
Sbjct: 276  IAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLT 335

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDEVS S  N   Q+S   CFGC + LL PG     CV CP
Sbjct: 336  LVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACP 395

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            KCK++FCLDCDIYIHESLHNCPGCES RHS  ++  EE
Sbjct: 396  KCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTEE 433


>gb|EOY33067.1| General transcription factor II H2 isoform 1 [Theobroma cacao]
            gi|508785812|gb|EOY33068.1| General transcription factor
            II H2 isoform 1 [Theobroma cacao]
            gi|508785813|gb|EOY33069.1| General transcription factor
            II H2 isoform 1 [Theobroma cacao]
          Length = 420

 Score =  620 bits (1599), Expect = e-175
 Identities = 295/392 (75%), Positives = 323/392 (82%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER YTDERSWESLQEDESGLLRPIDNK LY +QY               IQKGLIR
Sbjct: 26   LDAWERTYTDERSWESLQEDESGLLRPIDNKALYHSQYRRRLRSLSSTATAARIQKGLIR 85

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAA+E DF+PSR+ V+AKHVEAF+REFFDQNPLSQ+GL+ IKDGVA CLTD
Sbjct: 86   YLYLVIDLSRAASETDFRPSRIVVIAKHVEAFIREFFDQNPLSQVGLLTIKDGVAQCLTD 145

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESHIKALMNKL CSGD+SLQNAL+LV  YL QIPSYGHREVLILY+ALSTCDPGD
Sbjct: 146  LGGSPESHIKALMNKLECSGDSSLQNALDLVDGYLNQIPSYGHREVLILYAALSTCDPGD 205

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCKKSKIRCS++GL+AEMFICKH+CQETGG+YS+ALDE H KEL+ EH      
Sbjct: 206  IMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHAPPPPA 265

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAEG +SIC CHKEAK+GAGYTCPRCKARVCELPTECR+CGLT
Sbjct: 266  IAEFATANLIKMGFPQRAAEGSISICSCHKEAKVGAGYTCPRCKARVCELPTECRICGLT 325

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDEV   + N    K    CFGC Q LLNPG   G  V CP
Sbjct: 326  LVSSPHLARSYHHLFPIAPFDEVPPFSLNDPNHKLQRNCFGCQQSLLNPGNKPGLLVVCP 385

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNS 239
            KCK YFCLDCDIYIHESLHNCPGC+S RHS +
Sbjct: 386  KCKGYFCLDCDIYIHESLHNCPGCDSFRHSKA 417


>ref|XP_006489788.1| PREDICTED: general transcription factor IIH subunit 2-like isoform X1
            [Citrus sinensis]
          Length = 424

 Score =  611 bits (1575), Expect = e-172
 Identities = 292/397 (73%), Positives = 322/397 (81%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER+Y D+RSWE+LQEDESG LRPIDN  +Y AQY               IQKGLIR
Sbjct: 27   LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTAATARIQKGLIR 86

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAAAEMDF+PSRMAVVAK VEAFVREFF QNPLSQIGLV +KDGVA+CLTD
Sbjct: 87   YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFYQNPLSQIGLVTVKDGVANCLTD 146

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESHIKALM KL CSGD+S+QNAL+LVH  L QIPSYGHREVLILYSALSTCDPGD
Sbjct: 147  LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCK+SKIRCS++GLSAEMFICKH+CQETGG+YS+ALDE H KEL+ EH      
Sbjct: 207  IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHSKELILEHAPPPPA 266

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  A+LIKMGFPQRA EG +SIC CHKE K+G GYTCPRCKARVCELPTECR+CGL 
Sbjct: 267  IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTECRICGLQ 326

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDE + S  N +   S  TCFGC Q LL  G   G CV CP
Sbjct: 327  LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACP 386

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCKK+FCL+CDIYIHESLHNCPGCESLR SN + A E
Sbjct: 387  KCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423


>ref|XP_006428490.1| hypothetical protein CICLE_v10011800mg [Citrus clementina]
            gi|567871805|ref|XP_006428492.1| hypothetical protein
            CICLE_v10011800mg [Citrus clementina]
            gi|557530547|gb|ESR41730.1| hypothetical protein
            CICLE_v10011800mg [Citrus clementina]
            gi|557530549|gb|ESR41732.1| hypothetical protein
            CICLE_v10011800mg [Citrus clementina]
          Length = 425

