BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00013076
         (3381 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1440   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1426   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1415   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1410   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1404   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1402   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1397   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1397   0.0  
gb|EOY29338.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...  1394   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1382   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1381   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1375   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1372   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1372   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1368   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1361   0.0  
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...  1360   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1357   0.0  
gb|ESW08936.1| hypothetical protein PHAVU_009G087100g [Phaseolus...  1354   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1348   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1440 bits (3728), Expect = 0.0
 Identities = 707/999 (70%), Positives = 823/999 (82%), Gaps = 12/999 (1%)
 Frame = +3

Query: 420  LMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKGDEGW 599
            L  FCKK + SFF +YGLI HQI S+N+F+  GIQ+VFD+ GEI V PGYDPSK+G+  W
Sbjct: 46   LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDW 105

Query: 600  RYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHLQIYT 779
            RYASVRFGKV LERP  W GE      GK+ +  LPRHARLQNMTYS+R+K + H Q+YT
Sbjct: 106  RYASVRFGKVTLERPRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYT 161

Query: 780  QEKVKSDKFKTGK-SEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFDQGG 956
            Q+ V+SDK+KTGK ++YV+K+++ +   D+++GRIPVMVKS +CWM+ VE+GDCE+D GG
Sbjct: 162  QKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGG 221

Query: 957  YFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQGGE 1136
            YF++KGAEKTFIAQEQ CLKRLWVS++P W VAYR  +KR+RV+VKL E PK E+ +GGE
Sbjct: 222  YFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGE 280

Query: 1137 KVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKCDGF 1316
            KV++VYFS  E+PIWILFFALG  SDKEVVDLID + DD  ISNIL ASIH+AD + +  
Sbjct: 281  KVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 340

Query: 1317 -----RKGKAMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQ 1481
                 R+G A+ F+DK++K  KFPP E   E I  YLFP  SG  QKARFLGYMVKCLLQ
Sbjct: 341  GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQ 400

Query: 1482 SYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEH 1661
            +Y+GRRKCDNRDDFRNK              VH+RHAE+RMVKAMQR+LYGDRDL  IE+
Sbjct: 401  AYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIEN 460

Query: 1662 YLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTG 1841
            YLDASI+TNG++R+FSTG W+HPFK+ +R+SGVVA LRRTNPLQ T DMRKTRQQV YTG
Sbjct: 461  YLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTG 520

Query: 1842 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGM 2021
            KVGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+ +L+     L+  L +CGM
Sbjct: 521  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDP----LVDKLFDCGM 576

Query: 2022 EKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAE 2201
            EKLV DT T+L GK+KV +DG+WVGVC + +SFV EL        LP QVEIKRD Q  E
Sbjct: 577  EKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGE 636

Query: 2202 VRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIK 2381
            VRIF D GRILRPLLVVENLKK+K  KGD F+F++LLDK            DC TAWGIK
Sbjct: 637  VRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIK 696

Query: 2382 FLFEDKGKD---IKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSS 2552
            +L   KG D   +KYTHCELDMSFLLG+SCGIIP+ANHDHARRVLYQSEKHS QAIG+S+
Sbjct: 697  YLL--KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 754

Query: 2553 TNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNV 2723
            TNPNIR+DTLSHQ+YYPQRPLFR++ISDCLG+P    G   I+P+ E+FNGQ  IVAVNV
Sbjct: 755  TNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNV 814

Query: 2724 HLGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIG 2903
            HLGYNQEDSLVMNRASLERGMFR+EHIRSYK+EVDNNES +K+RK +DSV FGK+QSKIG
Sbjct: 815  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIG 874

Query: 2904 RVDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNF 3083
            RVD+LDDDGFPFIGANL +GDI+IGRCAESG DHS+KLKHTERGMVQKVV+SANDDGKNF
Sbjct: 875  RVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNF 934

Query: 3084 AVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTP 3263
            AVVSLRQVR+PCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTP
Sbjct: 935  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 994

Query: 3264 GQLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            GQLLEAALGKGIACGG L++ATPFSTLSV+AI +QLHRA
Sbjct: 995  GQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRA 1033


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1426 bits (3691), Expect = 0.0
 Identities = 702/996 (70%), Positives = 816/996 (81%), Gaps = 9/996 (0%)
 Frame = +3

Query: 420  LMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKGDEGW 599
            L  FCKK + SFF +YGLI HQI S+N+F+  GIQ+VFD+ GEI V PGYDPSK+G+  W
Sbjct: 82   LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDW 141

Query: 600  RYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHLQIYT 779
            RYASVRFGKV LERP  W GE      GK+ +  LPRHARLQNMTYS+R+K + H Q+YT
Sbjct: 142  RYASVRFGKVTLERPRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYT 197

Query: 780  QEKVKSDKFKTGK-SEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFDQGG 956
            Q+ V+SDK+KTGK ++YV+K+++ +   D+++GRIPVMVKS +CWM+ VE+GDCE+D GG
Sbjct: 198  QKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGG 257

Query: 957  YFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQGGE 1136
            YF++KGAEKTFIAQEQ CLKRLWVS++P W VAYR  +KR+RV+VKL E PK E+ +GGE
Sbjct: 258  YFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGE 316

Query: 1137 KVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKCDGF 1316
            KV++VYFS  E+PIWILFFALG  SDKEVVDLID + DD  ISNIL ASIH+AD + +  
Sbjct: 317  KVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKK 376

Query: 1317 -----RKGKAMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQ 1481
                 R+G A+ F+DK++K  KFPP E   E I  YLFP  SG  QKARFLGYMVKCLLQ
Sbjct: 377  GMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQ 436

Query: 1482 SYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEH 1661
            +Y+GRRKCDNRDDFRNK              VH+RHAE+RMVKAMQR+LYGDRDL  IE+
Sbjct: 437  AYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIEN 496

Query: 1662 YLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTG 1841
            YLDASI+TNG++R+FSTG W+HPFK+ +R+SGVVA LRRTNPLQ T DMRKTRQQV YTG
Sbjct: 497  YLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTG 556

Query: 1842 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGM 2021
            KVGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+ +L+     L+  L +CGM
Sbjct: 557  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDP----LVDKLFDCGM 612

Query: 2022 EKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAE 2201
            EKLV DT T+L GK+KV +DG+WVGVC + +SFV EL        LP QVEIKRD Q  E
Sbjct: 613  EKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGE 672

Query: 2202 VRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIK 2381
            VRIF D GRILRPLLVVENLKK+K  KGD F+F++LLDK            DC TAWGIK
Sbjct: 673  VRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIK 732

Query: 2382 FLFEDKGKD---IKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSS 2552
            +L   KG D   +KYTHCELDMSFLLG+SCGIIP+ANHDHARRVLYQSEKHS QAIG+S+
Sbjct: 733  YLL--KGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 790

Query: 2553 TNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEPLGRNQILPKAEFFNGQNGIVAVNVHLG 2732
            TNPNIR+DTLSHQ+YYPQRPLFR++ISD           LP+ E+FNGQ  IVAVNVHLG
Sbjct: 791  TNPNIRVDTLSHQLYYPQRPLFRTMISD-----------LPRPEYFNGQIAIVAVNVHLG 839

Query: 2733 YNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVD 2912
            YNQEDSLVMNRASLERGMFR+EHIRSYK+EVDNNES +K+RK +DSV FGK+QSKIGRVD
Sbjct: 840  YNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVD 899

Query: 2913 NLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVV 3092
            +LDDDGFPFIGANL +GDI+IGRCAESG DHS+KLKHTERGMVQKVV+SANDDGKNFAVV
Sbjct: 900  SLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVV 959

Query: 3093 SLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL 3272
            SLRQVR+PCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQL
Sbjct: 960  SLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1019

Query: 3273 LEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LEAALGKGIACGG L++ATPFSTLSV+AI +QLHRA
Sbjct: 1020 LEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRA 1055


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1415 bits (3662), Expect = 0.0
 Identities = 696/994 (70%), Positives = 809/994 (81%), Gaps = 6/994 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  L NFCKKAS+ FF++YGLI+HQI SYN+F+ YGIQ+VFD++GEI V PGYDPSK+G
Sbjct: 62   GETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRG 121

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            D  W++ASV+FGKV LERP FW GEKF ADGGK+++ LLPRHARLQNMTYSAR+ VETH+
Sbjct: 122  DGDWKHASVKFGKVTLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVETHV 181

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YT++ V+SDKFKTG  ++VDK    +   DV++GRIPVMV S +CWM+ V+K DCEFD
Sbjct: 182  QVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFD 241

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFIVKGAEKTFIAQEQ CLKRLWVSN+P W V YR   KR+RV++KL E  K EHI+
Sbjct: 242  HGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIK 301

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            GGEK +SVY  + E+PIW+LFFALGV SD+EVV+LID D +D  I NIL ASIH+AD+ C
Sbjct: 302  GGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNC 360

