BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00014367
         (4060 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1714   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1699   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1689   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1665   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1661   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1660   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1644   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1629   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1621   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1620   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1609   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1607   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1605   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1605   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1605   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1603   0.0  
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...  1593   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1593   0.0  
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...  1593   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1592   0.0  

>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1714 bits (4440), Expect = 0.0
 Identities = 819/1204 (68%), Positives = 978/1204 (81%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M +E + K++VVTQ+S GGFD H+TAK   +YLE E+G L+WRCRLK SWTPPESYP+F+
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + D   +   +DY +VEPHAFVHFA P S    ++AA R +L LN K LK + GP+NPF 
Sbjct: 60   ITDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFT 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RR T P+KL+ V + IGTLVSRD+  V WRGPPTG++FLVDPFDGTC+FCF+R T 
Sbjct: 120  LNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK+  ++A IKCDFK+EFLVR+I EIK+YT+               ++YRTADDDI  
Sbjct: 180  FSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEV 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
            SV FDLLDDDDPWIRTTD T SG IGRC++Y++SIPPR+GP+L +A+ FL ERRV  E  
Sbjct: 240  SVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYL 299

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            ++ +R++DEP F +   DPFFCI HKEG+AFDV F++NA +HKGI NQH+LS  FFDLLR
Sbjct: 300  RRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLR 359

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  EVN+AALKHI  Y+RPVFDAY++LK+ Q+WL++NP+  K   KL DI E+RRL+IT
Sbjct: 360  NQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVIT 419

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PTKAYCLPPE ELSNRVLR Y+DV+DRFLRVTFMDEG+Q +N N L+Y+  PI++ ITS 
Sbjct: 420  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSY 479

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++PQKT +FKRV  +L +GF LCGR Y+FLAFSSNQLRDRSAWFFAED   R + V  I+
Sbjct: 480  SFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAED---RNINVMAIK 536

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
            +WMGKFTNKNIAKCAARMGQCFSSTYAT+EV  ++V+SDLPDIKRN Y+FSDGIG+ITPD
Sbjct: 537  SWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPD 596

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA EVAEKL+    PP AYQIR+ GCKGVVACWP + + I+L LR SMNKF S H+++E+
Sbjct: 597  LAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEI 656

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLSAL V D VFW MQ  MVSKL+QMLV+++VAFDVLTASCAE
Sbjct: 657  CSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAE 716

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN AAIMLSAGF+PQ EPHLR ML+C+RAAQL  LREKARIFV SGRWLMGCLDE+GVL
Sbjct: 717  QGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVL 776

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            E GQCFIQVSN  LENCF KHGS+FSE K N Q++KG VV+AKNPCLHPGD+RILEAVD 
Sbjct: 777  EQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDA 836

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            P LHHL DCLVFPQKGERPH +EASGSDLDGDLYFVTW+E LIPPSKRSW PM+Y  AE 
Sbjct: 837  PGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEA 896

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            K+L RPVNH DI++FF KNM NENLG ICNAHVV ADLS+YGALDEKC+ LAELAA AVD
Sbjct: 897  KQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVD 956

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG+IV +P+ LKPKIYPDFMGK E QSYKS+KILG+LY+ IKDAY  +D   +SEL+
Sbjct: 957  FPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELN 1016

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
                D+ YD+DLEV G+ DF++DAW  KCSY GQL GLLAQYKV+ EEE+VTGHVWS+PK
Sbjct: 1017 FVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPK 1076

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
             +SRKQG+LKE+LKH+Y+CLKREFRQ F+K+D +F  L D+E+N +YE+KASAWYQV+Y 
Sbjct: 1077 GSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYH 1136

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
              W++KSLELQ  DG G   V+LSFAWI ADYLARIK+RH   GN D   KP+NSLA YL
Sbjct: 1137 PHWIQKSLELQDSDGAG-ISVMLSFAWIAADYLARIKIRHSRIGNVDS-AKPVNSLAKYL 1194

Query: 452  AKCM 441
            A  M
Sbjct: 1195 ADRM 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1699 bits (4399), Expect = 0.0
 Identities = 811/1207 (67%), Positives = 980/1207 (81%), Gaps = 3/1207 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M +E + K++VVTQ+S GGFD H+TAK   +YL+  +G L+WRCRLK SWTPPESYP+F+
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + D   +E  +DY +V PHAFVHFA P S    +NA+GR +L LN K LKV+ GP+NPF 
Sbjct: 60   ITDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFT 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT P+KL+DV   IG LVSRD+  V WRGPP+G++FLVDPFDGTCKFCF+R T 
Sbjct: 120  LNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+ K+ +++A IKCDFK+EFLVR+I EI +YT+               ++YRTADDDI  
Sbjct: 180  FSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEA 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPV--- 3162
             V FDLLDDDDPWIRTTD T SG IGRC++Y++SIPPR+G +L +A+K+L ERRV V   
Sbjct: 240  WVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQE 299

Query: 3161 ECSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFD 2982
            E  ++ +R+ DEP F +  +DPFFCI HKEG+AF+V F++NA +HKGI NQH+LS  FFD
Sbjct: 300  ENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFD 359

Query: 2981 LLRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRL 2802
            LLR Q  EVN++ALKHIC+Y+RPVF+AYRRLK VQ+WL++NP L K P +L D+VE+RRL
Sbjct: 360  LLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRL 419

Query: 2801 IITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMI 2622
            +ITPTKAYCLPPE ELSNRVLR Y+DV+DRFLRVTFMDEG+Q +N NVL+YY  PI++ I
Sbjct: 420  VITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDI 479

Query: 2621 TSNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVK 2442
            TSN++PQKT +FKRV  +L +GF LCGR Y+FLAFS+NQLRD+SAWFF+E+   R ++V 
Sbjct: 480  TSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEE---RNISVL 536

Query: 2441 EIRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGII 2262
            ++++WMGKFTN+NIAKCAARMGQCFSSTYAT+EV  ++V+SDLPDI+RN Y FSDGIGII
Sbjct: 537  DVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGII 596

Query: 2261 TPDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSV 2082
            TPDLA EVAEKL+L   PP AYQIR+ GCKGVVACWP K + ++L LR SMNKF S H+ 
Sbjct: 597  TPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTT 656

Query: 2081 VEVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTAS 1902
            +E+CSWTR QPGFLNRQI+TLLS L V D VFW MQ +MVSKL+QM VN++VAFDVLTAS
Sbjct: 657  LEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTAS 716

Query: 1901 CAEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEI 1722
            CA+QGN AAIMLSAGF+P  EPHLR ML+C+RAAQL DLREK RIFV SGRWLMGCLDE+
Sbjct: 717  CADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDEL 776

Query: 1721 GVLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEA 1542
            G+LE GQCFIQVSN SLE CF KHG++FSE + N Q+IKG VV+AKNPCLHPGDVR+LEA
Sbjct: 777  GMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEA 836

Query: 1541 VDCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTP 1362
            VD P LHHL DCLVFPQKGERPH +EASGSDLDGDLYFVTW+E LIPPSKRSW PM+Y  
Sbjct: 837  VDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDA 896

Query: 1361 AEVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAAL 1182
            AE K L RPVNH DII+FF KNMVN+NLG ICNAHVVHADLS+YGA D+ C+ LAELAA 
Sbjct: 897  AEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAAT 956

Query: 1181 AVDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPAS 1002
            AVDFPKTG++V +P  LKPK+YPDFMGK E QSYKSEKILG+LY+ IKDAY  ED   +S
Sbjct: 957  AVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAY-DEDVAASS 1015

Query: 1001 ELDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWS 822
            EL++ P D+ YD DLEV G+ D+++DAW  KCSY GQL GLL+QYKV+ EEE+VTGH+WS
Sbjct: 1016 ELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWS 1075

Query: 821  LPKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQV 642
            +PK +SRKQGELK++LKH+Y+ LK+EFRQ F+K+D  FE L D E+N +YE+KASAWYQV
Sbjct: 1076 MPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQV 1135

Query: 641  SYRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLA 462
             Y   WVKKSLELQ PDG G   V+LSFAWI ADYLARIK+RH   GN D   KP+NSLA
Sbjct: 1136 VYHPHWVKKSLELQDPDGAG-TSVMLSFAWIAADYLARIKIRHRETGNVDS-AKPVNSLA 1193

Query: 461  NYLAKCM 441
             YLA  M
Sbjct: 1194 KYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1689 bits (4373), Expect = 0.0
 Identities = 809/1206 (67%), Positives = 976/1206 (80%), Gaps = 5/1206 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M ++  EK++VVTQ+SFGGFD  +TA+    YL++E+G  +WRCRLK SWTPPESYP+F+
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQ-VWRCRLKTSWTPPESYPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + DT  ++  D Y +VEPHAFVHFA+PDS     NAAG  +L  NG+ +KV+ GP+NPF 
Sbjct: 60   ITDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFH 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTTIP+KL+DV + IGTLVSRD+ +V WRGPP+G++FLVDPFDG CKFCFTR+T 
Sbjct: 120  LNQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK   ++A I+CDFK+EFLVR+I EIK+YTD               ++YRTADDDI  
Sbjct: 180  FSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEV 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
             V FDLLDDDDPWIRTTD TPSG IGRCN+Y++SIPPR+G +L+RA+ FL ERRV  +C 
Sbjct: 240  LVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCL 299

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            ++ L V  EP + +  +DPFFCI H+EGV F++ F++NA +HKGI NQH+LS  FFDLLR
Sbjct: 300  RRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLR 359

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  +VNIAAL+HICSYK PVFDA++RLK VQ WL++NP+L ++  +L DIVE+RRL IT
Sbjct: 360  NQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAIT 419

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PT+AYCLPPE ELSNRVLR Y+D++D+FLRVTFMDEG+Q +N N L+YY  PI++ ITSN
Sbjct: 420  PTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSN 479

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++ QKT +FKRV  +L  GF LCGR Y+FLAFSSNQLRDRSAWFFAED +    +V +IR
Sbjct: 480  SFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKT---SVSKIR 536