 Score =  611 bits (1575), Expect = e-172
 Identities = 292/397 (73%), Positives = 321/397 (80%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER+Y D+RSWE+LQEDESG LRPIDN   Y AQY               IQKGLIR
Sbjct: 28   LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAAAEMDF+PSRMAVVAK VEAFVREFFDQNPLSQIGLV +KDGVA+CLTD
Sbjct: 88   YLYIVIDLSRAAAEMDFRPSRMAVVAKRVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPE+HIK LM KL CSGD+SLQNAL+LV   L QIPSYGHREVLILYSALSTCDPGD
Sbjct: 148  LGGSPEAHIKVLMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCK+SKIRCS++GLSAEMFICKH+CQ+TGGSYS+ALDE H KEL+ EH      
Sbjct: 208  IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRA EG +SIC CHKE K+G GYTCPRCKARVCELPT+C +CGL 
Sbjct: 268  IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCHICGLQ 327

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDEV+    N    +S  TCFGC Q LL+ G   G CV CP
Sbjct: 328  LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACP 387

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCKK+FCL+CDIYIHESLHNCPGCESLRHSN I A E
Sbjct: 388  KCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424


>ref|XP_006420615.1| hypothetical protein CICLE_v10005033mg [Citrus clementina]
            gi|557522488|gb|ESR33855.1| hypothetical protein
            CICLE_v10005033mg [Citrus clementina]
          Length = 424

 Score =  611 bits (1575), Expect = e-172
 Identities = 292/397 (73%), Positives = 321/397 (80%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER+Y D+RSWE+LQEDESG LRPIDN  +Y AQY               IQKGLIR
Sbjct: 27   LEAWERSYADDRSWEALQEDESGFLRPIDNSAIYHAQYRRRLRGRSLTVATARIQKGLIR 86

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAAAEMDF+PSRM VVAK VEAFVREFFDQNPLSQIGLV +KDGVA+CLTD
Sbjct: 87   YLYIVIDLSRAAAEMDFRPSRMVVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 146

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESHIKALM KL CSGD+S+QNAL+LVH  L QIPSYGHREVLILYSALSTCDPGD
Sbjct: 147  LGGSPESHIKALMGKLGCSGDSSIQNALDLVHGLLNQIPSYGHREVLILYSALSTCDPGD 206

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCK+SKIRCS++GLSAEMFICKH+CQETGG+YS+ALDE H KEL+ EH      
Sbjct: 207  IMETIQKCKESKIRCSVIGLSAEMFICKHLCQETGGTYSVALDESHFKELILEHAPPPPA 266

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  A+LIKMGFPQRA EG +SIC CHKE KIG GYTCPRCKARVCELPTEC +CGL 
Sbjct: 267  IAEFAIASLIKMGFPQRAGEGSISICSCHKEVKIGVGYTCPRCKARVCELPTECCICGLQ 326

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDE + S  N +   S  TCFGC Q LL  G   G CV CP
Sbjct: 327  LVSSPHLARSYHHLFPIAPFDEATPSRLNDLHNISRSTCFGCQQSLLASGNKAGLCVACP 386

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCKK+FCL+CDIYIHESLHNCPGCESLR SN + A E
Sbjct: 387  KCKKHFCLECDIYIHESLHNCPGCESLRQSNPVVANE 423


>gb|EXB98563.1| General transcription factor IIH subunit 2 [Morus notabilis]
          Length = 423

 Score =  608 bits (1568), Expect = e-171
 Identities = 291/398 (73%), Positives = 323/398 (81%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER Y DERSWESLQEDESGLLRPIDNKT Y AQY                QKGLIR
Sbjct: 30   LEAWERTYADERSWESLQEDESGLLRPIDNKTFYHAQYRRRLRSASAVRI----QKGLIR 85

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YL++V+D S+AAAEMDF+PSRMAVVAKHVEAF+REFFDQNPLSQ+GLV IKDGVAHCLTD
Sbjct: 86   YLFLVIDLSKAAAEMDFRPSRMAVVAKHVEAFIREFFDQNPLSQVGLVTIKDGVAHCLTD 145

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESH+K+LM KL CSG++S+QNAL+LVH+YL QIPSYGHREVLI YSALSTCDPGD
Sbjct: 146  LGGSPESHVKSLMGKLECSGESSIQNALDLVHDYLNQIPSYGHREVLIFYSALSTCDPGD 205

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCKKSKIRCS++GLSAE+FICKH+CQETGGSYS+ALDE H KEL+ EH      
Sbjct: 206  IMETIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGSYSVALDESHFKELILEHAPPPPA 265

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAE  ++IC CHKEAK G GYTCPRCKARVCELPTEC+ CGLT
Sbjct: 266  IAEYAIANLIKMGFPQRAAESSIAICSCHKEAKAGGGYTCPRCKARVCELPTECQTCGLT 325