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            + FRKGK A+ ++D++IK  KFPP E   E I+ YLFP LSG  QKARFLGYMVKCLL S
Sbjct: 361  EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS 420

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            + GRRK DNRDDFRNK               H++HAE+RMVKAMQRDLYGDR +  IEHY
Sbjct: 421  FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHY 480

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASI+TNG++R+FSTG W HP+K+ +RVSGVVA LRRTNPLQ T DMRK+RQQV+YTGK
Sbjct: 481  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGK 540

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A+ G+VS+ IL+      L TL  CGM+
Sbjct: 541  VGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP----FLETLFRCGMQ 596

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KLV D  T L GK KVL+DGEWVGVC +S  FV +L        +P QVE+KRD    EV
Sbjct: 597  KLVDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 656

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D+GRILRPLLVV NLKKIK LKG  + F++LLD             DCRTAWG+++
Sbjct: 657  RIFSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEY 716

Query: 2385 LF--EDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +   + +    KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQSEKHS QAIG+S+ N
Sbjct: 717  ILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVN 776

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEPLG---RNQILPKAEFFNGQNGIVAVNVHL 2729
            PN R+DT +HQ+YYPQRPLFR++++D LG+P     +  +LP+ E+FNGQ  IVAVNVHL
Sbjct: 777  PNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHL 836

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNRASLERGMFR+EH+RSYKAEVDN E+  K+ K +DSV FGK QSKIGRV
Sbjct: 837  GYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRV 896

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFPFIGANL SGDIIIG+ AESGADHSVKLKHTERGMVQKV+LSAND+GKNFAV
Sbjct: 897  DSLDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAV 956

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 957  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1016

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQL 3371
            LLEAALGKGIA GG  KYATPFSTLSV+AI EQL
Sbjct: 1017 LLEAALGKGIALGGGQKYATPFSTLSVDAIMEQL 1050


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1410 bits (3650), Expect = 0.0
 Identities = 694/994 (69%), Positives = 807/994 (81%), Gaps = 6/994 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE+ L NFCKKAS+ FF++YGLI+HQI SYN+F+ YGIQ+VFD++GEI V PGYDPSK+G
Sbjct: 62   GESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRG 121

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            D  W++ASV+FGKV LERP FW GEKF  DGGK+++ LLPRHARLQNMTYSAR+ VETH+
Sbjct: 122  DGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETHV 181

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YT++ V+SDKFKTG   +VDK    +   DV++GRIPVMV S +CWM+ V+K DCEFD
Sbjct: 182  QVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFD 241

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFIVKGAEKTFIAQEQ CLKRLWVSN+P W V YR   KR+RV++KL E  K EHI+
Sbjct: 242  HGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIK 301

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            GGEK +SVY  + E+PIW+LFFALGV SD+EVV+LID D +D  I NIL ASIH+AD+ C
Sbjct: 302  GGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNC 360

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            + FRKGK A+ ++D++IK  KFPP E   E I+ YLFP LSG  QKARFLGYMVKCLL S
Sbjct: 361  EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS 420

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            + GRRK DNRDDFRNK               H++HAE+RMVKAMQRDLYGDR +  IEHY
Sbjct: 421  FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHY 480

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASI+TNG++R+FSTG W HP+K+ +RVSGVVA LRRTNPLQ T DMRK+RQQV+YTGK
Sbjct: 481  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGK 540

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A+ G+VS+ IL+      L TL  CGM+
Sbjct: 541  VGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP----FLETLFRCGMQ 596

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KLV D  T L GK KVL+DGEWVGVC +S  FV +L        +P QVE+KRD    EV
Sbjct: 597  KLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 656

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVV NLKKIK LKG  + F++LLD             DCRTAWG+++
Sbjct: 657  RIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEY 716

Query: 2385 LF--EDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +   + +    KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQSEKHS QAIG+S+ N
Sbjct: 717  ILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVN 776

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEPLG---RNQILPKAEFFNGQNGIVAVNVHL 2729
            PN R+DT +HQ+YYPQRPLFR++++D LG+P     +  +LP+ E+FNGQ  IVAVNVHL
Sbjct: 777  PNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHL 836

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNRASLERGMFR+EH+RSYKAEVDN E+  K+ K +DSV FGK QSKIGRV
Sbjct: 837  GYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRV 896

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFPFIGANL SGDIIIG+ +ESGADHSVKLKHTERGMVQKV+LSAND+GKNFAV
Sbjct: 897  DSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAV 956

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 957  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1016

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQL 3371
            LLEAALGKGIA GG  KYATPFSTLSV+AI EQL
Sbjct: 1017 LLEAALGKGIALGGGQKYATPFSTLSVDAIMEQL 1050


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1404 bits (3633), Expect = 0.0
 Identities = 691/994 (69%), Positives = 804/994 (80%), Gaps = 6/994 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE+ L NFCKKAS+ FF++YG I+HQI SYN+F+ YGIQ+VFD++GEI V PGYDPSK+G
Sbjct: 56   GESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRG 115

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            D  W++ASV+FGKV LERP FW GEKF   GGK+++ LLPRHARLQNMTYSAR+ VETH+
Sbjct: 116  DGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETHV 175

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YT++ V+SDKFKTG   +VDK    +   DV++GRIPVMV S +CWM+ V+K DCEFD
Sbjct: 176  QVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFD 235

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFI KGAEKTFIAQEQ CLKRLWVSN+P W V YR   KR+RV++KL E  K EHI+
Sbjct: 236  HGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIK 295

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            GGEK +SVY  + E+PIW+LFFALGV SD+EVV+LID D +D  I NIL ASIH+AD+ C
Sbjct: 296  GGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNC 354

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            + FRKGK A+ ++D++IK  KFPP E   E I+ YLFP LSG  QKARFLGYMVKCLL S
Sbjct: 355  EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS 414

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            + GRRK DNRDDFRNK               H++HAE+RMVKAMQRDLYGDR +  IEHY
Sbjct: 415  FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHY 474

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASI+TNG++R+FSTG W HP+K+ +RVSGVVA LRRTNPLQ T DMRK+RQQV+YTGK
Sbjct: 475  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGK 534

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A+ G+VS+ IL+      L TL  CGM+
Sbjct: 535  VGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP----FLETLFRCGMQ 590

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KLV D  T L GK KVL+DGEWVGVC +S  FV +L        +P QVE+KRD    EV
Sbjct: 591  KLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 650

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVV NLKKIK LKG  + F++LLD             DCRTAWG+++
Sbjct: 651  RIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEY 710

Query: 2385 LF--EDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +   + +    KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQSEKHS QAIG+S+ N
Sbjct: 711  ILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVN 770

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEPLG---RNQILPKAEFFNGQNGIVAVNVHL 2729
            PN R+DT +HQ+YYPQRPLFR++++D LG+P     +  +LP+ E+FNGQ  IVAVNVHL
Sbjct: 771  PNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHL 830

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNRASLERGMFR+EH+RSYKAEVDN E+  K+ K +DSV FGK QSKIGRV
Sbjct: 831  GYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRV 890

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFPFIGANL SGDIIIG+ +ESGADHSVKLKHTERGMVQKV+LSAND+GKNFAV
Sbjct: 891  DSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAV 950

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 951  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1010

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQL 3371
            LLEAALGKGIA GG  KYATPFSTLSV+AI EQL
Sbjct: 1011 LLEAALGKGIALGGGQKYATPFSTLSVDAIMEQL 1044


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1402 bits (3629), Expect = 0.0
 Identities = 692/1001 (69%), Positives = 802/1001 (80%), Gaps = 10/1001 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  L  FC+KA+ SFF +YGL++HQI SYN F+  G+QK FD+ GE  V PGYDPSKKG
Sbjct: 43   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG 102

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  WRYAS+RFG+V L++P F+ G       G D   + PRHARLQNMTYS+R+KV+   
Sbjct: 103  EGEWRYASMRFGQVTLDKPSFFAGN------GGDEHDMFPRHARLQNMTYSSRMKVKVQF 156

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YTQ++V SDKFKTG+ +Y+ K +LSD  TD+I+GRIPVMVKS +CWM  VEKGDC+FD
Sbjct: 157  QVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDCDFD 216

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFI+KGAEK F+AQEQ CLKRLWVSN   W VAY+SE KR R+ V+LV+  K E I+
Sbjct: 217  HGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 276

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            GGEKV+SVYF   E+PIWILFFALGV SDKE+V+LID   +D  I NILFASIHDAD KC
Sbjct: 277  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 336

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            D FRKG+ A+ ++DK+IK + FPP E T E ++TYLFP L G  QKARFLGYMVKCLLQ+
Sbjct: 337  DEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQA 396

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            YSGRRKCDNRDDFRNK              VH+ HA KRM KA+QRDLYGDR +  IE+Y
Sbjct: 397  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 456

