BLASTX nr result
ID: Achyranthes22_contig00013315
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00013315
(687 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 450 e-124
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 450 e-124
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 449 e-124
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 449 e-124
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 449 e-124
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 449 e-124
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 449 e-124
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 449 e-124
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 446 e-123
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 393 e-107
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 377 e-102
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 293 4e-77
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 284 2e-74
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 271 1e-70
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 261 1e-67
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 261 1e-67
gb|AFM77886.1| replicase [Hosta virus X] 258 1e-66
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 256 6e-66
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 255 1e-65
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 254 2e-65
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 450 bits (1158), Expect = e-124
Identities = 216/227 (95%), Positives = 223/227 (98%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF 683
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF 344
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 450 bits (1158), Expect = e-124
Identities = 216/228 (94%), Positives = 221/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 449 bits (1154), Expect = e-124
Identities = 216/228 (94%), Positives = 220/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 449 bits (1154), Expect = e-124
Identities = 216/228 (94%), Positives = 220/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 449 bits (1154), Expect = e-124
Identities = 216/228 (94%), Positives = 220/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 449 bits (1154), Expect = e-124
Identities = 216/228 (94%), Positives = 220/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 449 bits (1154), Expect = e-124
Identities = 216/228 (94%), Positives = 220/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 449 bits (1154), Expect = e-124
Identities = 216/228 (94%), Positives = 220/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T
Sbjct: 178 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQIT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 446 bits (1148), Expect = e-123
Identities = 215/228 (94%), Positives = 221/228 (96%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA T
Sbjct: 178 LPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLT 237
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMM
Sbjct: 238 VTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMM 297
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 298 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 345
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 393 bits (1010), Expect = e-107
Identities = 192/228 (84%), Positives = 204/228 (89%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
AHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLV
Sbjct: 118 AHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPE RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA PT
Sbjct: 178 LPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPT 236
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MM
Sbjct: 237 VTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMM 296
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
QMFFYIKS KEA+ + +QLISTKELQHYQPSEITLLVNYFEFT
Sbjct: 297 QMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFT 344
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 377 bits (967), Expect = e-102
Identities = 177/227 (77%), Positives = 200/227 (88%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLV 182
A++EPKDVPRYP DTVI + I T +AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+V
Sbjct: 118 AYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMV 177
Query: 183 LPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT 362
LPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + T
Sbjct: 178 LPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYL-ISESTT 236
Query: 363 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 542
+TAQRLETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFLP N RTPI+KT+ M
Sbjct: 237 VTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAM 296
Query: 543 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF 683
Q+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F
Sbjct: 297 QIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDF 343
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 293 bits (749), Expect = 4e-77
Identities = 141/235 (60%), Positives = 171/235 (72%), Gaps = 12/235 (5%)
Frame = +3
Query: 9 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 188
VEPKD+ RYP+ TV+ + I T+IAFMGDTLHFL+P FV LFA SPKL+T YAT+VLP
Sbjct: 120 VEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLP 179
Query: 189 PEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP- 359
PEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG + N P
Sbjct: 180 PEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPD 239
Query: 360 ---------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 512
+TAQR+ETKGANHLF+FQRG TP+ R+ T Y+TVP +FLP+++N
Sbjct: 240 GSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNS 299
Query: 513 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYF 677
R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL NYF
Sbjct: 300 RQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYF 354
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 284 bits (726), Expect = 2e-74
Identities = 139/231 (60%), Positives = 169/231 (73%), Gaps = 6/231 (2%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVISR--LENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYAT 176
AH+EPKDV RY DT+ + I TN AFMGDTLHFL + + +F SPKLQTLYAT
Sbjct: 118 AHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKSSPKLQTLYAT 177
Query: 177 LVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQ 356
+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG A++
Sbjct: 178 MVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADE 237
Query: 357 P----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPI 524
+T+Q LETKGANHLFIFQRG +LTPE R F+T YVT+P IFLP+++N R PI
Sbjct: 238 KGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPI 297