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            L+SSPHLARSYHHLFPI PFDE+S S  +   +K  + CFGC Q LL  G   G  V+CP
Sbjct: 326  LISSPHLARSYHHLFPIVPFDEMSTSLLSDPHRKLSKACFGCQQSLLGFGNKPGPRVSCP 385

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            KCK  FCLDCDIYIHESLHNCPGCES RHS  +   EE
Sbjct: 386  KCKHQFCLDCDIYIHESLHNCPGCESARHSKPVAMSEE 423


>ref|XP_006491820.1| PREDICTED: general transcription factor IIH subunit 2-like isoform X1
            [Citrus sinensis] gi|568877611|ref|XP_006491821.1|
            PREDICTED: general transcription factor IIH subunit
            2-like isoform X2 [Citrus sinensis]
            gi|568877613|ref|XP_006491822.1| PREDICTED: general
            transcription factor IIH subunit 2-like isoform X3
            [Citrus sinensis] gi|568877615|ref|XP_006491823.1|
            PREDICTED: general transcription factor IIH subunit
            2-like isoform X4 [Citrus sinensis]
          Length = 425

 Score =  607 bits (1564), Expect = e-171
 Identities = 291/397 (73%), Positives = 320/397 (80%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER+Y D+RSWE+LQEDESG LRPIDN   Y AQY               IQKGLIR
Sbjct: 28   LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D SRAAAEMDF+PSRMAVVAK VEAFVREFFDQNPLSQIGLV +KDGVA+CLTD
Sbjct: 88   YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPE+HIK LM KL CSGD+SLQNAL+LV   L QIPSYGHREVLILYSALSTCDPGD
Sbjct: 148  LGGSPEAHIKVLMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCK+SKIRCS++GLSAEMFICKH+CQ+TGGSYS+ALDE H KEL+ EH      
Sbjct: 208  IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRA EG +SIC CHKE K+G GYTCPRCKARVCELPT+C +CGL 
Sbjct: 268  IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCHICGLQ 327

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            LVSSPHLARSYHHLFPI PFDEV+    N    +S  TCFGC Q LL+ G   G  V CP
Sbjct: 328  LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 387

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCKK+FCL+CDIYIHESLHNCPGCESLRHSN I A E
Sbjct: 388  KCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424


>ref|XP_006418067.1| hypothetical protein EUTSA_v10007730mg [Eutrema salsugineum]
            gi|557095838|gb|ESQ36420.1| hypothetical protein
            EUTSA_v10007730mg [Eutrema salsugineum]
          Length = 421

 Score =  603 bits (1555), Expect = e-170
 Identities = 293/417 (70%), Positives = 328/417 (78%), Gaps = 1/417 (0%)
 Frame = -2

Query: 1468 RKRMXXXXXXXXXXXXXDMSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXX 1289
            RKR+              +  WERAY D+RSWE+LQEDESGLLRPIDN  +Y AQY    
Sbjct: 5    RKRLNGEREEDDEEDAEGIGEWERAYVDDRSWEALQEDESGLLRPIDNSAIYHAQYRRRL 64

Query: 1288 XXXXXXXXXXXIQKGLIRYLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPL 1109
                       IQKGLIRYLY+V+DFSRAAAE DF+PSRMA++AKHVEAF+REFFDQNPL
Sbjct: 65   RILSAAAAGTRIQKGLIRYLYIVIDFSRAAAETDFRPSRMAIMAKHVEAFIREFFDQNPL 124

Query: 1108 SQIGLVVIKDGVAHCLTDMGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYG 929
            SQIGLV IK+GVAH LTD+GGSPESHI+ALM KL   GD+SLQNALELVHE+L Q+PSYG
Sbjct: 125  SQIGLVSIKNGVAHTLTDLGGSPESHIQALMGKLEALGDSSLQNALELVHEHLNQVPSYG 184

Query: 928  HREVLILYSALSTCDPGDIMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIAL 749
            HREVLILYSAL TCDPGDIMETIQKCKKSK+RCS++GLSAEMFICKH+CQETGG YS+A+
Sbjct: 185  HREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAV 244

Query: 748  DEFHLKELLFEHXXXXXXXXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPR 569
            DE HLK+LL EH            ANLIKMGFPQRAAEG ++IC CHK+ KIGAGYTCPR
Sbjct: 245  DEVHLKDLLLEHAPPPPAIAEFAVANLIKMGFPQRAAEGSMAICSCHKDVKIGAGYTCPR 304