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
            NWMGKFTN+NIAKCAARMGQCFSSTYATVEV   +   DLPDI+RN+Y FSDGIG+ITPD
Sbjct: 537  NWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPD 596

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA EVAEKL+L+ +PP AYQIR+ GCKGVVACWPA  + I+L LR SMNKF S H+ +E+
Sbjct: 597  LAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEI 656

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLS L+V DE+FW MQ+ MVSKL+QM ++ +VAFDV+TASCAE
Sbjct: 657  CSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAE 716

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGNTAAIMLSAGF P+TEPHL  ML+CIRAAQL  LREK RIFV SGRWLMGCLDE+GVL
Sbjct: 717  QGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVL 776

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            EHGQCFIQVSNPSLE+CF KHGSRFSE K   Q++KG VVVAKNPCLHPGD+RILEAVD 
Sbjct: 777  EHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDA 836

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            PELHHL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSKRSW PM+Y  AE 
Sbjct: 837  PELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEA 896

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            K+L RPVNH DIIDFF KNMVNENLG ICNAHVVHADLS+YGALDE C+KLAELAA AVD
Sbjct: 897  KQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVD 956

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAY-----FKEDSFP 1008
            FPKTG++V +P  LKPK+YPDFMGK + QSY S KILG+LY+ +KD Y       +D+  
Sbjct: 957  FPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAAT 1016

Query: 1007 ASELDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHV 828
            +SEL++   D+ YD DLEV GS D++ DAW  KCSY GQL GLLAQYKV+ EEE+VTGH+
Sbjct: 1017 SSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHI 1076

Query: 827  WSLPKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWY 648
            WS+PK NSRKQGELKE+LK +Y  LK+EFRQ F+K+D++FE L ++E+N +YE+KASAWY
Sbjct: 1077 WSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWY 1136

Query: 647  QVSYRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINS 468
            QV+Y  +WV KS+ELQ PD  G A  +LSFAWI ADYLARIK+R  G    D   KP+NS
Sbjct: 1137 QVAYHPKWVNKSMELQEPDAAGCAS-MLSFAWIAADYLARIKIRCRGFDGVDTS-KPVNS 1194

Query: 467  LANYLA 450
            L  YLA
Sbjct: 1195 LVKYLA 1200


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1665 bits (4312), Expect = 0.0
 Identities = 817/1202 (67%), Positives = 973/1202 (80%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M SE +EK  VVTQ+S GGFD ++TA     YLED +G  + RCRLK S TPPESYPDF+
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGS-VDRCRLKTSSTPPESYPDFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            ++DT  +E  +DY+KVEPHAFVHF +P++    L+AAG+++L L+GK LKV+ GP+ PF 
Sbjct: 60   IIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFH 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT P+K  DVRL IG LVSRD+    WRGP +G++FLVDPFDGTCKF FT++T 
Sbjct: 120  LNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK   K+A IKC+FK+EFLVREI E+++  D               +YYRTADDDI E
Sbjct: 180  FSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEE 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPV--E 3159
            +V FDLLDDDDPWIRTTD T SG IGRCN+Y+ISIPPR G +L++A+ +L  RRV V  +
Sbjct: 240  TVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLED 299

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
              K  LRV+DEP F +  +DPFFCIQHKEG+ F V F++NA +HKGIINQH+LS +FFDL
Sbjct: 300  SPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDL 359

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR+Q  ++NIAALKHICSY+ PVFDAY+RLKLV  WL++NP+LLK+P +L DIVEVRRL+
Sbjct: 360  LRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLV 419

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITP+KAYCLPPE ELSNRVLR+Y++VSDRFLRVTFMDEGMQ +N NVL+YY  PI+K+IT
Sbjct: 420  ITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVIT 479

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN++PQKT VFKRV  +L  GF LCGR Y+FLAFSSNQLRDRSAWFFAEDK+    +V+ 
Sbjct: 480  SNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKT---SVRA 536

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I++WMGKFTN+N+AKCAARMGQCFSSTYATVEV   +V  +LPDIKRN Y+FSDGIG I 
Sbjct: 537  IKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIV 595

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
            PDLA+EVAEKL+L+ + PSAYQIR+ GCKGVVACWP+ ++ I+L  R SMNKF+S H+++
Sbjct: 596  PDLAMEVAEKLKLEGT-PSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLSAL V D++FW MQ SM+SKL+QML + +VAFDVL ASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AEQGNTAAIMLSAGF+PQTEPHL+ ML+CIRAAQ   LREKARIFV SGRWLMGCLDE+G
Sbjct: 715  AEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
            VLE GQCFIQVS+PSLENCF KHGSRFS  K N ++IKG+V +AKNPCLHPGDVRILEAV
Sbjct: 775  VLEQGQCFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRILEAV 833

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P L HL DCLVFPQKG+RPH +EASGSDLDGDLYFVTWEE LIPPSK+SWPPM+Y  A
Sbjct: 834  DAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSA 893

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            E K L R V  +DIIDFFTKNMVNENLG ICNAHVVHAD S+YGALDE C+ LAE AA A
Sbjct: 894  EAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATA 953

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V LP  LKPK+YPDFMGK E Q+Y+S KILGK+Y+ IKDAY  ED   +SE
Sbjct: 954  VDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAY-NEDVSESSE 1012

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
                   V +D DL + GS DF+NDAW  KCSY GQL GLL QYKV+ EEE+VTGHVWS+
Sbjct: 1013 QIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSM 1072

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK  SRKQGEL E+LKHAYS LK+EFRQ F+K++++F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1073 PKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVT 1132

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WVKKSLELQ PD      V+LSFAWI ADYLARIK+R  G GN D   KPINSLA 
Sbjct: 1133 YHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSS-KPINSLAR 1191

Query: 458  YL 453
            +L
Sbjct: 1192 FL 1193


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1661 bits (4301), Expect = 0.0
 Identities = 802/1201 (66%), Positives = 965/1201 (80%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M  E +E  SVVTQ+SFGGF  H  AK    YLEDE+G L++RCRLK SWTPPES+P+F+
Sbjct: 1    MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIG-LVYRCRLKTSWTPPESFPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
             ++T D++  DDY +VEPHAFVHF +PDSV   ++AAGR +L  N + LKV+ GP+NP+ 
Sbjct: 60   -INTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYF 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +N++RRT  P+KL+DV + IG+LV +D+   SWRGPP G++F+VDPFDGTCKFCFT +T 
Sbjct: 119  LNRRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK   K+A IKCDFK+EFLVREI EIK+YTD               + YRTADDDI +
Sbjct: 179  FSFKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQ 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
            SV FDLLDDDDPWIRTTD TPSG IGRCN+Y++ IPPR+G +L++A+ +L ERRV   C 
Sbjct: 239  SVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCI 298

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            K   +++DEP F +   +PFF IQ++EG++F++ F++NA +HKG +NQH+LS  FF LLR
Sbjct: 299  KWPPKIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLR 358

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
            +Q  E+N+AALKH+CSY+ PVFDA  RLK+VQDWL++NP+L+K P +L DI EVRRL+IT
Sbjct: 359  SQPKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVIT 418

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PTKAYCLPPE ELSNRVLR Y++V+DRFLRVTFMDEGMQ +N NVL+YY  PI+K ITSN
Sbjct: 419  PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSN 478

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++ QKT+VFKR   +L  GF LCGR YTFLAFSSNQLRDRSAWFFAE      ++V +I 
Sbjct: 479  SFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVN---ISVGKIT 535

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
            +WMGKF NKN+AKCAARMGQCFSSTYATVEV+  +V+ D+PDIKRN Y FSDGIG+ITPD
Sbjct: 536  SWMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPD 594

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LALEVAEKL+L  +PP AYQIRF GCKGVVACWP+K +  +L LR SMNKF S H+ +E+
Sbjct: 595  LALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEI 654

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLS L V DE+FW MQ  MV KL+QMLV+ +VAFDVLTASCAE
Sbjct: 655  CSWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAE 714

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN AAIMLSAGF+PQTEPHLR ML+CI+AAQL  LREKARIFV SGRWLMG LDE+GVL
Sbjct: 715  QGNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVL 774

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            E GQCF+QVS P LE+CF KHGS F++++ N Q+IKG VV+AKNPCLHPGD+RILEAVD 
Sbjct: 775  EQGQCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDA 834

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            P LHHL DCLVFPQKG+RPH DEASGSDLDGDLYFVTW+E LIPPSK+SW PM+Y PAE 
Sbjct: 835  PGLHHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEA 894

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            K   RPV   DIIDFF KNM NENLG ICNAHVVHAD SDYGALD  C+KLAELAALAVD
Sbjct: 895  KLQGRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVD 954

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG+IV LP  LKP++YPDF+GK ++QSYKS KILG+LY+ ++DAY  ED+  +SEL 
Sbjct: 955  FPKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAY-DEDAATSSELH 1013

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
              P D+ YDMDLEV G+ DF+ DAW  KCSY GQL GL+ QYKV+ EEEIVTGHVWS+PK
Sbjct: 1014 YFPSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPK 1073

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
            SNS+KQGELKE+L H+Y+ LK+EFRQ F+ LD+N E L D+E+N + EKKASAWYQV+Y 
Sbjct: 1074 SNSKKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYH 1133

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
             +WVK+S  LQ PDG G   V+LSFAWI ADYLARIK++  G  + D   KPINSL  YL
Sbjct: 1134 PKWVKQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDS-TKPINSLKRYL 1192