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASI+TNG++R+FSTGAW+HPFK+++R+SG+VANL R NPLQ+  D+R+TRQQV YTGK
Sbjct: 457  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 516

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGKICFLSTPDGENCGLVKN+  TG+VS++ILE     +   L N GME
Sbjct: 517  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP----IFEQLFNSGME 572

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KL  D    L GK KV VDG+W+GVC +SLSFV EL        LP+QVEIKRD   +EV
Sbjct: 573  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 632

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVVEN+ KIK L+G  ++F+ LLD             DC TAWGIK+
Sbjct: 633  RIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKY 692

Query: 2385 LFED--KGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            L +D    K IK+THCELDMSFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ +TN
Sbjct: 693  LLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 752

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEP-LGRNQILPKAEFFNGQNGIVAVNVHLGY 2735
            P+IR+DTLSHQ++YPQRPLFR++ISDCLG+P  G N ILP+ E +NGQN IVAVNVHLGY
Sbjct: 753  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 812

Query: 2736 NQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDN 2915
            NQEDSLVMNRASLERGMFR+EHIRSYKAEVDN E   KRR  DD V FGKIQSKIGRVD+
Sbjct: 813  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS 872

Query: 2916 LDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVS 3095
            LDDDGFPFIGANL  GDI+IG+ A+SGADHS+KLKHTERGMVQKVVLS+NDDGKNF+VVS
Sbjct: 873  LDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 932

Query: 3096 LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLL 3275
            LRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQLL
Sbjct: 933  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 992

Query: 3276 EAALGKGIA------CGGTLKYATPFSTLSVEAITEQLHRA 3380
            EAALGKGIA      C G  +YATPF+T SV+AITEQLHRA
Sbjct: 993  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1033


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1397 bits (3617), Expect = 0.0
 Identities = 674/997 (67%), Positives = 808/997 (81%), Gaps = 6/997 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  L  FCK+A+ SFFK+YGLI+HQ+ SYN F+ YG+Q  FD+ GE  ++ GYDPSKKG
Sbjct: 33   GEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSKKG 92

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  WR+A VRFGKV +ERP FW        GG + + +LPRHARLQNMTYS+R+KV   L
Sbjct: 93   EGDWRHARVRFGKVTVERPTFWA-----VSGGNE-LNMLPRHARLQNMTYSSRMKVNVDL 146

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YT + VKSDKFKTG+ E+V++ ++     D+I+GRIPVMV+S +CWM+EVEK DC+FD
Sbjct: 147  QVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCDFD 206

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYF++KG EK FIAQEQ  +KRLW+SN   W +AYRSE KR R+ ++LVEN K E+I+
Sbjct: 207  HGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVEYIK 266

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            GGEKV++VYF   E+P+W+LFFALGV SDKEVV+LID +++D  I+NILFASI +AD KC
Sbjct: 267  GGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKC 326

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
              F +G+ A+D++ K++K+++FPP E   E + TYLFP L    QKARFLGYMVKCLLQ+
Sbjct: 327  YKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQA 386

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            Y+GR KCDNRDDFRNK              VH+ HA +RM K +QRDLY DR +  IEHY
Sbjct: 387  YTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHY 446

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASIVTNG++R+FSTGAW+HP+K+ +R+SGVVANL R NPLQ+  D+RKTRQQV YTGK
Sbjct: 447  LDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGK 506

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+NI+E     ++  L + GME
Sbjct: 507  VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMES----IVDKLFDSGME 562

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            +LV DT + L GKDKV ++GEWVGVC +SLSF  E+         P QVEIKRD    EV
Sbjct: 563  ELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEV 622

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVV+NL +IK  KG+ ++F+ LL+             DCRTAW IK+
Sbjct: 623  RIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKY 682

Query: 2385 LFED-KGKD-IKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            L  D +GK  +KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG+S+TN
Sbjct: 683  LLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTN 742

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGE---PLGRNQILPKAEFFNGQNGIVAVNVHL 2729
            PNIR+DTLSHQ+YYPQRPLFR++ SDCLG+   PLG+  +LPK E +NGQN IVAVNVHL
Sbjct: 743  PNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHL 802

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNR+SLERGMFR+EH+RSYKAEVDN E  +KRRK +D V FGKIQSKIGRV
Sbjct: 803  GYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKIGRV 862

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFP++GANL  GDI+IGRCAESGADHS+KLKHTERGMVQKVVLS+NDDGKN+AV
Sbjct: 863  DSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAV 922

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 923  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQ 982

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LLEAALGKGIACGG++KYATPFST+SV+AITEQLHRA
Sbjct: 983  LLEAALGKGIACGGSMKYATPFSTISVDAITEQLHRA 1019


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1397 bits (3616), Expect = 0.0
 Identities = 688/998 (68%), Positives = 814/998 (81%), Gaps = 7/998 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  L  FCK+A+ +FF +YGLI+HQI SYN+F+  GIQ+VFD+ GEI V PGYDPSKKG
Sbjct: 47   GEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSKKG 106

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  WRYASV+FGKV L  P FW G    +D  K++ K+LPRHARLQNM+Y++++KV   +
Sbjct: 107  ESEWRYASVKFGKVTLGMPSFWGG----SDDEKEY-KMLPRHARLQNMSYASKMKVNITV 161

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            ++YTQ+ V SDKFKTGKS+Y+DK+ILS  T D+I+G +PVMVKS +CWM + EKGDC+FD
Sbjct: 162  EVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDCDFD 221

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFI+KGAEKTFIAQEQSCLKRL ++N+    VAYRSE KR R+ ++LV   K E+I+
Sbjct: 222  HGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIE 281

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            G EKV++VYF   E+P+WI FFALGV SD+EV++LID D++D  ISNILFASI DAD+  
Sbjct: 282  GVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDADKLN 341

Query: 1308 D----GFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKC 1472
            D    GFR+GK A+ ++D++I+++ FPP E   E I  YLFP L G  QKARFLGYMVK 
Sbjct: 342  DKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYMVKS 401

Query: 1473 LLQSYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHG 1652
            LLQ+Y+GRRKCDNRDDFRNK               H+ HA +RM KA+QRDLYGDR +  
Sbjct: 402  LLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRAVRP 461

Query: 1653 IEHYLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVS 1832
            IEHYLDASIVTNG++R+FSTGAW HPFK+ +R+SGVVA + R NPLQ+  DMRKTRQQV 
Sbjct: 462  IEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQVQ 521

Query: 1833 YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVN 2012
            YTGKVGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+N+LE     L+  L+ 
Sbjct: 522  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLES----LIPQLLT 577

Query: 2013 CGMEKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQ 2192
            CGMEKLV DT T LRGKDKV ++G+WVGVC +SLSFV EL        LP QVEIKRDV 
Sbjct: 578  CGMEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVH 637

Query: 2193 NAEVRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAW 2372
              EVRIF D GRILRPLLVVENL K+K  KG   SF+  LD             DC TAW
Sbjct: 638  QGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAW 697

Query: 2373 GIKFLF-EDKGKDI-KYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGY 2546
            GIK+LF EDKGK   K+THCELDMSFLLG+SCGIIP+ANHDHARRVLYQ++KHS QAIG+
Sbjct: 698  GIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGF 757

Query: 2547 SSTNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEPLGRNQILPKAEFFNGQNGIVAVNVH 2726
            S+TNPN+R+DTLSHQ++YPQRPLF+++ SDCLG+P   N+I+PK E++NGQN IVAVNVH
Sbjct: 758  STTNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKPGRHNRIVPKPEYYNGQNAIVAVNVH 817

Query: 2727 LGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGR 2906
            LG+NQEDS+VMNRASLERGMFR+EHIRSYKAEVDN ES +KRRK DD V FGK+QSK GR
Sbjct: 818  LGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCVNFGKMQSKFGR 877

Query: 2907 VDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFA 3086
            VD+LDDDGFP++GANL SGDIIIGRC+ESGADHS+KLKHTERGMVQKV+LS+NDDGKNFA
Sbjct: 878  VDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNFA 937

Query: 3087 VVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPG 3266
            VVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QG+VPDIVINPHAFPSRQTPG
Sbjct: 938  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPG 997

Query: 3267 QLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            QLLEAALGKGIACGG+ +YATPFSTLSV+ IT+QLH A
Sbjct: 998  QLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSA 1035


>gb|EOY29338.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1073

 Score = 1394 bits (3608), Expect = 0.0
 Identities = 672/995 (67%), Positives = 806/995 (81%), Gaps = 6/995 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  L  FCK+A+ SFFK+YGLI+HQ+ SYN F+ YG+Q  FD+ GE  ++ GYDPSKKG
Sbjct: 33   GEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSKKG 92

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  WR+A VRFGKV +ERP FW        GG + + +LPRHARLQNMTYS+R+KV   L
Sbjct: 93   EGDWRHARVRFGKVTVERPTFWA-----VSGGNE-LNMLPRHARLQNMTYSSRMKVNVDL 146