Query: 568  CKARVCELPTECRLCGLTLVSSPHLARSYHHLFPITPFDEV-SFSNGNIVEQKSLETCFG 392
            CKARVCELPTEC +CGLTLVSSPHLARSYHHLFPI PFDEV + S+ N   +K  + CFG
Sbjct: 305  CKARVCELPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPTLSSLNDSRRKLGKCCFG 364

Query: 391  CMQKLLNPGTGIGYCVTCPKCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            C Q LL  G   G CVTC  CK YFCLDCDIYIHESLHNCPGCES+R   S++  EE
Sbjct: 365  CQQSLLGAGNKQGACVTCRNCKHYFCLDCDIYIHESLHNCPGCESIRRPKSVSLMEE 421


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
            sativus]
          Length = 423

 Score =  602 bits (1551), Expect = e-169
 Identities = 284/399 (71%), Positives = 322/399 (80%), Gaps = 2/399 (0%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            ++AWER Y D+RSWE+LQEDESGLLRPIDNK +Y AQY               IQKGLIR
Sbjct: 25   LAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIR 84

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+DFS+AA EMDF+PSRMAVVAKHV+AFVREFFDQNPLSQIGLV IKDG A+CLTD
Sbjct: 85   YLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTD 144

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESH+KALM KL CSGDASLQN LELVH YL QIPSYGHREVL+LYSAL++CDPGD
Sbjct: 145  LGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGD 204

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMET+QKCK SKIRCS++GL+AE+FIC+H+CQETGGSYS+ALDE H KELL EH      
Sbjct: 205  IMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPA 264

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                   NLIKMGFPQRAAE  ++IC CHKEAK+G GYTCPRCKARVCELPTECR+CGLT
Sbjct: 265  IADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLT 324

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTG--IGYCVT 341
            L+SSPHLARSYHHLFPI PFDEVS    +    +  + CFGC + L+NP TG      V+
Sbjct: 325  LISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVS 384

Query: 340  CPKCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            CPKCK++FCLDCDIYIHESLHNCPGCES R      + E
Sbjct: 385  CPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 423


>gb|EMJ06452.1| hypothetical protein PRUPE_ppa006259mg [Prunus persica]
          Length = 420

 Score =  601 bits (1550), Expect = e-169
 Identities = 291/397 (73%), Positives = 323/397 (81%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            ++AWERAY DERSWESLQEDESGLL+PIDN++L  AQY                QKGLIR
Sbjct: 27   LAAWERAYADERSWESLQEDESGLLQPIDNQSLKHAQYRRRLRAASTARI----QKGLIR 82

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            Y+Y+V+D S+AAAEMDF+PSRM VVAKHVEAF+ EFF QNPLSQ+GLV IKDGVAHCLTD
Sbjct: 83   YVYIVIDLSKAAAEMDFRPSRMGVVAKHVEAFIIEFFYQNPLSQVGLVTIKDGVAHCLTD 142

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSP SH+KALM KL CSGD+SLQNAL+LVH YL+QIPSYGHREVLILYSALSTCDPGD
Sbjct: 143  LGGSPNSHVKALMGKLECSGDSSLQNALDLVHGYLEQIPSYGHREVLILYSALSTCDPGD 202

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IMETIQKCKKSKIRCS++GLSAE+FICKH+CQETGG Y IALDE HLKEL+ EH      
Sbjct: 203  IMETIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGLYYIALDEPHLKELILEHAPPPPA 262

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAEG V+IC CHKEAK+G GYTCPRCKARVC+LPTECR+CGLT
Sbjct: 263  IAEFAIANLIKMGFPQRAAEGSVAICSCHKEAKVGGGYTCPRCKARVCDLPTECRICGLT 322

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            L+SSPHLARSYHHLFPI PFDEVS S     + K    CFGC Q LLNPG      V CP
Sbjct: 323  LISSPHLARSYHHLFPIVPFDEVSPSLLIDQQNKFPRACFGCQQSLLNPGNKPSLRVACP 382

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCK++FCLDCDIYIH+SLHNCPGCES  HS   NA +
Sbjct: 383  KCKQHFCLDCDIYIHDSLHNCPGCESASHSKIPNANK 419


>ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
            gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 421

 Score =  601 bits (1550), Expect = e-169
 Identities = 289/396 (72%), Positives = 323/396 (81%), Gaps = 1/396 (0%)
 Frame = -2