Query: 452  A 450
            A
Sbjct: 1193 A 1193


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1660 bits (4298), Expect = 0.0
 Identities = 801/1201 (66%), Positives = 955/1201 (79%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M  E  E  +VVTQ+SFGGF  H+TAK    YLEDE+G L++RCRLK SWTPPES P+F+
Sbjct: 1    MELEERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIG-LVFRCRLKTSWTPPESVPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + D  D+E  DDY KVEPHAFVHFA+P+SV +V++A GR  L  N + LK + GP+N F 
Sbjct: 60   ISDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFN 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +N++RRT IP+KL DVRL IG+LV  D+  V+W+GP  G++F+VDPFDGTCKFCF R+T 
Sbjct: 120  MNKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK  NK+A I CDFK EF VREI E K YT+               + YRTADDDI +
Sbjct: 180  FSFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQ 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
            SVLFDLLDDDDPWIRTTD TP+G IGRCN Y++ IPPR+G +L++A+ +L ERRV     
Sbjct: 240  SVLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFI 299

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            K+  R++DEPGF    +D  F I +++ ++FD+ F++NA +HKGI+NQH+LS  FFDLLR
Sbjct: 300  KKPPRIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLR 359

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  E+N+AALKH+CSYK PVFDA +RLKLVQ+WL+RNP+L+K P +L DI EVRRL+IT
Sbjct: 360  NQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVIT 419

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PTKAYCLPPE ELSNRVLR Y++V+DRFLRVTFMDEGMQ +N NV++ Y  PI+K IT N
Sbjct: 420  PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITEN 479

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            T+PQKT V+ R+  +L  GF LCGR Y+FLAFSSNQLRDRSAWFFAEDK    ++++ I+
Sbjct: 480  TFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKT---ISIQGIK 536

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
            NWMG+FTN+N+AKCAARMGQCFSSTYATVEV   QV+ +LPDI+RN Y FSDGIG ITPD
Sbjct: 537  NWMGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPD 596

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA+EVAEKL+L   PPSAYQIR+GGCKGVVACWP+  +  +L LR SMNKF S H+ +E+
Sbjct: 597  LAMEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEI 656

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTRLQPGFLNRQI+TLLSAL V DE+FWTMQ +MVSKL QMLV+ +VAFDVLTASCAE
Sbjct: 657  CSWTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAE 716

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN+AAIMLSAGF+PQTEPHLR ML+CI+AAQL  LREK RIFV SGRWLMGCLDE+GVL
Sbjct: 717  QGNSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVL 776

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            E GQCF+QVS PSLENCF KHGSRF +   N Q+IKG VVVAKNPCLHPGD+RILEAVD 
Sbjct: 777  EQGQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDA 836

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            P LHHL DCLVFPQKG RPH DEASGSDLDGDLYFVTW+E LIPP K+SW PMEY PAE 
Sbjct: 837  PGLHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEA 896

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            K   R V   D+I+FF +NMVNENLG ICNAHVVH+D S+YGA DE C+KLAELAA+AVD
Sbjct: 897  KLSGRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVD 956

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG+IV +P  LKPK+YPDFMGK + QSYKS KILG+LY+ I DAY  ED   +SE +
Sbjct: 957  FPKTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAY-DEDVANSSEQN 1015

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
              P DV YDMDLEV  + DF+ DAW  KCSY  QL GL+ QYK+  EEEIVTGHVWS+PK
Sbjct: 1016 HVPSDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPK 1075

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
              SRKQGEL+E+LKH+YS LK+EFRQ F+K+DT FE L D+++N+ YE+KASAWYQV+Y 
Sbjct: 1076 YTSRKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYH 1135

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
             +WVKKSL+L GPDG G   V+LSFAWI ADYLARIK++     N D   KPIN L  YL
Sbjct: 1136 PDWVKKSLDLHGPDGPGDV-VMLSFAWIAADYLARIKIKRREVSNIDPK-KPINILTKYL 1193

Query: 452  A 450
            A
Sbjct: 1194 A 1194


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1644 bits (4256), Expect = 0.0
 Identities = 789/1201 (65%), Positives = 965/1201 (80%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M S+ +EK +VVTQ+S GGF  H+ AK   +Y ++EVGV +WRCRLK SWTPPESYP+F+
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGV-VWRCRLKTSWTPPESYPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            +LD+  ++  DDY+KVEPHAFVHFA+P +    ++AAGR +L+ N ++LKV+ GP+NP+ 
Sbjct: 60   ILDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYY 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +N++RR T P+KL+DV L IG +VSRD+  V WRGPP G++FLVDPFDGTCKFCF+R+T 
Sbjct: 120  LNRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK   + A IKCDFK+EFLVR+I EIK+YT+               ++YRTADD+I E
Sbjct: 180  FSFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEE 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
            SV FDLLDDDD WIRTTD TPSG IGRCNTY++ I PR+G +L++A+ +L E+RVP++  
Sbjct: 240  SVPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYV 299

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            +  LR+ DEP F    +DPF+CI +KEG+ F++ F++NA +HKGI NQH+LS  FF+LLR
Sbjct: 300  RWPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLR 359

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  EVN+AALKHI SY+RPVFDAY+RLK V DWL+RNP L K+P +L DIVE+RRL+IT
Sbjct: 360  DQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVIT 419

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PTKA+CL PE ELSNRVLR Y++V+DRFLRVTFMDEGMQ +N NVL+YY   I++ +TS 
Sbjct: 420  PTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTST 479

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
             + QKT VFKRV  +L  GF LCGR Y+FLAFS+NQLRD SAWFFAED +    +V +I 
Sbjct: 480  FFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKT---SVLQIL 536

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
             WMGKFTN+NIAKCAARMGQCFSSTYATVEV   +V+  LPDI+RN Y FSDGIG ITPD
Sbjct: 537  RWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPD 596

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA EVA+KL+L  +PP AYQIR+ GCKGVVACWP + + ++L LR SMNKF S H+ +E+
Sbjct: 597  LAKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEI 656

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLS   V DEVFW MQ +MVSKL+++LV+ +VAF+VLT+SC+E
Sbjct: 657  CSWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSE 716

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN AAIMLSAGF+PQTEPHLR +L+C+RA+QL  LREKARIFV SGRWLMG LDE+GVL
Sbjct: 717  QGNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVL 776

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            E GQCFIQVSNPS+ENCF KHGSRF+E K NF++I+GLVV+AKNPCLHPGD+RILEAVD 
Sbjct: 777  EQGQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDA 836

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            P LHHL DCLVFPQKGERPH +EASGSDLDGDLYFVTWE+ LIPP K+SWPPM+Y P E 
Sbjct: 837  PGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGET 896

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            KE+ R VNH DIIDFF KNMVNE+LGTICNAHVVHADLS+YGALDEKC+ LAELAA AVD
Sbjct: 897  KEIQREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVD 956

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG+IV +P  LKPK+YPDFMGK E QSYKS KILG+LY+ IKD Y  ED   +SE++
Sbjct: 957  FPKTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVY-DEDLSESSEIN 1015

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
            ++  D+ YD DLEV GS D+++DAW  KCSY  QL GLL QYKV+ EEE+VTGH+WS+PK
Sbjct: 1016 LDSPDINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPK 1075

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
              SRK G+LKEKL H+Y  L++EFRQ F+ +D+  E L ++ERN +YE+KASAWYQV+Y 
Sbjct: 1076 YTSRKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYH 1135

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
             +WV+K LELQ  DG     V+LSFAWI ADYLARIK+R  G GN  D  KP+NSL  YL
Sbjct: 1136 PKWVEKKLELQKSDGADPV-VMLSFAWIAADYLARIKIRSQGTGNV-DFSKPVNSLVKYL 1193

Query: 452  A 450
            A
Sbjct: 1194 A 1194


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1629 bits (4218), Expect = 0.0
 Identities = 799/1202 (66%), Positives = 963/1202 (80%), Gaps = 1/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M  E  EK  V  Q+SFGGFD ++ A    +YLE+EVG  +WRCRLK S TP ESYPDF 
Sbjct: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGG-VWRCRLKTSCTPSESYPDFS 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + +T ++   DDYEKVEPHAFVHFA P  V   ++AAGR +L LNG+ LKV+ GP+NPFR
Sbjct: 60   VTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFR 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+ RT+ P+KL DV + IGTLVSRD+  V+WRGP +G +FLVDPFDGTCKFCFTR+  
Sbjct: 120  LNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            FA K+  ++A IKC+FK+EFLVREI  +K+Y++               ++YRTADDDI  
Sbjct: 180  FALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILV 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
             V FD+LDDDDPWIRTTD TPSG IGRCN+Y+ISI  R+  +L + I +L ERRV V+  
Sbjct: 240  LVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL 299

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
             + + +++EP F V  +DPFFCI ++EG++F++ F++NA +HKGIINQH+LS  FFDLLR
Sbjct: 300  SRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLR 359

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             QS EVN+AALKHI SYK PVFDA +RLKLVQ+WL+++P L K P ++ DIVEVRRL+IT
Sbjct: 360  GQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVIT 419

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PTKAYCLPPE ELSNRVLR Y+D++DRFLRVTFMDEG+Q +N NVLSY+  PI++ IT N
Sbjct: 420  PTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLN 479

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++ QKT VFKRV  +L  GF LCGR ++FLAFSS+QLRD SAWFF+ED +    +V +I+
Sbjct: 480  SFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT---SVLDIK 536

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
             WMG+FT+KNIAKCAARMGQCFSSTYATVEV   +VD +LPDIKRN Y FSDGIG ITPD
Sbjct: 537  KWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPD 596

Query: 2252 LALEVAEKLQLQ-DSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVE 2076
            LA+EVA+KL+L  + PP AYQIR+ GCKGVVACWPAK + I++ LRESMNKF S H+ +E
Sbjct: 597  LAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLE 656

Query: 2075 VCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCA 1896
            +CSWTR QPGFLNRQI+TLLS L V DE+FW+MQ SM+SKL+QMLV+++VAF+VLTA+CA
Sbjct: 657  ICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACA 716

Query: 1895 EQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGV 1716
            EQGNTAAIMLSAGF PQTEPHLR ML+CIRAAQL  LREKARIFV +GRWLMGCLDE+GV
Sbjct: 717  EQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGV 776