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YT + VKSDKFKTG+ E+V++ ++     D+I+GRIPVMV+S +CWM+EVEK DC+FD
Sbjct: 147  QVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCDFD 206

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYF++KG EK FIAQEQ  +KRLW+SN   W +AYRSE KR R+ ++LVEN K E+I+
Sbjct: 207  HGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVEYIK 266

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            GGEKV++VYF   E+P+W+LFFALGV SDKEVV+LID +++D  I+NILFASI +AD KC
Sbjct: 267  GGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKC 326

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
              F +G+ A+D++ K++K+++FPP E   E + TYLFP L    QKARFLGYMVKCLLQ+
Sbjct: 327  YKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQA 386

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            Y+GR KCDNRDDFRNK              VH+ HA +RM K +QRDLY DR +  IEHY
Sbjct: 387  YTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHY 446

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASIVTNG++R+FSTGAW+HP+K+ +R+SGVVANL R NPLQ+  D+RKTRQQV YTGK
Sbjct: 447  LDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGK 506

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+NI+E     ++  L + GME
Sbjct: 507  VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMES----IVDKLFDSGME 562

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            +LV DT + L GKDKV ++GEWVGVC +SLSF  E+         P QVEIKRD    EV
Sbjct: 563  ELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEV 622

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVV+NL +IK  KG+ ++F+ LL+             DCRTAW IK+
Sbjct: 623  RIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKY 682

Query: 2385 LFED-KGKD-IKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            L  D +GK  +KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG+S+TN
Sbjct: 683  LLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTN 742

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGE---PLGRNQILPKAEFFNGQNGIVAVNVHL 2729
            PNIR+DTLSHQ+YYPQRPLFR++ SDCLG+   PLG+  +LPK E +NGQN IVAVNVHL
Sbjct: 743  PNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHL 802

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNR+SLERGMFR+EH+RSYKAEVDN E  +KRRK +D V FGKIQSKIGRV
Sbjct: 803  GYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKIGRV 862

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFP++GANL  GDI+IGRCAESGADHS+KLKHTERGMVQKVVLS+NDDGKN+AV
Sbjct: 863  DSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAV 922

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 923  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQ 982

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQLH 3374
            LLEAALGKGIACGG++KYATPFST+SV+AITEQLH
Sbjct: 983  LLEAALGKGIACGGSMKYATPFSTISVDAITEQLH 1017


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1382 bits (3578), Expect = 0.0
 Identities = 683/999 (68%), Positives = 801/999 (80%), Gaps = 10/999 (1%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            G   L NFCKKAS+ FF++YG+I+HQI SYN+F+ YGIQ+VFD++GEI V PGYDPSKKG
Sbjct: 60   GGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKG 119

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  W++ASV+FGKV L+RP FW GEKF A  G++++ L PRHARLQNMTYSAR+ VETH+
Sbjct: 120  EGEWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLDLWPRHARLQNMTYSARIIVETHV 179

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q++T++ V+SDKFKTG  ++VDK  + +   DV +GRIPVMV S +CWMS  ++ DC+FD
Sbjct: 180  QVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFD 239

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFIVKGAEK FIAQEQ CLKRLWVSN   W VAYRS  KR RV++KL E  K EHI+
Sbjct: 240  HGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIK 299

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            G  K +SVYF + E+PIW+LFFALGV SD+E+VDLID D  D  I NIL ASIHDAD+ C
Sbjct: 300  GEAKALSVYF-LAEMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNC 358

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            + FRKGK A+ ++D++IK  KFPP E   E I  YLFP LSG  QKARFLGYMVKCLL S
Sbjct: 359  EDFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLS 418

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            Y GRRK DNRDDFRNK               H++HAE+RMVKA+QRDL GDR +  +EHY
Sbjct: 419  YIGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHY 478

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASI+TNG++R+FSTG W HP+K+ +RVSGVVA LRRTNPLQ T D+RKTRQQV+YTGK
Sbjct: 479  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGK 538

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A+ G+VS+ +L+     LL TL  CGM+
Sbjct: 539  VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP----LLETLFRCGMQ 594

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KLV D+ T L GK KVL+DG+WVGVC +S  FV +L        +P QVE+KRD Q  EV
Sbjct: 595  KLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEV 654

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLK----GDTFSFETLLDKXXXXXXXXXXXXDCRTAW 2372
            RIF D GRI+RPLLVV NLK IK LK    G  + F+TLLDK            DCRTAW
Sbjct: 655  RIFSDAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAW 714

Query: 2373 GIKFLF--EDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGY 2546
            G+++L   + +   + YTHCELDMSFLLG+SCG+IPFANHDHARRVLYQSEKHS QAIG+
Sbjct: 715  GVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGF 774

Query: 2547 SSTNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEP-LGRNQ--ILPKAEFFNGQNGIVAV 2717
            S+ NPN R+DT +HQ+YYPQRPLF +++SD LG+P  GR+Q  +L + E++NGQ  IVAV
Sbjct: 775  STVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAV 834

Query: 2718 NVHLGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSK 2897
            NVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVDN E+  K+ K +DSV FGK QSK
Sbjct: 835  NVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSK 894

Query: 2898 IGRVDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGK 3077
            IGRVD+LDDDGFPFIGANL SGDIIIG+ AESGADHSVK+KHTERGMVQKV+LSANDDGK
Sbjct: 895  IGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGK 954

Query: 3078 NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQ 3257
            NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 955  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQ 1014

Query: 3258 TPGQLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLH 3374
            TPGQLLEAALGKGIA GG  KYATPFS LSV+AI +QLH
Sbjct: 1015 TPGQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLH 1053


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1381 bits (3575), Expect = 0.0
 Identities = 681/994 (68%), Positives = 798/994 (80%), Gaps = 3/994 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            G+ +L +FCKKA+S FF +YGLI+HQI SYN F+  G+Q+VFD+ GE+ V PGYD SK+ 
Sbjct: 40   GKETLQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQK 99

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            D  WR ASVRFGKV L+RP FW G    A+       + PRHARLQNMTYSAR+K+  ++
Sbjct: 100  DGEWRRASVRFGKVTLDRPSFWGGTSSDAEHN-----MFPRHARLQNMTYSARMKIHVNV 154

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YTQ   +SDKFKTG  + V K ++     ++I+GRIPVMVKS +CW++ VEKGDC+FD
Sbjct: 155  QVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFD 214

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYF++KGAEK FIAQEQ C+KRLW+SN   W V+Y+SE KR R+ V+LVE  K E+I+
Sbjct: 215  HGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIK 274

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            G +K + VYF   E+P+WILFFALGV+SDKEV+DLID  ++D  I NI FASIHDADEKC
Sbjct: 275  GEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKC 334

Query: 1308 DGFRK-GKAMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            + FR+  +A+D++DK++K+++FPP E   + I  YLFP L+    KARFLGYMVKCLL++
Sbjct: 335  EHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEA 394

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            Y+G RKCDNRD FRNK              VH+ HA +RM KA+QRDLYGDRD+H IEHY
Sbjct: 395  YTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHY 454

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASIVTNG+TR+FSTGAW HPFK  +RVSGVV NL R NPLQ+  D+RKTRQQV YTGK
Sbjct: 455  LDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGK 514

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYPHPSHWG++CFLSTPDGENCGLVKN+A TGVVS+NI E     L+  L + GME
Sbjct: 515  VGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISES----LVDKLFDSGME 570

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KLV DT T+L GK KV ++GEWVGVC +S  FV EL        LP QVEIKRD Q  EV
Sbjct: 571  KLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREV 630

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVVENL KIK  KG  + F +LLDK            DC TAWGIKF
Sbjct: 631  RIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKF 690

Query: 2385 LFED-KGKD-IKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            L  D +GK  +KY+HCELDMSFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG+S+TN
Sbjct: 691  LLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTN 750

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEPLGRNQILPKAEFFNGQNGIVAVNVHLGYN 2738
            PNIR+DTLSHQ++YPQRPLFR++ISDCL        +LPK E FNGQN IVAVNVHLGYN
Sbjct: 751  PNIRVDTLSHQLHYPQRPLFRTMISDCL--------VLPKPELFNGQNAIVAVNVHLGYN 802

Query: 2739 QEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVDNL 2918
            QEDSLVMNRASLERGMFR+EHIRSYKAEVDN E ++KRRK +DS+TFGKIQSKIGRVD+L
Sbjct: 803  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSL 862

Query: 2919 DDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVVSL 3098
            DDDGFPFIGAN+ SGDI+IG+CAESGADHSVKLKHTERGMVQKVVLS+ND+GKNFAVVSL
Sbjct: 863  DDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSL 922

Query: 3099 RQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLE 3278
            RQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QG+VPDIVINPHAFPSRQTPGQLLE
Sbjct: 923  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLE 982