Query: 1405 WERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIRYLY 1226
            WERAY D+RSWE LQEDESGLLRPIDN  +Y AQY               IQKGLIRYLY
Sbjct: 26   WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 1225 VVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTDMGG 1046
            +V+DFSRAAAEMDF+PSRMA++AKHVEAF+REFFDQNPLSQIGLV IK+GVAH LTD+GG
Sbjct: 86   IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 1045 SPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGDIME 866
            SPE+HIKALM KL   GD+SLQNALELVHE+L Q+PSYGHREVLILYSAL TCDPGDIME
Sbjct: 146  SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 865  TIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXXXXX 686
            TIQKCKKSK+RCS++GLSAEMFICKH+CQETGG YS+A+DE HLK+LL EH         
Sbjct: 206  TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 685  XXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLTLVS 506
               ANLIKMGFPQRAAEG ++IC CHKE KIGAGY CPRCKARVC+LPTEC +CGLTLVS
Sbjct: 266  FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 505  SPHLARSYHHLFPITPFDEV-SFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCPKC 329
            SPHLARSYHHLFPI PFDEV + S+ N   +K  ++CFGC Q L+  G   G CVTC KC
Sbjct: 326  SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPGPCVTCRKC 385

Query: 328  KKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            K YFCLDCDIYIHESLHNCPGCES+    S++  EE
Sbjct: 386  KHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLMEE 421


>ref|XP_004309875.1| PREDICTED: TFIIH basal transcription factor complex p47 subunit-like
            [Fragaria vesca subsp. vesca]
          Length = 420

 Score =  600 bits (1548), Expect = e-169
 Identities = 289/397 (72%), Positives = 324/397 (81%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            ++AWERAY DERSWESLQEDESGLLRPIDN++L+ AQY                QKGLIR
Sbjct: 26   LAAWERAYADERSWESLQEDESGLLRPIDNQSLHHAQYRRRLRAATTARI----QKGLIR 81

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D S+AA+EMDF+PSRM VVAKHVEAF+RE+F QNPLSQ+GLV IKDGV+H LTD
Sbjct: 82   YLYIVIDLSKAASEMDFRPSRMGVVAKHVEAFIREYFYQNPLSQVGLVTIKDGVSHILTD 141

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESH+KALM KL CSGDASLQNAL+LV  YL QIPSYGHREVLI+YSALSTCDPGD
Sbjct: 142  LGGSPESHVKALMGKLECSGDASLQNALDLVQGYLDQIPSYGHREVLIMYSALSTCDPGD 201

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            IM TIQKCKKSKIRCS++GLSAE+FICKH+CQETGGSY IALDE HLK+L+ EH      
Sbjct: 202  IMGTIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGSYYIALDESHLKDLILEHAPPPPA 261

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAE  V+IC CHKEAK+G GYTCPRCKARVCELPTECR+CGLT
Sbjct: 262  IAEFAIANLIKMGFPQRAAESSVAICSCHKEAKVGDGYTCPRCKARVCELPTECRICGLT 321

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            L+SSPHLARSYHHLFPI PFDEVS S  +  + K  + CFGC Q +L PG   G  V CP
Sbjct: 322  LISSPHLARSYHHLFPIVPFDEVSMSLYSDQQNKLPKACFGCQQSVLGPGNKPGLRVACP 381

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCK++FCLDCDIYIHESLHNCPGC+S RHS    A E
Sbjct: 382  KCKQHFCLDCDIYIHESLHNCPGCDSTRHSKIPAANE 418


>ref|XP_002331276.1| predicted protein [Populus trichocarpa]
            gi|566166073|ref|XP_006384271.1| basic transcription
            factor 2 family protein [Populus trichocarpa]
            gi|550340817|gb|ERP62068.1| basic transcription factor 2
            family protein [Populus trichocarpa]
          Length = 412

 Score =  598 bits (1543), Expect = e-168
 Identities = 288/391 (73%), Positives = 323/391 (82%), Gaps = 1/391 (0%)
 Frame = -2

Query: 1414 MSAW-ERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLI 1238
            +  W ER Y+DERSWE+LQEDESGLLRP+DNK +Y AQY               IQKGLI
Sbjct: 22   LDGWGERNYSDERSWEALQEDESGLLRPLDNKAMYHAQYRRRLRSLSTASNSQRIQKGLI 81

Query: 1237 RYLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLT 1058
            R+LY+V+D SRAA+ MDF+PSRMAVVA++VEAF+REFFDQNPLSQI LV IKDGVA+ LT
Sbjct: 82   RFLYIVLDLSRAASVMDFRPSRMAVVAQNVEAFIREFFDQNPLSQIALVTIKDGVAYSLT 141

Query: 1057 DMGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPG 878
            ++GGSPESHIKALM KL CSGD+SLQNALELVHEYL +IPSYG+REVLILYSAL+TCDPG
Sbjct: 142  ELGGSPESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPG 201