Query: 1715 LEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVD 1536
            LE GQCFIQVS P L NCF KHGSRF+E K   Q+IKG VV+AKNPCLHPGD+RILEAVD
Sbjct: 777  LEGGQCFIQVSEPFLGNCFSKHGSRFAETK-KLQVIKGFVVIAKNPCLHPGDIRILEAVD 835

Query: 1535 CPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAE 1356
             PELHHL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SWPPMEY  AE
Sbjct: 836  HPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAE 895

Query: 1355 VKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAV 1176
             K L RPV+  DII+FF K+MVNENLGTICNAHVVHAD S+YGALDE C+ LAELAA AV
Sbjct: 896  AKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAV 955

Query: 1175 DFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASEL 996
            DFPKTG+IV +P  LKPK+YPDFMGK   QSYKS KILG+LY+  KDAY  ED   +SE+
Sbjct: 956  DFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAY-DEDISVSSEV 1014

Query: 995  DINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLP 816
            DINP D+ YD DLEV  S DF+ DAW  KCSY GQL GLL QYKV  EEE+VTGH+WS+P
Sbjct: 1015 DINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMP 1074

Query: 815  KSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSY 636
            K NSRKQGELKE+LKH+YS L++EFRQ F+K+D++ E L ++E+NA++E+KASAWYQV+Y
Sbjct: 1075 KYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTY 1134

Query: 635  RSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANY 456
              EWVKKSL+LQ  D   ++ V+LSFAWI  DYLARIK+R     N D   KP+N LA Y
Sbjct: 1135 HPEWVKKSLDLQEQD-SARSVVLLSFAWIANDYLARIKIRCREMANIDTS-KPVNYLARY 1192

Query: 455  LA 450
            +A
Sbjct: 1193 VA 1194


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1621 bits (4197), Expect = 0.0
 Identities = 790/1201 (65%), Positives = 956/1201 (79%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M  E +EK +VVTQ+S GGFD H+ AK    +LE EVG+ ++RCRLK S T  ESYP F+
Sbjct: 1    MELEGSEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGI-VYRCRLKTSCTARESYPTFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
             +++E++  + D  +VEPHAFVHFA+P+SV   L+    N LMLN + LKVT GP+  +R
Sbjct: 60   NINSENIMESIDIRQVEPHAFVHFASPESVNWTLS----NPLMLNNQTLKVTLGPETLYR 115

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT P KL DV + IG LV RD+  V+WRGP  G++FLVDPFDG CKFCFTR+T 
Sbjct: 116  MNQRRRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTA 175

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK+  K A +KCDFK+EFLVR+I EIK+YTD               ++YRTADDDI  
Sbjct: 176  FSFKDMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEV 235

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
            SV FDLLDDDDPWIRTTD TPSG IGRCN+Y++SIPPR+G +L++A+ +L ERRV     
Sbjct: 236  SVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPL 295

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            ++ LR++ EP F+V  +DP F +  K G+ F++ F+LN  VHKGI NQH +S   FDL R
Sbjct: 296  RKALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFR 355

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  E+N+AALKHI SYKRPVFDAY +LK VQ+WL+RNP+LLK P +L DI EVRRL+IT
Sbjct: 356  NQPREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVIT 415

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PT+AYCLPPE ELSNRVLR Y++VSDRFLRVTFMDEGMQ +N NVL+YYP PI+K +TSN
Sbjct: 416  PTRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSN 475

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            +  QKT VFKRV  LL  GF LCG+ Y+FLAFSSNQLRDRSAWFFAED +   +TV  I+
Sbjct: 476  STSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGK---ITVNGIK 532

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
             WMG+F N+NIAKCAARMGQCFSSTYATVEV L +V+ DL +I+RN Y FSDGIG+ITPD
Sbjct: 533  KWMGRFNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPD 592

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA EVAEKL+L  +PPSAYQIR+ GCKGVVACWP K + I+L LR SMNKF S H+++E+
Sbjct: 593  LAKEVAEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEI 652

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQIVTLLS L V DE+FW MQ +M+ KL+QML + +VAF+VLTASC E
Sbjct: 653  CSWTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPE 712

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN  AIMLSAGF+PQ+EPHL+ ML+CIRAAQL  LREKARIFV  GRWLMGCLDE+GVL
Sbjct: 713  QGNVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVL 772

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            E GQCFIQVS PSLENCF KHGSRFSE KNN ++IKG VV+AKNPCLHPGD+RILEAVD 
Sbjct: 773  EQGQCFIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDV 832

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            P LHHL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SW PM+Y PA+ 
Sbjct: 833  PGLHHLYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKP 892

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            + LPR V   DIIDFF++NMVNE+LG ICNAHVVHADLSDYGALDEKC+ LAELAA+AVD
Sbjct: 893  RTLPRDVTQKDIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVD 952

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG IV +P  LKPKIYPDFMGK E QSYKS KI+G+LY+ IKD Y  +D  P+SEL+
Sbjct: 953  FPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEY-SDDVSPSSELN 1011

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
            I   ++ +D DLEV G+ DF++DAW  KCSY GQL GL+ QYKV+ EEE+VTG +WS+PK
Sbjct: 1012 IVSSNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPK 1071

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
             NSRK+G+LKE+LKH+Y+ L++EFRQ F+K+D++FE L D+E+N +YEK+ASAWYQ++Y 
Sbjct: 1072 HNSRKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYH 1131

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
             +WVKKS ++     E +  V+LSFAWI ADYLARIK+R  G G+ D   KPINSL  YL
Sbjct: 1132 PKWVKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADS-TKPINSLGKYL 1190

Query: 452  A 450
            A
Sbjct: 1191 A 1191


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1620 bits (4194), Expect = 0.0
 Identities = 781/1201 (65%), Positives = 963/1201 (80%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M  E + K++VVTQ+S GGFD H+ A+   +YLE+EVG L+WRCRLK SWTPPESYP+F+
Sbjct: 1    MELEGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVG-LVWRCRLKTSWTPPESYPNFE 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + DT  ++  D+Y+KVEPHAFVHFA+P +V   ++AAGR +L  N ++LKV+ GP+NP+ 
Sbjct: 60   ITDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYY 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +N++RR T P+KL DV L IGTL S D+ +V WRGPP+G+ FLVDPFD TCKFCF+R+T 
Sbjct: 120  LNRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK  N++A IKCDFK+EFLVREI E+K+Y++               ++YRTADDD  +
Sbjct: 180  FSFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEK 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
            +V F LLDDDD WIRTTD T SG IGRCNTY++ + PR+G +L++A+ +L ERRVPVE  
Sbjct: 240  TVPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDL 299

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
            +  LR++DEP F    +D F+ I +KEG+ F++ F++NA +HKGI NQH+LS  FF LLR
Sbjct: 300  RSQLRIRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLR 358

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             QS EVN+AALKHI SY+ PV+DAY RLK V DWL++NP+L K+P +L DIVE+RRL+IT
Sbjct: 359  NQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVIT 418

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            PTKAYCL PE ELSNRVLR Y+DV+DRFLRVTFMDEGMQ++N NVL+YY   I++ +TS 
Sbjct: 419  PTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTST 478

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++ QKT VFKRV  +L  GF LCGR Y+FLAFS+NQLRDR+AWFFAED +   + V +I 
Sbjct: 479  SFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGK---INVLQII 535

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
             WMGKFTN+NIAKCAARMGQCFSSTYATVEV   QV+  LPDIKRN Y+FSDGIG ITPD
Sbjct: 536  GWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPD 595

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA+EVA+KL+L  +PP AYQIR+ GCKGVVACWP + ++I+L LR SM KF S H+ +E+
Sbjct: 596  LAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEI 655

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLS L V DEVFW MQ SMVSKLD++LV+ + AF+V+ +SC E
Sbjct: 656  CSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGE 715

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QG+T AIMLSAGF+PQTEPHLR ML+C+RA+QL  LREK+RIF+ SGRWLMG LDE+GVL
Sbjct: 716  QGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVL 775

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            E GQCFIQVSNPSL+NCF KHGSRF+E K NF++IKGLVV+AKNPCLHPGD+RILEAVD 
Sbjct: 776  EQGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDA 835

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            P LHHL DCLVFPQKGERPH +EASGSDLDGDLYFVTWEE LIPPSK+S  PM+Y     
Sbjct: 836  PGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAP 895

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            +EL R V H DII+FF+KNMVNE+LG+ICNAHVVH+DLS++GA DEKC+ LAELAA+AVD
Sbjct: 896  RELNRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVD 955

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG+IV +P QLKPK+YPDFMGK E QSYKS KILG+LY+ IKDAY K+ S  +SEL+
Sbjct: 956  FPKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVS-ESSELN 1014

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
                D+ YD DLE+ GS D++ DAW  KCSY GQL GLL QYKV+ EEE+VTG +WS+PK
Sbjct: 1015 FGASDINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPK 1074

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
              S+K G+LKEKL H+Y  L++EFRQ F+ +D+ FE L ++E+N +YE+KASAWYQV+Y 
Sbjct: 1075 YASKKLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYH 1134

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
             EWV+K LE Q PDG+ +  V+LSFAWI ADYLARIKVRH G  N  D  KP+NSL  YL
Sbjct: 1135 PEWVQKKLEFQKPDGD-EGVVMLSFAWIAADYLARIKVRHQGTENL-DFAKPVNSLVRYL 1192

Query: 452  A 450
            A
Sbjct: 1193 A 1193


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1609 bits (4167), Expect = 0.0
 Identities = 782/1202 (65%), Positives = 965/1202 (80%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE +EK  VVTQ+S GGFD  + AKM ++YLE++VG  +WRCRLK S TPP+SYP F 
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQ-VWRCRLKISSTPPDSYPTFD 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + D E ++   DYEKV PHAFVHFA+ +S    L AAG N+L+L  K L V+ GP+NP+R
Sbjct: 60   V-DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYR 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT+P+K +DV + +G LVS+DD VV WRGP TG++FLVDPF+G CK  FT++T 
Sbjct: 119  LNQRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+F+ + ++A IKC+FKIEFLVREI EIK+  D               ++YRTADDDI E
Sbjct: 179  FSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEE 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDD WIRTTD+T SG IGRCNTY+ISI PRNGP  E+A+ +    RVP+   
Sbjct: 239  SVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEM 298