Query: 3279 AALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            AALGKGIACGG+ +YATPFSTLSV+ I +QLHRA
Sbjct: 983  AALGKGIACGGSKRYATPFSTLSVDDIIDQLHRA 1016


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1375 bits (3560), Expect = 0.0
 Identities = 672/997 (67%), Positives = 798/997 (80%), Gaps = 6/997 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GEA L +FC KA++ FF +YGLI+HQI SYN+F+  GIQK FD+ GE+ V PGYDPSKKG
Sbjct: 55   GEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKG 114

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  WRYASV+FGKV LE+P FW+G   H        K+LPRHARLQNMTYS+++KV   +
Sbjct: 115  ENEWRYASVKFGKVALEKPTFWSGADEH--------KMLPRHARLQNMTYSSKMKVNVSV 166

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            ++YT++ V+SDKFKTGK +YVDK +L+    ++ +G +PVMVKS +CWM   EKGDC+FD
Sbjct: 167  EVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFD 226

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYF++KGAEK FIAQEQ CLKRLW+SN   W V+Y+SE KR R+ V+LV     E ++
Sbjct: 227  HGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVK 286

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
              +K ++VYF   E+P+WILFFALGV SDKEV+DLI   ++D RI NI FASIHDADEK 
Sbjct: 287  AEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKT 346

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            +GFR+GK A++++ + I+ ++FPP E   +F   YLFP L    QKARFLGYMVKCLLQ+
Sbjct: 347  EGFRRGKEALEYVVRQIRGTRFPPGE-NEDFFLLYLFPTLHSLRQKARFLGYMVKCLLQA 405

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            Y+G+RKC+N D FRNK              VH+ HA +RM KA+Q+DLYGDRD+  IEHY
Sbjct: 406  YNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHY 465

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASIVTNG++R+FSTGAW+HP+K+ +R+SGVVANL R NPLQ+  D+RKTR  V YTGK
Sbjct: 466  LDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGK 525

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDAR+PHPSHWG++CFLSTPDGENCGLVKN+A TG+VS NILE     L+  L+  GME
Sbjct: 526  VGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEP----LIDKLIARGME 581

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            K+ +D+ + L  KDKV ++GEWVGVC +S  FV EL        LP QVEIKRD Q  EV
Sbjct: 582  KVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEV 641

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVV+NL KI+  KG   +F++LLDK            DC TAWGIKF
Sbjct: 642  RIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKF 701

Query: 2385 LFE--DKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            L    D  + +KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQ++KHS QAIG+ +TN
Sbjct: 702  LLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTN 761

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHL 2729
            PNIR+DTLSHQ+YYPQRPLFR+V SDCLG+P    G N I+PK E +NGQN IVAVNVHL
Sbjct: 762  PNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHL 821

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNRASLERGMFR+EHIRSYKA+VDN E  +KRRK+DD+V FGKI SKIGRV
Sbjct: 822  GYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRV 881

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFPFIGANL SGDI+IGRCAESG DHS+KLKHTERGMVQKVVLS+ND+GKNFAV
Sbjct: 882  DSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAV 941

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT+QGIVPDIVINPH+FPSRQTPGQ
Sbjct: 942  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQ 1001

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LLEAALGKGIACGG++KYATPFSTLSVEAIT QLHRA
Sbjct: 1002 LLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRA 1038


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1372 bits (3551), Expect = 0.0
 Identities = 670/996 (67%), Positives = 801/996 (80%), Gaps = 5/996 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            G+  +  FCKKAS  FF +YGLI+HQI SYN F   G+Q  FD+ G++TV PG+DPSKKG
Sbjct: 48   GDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDPSKKG 107

Query: 588  D-EGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETH 764
            D E +RYASV+FGKV L+RPMFW GE     G    +K+LPRHARLQ MTY++++KV   
Sbjct: 108  DNEHYRYASVKFGKVTLDRPMFWCGE-----GNTQEMKMLPRHARLQRMTYASKMKVNVQ 162

Query: 765  LQIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEF 944
            +Q+Y  +KV+SDKFKTGK EY+D+ I+ D   ++ +GR+PVMVKS +CWM+ VEKGDCEF
Sbjct: 163  VQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGDCEF 222

Query: 945  DQGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHI 1124
            D GGYF++KGAEK FIAQEQ  LKRLWV+N PYW VAY+S+ KR R+ VKLVEN   E I
Sbjct: 223  DHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTVEGI 282

Query: 1125 QGGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEK 1304
            + GEKV++VYF   E+P+W+LFFALGV SDK++VDLID    DGRI NILFASI +ADEK
Sbjct: 283  KNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREADEK 342

Query: 1305 CDGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQ 1481
            C+ FR+GK A+ +I++ +K  +FPP E   E ++ Y+FP + G  +KAR+L YMVK LL 
Sbjct: 343  CEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKVLLL 402

Query: 1482 SYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEH 1661
            +Y+GRRK DNRDDFRNK              VH+ HA KRM KA+QRDLYGDRD+H IEH
Sbjct: 403  AYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVHQIEH 462

Query: 1662 YLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTG 1841
            YLDASI+TNG+ R+FSTGAW HP+K+ +R+SGVVA L RTNPLQ+  ++R+TRQQV YTG
Sbjct: 463  YLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTG 522

Query: 1842 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGM 2021
            KVGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+N+ E     +L  L  CGM
Sbjct: 523  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTES----ILPQLFACGM 578

Query: 2022 EKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAE 2201
            E+LV DT   L  KDKV ++G+WVGVC++S SFV EL        LP QVEIKRD    E
Sbjct: 579  EELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEE 638

Query: 2202 VRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIK 2381
            VRI  D GRILRPLLVV NL KIK  K D  SF++LLD             DC+TAWG+ 
Sbjct: 639  VRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVP 698

Query: 2382 FLFEDKGKD-IKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +LF  +GK  +KYTHCELDMSFLLG+SC ++PFANHDHARRVLYQS+KHS QAIG+S+TN
Sbjct: 699  YLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTN 758

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEP--LGRNQILPKAEFFNGQNGIVAVNVHLG 2732
            P+IR+D LSHQ++YPQ+PLF+++ SDCLG+P  LG +++LPK+EF+NGQN IVAVNVHLG
Sbjct: 759  PDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSKLLPKSEFYNGQNAIVAVNVHLG 818

Query: 2733 YNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVD 2912
            YNQEDSLVMNRASL+RGMFR+EHIRSYKAE +N ES+EK+RK +D V FGKIQSKIGRVD
Sbjct: 819  YNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSKIGRVD 878

Query: 2913 NLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVV 3092
            +LDDDGFPF+GANL  GDIIIGRCA+SGADHS+KLKHTERG VQKVVLS+ND+GKNFAVV
Sbjct: 879  SLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVV 938

Query: 3093 SLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL 3272
            SLRQVRSP LGDKFSSMHGQKGVLG+LESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL
Sbjct: 939  SLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL 998

Query: 3273 LEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LEAALGKGIAC G+L+ ATPFST SVEAIT+QLHRA
Sbjct: 999  LEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRA 1034


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1372 bits (3550), Expect = 0.0
 Identities = 681/999 (68%), Positives = 799/999 (79%), Gaps = 10/999 (1%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            G   L NFCKKAS+ FF++YGLI+HQI SYN+F+ YGIQKVFD++GEI V PGYDPSKKG
Sbjct: 60   GGGFLRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKG 119

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  W++ASV+FG V L+RP FW GEK+ A  G++++ + PRHARLQNMTYSAR+ VETH+
Sbjct: 120  EGEWKHASVKFGNVILDRPKFWAGEKYSAYNGEEYLNMWPRHARLQNMTYSARIIVETHV 179

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q++T++ V+SDKFKTG  ++VDK  + +   DV +GRIPVMV S +CWMS  ++ DCEFD
Sbjct: 180  QVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFD 239

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
             GGYFIVKGAEK FIAQEQ CLKRLWVSN   W VAYRS  KR RV++KL E  K E I+
Sbjct: 240  HGGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIK 299

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            G  K +SVYF + E+PIW+LFFALGV SD+EVVDLID D  D +I NIL ASIHDAD+ C
Sbjct: 300  GEAKSLSVYF-LAEMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNC 358

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            + FRKGK A+ ++D++IK  KFPP E   E I  YLFP LSG  QKARFLGYMVKCLL S
Sbjct: 359  EDFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLS 418

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
            Y GRRK DNRDDFRNK              VH++HAE+RMVKA+QRDL GDR +H IEHY
Sbjct: 419  YIGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHY 478

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASI+TNG++R+FSTG W HP+K+ +RVSGVVA LRRTNPLQ T D+RKTRQQV+YTGK
Sbjct: 479  LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGK 538

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
            VGDARYP+PSHWGK+CFLSTPDGENCGLVKN+A+ G+VS+ +L      LL TL  CGM+
Sbjct: 539  VGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMP----LLETLFRCGMQ 594