Query: 877  DIMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXX 698
            DIMETIQKCKKSK+RCS++GLSAEMFICKH+CQETGG YS+ALDE H KEL+ EH     
Sbjct: 202  DIMETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPP 261

Query: 697  XXXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGL 518
                   ANLIKMGFPQRAAEG +SIC CHKE+K+G GY CPRCKARVCELPTECR+CGL
Sbjct: 262  AIAEFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGL 321

Query: 517  TLVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTC 338
            TLVSSPHLARSYHHLFPI PFDEV  S  N   ++S +TCFGC Q L+NPG      V C
Sbjct: 322  TLVSSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVAC 381

Query: 337  PKCKKYFCLDCDIYIHESLHNCPGCESLRHS 245
            PKCK+YFCLDCDIYIHESLHNCPGCESLR S
Sbjct: 382  PKCKQYFCLDCDIYIHESLHNCPGCESLRAS 412


>ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
            thaliana] gi|22087278|gb|AAM90909.1|AF499443_1
            p44/SSL1-like protein [Arabidopsis thaliana]
            gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic
            transcripion factor 2, 44 kD subunit from Homo sapiens.
            EST gb|W43325 comes from this gene [Arabidopsis thaliana]
            gi|110738828|dbj|BAF01337.1| putative transcription
            factor [Arabidopsis thaliana] gi|332189663|gb|AEE27784.1|
            transcription initiation factor TFIIH subunit H2
            [Arabidopsis thaliana]
          Length = 421

 Score =  598 bits (1541), Expect = e-168
 Identities = 288/396 (72%), Positives = 322/396 (81%), Gaps = 1/396 (0%)
 Frame = -2

Query: 1405 WERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIRYLY 1226
            WERAY D+RSWE LQEDESGLLRPIDN  +Y AQY               IQKGLIRYLY
Sbjct: 26   WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 1225 VVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTDMGG 1046
            +V+DFSRAAAEMDF+PSRMA++AKHVEAF+REFFDQNPLSQIGLV IK+GVAH LTD+GG
Sbjct: 86   IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 1045 SPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGDIME 866
            SPE+HIKALM KL   GD+SLQNALELVHE+L Q+PSYGHREVLILYSAL TCDPGDIME
Sbjct: 146  SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 865  TIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXXXXX 686
            TIQKCKKSK+RCS++GLSAEMFICKH+CQETGG YS+A+DE HLK+LL EH         
Sbjct: 206  TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 685  XXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLTLVS 506
               ANLIKMGFPQRAAEG ++IC CHKE KIGAGY CPRCKARVC+LPTEC +CGLTLVS
Sbjct: 266  FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 505  SPHLARSYHHLFPITPFDEV-SFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCPKC 329
            SPHLARSYHHLFPI PFDEV + S+ N   +K  ++CFGC Q L+  G     CVTC KC
Sbjct: 326  SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKC 385

Query: 328  KKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            K YFCLDCDIYIHESLHNCPGCES+    S++  EE
Sbjct: 386  KHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLMEE 421


>ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355499974|gb|AES81177.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 426

 Score =  597 bits (1539), Expect = e-168
 Identities = 285/401 (71%), Positives = 320/401 (79%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWERAYT++RSWESLQEDESGLLRPID   ++ AQY               IQKGLIR
Sbjct: 26   LEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIR 85

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D S+AA+E DF+PSRMAV+AK VE F+REFFDQNPLS +GLV  KDGVA+CLTD
Sbjct: 86   YLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTD 145

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESHIKALM KL CSGDASLQNALELVH  L QIPSYGHREVLILYSALSTCDPGD
Sbjct: 146  LGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGD 205

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            +METIQKCKKSKIRCS++GL+AEMFICKH+CQETGG+YS+ALDE H KEL+ EH      
Sbjct: 206  LMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPA 265

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAEG V+IC CH+EAK G GYTCPRCK RVCELPTECR+CGLT
Sbjct: 266  IAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 325

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIG----YC 347
            L+SSPHLARSYHHLFPI PF E+S S+ N        TCFGC Q LL+ G G G      
Sbjct: 326  LISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLSQGFGAGNKAELS 385

Query: 346  VTCPKCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            V+CPKCK+ FCLDCD+YIHESLHNCPGCES RHS S+   +
Sbjct: 386  VSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSKSVTIAQ 426


>ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2 [Glycine max]
          Length = 420