Query: 525 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYF 677
KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLLVNYF
Sbjct: 298 KKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYF 348
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 271 bits (693), Expect = 1e-70
Identities = 133/232 (57%), Positives = 165/232 (71%), Gaps = 7/232 (3%)
Frame = +3
Query: 9 VEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLP 188
VEPKDV RY +DT+ S + I T F+GDTLHFL PSF+T LFA +PK+QT+ AT+VLP
Sbjct: 120 VEPKDVARYDEDTLHSTIPTIETKTVFIGDTLHFLPPSFLTKLFARNPKIQTVLATMVLP 179
Query: 189 PEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLTVGHLTA 347
EALY L SLYP +Y+L+Y + F Y PGGH GA Y H+ Q++WL GH+
Sbjct: 180 TEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLRFGHIID 239
Query: 348 ANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPIS 527
+ ITAQ+LETK ANHLFI++RG Y TPE R F T YVT+P IFLP ++N R PI
Sbjct: 240 G-KVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIK 298
Query: 528 KTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF 683
KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI LVNYF F
Sbjct: 299 KTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLF 350
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 261 bits (667), Expect = 1e-67
Identities = 123/212 (58%), Positives = 153/212 (72%)
Frame = +3
Query: 12 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 191
EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLPP
Sbjct: 121 EPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPP 180
Query: 192 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 371
EA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITA
Sbjct: 181 EAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITA 240
Query: 372 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 551
QR+ETK ANHLF+F RG TP R+F Y T+P IFLP +N RTP +KT + QMF
Sbjct: 241 QRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMF 300
Query: 552 FYIKSVKEAKERDIWAKFRQLISTKELQHYQP 647
Y+KS+K+ E D++AKFRQL T +LQ P
Sbjct: 301 LYLKSIKKPTETDLYAKFRQLTKTDDLQELDP 332
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus]
gi|56792005|gb|AAW30448.1| viral replicase [Hydrangea
ringspot virus]
Length = 1386
Score = 261 bits (667), Expect = 1e-67
Identities = 123/212 (58%), Positives = 153/212 (72%)
Frame = +3
Query: 12 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 191
EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLPP
Sbjct: 121 EPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPP 180
Query: 192 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 371
EA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITA
Sbjct: 181 EAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITA 240
Query: 372 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 551
QR+ETK ANHLF+F RG TP R+F Y T+P IFLP +N RTP +KT + QMF
Sbjct: 241 QRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMF 300
Query: 552 FYIKSVKEAKERDIWAKFRQLISTKELQHYQP 647
Y+KS+K+ E D++AKFRQL T +LQ P
Sbjct: 301 LYLKSIKKPTETDLYAKFRQLTKTDDLQELDP 332
>gb|AFM77886.1| replicase [Hosta virus X]
Length = 1473
Score = 258 bits (659), Expect = 1e-66
Identities = 125/225 (55%), Positives = 158/225 (70%)
Frame = +3
Query: 12 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 191
EPKDV RY + + + +PT+ AF+GDTLHFLS ++ LF +P L TLYAT+VLPP
Sbjct: 120 EPKDVIRYQSEDQTADMFRVPTSTAFIGDTLHFLSLKYLHRLFLKNPNLNTLYATMVLPP 179
Query: 192 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 371
EA+YR+ S+YP+IY + Y EDGF+YIPGGH GA+YFH YD L WL VG A + T+T
Sbjct: 180 EAMYRMASIYPEIYQIQYQEDGFLYIPGGHGGAAYFHTYDTLTWLRVGQF-QAKEFTLTF 238
Query: 372 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 551
Q+LETKGANHLFI QR + TP+ RTF +VT+P+IFLP+ N R PI K MMQ+F
Sbjct: 239 QKLETKGANHLFIIQRADLKTPKYRTFVPRRKWVTLPNIFLPKHTNARKPILKQTMMQLF 298
Query: 552 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 686
Y KSVKE RD++AK RQLI TK+L+ + P E+ L NY T
Sbjct: 299 LYEKSVKEITFRDVFAKIRQLIQTKDLEQFDPDELVRLANYVMHT 343
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 256 bits (653), Expect = 6e-66
Identities = 126/231 (54%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYAT 176
A +EPKDV RY + + S I T +AF+GDTLHFL + +F S KLQTLYAT
Sbjct: 118 ACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYAT 177
Query: 177 LVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQ 356
+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++
Sbjct: 178 MVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDK 237
Query: 357 PT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPI 524
+T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP++YN R PI
Sbjct: 238 KYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPI 297
Query: 525 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYF 677
KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 298 KKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYY 348
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 255 bits (651), Expect = 1e-65
Identities = 126/231 (54%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYAT 176
A +EPKDV RY + + S I T +AF+GDTLHFL + +F S KLQTLYAT
Sbjct: 118 ACIEPKDVTRYALEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYAT 177
Query: 177 LVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQ 356
+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++
Sbjct: 178 MVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDK 237
Query: 357 PT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPI 524
+T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP++YN R PI
Sbjct: 238 KYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPI 297
Query: 525 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYF 677
KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 298 KKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYY 348
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 254 bits (649), Expect = 2e-65
Identities = 126/231 (54%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Frame = +3
Query: 3 AHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYAT 176
A +EPKDV RY + + S I T +AF+GDTLHFL + +F S KLQTLYAT
Sbjct: 118 AWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYAT 177
Query: 177 LVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQ 356
+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL VG ++
Sbjct: 178 MVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDK 237
Query: 357 PT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPI 524
+T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP++YN R PI
Sbjct: 238 RYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPI 297
Query: 525 SKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYF 677
KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 298 KKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYY 348