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            KLV D  T L GK KVL+DG+WVGVC +S  FV +L        +P QVE+KRD Q  EV
Sbjct: 595  KLVDDCATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEV 654

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVL----KGDTFSFETLLDKXXXXXXXXXXXXDCRTAW 2372
            RIF D GRI+RPLLVV NLK IK L    KG  + F+TLLDK            DCRTAW
Sbjct: 655  RIFSDAGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAW 714

Query: 2373 GIKFLF--EDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGY 2546
            G+++L   + +   + YTHCELDMSFLLG+SCG+IPFANHDHARRVLYQSEKHS QAIG+
Sbjct: 715  GVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGF 774

Query: 2547 SSTNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEP-LGRNQ--ILPKAEFFNGQNGIVAV 2717
            S+ NPNIR+DT +HQ+YYPQRPLF +++SD LG+P   R+Q  +L + E++NGQ  IVAV
Sbjct: 775  STVNPNIRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAV 834

Query: 2718 NVHLGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSK 2897
            NVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVDN E++ K+ K +DSV FGK QSK
Sbjct: 835  NVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFGKTQSK 894

Query: 2898 IGRVDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGK 3077
            IGRVD LDDDG P+IGANL SGDIIIG+ AESGADHSVK+KHTE+GMVQKV+LSAND+GK
Sbjct: 895  IGRVDCLDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGK 954

Query: 3078 NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQ 3257
            NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 955  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQ 1014

Query: 3258 TPGQLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLH 3374
            TPGQLLEAALGKGIA GG  KYATPFS LSV+AI +QLH
Sbjct: 1015 TPGQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLH 1053


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1368 bits (3541), Expect = 0.0
 Identities = 659/997 (66%), Positives = 809/997 (81%), Gaps = 6/997 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  +  +CKKAS  FF +YGLI+HQI S+N+FV  G+Q  FD+ G++ V PG+DPSKKG
Sbjct: 50   GEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKKG 109

Query: 588  D-EGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETH 764
            + E +RYASV+FGKV+L++PMFW GE     G     K+LPRHAR+Q MTY++++K++  
Sbjct: 110  ENEHFRYASVKFGKVKLDKPMFWGGE-----GNAQEFKMLPRHARIQRMTYASKVKIQVK 164

Query: 765  LQIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEF 944
            +Q+Y  +KV+SDKFKTGK E++D+ I+ +   ++I+GR+PVMVKS +CWM + EK D EF
Sbjct: 165  VQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEF 224

Query: 945  DQGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHI 1124
            D GGYFIVKGAEKTFIAQEQ  LKRLWV N P W +AY+S+ KR R+ +KLV N ++E +
Sbjct: 225  DHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEV 284

Query: 1125 QGGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEK 1304
            + G+  ++VYF   EVP+W+LFFALGV SDKE+VDLI C  DD RI NILFAS+ DADEK
Sbjct: 285  ENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEK 344

Query: 1305 CDGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQ 1481
            C  FR+ + A+ +++K +K  +FPP+E   E ++ Y+FP +SG  +KARFL YMVK LL 
Sbjct: 345  CGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLL 404

Query: 1482 SYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEH 1661
            +Y+GRRKCDNRDDFRNK              VH+ HA KRM KA+QRDLYGDRD+  IEH
Sbjct: 405  AYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEH 464

Query: 1662 YLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTG 1841
            YLDASI+TNG+ R+FSTGAW+HP+K+ +R+SGVVAN+ RTNPLQ+  ++R+ RQQV YTG
Sbjct: 465  YLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTG 524

Query: 1842 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGM 2021
            KVGDARYPHPSHWGK+CFL+TPDGENCGLVKN++ TG+VS+++ +   ++LL  LV+CGM
Sbjct: 525  KVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILL-KLVDCGM 583

Query: 2022 EKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAE 2201
            ++LV DT T L   DKVL++G+WVGVC +S SFV EL        LP QVEIKRD    E
Sbjct: 584  QELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHE 643

Query: 2202 VRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIK 2381
            VRI+ D GRILRPLLVV NL KIK  K D +SF++LLDK            DC TAWG++
Sbjct: 644  VRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVE 703

Query: 2382 FLFEDKGK-DIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +LF  +GK  +KYTHCELDMSFLLG+SC ++PFANHDHARRVLYQS+KHS QAIG+S+TN
Sbjct: 704  YLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTN 763

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHL 2729
            PNIR+DTLSHQ++YPQ+PLFR++ SDCLG+P   LG+++I PKAEF+NGQN IVAVNVHL
Sbjct: 764  PNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHL 823

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNRASL+RGMFR+EHIRSYK+E+DN ESS+K+RK +D V F K+QSKIGRV
Sbjct: 824  GYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRV 883

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFP++GANL SGDIIIG+CAESGAD+SVKLKHTERG VQKVVLS+ND+GKNFAV
Sbjct: 884  DSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAV 943

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSP LGDKFSSMHGQKGVLG+LESQENFPFT+QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 944  VSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQ 1003

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LLEAALGKGIACGG LK ATPFST SV+AITEQLHRA
Sbjct: 1004 LLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRA 1040


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1361 bits (3523), Expect = 0.0
 Identities = 669/999 (66%), Positives = 793/999 (79%), Gaps = 8/999 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GEA L +FCKK+S +FF QYGLI+HQI SYN+F+  GIQK FD  G+I V PGYDPSKKG
Sbjct: 44   GEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKG 103

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            D  WRYA+V+FGKV L++P FW G    A  GK++  +LPRHARLQNMTYS+R+K+   L
Sbjct: 104  DGEWRYATVKFGKVTLDKPKFWGG----AASGKEY-NMLPRHARLQNMTYSSRMKINISL 158

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTT--DVIVGRIPVMVKSAICWMSEVEKGDCE 941
            +IYTQ+ V SDKFKTGK +YVDK  +   +   DV +GR+PVMV S +CWM + +K DCE
Sbjct: 159  EIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCE 218

Query: 942  FDQGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEH 1121
            FD+GGYF++KGAEK FIAQEQ CL+RLW+SN   W VAYRSE KR R+ ++LVEN K+E 
Sbjct: 219  FDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSED 278

Query: 1122 IQGGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIH--DA 1295
            ++  EKV++VYF   EVP+WILFFALGV SDKE+VDLID   DD  + NILFAS+   D 
Sbjct: 279  LKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDN 338

Query: 1296 DEKCDGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKC 1472
            D+K   FR+GK A+ F+D  I+++ FPPA+   + ++ YLF  L G+ QK  FLGYMVKC
Sbjct: 339  DDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKC 398

Query: 1473 LLQSYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHG 1652
            LLQ+Y+GRRKCDNRDDFRNK              VH+ HA +RM KA+QRDLYGDR +H 
Sbjct: 399  LLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHP 458

Query: 1653 IEHYLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVS 1832
            IEHYLDASI+TNG++R+FSTGAWAH FK+ +R+SGVVA L R NPLQ+  ++R+TRQQV+
Sbjct: 459  IEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVA 518

Query: 1833 YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVN 2012
            YTGKVGDARYPHPSHWG++CFLSTPDGENCGL+KN++ TG+VS N  +     +  TL  
Sbjct: 519  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKS----ITPTLFR 574

Query: 2013 CGMEKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQ 2192
            CGME LV +T T   GK ++ +DGEWVGVC +SLSFV  +           QVE+KRD Q
Sbjct: 575  CGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQ 634

Query: 2193 NAEVRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAW 2372
              EVRIF D GRILRPLLVVENL +I   KG+ ++F++LLDK            DCR AW
Sbjct: 635  LKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAW 694

Query: 2373 GIKFLFEDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSS 2552
             IK L ED+G   KY+HCELDMSFLLG+SCG++PFANHDHARR L+QS+KHS QAIG+S 
Sbjct: 695  SIKHLMEDEGTT-KYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSP 753

Query: 2553 TNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNV 2723
            TN N R+DTLSHQ++YPQRPLFR++ +DCLG P        ILPK EF+NGQN IVAVNV
Sbjct: 754  TNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNV 813

Query: 2724 HLGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIG 2903
            HLGYNQEDSLVMNRASLERGMFR+EHIRSYKAEVDN ESSEKRRK DD++ FGK QSKIG
Sbjct: 814  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIG 873

Query: 2904 RVDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNF 3083
            RVD+LDDDGFP+IGANL SGDI+IGRCAESGADHS+KLKHTE+GMVQKVVLS+NDDGKN+
Sbjct: 874  RVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNY 933

Query: 3084 AVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTP 3263
            AVVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTP
Sbjct: 934  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 993

Query: 3264 GQLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            GQLLEAALGKGIA GG+LKYATPFST SV+AIT+QLHRA
Sbjct: 994  GQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRA 1032


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score = 1360 bits (3520), Expect = 0.0
 Identities = 668/998 (66%), Positives = 792/998 (79%), Gaps = 8/998 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GEA L +FCKK+S +FF QYGLI+HQI SYN+F+  GIQK FD  G+I V PGYDPSKKG
Sbjct: 44   GEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKG 103

