BLASTX nr result
ID: Achyranthes22_contig00010390
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Achyranthes22_contig00010390
(2363 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein... 460 e-126
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein... 457 e-126
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 452 e-124
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 451 e-124
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 449 e-123
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 447 e-123
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein... 447 e-122
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 444 e-121
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus... 443 e-121
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr... 443 e-121
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 442 e-121
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 442 e-121
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein... 440 e-120
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 439 e-120
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ... 438 e-120
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 437 e-119
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr... 432 e-118
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein... 428 e-117
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 427 e-116
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th... 424 e-115
>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
[Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform 2 [Solanum lycopersicum]
Length = 645
Score = 460 bits (1183), Expect = e-126
Identities = 232/401 (57%), Positives = 291/401 (72%), Gaps = 5/401 (1%)
Frame = -2
Query: 1465 MDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDGRS 1286
MDDSDD++ S +PT+E IK I+IRRSKLAKWFMEPFF+ELIV CFVRVGIG
Sbjct: 249 MDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGP 308
Query: 1285 IYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEFNE 1106
IYRLC+V+NVDAS+PN++Y L+NKTT K+LN VWG++ SAARWQMA +SDSPP +EF++
Sbjct: 309 IYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAARWQMAMISDSPPLRDEFDQ 368
Query: 1105 WKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAEKE 926
W +EVE+SGGRMP +V EK+EAI K+N+FVYSA+ VKQMLQ+KK + RP+N+AAEK+
Sbjct: 369 WVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKD 428
Query: 925 KLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR-VS 749
+LRR++E+AK + + AEVERI RL ELE +R+ QEKD KA +LAEMNRKNR ENF+ S
Sbjct: 429 RLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKARRLAEMNRKNRVENFKNAS 488
Query: 748 SMRGAGRSLNPGDAGYDPFSRRWTRSTNYY----SARQEDKAGKTAEEPPTNEGGVNDSK 581
+R + L G+AGYDPFSRRWTRSTNY+ S + A A E GG D
Sbjct: 489 ELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAAAAAALAAEDNNGAGGTADGG 548
Query: 580 TSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFG 401
+ + GKLVDTNAPVD+GTESN LHDF+LPISL +L FG
Sbjct: 549 MAAT-----------AAALQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFG 597
Query: 400 GAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
G+ G + F+ARKQ+IE+ +GC VP +DGR H +TLSV DY
Sbjct: 598 GSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDY 638
Score = 155 bits (392), Expect = 8e-35
Identities = 81/144 (56%), Positives = 106/144 (73%), Gaps = 2/144 (1%)
Frame = -2
Query: 2206 DLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISGS 2027
+L ++LLEAAGRT RN+ H SK HK+SYSD+GSDS+D+DSDD G++ RK+SGS
Sbjct: 4 ELTDLLLEAAGRTNTGGRNRPPHS-SKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGS 62
Query: 2026 QVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKLT 1853
QVPLKKR + RDDD S + + DG + SD +GSDLYKD++DR++L+++T
Sbjct: 63 QVPLKKRLDPQERDDDHSSHGEGNDGDGYGNE----SDDDSIGSDLYKDDDDRQKLAQMT 118
Query: 1852 ELEREMILSDRAAKKDDRKLHKQM 1781
ELEREMIL+DRAAKK DR LH +M
Sbjct: 119 ELEREMILTDRAAKKSDRSLHDKM 142
>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
tuberosum]
Length = 652
Score = 457 bits (1176), Expect = e-126
Identities = 225/397 (56%), Positives = 288/397 (72%), Gaps = 1/397 (0%)
Frame = -2
Query: 1465 MDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDGRS 1286
MDDSDD++ S +PT+E IK I+IRRSKLAKWFMEPFF+ELIV CFVRVGIG
Sbjct: 249 MDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGP 308
Query: 1285 IYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEFNE 1106
IYRLC+V+NVD+S+PN++Y L+NKTT K+LN VWG++ SAARWQMA VSDSPP +EF++
Sbjct: 309 IYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENSAARWQMAMVSDSPPLRDEFDQ 368
Query: 1105 WKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAEKE 926
W +EVE+SGGRMP +V EK+EAI K+N+FVYSA+ VKQMLQ+KK + RP+N+AAEK+
Sbjct: 369 WVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKD 428
Query: 925 KLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR-VS 749
+LRR++E+AK + + AEVERI RL EL+ +R+ QEKD KA +LAEMNRKNR ENF+ S
Sbjct: 429 RLRRDMEVAKMKNDEAEVERIKARLQELDDSRKVQEKDDKARRLAEMNRKNRVENFKNAS 488
Query: 748 SMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTSDS 569
+R + L G AGYDPFSRRWTRSTNY++ ++A + + + +
Sbjct: 489 ELRPVNQLLKAGQAGYDPFSRRWTRSTNYFAKGANEEAEGASNGEVAAAAALAAEDNNGA 548
Query: 568 KDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGAYG 389
GKLVDTNAPVD+GTESN LHDF+LPISL +L FGG+ G
Sbjct: 549 SGTADGGMAATAAALQAAAGAGKLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQG 608