 Score =  595 bits (1535), Expect = e-167
 Identities = 280/397 (70%), Positives = 318/397 (80%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWER Y ++RSWE+LQEDESGLLRPID   +Y AQY               IQKGLIR
Sbjct: 24   LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            YLY+V+D S+AA+E DF+PSRMAV+ K VEAF+REFFDQNPLS +GLV IKDG+AHC+T+
Sbjct: 84   YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESHIKALM KL CSGDASLQNALELV  YL QIPSYGHREVLILYSALSTCDPGD
Sbjct: 144  LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            +METIQKCKKSKIRCS++GL+AEMF+CKH+CQETGG+YS+ALDE H KEL+ EH      
Sbjct: 204  LMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPA 263

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQR+AEG V+IC CH+EAK G GYTCPRCK RVCELPTECR+CGLT
Sbjct: 264  IAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 323

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            L+SSPHLARSYHHLFPI  FDEV+ S+ N        TCFGC Q LL+ G   G  V CP
Sbjct: 324  LISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICP 383

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGE 224
            KCK+ FCLDCDIY+HESLHNCPGCES RHS S+ A +
Sbjct: 384  KCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 420


>ref|XP_004493385.1| PREDICTED: general transcription factor IIH subunit 2-like [Cicer
            arietinum]
          Length = 422

 Score =  590 bits (1521), Expect = e-166
 Identities = 280/393 (71%), Positives = 316/393 (80%)
 Frame = -2

Query: 1414 MSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIR 1235
            + AWERAYT++RSWESLQEDESGLLRPID   ++ AQY               IQKGLIR
Sbjct: 27   LEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALAATAATARIQKGLIR 86

Query: 1234 YLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTD 1055
            Y+Y+V+D S+AA+E DF+PSRMAV+AK VEAF+REFFDQNPLS +GLV  KDGVA  LTD
Sbjct: 87   YMYIVVDLSKAASERDFRPSRMAVIAKQVEAFIREFFDQNPLSHVGLVTTKDGVAQSLTD 146

Query: 1054 MGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGD 875
            +GGSPESHIKALM KL CSGDASLQNAL+LVH+ L QIPSYGHREVLILYSALSTCDPGD
Sbjct: 147  LGGSPESHIKALMGKLECSGDASLQNALDLVHDNLNQIPSYGHREVLILYSALSTCDPGD 206

Query: 874  IMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXX 695
            +METIQKCKKSKIRCS++GL+AEMFICKH+CQETGG+YS+ALDE H KEL+ EH      
Sbjct: 207  LMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHAPPPPA 266

Query: 694  XXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLT 515
                  ANLIKMGFPQRAAEG V+IC CH+EAK G GYTCPRCK RVCELPTECR+CGLT
Sbjct: 267  IAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLT 326

Query: 514  LVSSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCP 335
            L+SSPHLARSYHHLFPI PF E+S S+ N         CFGC + LL+ G      V+CP
Sbjct: 327  LISSPHLARSYHHLFPIVPFVEISPSSQNDPSHNFPNICFGCQESLLSHGNKPELSVSCP 386

Query: 334  KCKKYFCLDCDIYIHESLHNCPGCESLRHSNSI 236
            KCK+ FCLDCDIYIHESLHNCPGCES RHS S+
Sbjct: 387  KCKQQFCLDCDIYIHESLHNCPGCESFRHSKSV 419


>ref|XP_004237420.1| PREDICTED: general transcription factor IIH subunit 2-like [Solanum
            lycopersicum]
          Length = 414

 Score =  590 bits (1521), Expect = e-166
 Identities = 288/396 (72%), Positives = 320/396 (80%)
 Frame = -2

Query: 1408 AWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXXXXXXXXXXXXXIQKGLIRYL 1229
            AWER Y DERSWESLQEDESGLLRPIDNKTL  AQY                QKGLIRYL
Sbjct: 24   AWERTYADERSWESLQEDESGLLRPIDNKTLSHAQYRRRLRTATAARI----QKGLIRYL 79

Query: 1228 YVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPLSQIGLVVIKDGVAHCLTDMG 1049
            Y+++DFSRAAAEMD+KPSRM VVA+ VEA++REFFDQNPLSQIGLV++KDGVAHCLTD+G
Sbjct: 80   YIIIDFSRAAAEMDYKPSRMVVVARQVEAYIREFFDQNPLSQIGLVILKDGVAHCLTDLG 139

Query: 1048 GSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYGHREVLILYSALSTCDPGDIM 869
            GSPE+HIKALM KL  SGDASLQN L+LV + L QIPSYGHRE LILYSALSTCDPGDI+
Sbjct: 140  GSPEAHIKALMGKLGTSGDASLQNGLDLVCDLLNQIPSYGHREALILYSALSTCDPGDIL 199