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            D  WRYA+V+FGKV L++P FW G    A  GK++  +LPRHARLQNMTYS+R+K+   L
Sbjct: 104  DGEWRYATVKFGKVTLDKPKFWGG----AASGKEY-NMLPRHARLQNMTYSSRMKINISL 158

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTT--DVIVGRIPVMVKSAICWMSEVEKGDCE 941
            +IYTQ+ V SDKFKTGK +YVDK  +   +   DV +GR+PVMV S +CWM + +K DCE
Sbjct: 159  EIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCE 218

Query: 942  FDQGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEH 1121
            FD+GGYF++KGAEK FIAQEQ CL+RLW+SN   W VAYRSE KR R+ ++LVEN K+E 
Sbjct: 219  FDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSED 278

Query: 1122 IQGGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIH--DA 1295
            ++  EKV++VYF   EVP+WILFFALGV SDKE+VDLID   DD  + NILFAS+   D 
Sbjct: 279  LKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDN 338

Query: 1296 DEKCDGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKC 1472
            D+K   FR+GK A+ F+D  I+++ FPPA+   + ++ YLF  L G+ QK  FLGYMVKC
Sbjct: 339  DDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKC 398

Query: 1473 LLQSYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHG 1652
            LLQ+Y+GRRKCDNRDDFRNK              VH+ HA +RM KA+QRDLYGDR +H 
Sbjct: 399  LLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHP 458

Query: 1653 IEHYLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVS 1832
            IEHYLDASI+TNG++R+FSTGAWAH FK+ +R+SGVVA L R NPLQ+  ++R+TRQQV+
Sbjct: 459  IEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVA 518

Query: 1833 YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVN 2012
            YTGKVGDARYPHPSHWG++CFLSTPDGENCGL+KN++ TG+VS N  +     +  TL  
Sbjct: 519  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKS----ITPTLFR 574

Query: 2013 CGMEKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQ 2192
            CGME LV +T T   GK ++ +DGEWVGVC +SLSFV  +           QVE+KRD Q
Sbjct: 575  CGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQ 634

Query: 2193 NAEVRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAW 2372
              EVRIF D GRILRPLLVVENL +I   KG+ ++F++LLDK            DCR AW
Sbjct: 635  LKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAW 694

Query: 2373 GIKFLFEDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSS 2552
             IK L ED+G   KY+HCELDMSFLLG+SCG++PFANHDHARR L+QS+KHS QAIG+S 
Sbjct: 695  SIKHLMEDEGTT-KYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSP 753

Query: 2553 TNPNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNV 2723
            TN N R+DTLSHQ++YPQRPLFR++ +DCLG P        ILPK EF+NGQN IVAVNV
Sbjct: 754  TNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNV 813

Query: 2724 HLGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIG 2903
            HLGYNQEDSLVMNRASLERGMFR+EHIRSYKAEVDN ESSEKRRK DD++ FGK QSKIG
Sbjct: 814  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIG 873

Query: 2904 RVDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNF 3083
            RVD+LDDDGFP+IGANL SGDI+IGRCAESGADHS+KLKHTE+GMVQKVVLS+NDDGKN+
Sbjct: 874  RVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNY 933

Query: 3084 AVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTP 3263
            AVVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTP
Sbjct: 934  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 993

Query: 3264 GQLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHR 3377
            GQLLEAALGKGIA GG+LKYATPFST SV+AIT+QLHR
Sbjct: 994  GQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHR 1031


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1357 bits (3513), Expect = 0.0
 Identities = 659/1000 (65%), Positives = 806/1000 (80%), Gaps = 9/1000 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  +  +CKKAS  FF +YGLI+HQI S+N+F+  G+QK F++ G++ V PG+DPSKKG
Sbjct: 47   GEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDPSKKG 106

Query: 588  D-EGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETH 764
            + E +RYASV+FG V+L++PMFW GE     G     K+LPRHAR+Q MTY++++K++  
Sbjct: 107  ENEHFRYASVKFGNVKLDKPMFWGGE-----GNAQEFKMLPRHARIQRMTYASKVKIQVK 161

Query: 765  LQIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEF 944
            +Q+Y  +KV+SDKFKTGK+E++D+ ++ +   ++I+GR+PVMVKS +CWM E EK D EF
Sbjct: 162  VQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEKEDDEF 221

Query: 945  DQGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHI 1124
            D GGYFIVKGAEKTFIAQEQ  LKRLWV N P W +AY+S+ KR R+ +KLV N + E +
Sbjct: 222  DHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRGEEV 281

Query: 1125 QGGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEK 1304
            + G+  ++VYF   EVP+W+LFFALGV SDKE+VDLI C  DD RI NILFAS+ DADEK
Sbjct: 282  ENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEK 341

Query: 1305 CDGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQ 1481
            C  FR+G+ A+ +++K +K  +FPP+E   E ++ Y+FP +SG  +KARFL YMVK LL 
Sbjct: 342  CGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLL 401

Query: 1482 SYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEH 1661
            +Y+GRRKCDNRDDFRNK              VH+ HA KRM KA+QRDLYGDRD+  IEH
Sbjct: 402  AYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVRPIEH 461

Query: 1662 YLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTG 1841
            YLDASI+TNG+ R+FSTGAW+HP+K+ +R+SGVVAN+ RTNPLQ+  ++R+ RQQV YTG
Sbjct: 462  YLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTG 521

Query: 1842 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGM 2021
            KVGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+++       +L  L++CGM
Sbjct: 522  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSE-YILPKLLDCGM 580

Query: 2022 EKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAE 2201
            E+LV DT T L  KDKVL++G+WVGVC +S SFV EL        LP QVEIKRD    E
Sbjct: 581  EELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHE 640

Query: 2202 VRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIK 2381
            VRI+ D GRILRPLLVV NL KIK  K D  SF++LLDK            DC TAWG++
Sbjct: 641  VRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVE 700

Query: 2382 FLFEDKGK-DIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +LF  +GK  +KYTHCELDMSFLLG+SC ++PFANHDHARRVLYQS+KHS QAIG+S+TN
Sbjct: 701  YLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTN 760

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQIL---PKAEFFNGQNGIVAVN 2720
            PNIR+DTLSHQ++YPQ+PLFR++ SDCLG+P   LG+N+I    PKAEF+NGQN IVAVN
Sbjct: 761  PNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVN 820

Query: 2721 VHLGYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKI 2900
            VHLGYNQEDSLVMNRASL+RGMFR+EHIRSYK+E+DN ESS+K+RK +D V F K+QSKI
Sbjct: 821  VHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKI 880

Query: 2901 GRVDNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKN 3080
            GRVD+LDDDGFP++GANL SGDIIIG+ AESGAD+SVKLKHTERG VQKVVLS+ND+GKN
Sbjct: 881  GRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKN 940

Query: 3081 FAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQT 3260
            FAVVSLRQVRSP LGDKFSSMHGQKGVLG+LESQENFPFT+QGIVPDIVINPHAFPSRQT
Sbjct: 941  FAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQT 1000

Query: 3261 PGQLLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            PGQLLEAALGKGIACGG L+ ATPFST SV+AITEQLHRA
Sbjct: 1001 PGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRA 1040


>gb|ESW08936.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
          Length = 1202

 Score = 1354 bits (3505), Expect = 0.0
 Identities = 658/997 (65%), Positives = 799/997 (80%), Gaps = 6/997 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE +    CKK S  FF++YGLI+HQI SYN++   G+Q+ FD  GE+ V PG+DPSKKG
Sbjct: 48   GEEAFRYHCKKFSMLFFEEYGLISHQINSYNHYANVGLQRTFDGFGELVVTPGFDPSKKG 107

Query: 588  -DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETH 764
             +E +RYASV+FGKV L++PMFW GE     G     K+LPRHARLQ MTY++++K+   
Sbjct: 108  ANEHYRYASVKFGKVTLDKPMFWGGE-----GNAQEFKMLPRHARLQRMTYASKIKILVK 162

Query: 765  LQIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEF 944
            +Q+Y  +KV+SDKFKTGK EY+DK IL +   ++I+GR+PVMVKS +CWM+  EK DCEF
Sbjct: 163  VQVYVPKKVRSDKFKTGKEEYLDKEILKEDEREMIIGRLPVMVKSDLCWMNG-EKDDCEF 221

Query: 945  DQGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHI 1124
            D GGYF++KGAEKTFIAQEQ  LKRLWV N P W +AY+S+ KR R+ +KLV N + E  
Sbjct: 222  DHGGYFLIKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRNEEG 281

Query: 1125 QGGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEK 1304
            Q G+  ++VYF   EVP+W+LFFALGV SDK+VVDLI CD DD RI NIL AS+ DADEK
Sbjct: 282  QNGDMFLTVYFLSVEVPVWVLFFALGVTSDKDVVDLIGCDNDDARIQNILLASVCDADEK 341