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
            C++++LRV+DEP F V  +DPFFC Q+ EG++F V F++NA +HKGI+NQH+++  FF L
Sbjct: 299  CNRKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYL 357

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR+   EVN+AALKH+ SYK PV DA ++L  ++ WL++NP+LL+   +L DIVEVRRL+
Sbjct: 358  LRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLV 417

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITPTKAYCLPP  ELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL+YY   I++ IT
Sbjct: 418  ITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREIT 477

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN+ PQ+T++F+RV  +L +GF LCGR Y+FLAFS+NQLRDRSAWFFAED + R   V  
Sbjct: 478  SNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIR---VPG 534

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I +WMG+F+N+N+AKCAARMGQCFSSTYATVEV   +V+S+LPDI+RN Y FSDGIG+I+
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLA+EVAEKL L  +PPSAYQIR+ GCKGVVACWP K++ I+L LR SM KF S H+++
Sbjct: 595  ADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLS+L+V D +FW MQ  M+S LD+MLV+++VAFDV+TASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GNTAAIMLSAGF+PQ+EPHLR MLS IRA+QLGDLR KARIFV SGRWLMGCLDE+G
Sbjct: 715  AEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
             LE GQCFIQVS+PSLENCF KHG +FS++K N Q++KGLVV+AKNPCLHPGDVRILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P LHHL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SW PM Y PA
Sbjct: 835  DVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPA 894

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            EVK++ R VNHMDIIDFF+KNMV E+LG ICNAHVVHADLS++GALDEKC+KLAELAALA
Sbjct: 895  EVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALA 954

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK E QSYKS+KILGKLY+ +KD    E    A  
Sbjct: 955  VDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAG- 1013

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L++ P D+ YD  LE+ GS  F++DAW  KCSY GQL GLL QYKV  EEE+VTGH+WS+
Sbjct: 1014 LELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK +++KQGELKE+LKHAY+ L++EFR  F++++ +F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WV +SLELQ PD    + V+LSFAWI ADYLARIK+RH G     D  KPINSL  
Sbjct: 1134 YNPHWVARSLELQLPDAV-SSTVMLSFAWIAADYLARIKIRHRGL-QYSDSTKPINSLGR 1191

Query: 458  YL 453
            YL
Sbjct: 1192 YL 1193


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1607 bits (4160), Expect = 0.0
 Identities = 780/1203 (64%), Positives = 968/1203 (80%), Gaps = 2/1203 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE +EK+ VVTQ+S GGFD  + AKM ++YLE++VG  +WRCRLK S TPP+SYP + 
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQ-VWRCRLKISSTPPDSYPTYD 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
             +D E ++  ++YEKV PHAFVHFA+ +S    L AAG N+L+L  K L V+ GP+NP+R
Sbjct: 60   -IDAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYR 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT+P+K +DV + +G LVS+ D VV WRGP TG++FLVDPF+GTCK  FT++TV
Sbjct: 119  LNQRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTV 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+F+ + ++A IKC+FKIEFLVREI EIK+  D               ++YRTADDDI E
Sbjct: 179  FSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEE 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDD WIRTTD+T SG IGRCNTY+ISI PRNGP  E+A+ +    RVP+   
Sbjct: 239  SVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEM 298

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
            C++++LRV+DEP F V  +DPFFC Q+ EG++F V F+ NA +HKGI+NQH++   FF L
Sbjct: 299  CNRKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVLFLANAVLHKGIVNQHQMINEFFYL 357

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR+   EVN+AALKH+ SYK PV DA ++L  +Q WL++NP+LL+   +L DIVEVRRL+
Sbjct: 358  LRSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLV 417

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITPTKAYCLPP  ELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL+YY   I++ IT
Sbjct: 418  ITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREIT 477

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN+ PQ+T++F+RV  +L +GF LCGR Y+FLAFS+NQLRDRSAWFFAED + R   V  
Sbjct: 478  SNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIR---VPG 534

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I +WMG+F+N+N+AKCAARMGQCFSSTYATVEV   +V+S+LPDI+RN Y FSDGIG+I+
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLA+EVAEKL L  +PP+AYQIR+ GCKGVVACWP K++ I+L LR SM KF S H+++
Sbjct: 595  ADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLS+L+V D +FW MQ  M++ LD+MLV+++VAFDV+TASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GNTAA+MLSAGF+PQ+EPHLR MLS IRA+QLGDLR KARIFV SGRWLMGCLDE+G
Sbjct: 715  AEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
             LE GQCFIQVS+PSLENCF KHGS+FS++K N Q++KGLVV+AKNPCLHPGDVRILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P L HL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E +IPPSK+SW PM Y PA
Sbjct: 835  DVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPA 894

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            EVK+L R VNHMDIIDFF+KNMV E+LG ICNAHVVHADLS++GALDEKC+KLAELAALA
Sbjct: 895  EVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALA 954

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK E QSYKS+KILGKLY+ +KD    E    A  
Sbjct: 955  VDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAG- 1013

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L++ P+D+ YD  LE+ GS  F++DAW  KCSY GQL GLL QYKV  EEE+VTGH+WS+
Sbjct: 1014 LEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSM 1073

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK +++KQGELKE+LKHAY+ L++EFR  F++++ +F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WV +SLELQ PD    + V+LSFAWI ADYLARIK+RH G    D   KPINSL  
Sbjct: 1134 YHPHWVARSLELQIPDAV-SSTVMLSFAWIAADYLARIKIRHRGLPYSDS-TKPINSLGR 1191

Query: 458  YLA 450
            YLA
Sbjct: 1192 YLA 1194


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1605 bits (4156), Expect = 0.0
 Identities = 783/1202 (65%), Positives = 964/1202 (80%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE +EK  VVTQ+S GGFD  + AKM ++YLE++VG  +WRCRLK S TPP+SYP + 
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQ-VWRCRLKISATPPDSYPTYD 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
             +D E +    DYEKV PHAFVHFA+ +S    L AAG N+L+L  K L V+ GP+NP+R
Sbjct: 60   -IDAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYR 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT+P+K +DV + +G LVS+DD VV WRGP TG++FLVDPF+GTCK  FT++T 
Sbjct: 119  LNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+F+ + ++A IKC+FKIEFLVREI EIK+  D               ++YRTADDDI E
Sbjct: 179  FSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEE 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDD WIRTTD+T SG IGRCNTY+ISI PRNGP  E+A+ +   RRVP+   
Sbjct: 239  SVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEM 298

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
            C++++LRVKDEP F V  +DPFFC Q+ EG++F V F++NA +HKGI+NQH+++  FF L
Sbjct: 299  CNRKMLRVKDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYL 357

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR++  EVN+AALKH+ SYK PV DA ++L  +Q WL++NP+LL+   +L DIVEVRRL+
Sbjct: 358  LRSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLV 417

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITPTKAYCLPP  ELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL+YY   I++ IT
Sbjct: 418  ITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREIT 477

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN+ PQ+T++F+RV  +L +GF LCGR Y+FLAFS+NQLRDRSAWFFAED + R   V  
Sbjct: 478  SNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIR---VPG 534

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I +WMG+F+N+N+AKCAARMGQCFSSTYATVEV   +V+S+LPDI+RN Y FSDGIG+I+
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLA+EVAEKL L  +PPSAYQIR+ G KGVVACWP K++ I L LR SM KF S H+++
Sbjct: 595  ADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLS+L+V D +FW MQ  M+S LD+MLV+++VAFDV+TASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GNTAA+MLSAGF+PQ+EPHLR MLS IRA+QLGDLR KARIFV SGRWLMGCLDE+G
Sbjct: 715  AEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
             LE GQCFIQVS+PSLENCF KHG +FS++K N Q++KGLVV+AKNPCLHPGDVRILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P L HL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SW PM Y PA
Sbjct: 835  DVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPA 894

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            EVK+L R VNHMDIIDFF+KNMV E+LG ICNAHVVHADLS++GALDEKC+KLAELAALA
Sbjct: 895  EVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALA 954

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK E QSYKS+KILGKLY+ +KD    E    A  
Sbjct: 955  VDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAG- 1013

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L++ P+D+ YD  L + GS  F++DAW  KCSY GQL GLL QYKV  EEE+VTGH+WS+
Sbjct: 1014 LEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK +++KQGELKE+LKHAY+ L++EFR  F+++D +F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WV +SLELQ PD    + V+LSFAWI ADYLARIK+RH G     D  KPINSL  
Sbjct: 1134 YNPHWVARSLELQLPDAI-SSTVMLSFAWIAADYLARIKIRHRGL-QYSDSTKPINSLGR 1191

Query: 458  YL 453
            YL
Sbjct: 1192 YL 1193


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1605 bits (4155), Expect = 0.0
 Identities = 782/1202 (65%), Positives = 959/1202 (79%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE +EK  VVTQ+S GGFD  + AKM ++YLE++VG  +WRCRLK S TPP+SYP + 
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQ-VWRCRLKISATPPDSYPTYD 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + D   +    DYEKV PHAFVHFA+ +S    L AAG N L+L  K L V+ GP+NP+R
Sbjct: 60   V-DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYR 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT+P+K +DV + +G LVS+DD VV WRGP TG++F VDPF+G CK  FT++T 
Sbjct: 119  LNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+F+ + K+A IKC+FKIEF+VREI EIK++ D               ++YRTADDDI E
Sbjct: 179  FSFRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEE 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDD WIRTTD+T SG IGRCNTY+ISI PRNGP  E+A+ +    RVP+   
Sbjct: 239  SVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEM 298

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
            C++++LRV+DEP F V  +DPFFC Q+ EG++F V F++NA +HKGI+NQH+++  FF L
Sbjct: 299  CNRKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYL 357

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR+   EVN+AALKH+ SYK PV DA ++L  +Q WL++NP+LL+   +L DIVEVRRL+
Sbjct: 358  LRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLV 417