Query: 868  ETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIALDEFHLKELLFEHXXXXXXXX 689
            ETIQKCK SKIRCS++GLSAE++ICKH+CQETGG Y +ALDE HLKEL+ EH        
Sbjct: 200  ETIQKCKASKIRCSVIGLSAELYICKHLCQETGGMYFVALDEPHLKELVLEHAPPPPAIA 259

Query: 688  XXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPRCKARVCELPTECRLCGLTLV 509
                ANLIKMGFPQR AEGV+SIC CHKEAK+G GYTCPRCKAR+CELPTEC +CGLTLV
Sbjct: 260  EFAVANLIKMGFPQRTAEGVISICSCHKEAKVGGGYTCPRCKARICELPTECCICGLTLV 319

Query: 508  SSPHLARSYHHLFPITPFDEVSFSNGNIVEQKSLETCFGCMQKLLNPGTGIGYCVTCPKC 329
            SSPHLARSYHHLFPI PFD+VS S       K  + CFGC   LLNPG   G  V CP C
Sbjct: 320  SSPHLARSYHHLFPIRPFDDVSPSALKDF-HKLPKNCFGCQLSLLNPGNLPGPQVACPNC 378

Query: 328  KKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            K++FCLDCDIYIHESLHNCPGCESLR+S +I+  EE
Sbjct: 379  KQHFCLDCDIYIHESLHNCPGCESLRNSKTISDMEE 414


>ref|XP_006307618.1| hypothetical protein CARUB_v10009246mg [Capsella rubella]
            gi|482576329|gb|EOA40516.1| hypothetical protein
            CARUB_v10009246mg [Capsella rubella]
          Length = 421

 Score =  589 bits (1518), Expect = e-165
 Identities = 285/417 (68%), Positives = 324/417 (77%), Gaps = 1/417 (0%)
 Frame = -2

Query: 1468 RKRMXXXXXXXXXXXXXDMSAWERAYTDERSWESLQEDESGLLRPIDNKTLYLAQYXXXX 1289
            RKR+              +  WERAY D+RSWE LQEDESGLLRPIDN  +Y AQY    
Sbjct: 5    RKRLSGEREDEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRL 64

Query: 1288 XXXXXXXXXXXIQKGLIRYLYVVMDFSRAAAEMDFKPSRMAVVAKHVEAFVREFFDQNPL 1109
                       IQKGLIRYLY+V+DFSRAAAE DF+PSR+AV+AKHVEAF+REFFDQNPL
Sbjct: 65   RMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAETDFRPSRIAVMAKHVEAFIREFFDQNPL 124

Query: 1108 SQIGLVVIKDGVAHCLTDMGGSPESHIKALMNKLACSGDASLQNALELVHEYLKQIPSYG 929
            SQ+GLV IK+GVAH LTD+GGSPE+HIK LM KL   GD+SLQNALELV+E+L Q+PSYG
Sbjct: 125  SQVGLVSIKNGVAHTLTDLGGSPETHIKELMGKLEALGDSSLQNALELVNEHLSQVPSYG 184

Query: 928  HREVLILYSALSTCDPGDIMETIQKCKKSKIRCSIVGLSAEMFICKHICQETGGSYSIAL 749
            HREVLILYSAL TCDPGDIM+TIQKCKKSK+RCS++GLSAEMFICKH+CQETGG YS+A+
Sbjct: 185  HREVLILYSALCTCDPGDIMDTIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAV 244

Query: 748  DEFHLKELLFEHXXXXXXXXXXXXANLIKMGFPQRAAEGVVSICVCHKEAKIGAGYTCPR 569
            DE HLK+LL EH            +NLIKMGFPQRAAEG ++IC CHKE KIGAGY CPR
Sbjct: 245  DEVHLKDLLLEHAPPPPAIAEFAISNLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPR 304

Query: 568  CKARVCELPTECRLCGLTLVSSPHLARSYHHLFPITPFDEV-SFSNGNIVEQKSLETCFG 392
            CKARVC+LPTEC +CGLTLVSSPHLARSYHHLFPI PFDEV + S+ N   +   ++CFG
Sbjct: 305  CKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDSRKDLGKSCFG 364

Query: 391  CMQKLLNPGTGIGYCVTCPKCKKYFCLDCDIYIHESLHNCPGCESLRHSNSINAGEE 221
            C Q L   G   G CVTC KCK YFCLDCDIYIHESLHNCPGCES+    S++  EE
Sbjct: 365  CQQSLNGAGNKPGPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLMEE 421