Query: 1305 CDGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQ 1481
            C  FR+G+ A+ +++K IK  +FPP E   E ++ Y+FP +SG  +KARFL YMVK LL 
Sbjct: 342  CGAFRRGRNAVQYLEKYIKSVQFPPPESIEECLEMYVFPGISGLNRKARFLAYMVKGLLL 401

Query: 1482 SYSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEH 1661
            +Y+GRRKCDNRDDFRNK              VH+ HA KRM KA+QRDLYG+RD+  IEH
Sbjct: 402  AYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMSKALQRDLYGERDVRPIEH 461

Query: 1662 YLDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTG 1841
            YLDASI+TNG+ R+FSTGAW+HP+K+ +R+SGVVAN+ RTNPLQ+  ++R+ RQQV YTG
Sbjct: 462  YLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTG 521

Query: 1842 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGM 2021
            KVGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A TG+VS+++     ++L  TL+NCGM
Sbjct: 522  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDVSNASESIL-PTLLNCGM 580

Query: 2022 EKLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAE 2201
            E+LV DT T +  KDKV ++G+WVGVC +S  FV EL        LP QVEIKRD    E
Sbjct: 581  EELVNDTTTHMGNKDKVFLNGDWVGVCPDSSWFVAELRSERRKNKLPHQVEIKRDQSQHE 640

Query: 2202 VRIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIK 2381
            VRI+ D GRILRPLLVV NL +IK  K D +SF TLL++            DC TAWG++
Sbjct: 641  VRIYSDAGRILRPLLVVGNLLRIKRFKSDRYSFRTLLEEGVIELIGPEEEEDCCTAWGVQ 700

Query: 2382 FLFEDKGK-DIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTN 2558
            +LF  +GK  +KYTHCELDMSFLLG+SC ++PFANHDHARRVLYQS+KHS QAIG+S+ N
Sbjct: 701  YLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLN 760

Query: 2559 PNIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHL 2729
            PN R+DTLSHQ++YPQRPLF+++ SDCLG+P   LG+++I PKAEF+NGQN IVAVNVHL
Sbjct: 761  PNTRIDTLSHQLHYPQRPLFQTMASDCLGKPTSPLGQSKIHPKAEFYNGQNAIVAVNVHL 820

Query: 2730 GYNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRV 2909
            GYNQEDSLVMNRASL+RGMFR+EHIRSYK+E+DN +SSEK+RK +D V FGK+QSKIGRV
Sbjct: 821  GYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKQSSEKKRKSEDIVNFGKLQSKIGRV 880

Query: 2910 DNLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAV 3089
            D+LDDDGFP++GANL SGDIIIGRCAESGAD+SVKLKHTERG VQKVVLS+ND+GKNFA 
Sbjct: 881  DSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAA 940

Query: 3090 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 3269
            VSLRQVRSP LGDKFSSMHGQKGVLG+LE QENFPFT+QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 941  VSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQ 1000

Query: 3270 LLEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LLEAALGKGIACGG L++ATPFST SV+AIT+QLHRA
Sbjct: 1001 LLEAALGKGIACGGKLRHATPFSTPSVDAITDQLHRA 1037


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 669/996 (67%), Positives = 784/996 (78%), Gaps = 5/996 (0%)
 Frame = +3

Query: 408  GEASLMNFCKKASSSFFKQYGLINHQITSYNNFVCYGIQKVFDAIGEITVNPGYDPSKKG 587
            GE  L  FCK+AS SFFK+YGL++HQI SYN+FV  GIQ+VFD+ GEI V P +DPSKKG
Sbjct: 50   GEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPSKKG 109

Query: 588  DEGWRYASVRFGKVELERPMFWTGEKFHADGGKDFIKLLPRHARLQNMTYSARLKVETHL 767
            +  WR+A+++FGKV L +P FW G    +D  K++  +LPRHARLQNMTYSAR+ V   +
Sbjct: 110  NADWRFAAIKFGKVTLSKPCFWGG----SDSDKEY-NMLPRHARLQNMTYSARMSVNITV 164

Query: 768  QIYTQEKVKSDKFKTGKSEYVDKRILSDVTTDVIVGRIPVMVKSAICWMSEVEKGDCEFD 947
            Q+YTQ  V+SDKFKTG  + ++K  LS  + D+I+GRIPVMVKS +CWM  VEKGDCEFD
Sbjct: 165  QVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGDCEFD 224

Query: 948  QGGYFIVKGAEKTFIAQEQSCLKRLWVSNDPYWKVAYRSEFKRRRVHVKLVENPKAEHIQ 1127
            QGGYFI+ GAEKTFIAQEQSCLKRL ++N     VAYRSE KR R+ ++L    K E+++
Sbjct: 225  QGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKLENVE 284

Query: 1128 GGEKVISVYFSVCEVPIWILFFALGVKSDKEVVDLIDCDTDDGRISNILFASIHDADEKC 1307
            G EKV+SVYF   E+P+WI FFALGV SDKEV+DLID   +D  ISNILFASI DADE+ 
Sbjct: 285  GVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDADERK 344

Query: 1308 DGFRKGK-AMDFIDKIIKESKFPPAEPTVEFIDTYLFPCLSGNGQKARFLGYMVKCLLQS 1484
            D FR+G  A+ +++  IK + FPP E   + I  YLFP + G  QKARFLGYMVKCLLQ+
Sbjct: 345  DDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQT 404

Query: 1485 YSGRRKCDNRDDFRNKXXXXXXXXXXXXXXVHMRHAEKRMVKAMQRDLYGDRDLHGIEHY 1664
              G RKCDNRDDFRNK               H+ HA ++M KA+QRDL GD  +  +EHY
Sbjct: 405  SIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVRPVEHY 464

Query: 1665 LDASIVTNGMTRSFSTGAWAHPFKKSDRVSGVVANLRRTNPLQSTCDMRKTRQQVSYTGK 1844
            LDASIVTNG++R+FSTGAW HPFK+ +R+SGVVAN+ R NPLQ+  DMRKTRQQV YTGK
Sbjct: 465  LDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQVQYTGK 524

Query: 1845 VGDARYPHPSHWGKICFLSTPDGENCGLVKNIAATGVVSSNILEEDRALLLGTLVNCGME 2024
             GDARYPHPSHWGK+CFLSTPDGENCGLVKN+A T +VS NI E     +L  L  CG+E
Sbjct: 525  AGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINISEP----ILPKLFKCGIE 580

Query: 2025 KLVKDTGTQLRGKDKVLVDGEWVGVCANSLSFVEELXXXXXXXXLPSQVEIKRDVQNAEV 2204
            +LV DT T L GK KV ++G+WVG+C +S  FV +L        LP QVEIKRD    EV
Sbjct: 581  ELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEV 640

Query: 2205 RIFGDTGRILRPLLVVENLKKIKVLKGDTFSFETLLDKXXXXXXXXXXXXDCRTAWGIKF 2384
            RIF D GRILRPLLVV+ LKKIK  KG+  +F+  LDK            DCRTAW IK+
Sbjct: 641  RIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKY 700

Query: 2385 LF-EDKGKDIKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSSTNP 2561
            LF E++G  +KYTHCELDMSFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIGYS+TNP
Sbjct: 701  LFMEEQGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNP 760

Query: 2562 NIRLDTLSHQMYYPQRPLFRSVISDCLGEP---LGRNQILPKAEFFNGQNGIVAVNVHLG 2732
            N+R+DTLSH ++YPQRPLFR++I+D LG+P   +G N  +PK E+FNGQN IVAVNVHLG
Sbjct: 761  NLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLG 820

Query: 2733 YNQEDSLVMNRASLERGMFRTEHIRSYKAEVDNNESSEKRRKFDDSVTFGKIQSKIGRVD 2912
            YNQEDS+VMNRASLERGMFR+EHIRSYKAEV+N  S EKRRK D+ V FGKIQSK GRVD
Sbjct: 821  YNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLEKRRKPDECVNFGKIQSKFGRVD 880

Query: 2913 NLDDDGFPFIGANLHSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNFAVV 3092
            NLDDDGFP +GA+L SGDIIIGRC+ESG DHS+KLKHTERGMVQKVVLS+ND GKNFAVV
Sbjct: 881  NLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAVV 940

Query: 3093 SLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL 3272
            SLRQVRSP LGDKFSSMHGQKGVLG+LE QENFPFT QGIVPDIVINPHAFPSRQTPGQL
Sbjct: 941  SLRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1000

Query: 3273 LEAALGKGIACGGTLKYATPFSTLSVEAITEQLHRA 3380
            LEAALGKGIACGG+ +YATPFSTLSV+ IT+QLHRA
Sbjct: 1001 LEAALGKGIACGGSKRYATPFSTLSVDDITDQLHRA 1036