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITPTKAYCLPP  ELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL+YY   I++ IT
Sbjct: 418  ITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREIT 477

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN+ PQ+T++F+RV  +L +GF LCGR Y+FLAFS+NQLRDRSAWFFAED + R   V  
Sbjct: 478  SNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIR---VPG 534

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I +WMG+F+N+N+AKCAARMGQCFSSTYATVEV   +V+S+LPDI+RN Y FSDGIG+I+
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLALEVAEKL L  +PPSAYQIR+ GCKGVVACWP K++ I L LR SM KF S H+++
Sbjct: 595  ADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLS+L+V D +FW MQ  M+S L++MLV+++VAFDV+TASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GNTAAIMLSAGF+PQ+EPHLR MLS IRA+QLGDLR KARIFV SGRWLMGCLDE+G
Sbjct: 715  AEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
             LE GQCFIQVS+PSLENCF KHG +FS++K N Q++KGLVV+AKNPCLHPGDVRILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P LHHL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SW PM Y PA
Sbjct: 835  DVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPA 894

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            EVK+L R VNHMDIIDFF+KNMV E+LG ICNAHVVHADLS++GALDEKC+KLAELAALA
Sbjct: 895  EVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALA 954

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK E QSYKS+KILGKLY+ +KD    E    A  
Sbjct: 955  VDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAG- 1013

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L++ P D+ YD  LE+ GS  FM DAW  KCSY GQL GLL QYKV  EEE+VTGH+WS+
Sbjct: 1014 LELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK +++KQGELKE+LKHAY+ L++EFR  F+++D +F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1074 PKYSAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WV +SLELQ PD    + V+LSFAWI ADYLARI +RH G     D  KPINSL  
Sbjct: 1134 YNPHWVARSLELQLPDAV-SSTVMLSFAWIAADYLARINIRHRGL-QYSDSTKPINSLGR 1191

Query: 458  YL 453
            YL
Sbjct: 1192 YL 1193


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1605 bits (4155), Expect = 0.0
 Identities = 781/1202 (64%), Positives = 965/1202 (80%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE +EK+ VVTQ+S GGFD  + AKM ++YLE++VG  +WRCRLK S TPP+SYP + 
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQ-VWRCRLKISSTPPDSYPTYD 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
             +D E ++  ++YEKV PHAFVHFA+ +S    L AAG N+L+L  K L V+ GP+NP+R
Sbjct: 60   -IDAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYR 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT+P+K +DV + +G LVS+DD VV WRGP TG++F VDPF+GTCK  FT++T 
Sbjct: 119  LNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+F+ + ++A IKC+FKIEF+VREI EIK+  D               ++YRTADDDI E
Sbjct: 179  FSFRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEE 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDD WIRTTD+T SG IGRCNTY+ISI PRNGP  E+A+ +    RVP+   
Sbjct: 239  SVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEM 298

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
            C++++LRVKDEP F V  +DPFFC Q+ EG++F V F++NA +HKGI+NQH+++  FF L
Sbjct: 299  CNRKMLRVKDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYL 357

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR++  EVN AALKH+ SYK PV DA ++L  +Q WL++NP+LL    +L DIVEVRRL+
Sbjct: 358  LRSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLV 417

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITPTKAYCLPP  ELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL+YY   I++ IT
Sbjct: 418  ITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREIT 477

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN+ PQ+T++F+RV  +L +GF LCGR Y+FLAFS+NQLRDRSAWFFAED + R   V  
Sbjct: 478  SNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIR---VPG 534

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I +WMG+F+N+N+AKCAARMGQCFSSTYATVEV   +V+S+LPDI+RN Y FSDGIG+I+
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMIS 594

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLA+EVAEKL L  +PPSAYQIR+ GCKGVVACWP K++ I+L LR SM KF S H+++
Sbjct: 595  ADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLS+L+V D +FW MQ  M+S LD+MLV+++VAFDV+TASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GNTAAIMLSAGF+PQ+EPHLR MLS IRA+QLGDLR KARIFV SGRWLMGCLDE+G
Sbjct: 715  AEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
             LE GQCFIQVS+PSLENCF KHG +FS++K N Q++KGLVV+AKNPCLHPGDVRILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P L HL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SW PM Y PA
Sbjct: 835  DVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPA 894

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            EVK+L R VNHMDIIDFF+KNMV E+LG ICNAHVVHADLS++GALDEKC+KLAELAALA
Sbjct: 895  EVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALA 954

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK E QSYKS+KILGKLY+ +KD    E    A  
Sbjct: 955  VDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAG- 1013

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L++ P+D+ YD  LE+ GS  F++DAW  KCSY GQL GLL QYKV  EEE+VTGH+WS+
Sbjct: 1014 LEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSM 1073

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK +++KQGELKE+LKHAY+ L++EFR  F+++D +F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1074 PKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WV +SLELQ PD      V+LSFAWI ADYLARIK+RH  +    D  KPINSL  
Sbjct: 1134 YHPHWVARSLELQLPDAVSNT-VMLSFAWIAADYLARIKIRH-RRLQYSDSTKPINSLGR 1191

Query: 458  YL 453
            YL
Sbjct: 1192 YL 1193


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1603 bits (4151), Expect = 0.0
 Identities = 781/1202 (64%), Positives = 964/1202 (80%), Gaps = 2/1202 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE  EK+ VVTQ+S GGFD  + AKM ++YLE++VG  +WRCRLK S TPP+SYP + 
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQ-VWRCRLKISSTPPDSYPTYD 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
             +D E ++  ++YEKV PHAFVHFA+ +S    L AAG N+L+L  K L V+ GP+NP+R
Sbjct: 60   -IDAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYR 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT+P+K +DV + +G LVS+DD VV WRGP TG++FLVDPF+GTCK  FT++T 
Sbjct: 119  LNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+F+ + ++A IKC+FKIEFLVREI EIK+  D               ++YRTADDDI E
Sbjct: 179  FSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEE 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDD WIRTTD+T SG IGRCNTY+ISI PRNGP  E+A+ +   RRVP+   
Sbjct: 239  SVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEM 298

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
            C++++LRVKDEP F V  +DPFFC Q+ EG++F V F++NA +HKGI+NQH+++  FF L
Sbjct: 299  CNRKMLRVKDEPDFGVSMSDPFFCFQN-EGISFRVLFLVNAVLHKGIVNQHQMANEFFYL 357

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            LR+   EVN AALKH+ SYK PV DA ++L  +Q WL++NP+LL    +L DIVEVRRL+
Sbjct: 358  LRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLV 417

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITPTKAYCLPP  ELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL+YY   I++ IT
Sbjct: 418  ITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREIT 477

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN+ PQ+T++F+RV  +L +GF LCGR Y+FLAFS+NQLRDRSAWFFAED + R   V  
Sbjct: 478  SNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIR---VPG 534

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            I +WMG+F+N+N+AKCAARMGQCFSSTYATVEV   +V+S+LPDI+RN Y FSDGIG+I+
Sbjct: 535  IISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMIS 594

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLA+EVAEKL L  +PPSAYQIR+ GCKGVVACWP K++ I+L LR SM KF S H+++
Sbjct: 595  ADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+CSWTR QPGFLNRQIVTLLS+L+V D +FW MQ  M+S LD+MLV+++VAFDV+TASC
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GNTAA+MLSAGF+PQ+EPHLR MLS IRA+QLGDLR KARIFV SGRWLMGCLDE+G
Sbjct: 715  AEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
             LE GQCFIQVS+PSLENCF KHG +FS++K N Q++KGLVV+AKNPCLHPGDVRILEAV
Sbjct: 775  ELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAV 834

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P L HL DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSK+SW PM Y PA
Sbjct: 835  DVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPA 894

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            EVK+L R VNHMDIIDFF+KNMV E+LG ICNAHVVHADLS++GALDEKC+KLAELAALA
Sbjct: 895  EVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALA 954

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK E QSYKS+KILGKLY+ +KD    E    A  
Sbjct: 955  VDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAG- 1013

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L++ P+D+ YD  LE+ GS  F++DAW  KCSY GQL GLL QYKV  EEE+VTG++WS+
Sbjct: 1014 LEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSM 1073

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK N++KQGELKE+LKHAY+ L++EFR  F++++ +F+ L D+E+N +YE+KASAWYQV+
Sbjct: 1074 PKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVT 1133

Query: 638  YRSEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLAN 459
            Y   WV +SLELQ  D      V+LSFAWI ADYLARIK+RH  +    D  KPINSL  
Sbjct: 1134 YHPHWVARSLELQLADAVSNT-VMLSFAWIAADYLARIKIRH-RRLQYSDSTKPINSLGR 1191

Query: 458  YL 453
            YL
Sbjct: 1192 YL 1193


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score = 1593 bits (4126), Expect = 0.0
 Identities = 786/1203 (65%), Positives = 946/1203 (78%), Gaps = 6/1203 (0%)
 Frame = -3

Query: 4037 NEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQMLDTE 3858
            +EK+SVVTQ+S GGFD  + A   A++LE+ +G L++RCRLK SWTPPESYP+F + DT 
Sbjct: 6    SEKESVVTQVSIGGFDSEVKAHDLAEFLENRIG-LVYRCRLKTSWTPPESYPEFNVADTA 64

Query: 3857 DLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFRINQKR 3678
             ++  DDY+KVEPHAFVHFA P+SV   L+A+G  DLM  GK LKV SGPQNP+ +NQ+R
Sbjct: 65   LVKRTDDYKKVEPHAFVHFALPESVTEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 124

Query: 3677 RTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETVFAFKN 3498
            R   P+KL+DV + IGTLVS ++ VV+WRGP  G+N LVDPFD  C+  F+R+T F+ K 
Sbjct: 125  RKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQ 184

Query: 3497 QNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFESVLFD 3318
              K A IKCDFK+EF+VR+I E++RY D               ++YRTADDDI ESV FD
Sbjct: 185  NEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFD 244

Query: 3317 LLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECSKQLLR 3138
            LLDDDDPWIRTTD TPSG IGRCN Y+ISIPPR+G +L +A+ +L  +RV     K+ LR
Sbjct: 245  LLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLR 304

Query: 3137 VKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLRTQSAE 2958
            ++DEP F V  +D FF I  +EG+ FD+ F++NA +HKGI+N + LS RFF++LR Q  E
Sbjct: 305  IQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQE 364

Query: 2957 VNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIITPTKAY 2778
            VN+AALKH+CSYKRPVFDA +RLK VQ+WL+RNP+L ++  +  DIVEVRRL+ITPT+AY
Sbjct: 365  VNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVITPTRAY 424

Query: 2777 CLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSNTYPQK 2598
            C+PPE ELSNRVLR YR+VS+RFLRVTFMDEGMQ +N N L+YY  PI+K ITSN++PQK
Sbjct: 425  CVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFPQK 484

Query: 2597 TSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIRNWMGK 2418
            T ++KRV  +L++GF  C R Y FLAFSSNQLRDRSAWFFAED    ++    IR+WMG+
Sbjct: 485  TRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDD---KIKCDGIRDWMGR 541

Query: 2417 FTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPDLALEV 2238
            F+N+N+AKCAARMGQCFSSTYATVEV   +V+S LPDI+RN Y FSDGIGIITPDLA EV
Sbjct: 542  FSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNKYVFSDGIGIITPDLAGEV 601

Query: 2237 AEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEVCSWTR 2058
            AEKL+L D  PSAYQIR+ G KGVVA WPAK + I+L LR SMNKF S+H+ +E+C+WTR
Sbjct: 602  AEKLKL-DIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAWTR 660

Query: 2057 LQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAEQGNTA 1878
             QPGFLNRQI+TLLSALEVSDEVFW MQ  M+SKL+QMLVN +VAFDVLT SCAE GN A
Sbjct: 661  FQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAA 720

Query: 1877 AIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVLEHGQC 1698
            AIMLS GF PQTEPHL+ ML+ IRAAQL  LREK+RIFV SGRWLMG LDE+GVLE GQC
Sbjct: 721  AIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQC 780

Query: 1697 FIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDCPELHH 1518
            F+QVS PSLENCF KHGSRFSE K + Q++KG VV+AKNPCLHPGDVRILEA+D P+LHH
Sbjct: 781  FVQVSTPSLENCFSKHGSRFSETK-SLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHH 839

Query: 1517 LSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEVKELPR 1338
            L DCLVFPQKG+RPH +EASGSDLDGDLYFVTW++ LIPPSKRSW PMEY   E K   R
Sbjct: 840  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESKLQTR 899

Query: 1337 PVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVDFPKTG 1158
             V   DIIDFF +NMVNENLG ICNAHVVHAD SDYGALDEKC+ LAE AA AVDFPKTG
Sbjct: 900  KVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDYGALDEKCIILAEKAAAAVDFPKTG 959

Query: 1157 RIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELDINPRD 978
            ++VI+P++LKPK+YPDFMGK +  SYKS+KILG+LY+ IKDAY K+    A EL+     
Sbjct: 960  KLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKD--IDAPELNYVTGA 1017

Query: 977  VIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPKSNSRK 798
            + YD +LEV GS DF+ DAW  KCSY GQL GLL QYKV+ EEE+VTG +WS+PK NSRK
Sbjct: 1018 IPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRK 1077

Query: 797  QGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYRSEWVK 618
            QGELKE+LKH+YS LK+EFRQ F+KLD++   L +EE+N +YEKKASAWYQV+Y   WVK
Sbjct: 1078 QGELKERLKHSYSALKKEFRQTFEKLDSDVRELGEEEKNLLYEKKASAWYQVTYHPTWVK 1137

Query: 617  KSLELQGPDGEGQAD------VILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANY 456
            KSLELQ    E          V+LSF WI  DYLAR K+R+ G G + D  KP+ SLA Y
Sbjct: 1138 KSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRGFG-RFDSTKPVGSLAKY 1196

Query: 455  LAK 447
            L++
Sbjct: 1197 LSE 1199


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1593 bits (4125), Expect = 0.0
 Identities = 765/1204 (63%), Positives = 945/1204 (78%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE  EK  VVTQ+SFGGFD  + A+    YLE E+G L+ RCRLK SWTPPESYPDF+
Sbjct: 1    MGSEEGEK-IVVTQVSFGGFDSDVKARDLMSYLESEIG-LVDRCRLKTSWTPPESYPDFE 58

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + +  ++  +DDY+KV PHAFVHF +PDS    L+AAGR +L+ N K+LK + GP++PF 
Sbjct: 59   VSNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFH 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            INQ+RRT +P+KL+DV++ IG L   D   V+WRGP +GM+FLVDPFDGTCKFCFT++T 
Sbjct: 119  INQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK+ NK+  +KCD+K+EF+VR+I +I RYTD               ++YRTADDDI +
Sbjct: 179  FSFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAK 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
             V +DLLDDDDPWIRTTD T SG IGRCNT+++S+PPR G +L  A+ +L E+RV     
Sbjct: 239  LVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSL 298

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
             +  ++ +EP + V   D FFCI +K+ ++F++ F++NA +HKGIINQH++S RFFDLLR
Sbjct: 299  NRPPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLR 358

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  EVN+AAL HI +++RPV DA ++LKLVQ+WL++NP LLK   +L DIVE+RRL+IT
Sbjct: 359  NQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVIT 418

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            P+KAYC PPE ELSNRVLR Y+DV+DRFLRVTFMDEGM+ +N +V +YY  PI+K ITS+
Sbjct: 419  PSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSS 478

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++PQKT +F R+  +LK GF LCGR Y+FLA+SSNQLRD+SAWFFAE K    ++V  I 
Sbjct: 479  SFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKS---ISVDAIL 535

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
             WMGKFTNKN+AKCAAR+GQCFSSTYAT+EV  + V+ DL D++RN Y FSDGIG ITPD
Sbjct: 536  GWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPD 595

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA EVA+KL++  SPP AYQIR+ G KGVVA WP+K + I+L LR SMNKF S H ++E+
Sbjct: 596  LAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEI 655

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLS L V DE+FW+MQ +M+SKLD+M+ + +VAF+VLTASCAE
Sbjct: 656  CSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAE 715

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN AAIMLSAGF+P+TEPHLR ML CIRAAQL  LREKARIFV  GRW MGC DE GVL
Sbjct: 716  QGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVL 775

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            + GQCFIQVS P LE CF KHGS F+E KNN  +++G VV+AKNPCLHPGDVRILEAVD 
Sbjct: 776  QEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDA 835

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            PELHHL DCLVFP+ GERPH +EASGSDLDGDLYF TW+  LIPPSK+SWPPMEY PAEV
Sbjct: 836  PELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEV 895

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            K L R +   DI++FF KNM+NE+LGTICNAHVVHAD S +GALDE C++L+ELAA AVD
Sbjct: 896  KTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVD 955

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG++V +P  LKPK+YPDFMGK  +QSYKS KILGK+Y+ I+DAY  +D   + EL+
Sbjct: 956  FPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELN 1015

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
              P DV YD+DLEV G+EDF+ +AW  KCSY GQL GLL QYKV  EEEIVTGH+WS+PK
Sbjct: 1016 FTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPK 1075

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
              SRKQGELKEKLKH+YS LK++FRQ F+ L   FE L  +ERNA+YEKKASAWYQV+Y 
Sbjct: 1076 YVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYH 1135

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
              W+KKSLEL+ PD   +A  +LSF WI ADYLARIK++   +    D  KPINSLA+YL
Sbjct: 1136 PTWLKKSLELREPDAP-EAVPMLSFPWIAADYLARIKIK-CRRTKSFDPTKPINSLASYL 1193

Query: 452  AKCM 441
            +  M
Sbjct: 1194 SDRM 1197


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score = 1593 bits (4125), Expect = 0.0
 Identities = 765/1204 (63%), Positives = 945/1204 (78%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            MGSE  EK  VVTQ+SFGGFD  + A+    YLE E+G L+ RCRLK SWTPPESYPDF+
Sbjct: 1    MGSEEGEK-IVVTQVSFGGFDSDVKARDLMSYLESEIG-LVDRCRLKTSWTPPESYPDFE 58

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            + +  ++  +DDY+KV PHAFVHF +PDS    L+AAGR +L+ N K+LK + GP++PF 
Sbjct: 59   VSNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFH 118

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            INQ+RRT +P+KL+DV++ IG L   D   V+WRGP +GM+FLVDPFDGTCKFCFT++T 
Sbjct: 119  INQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTA 178

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK+ NK+  +KCD+K+EF+VR+I +I RYTD               ++YRTADDDI +
Sbjct: 179  FSFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAK 238

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVECS 3153
             V +DLLDDDDPWIRTTD T SG IGRCNT+++S+PPR G +L  A+ +L E+RV     
Sbjct: 239  LVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSL 298

Query: 3152 KQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDLLR 2973
             +  ++ +EP + V   D FFCI +K+ ++F++ F++NA +HKGIINQH++S RFFDLLR
Sbjct: 299  NRPPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLR 358

Query: 2972 TQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLIIT 2793
             Q  EVN+AAL HI +++RPV DA ++LKLVQ+WL++NP LLK   +L DIVE+RRL+IT
Sbjct: 359  NQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVIT 418

Query: 2792 PTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMITSN 2613
            P+KAYC PPE ELSNRVLR Y+DV+DRFLRVTFMDEGM+ +N +V +YY  PI+K ITS+
Sbjct: 419  PSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSS 478

Query: 2612 TYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKEIR 2433
            ++PQKT +F R+  +LK GF LCGR Y+FLA+SSNQLRD+SAWFFAE K    ++V  I 
Sbjct: 479  SFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKS---ISVDAIL 535

Query: 2432 NWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIITPD 2253
             WMGKFTNKN+AKCAAR+GQCFSSTYAT+EV  + V+ DL D++RN Y FSDGIG ITPD
Sbjct: 536  GWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPD 595

Query: 2252 LALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVVEV 2073
            LA EVA+KL++  SPP AYQIR+ G KGVVA WP+K + I+L LR SMNKF S H ++E+
Sbjct: 596  LAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEI 655

Query: 2072 CSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASCAE 1893
            CSWTR QPGFLNRQI+TLLS L V DE+FW+MQ +M+SKLD+M+ + +VAF+VLTASCAE
Sbjct: 656  CSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAE 715

Query: 1892 QGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIGVL 1713
            QGN AAIMLSAGF+P+TEPHLR ML CIRAAQL  LREKARIFV  GRW MGC DE GVL
Sbjct: 716  QGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVL 775

Query: 1712 EHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAVDC 1533
            + GQCFIQVS P LE CF KHGS F+E KNN  +++G VV+AKNPCLHPGDVRILEAVD 
Sbjct: 776  QEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDA 835

Query: 1532 PELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPAEV 1353
            PELHHL DCLVFP+ GERPH +EASGSDLDGDLYF TW+  LIPPSK+SWPPMEY PAEV
Sbjct: 836  PELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEV 895

Query: 1352 KELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALAVD 1173
            K L R +   DI++FF KNM+NE+LGTICNAHVVHAD S +GALDE C++L+ELAA AVD
Sbjct: 896  KTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVD 955

Query: 1172 FPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASELD 993
            FPKTG++V +P  LKPK+YPDFMGK  +QSYKS KILGK+Y+ I+DAY  +D   + EL+
Sbjct: 956  FPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELN 1015

Query: 992  INPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSLPK 813
              P DV YD+DLEV G+EDF+ +AW  KCSY GQL GLL QYKV  EEEIVTGH+WS+PK
Sbjct: 1016 FTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPK 1075

Query: 812  SNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVSYR 633
              SRKQGELKEKLKH+YS LK++FRQ F+ L   FE L  +ERNA+YEKKASAWYQV+Y 
Sbjct: 1076 YVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYH 1135

Query: 632  SEWVKKSLELQGPDGEGQADVILSFAWIPADYLARIKVRHGGKGNKDDMLKPINSLANYL 453
              W+KKSLEL+ PD   +A  +LSF WI ADYLARIK++   +    D  KPINSLA+YL
Sbjct: 1136 PTWLKKSLELREPDAP-EAVPMLSFPWIAADYLARIKIK-CRRTKSFDPTKPINSLASYL 1193

Query: 452  AKCM 441
            +  M
Sbjct: 1194 SDRM 1197


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1592 bits (4122), Expect = 0.0
 Identities = 782/1212 (64%), Positives = 949/1212 (78%), Gaps = 10/1212 (0%)
 Frame = -3

Query: 4052 MGSENNEKKSVVTQLSFGGFDGHITAKMFAQYLEDEVGVLIWRCRLKKSWTPPESYPDFQ 3873
            M  E +EK SVVTQ+S GGF   + A     YLED++G L++RCRLK SWTPPESYP+F 
Sbjct: 1    MDLEGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIG-LVYRCRLKTSWTPPESYPEFN 59

Query: 3872 MLDTEDLENADDYEKVEPHAFVHFATPDSVCSVLNAAGRNDLMLNGKVLKVTSGPQNPFR 3693
            ++DT ++   D+Y+KVEPHAFVHFA+P+SV + LNA+G  DL L  + LKV+ GP+NP+ 
Sbjct: 60   IIDTANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYF 119

Query: 3692 INQKRRTTIPYKLTDVRLSIGTLVSRDDMVVSWRGPPTGMNFLVDPFDGTCKFCFTRETV 3513
            +NQ+RRTT P+K++DV + IGTLVS  +  VSWRGP  G+ FLVDPFDG C+FCF+R+T 
Sbjct: 120  LNQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTA 179

Query: 3512 FAFKNQNKNAKIKCDFKIEFLVREITEIKRYTDXXXXXXXXXXXXXXXLYYRTADDDIFE 3333
            F+FK   K A IKCDF++ FLVR+I EIKRY D               ++YRTADDDI E
Sbjct: 180  FSFKGIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEE 239

Query: 3332 SVLFDLLDDDDPWIRTTDLTPSGVIGRCNTYQISIPPRNGPRLERAIKFLMERRVPVE-- 3159
            SV FDLLDDDDPWIRTTD TPSG IGRCN Y+ISIPPR+G +L +A+ +L  +RV ++  
Sbjct: 240  SVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQEL 299

Query: 3158 CSKQLLRVKDEPGFSVHRADPFFCIQHKEGVAFDVTFMLNAAVHKGIINQHELSGRFFDL 2979
              KQ LR  +EP F V  +D FF I  ++ +AFD+ F++NA VHKGI NQH LS RFF+L
Sbjct: 300  ALKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFEL 359

Query: 2978 LRTQSAEVNIAALKHICSYKRPVFDAYRRLKLVQDWLVRNPRLLKTPAKLSDIVEVRRLI 2799
            L+ Q  E+N+AALKH+CSYKRPVFDA +RLK+VQ+WL+RNP+L +   +L DIVEVRRL+
Sbjct: 360  LKNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLV 419

Query: 2798 ITPTKAYCLPPEAELSNRVLRHYRDVSDRFLRVTFMDEGMQMLNCNVLSYYPPPIMKMIT 2619
            ITP+KAYC+PPE ELSNRVLR +R+VSD FLRVTFMDEGMQ +N N L+YY  PI+K IT
Sbjct: 420  ITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEIT 479

Query: 2618 SNTYPQKTSVFKRVNGLLKQGFELCGRMYTFLAFSSNQLRDRSAWFFAEDKRNRRLTVKE 2439
            SN++ Q+T ++KRV  +L+QGF  CGR Y+FLAFSSNQLRDRSAWFFAEDK    +   +
Sbjct: 480  SNSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDK----IRCDD 535

Query: 2438 IRNWMGKFTNKNIAKCAARMGQCFSSTYATVEVSLDQVDSDLPDIKRNDYNFSDGIGIIT 2259
            IRNWMGKF  +N+AKCAARMGQCFSSTYATVEV+ ++V+S LPD++RN+Y FSDGIG+IT
Sbjct: 536  IRNWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVIT 595

Query: 2258 PDLALEVAEKLQLQDSPPSAYQIRFGGCKGVVACWPAKDNKIKLHLRESMNKFISTHSVV 2079
             DLA EVAEKL+L D+ PSAYQIR+ G KGVVA WPAK + ++L LR SMNKF STH+++
Sbjct: 596  HDLAREVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNIL 654

Query: 2078 EVCSWTRLQPGFLNRQIVTLLSALEVSDEVFWTMQVSMVSKLDQMLVNNEVAFDVLTASC 1899
            E+C+WTR QPGFLNRQI+TLLSAL V DEVFW MQ +M+ KL+QMLV+ ++AFDVLT SC
Sbjct: 655  EICAWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSC 714

Query: 1898 AEQGNTAAIMLSAGFQPQTEPHLRRMLSCIRAAQLGDLREKARIFVESGRWLMGCLDEIG 1719
            AE GN AAIMLS GF P TEPHLR ML+  RAAQL  LREK+RIFV SGRWLMG LDE G
Sbjct: 715  AEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESG 774

Query: 1718 VLEHGQCFIQVSNPSLENCFCKHGSRFSEVKNNFQIIKGLVVVAKNPCLHPGDVRILEAV 1539
            VLE GQCF+QVS PSLENCF KHGSRFSE K N  ++KG V++AKNPCLHPGDVR+LEAV
Sbjct: 775  VLEQGQCFVQVSTPSLENCFSKHGSRFSETK-NLHVVKGFVIIAKNPCLHPGDVRVLEAV 833

Query: 1538 DCPELHHLSDCLVFPQKGERPHPDEASGSDLDGDLYFVTWEEKLIPPSKRSWPPMEYTPA 1359
            D P+LHHL+DCLVFPQKG+RPH +EASGSDLDGDLYFVTW+E LIPPSKRSW PMEY P 
Sbjct: 834  DAPDLHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQ 893

Query: 1358 EVKELPRPVNHMDIIDFFTKNMVNENLGTICNAHVVHADLSDYGALDEKCVKLAELAALA 1179
            E K   R V   DII+FF +NMVNE+LG ICNAHVVHAD SDYGALDEKC+ LAELAA A
Sbjct: 894  ESKLKTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATA 953

Query: 1178 VDFPKTGRIVILPNQLKPKIYPDFMGKPESQSYKSEKILGKLYQSIKDAYFKEDSFPASE 999
            VDFPKTG++V +P  LKPK+YPDFMGK   QSY+S+KILG+LY+ IKDAY  ++   A  
Sbjct: 954  VDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAY--DEDIDAPY 1011

Query: 998  LDINPRDVIYDMDLEVEGSEDFMNDAWGLKCSYVGQLCGLLAQYKVRNEEEIVTGHVWSL 819
            L+    D+ YD DLEV GS DF+ DAW  KCSY GQL GLL QYKV+ EEE+VTG +WS+
Sbjct: 1012 LNFVTGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSM 1071

Query: 818  PKSNSRKQGELKEKLKHAYSCLKREFRQHFDKLDTNFEHLRDEERNAVYEKKASAWYQVS 639
            PK NSRKQGELKE+LKH+YS LK+EFR  F+KL+++   L +EE+N  YE+KASAWYQV+
Sbjct: 1072 PKYNSRKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVT 1131

Query: 638  YRSEWVKKSLELQGPDGEGQ------ADVILSFAWIPADYLARIKV--RHGGKGNKDDML 483
            Y  EWVKKSL+LQ    E Q      + V+LSF WI  DYLAR K+  RH   GN D   
Sbjct: 1132 YHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDS-T 1190

Query: 482  KPINSLANYLAK 447
            KP++SLA YL++
Sbjct: 1191 KPVDSLAKYLSE 1202