Query: 388 ARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
+ F+ARKQ+IE+ +GC VP +DGR H +TLSV DY
Sbjct: 609 GQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDY 645
Score = 152 bits (383), Expect = 8e-34
Identities = 81/146 (55%), Positives = 107/146 (73%), Gaps = 4/146 (2%)
Frame = -2
Query: 2206 DLENMLLEAAGRTGASRRNKQSHPP--SKMQHKASYSDNGSDSKDEDSDDNHGHASRKIS 2033
+L ++LLEAAGRT RN+ PP S+ HK+SYSD+GSDS+D+DSDD G++ RK+S
Sbjct: 4 ELTDLLLEAAGRTNTGGRNR---PPQSSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLS 60
Query: 2032 GSQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSK 1859
GSQVPLKKR + RDDD S + + DG + SD +GSDLYKD++DR++L++
Sbjct: 61 GSQVPLKKRLDPQERDDDHSSHGEGNDGDGYGNE----SDDDSIGSDLYKDDDDRQKLAQ 116
Query: 1858 LTELEREMILSDRAAKKDDRKLHKQM 1781
+TELEREMIL+DRAAKK DR LH +M
Sbjct: 117 MTELEREMILTDRAAKKSDRSLHDKM 142
>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
RNA polymerase-associated protein RTF1 homolog isoform X2
[Glycine max]
Length = 656
Score = 452 bits (1164), Expect = e-124
Identities = 237/400 (59%), Positives = 290/400 (72%), Gaps = 1/400 (0%)
Frame = -2
Query: 1474 GGVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKD 1295
GG++D SDD+R S P+++ +K ITIRRSKLAKWFMEPFFEELIV CFVRVGIG
Sbjct: 252 GGIVD-SDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSK 310
Query: 1294 GRSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEE 1115
IYRLCMV+NVDASEP+++Y L+NKTT+KYLN VWG++ SAARWQMA VSDS P EE
Sbjct: 311 TGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEE 370
Query: 1114 FNEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAA 935
F +W KEV++SGGRMP +V EK++AI K +FVYSA VKQMLQEKK S RP+N+AA
Sbjct: 371 FKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAA 430
Query: 934 EKEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR 755
EK++LRRELEIA+ + + AEVERI RL ELE +RQ+++KD KALKLAEMNRKNR ENF+
Sbjct: 431 EKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKLAEMNRKNRFENFK 490
Query: 754 -VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKT 578
S M+ L G+AGYDPFSRRWTRS NYY+A+ +KA N G + T
Sbjct: 491 NASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGT 550
Query: 577 SDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGG 398
+ GKLVDT+APVD+GTESN+LH+FELPISL LL FGG
Sbjct: 551 G-APVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGG 609
Query: 397 AYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
A GA+ F+ARKQKIE+ +G +V +DGR H +TL+V DY
Sbjct: 610 AQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDY 649
Score = 170 bits (431), Expect = 2e-39
Identities = 90/148 (60%), Positives = 112/148 (75%), Gaps = 2/148 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRTG + RN+ S P S+ +H +YSD GSDS+DEDSDD +ASRK SG
Sbjct: 2 ADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDD GS + + DG SD + SSD S++G DLYKDE+DR +LS++
Sbjct: 62 SQVPLKKRLDPTERDDDLGSQ-EEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSR 1772
TEL+REMILSDRA KKDD+ L ++ S+
Sbjct: 121 TELQREMILSDRATKKDDKNLLGKIASK 148
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 451 bits (1160), Expect = e-124
Identities = 232/399 (58%), Positives = 287/399 (71%), Gaps = 1/399 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSDD+R + PT++ IK ITIRRSKLAKWFMEPFFEELIV C+VRVGIG
Sbjct: 256 GGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKS 315
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDA+EP + Y L+NKTT+KYLN VWG++ SAARWQMA +SDSPP EEF
Sbjct: 316 GPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEF 375
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+ +E+E+SGGRMP +V EK+EA+ K +FVYSA VKQMLQEKK S+RP+NIAAE
Sbjct: 376 RQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAE 435
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRR+LEIA+ + + AEVERI +RL +LE +RQ+QEKD KA++LAEMNRKNRAENF+
Sbjct: 436 KDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAKAVRLAEMNRKNRAENFKN 495
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ L G+AGYDPFSRRWTRS NYY A+ A A G + +
Sbjct: 496 ASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPG-ADAAAVANGDRIGVIASGNGN 554
Query: 574 DSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
D++ GKLVDT+APVD+GTESN+LHDFE+PISL L FGG
Sbjct: 555 DARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGP 614
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
GA F+ARKQ+IE+ +GCQVP +DGR H +TL+V DY
Sbjct: 615 QGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDY 653
Score = 183 bits (464), Expect = 3e-43
Identities = 93/156 (59%), Positives = 121/156 (77%), Gaps = 2/156 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRTG RN+ S PPS+ + + SYSD GSDS+D+DSDD+HG+ASRK SG
Sbjct: 2 ADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDDQGS + DG S HE SSD SDVG DLYK+E+DR +L+++
Sbjct: 62 SQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQM 121
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSRLINEKKTQ 1748
TELERE+ILS+RA K+ D+K +++RS+ N++ ++
Sbjct: 122 TELERELILSERADKRGDKKFTEKIRSKRENDRPSR 157
>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
Length = 658
Score = 449 bits (1154), Expect = e-123
Identities = 231/406 (56%), Positives = 291/406 (71%), Gaps = 8/406 (1%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSDDER S T++ IK +T+RRSKLAKW MEPFFEELIV CFVRVGIG
Sbjct: 252 GGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKS 311
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDASEP+++Y LDNK THKYLN VWG++ SAARWQMA VSDS P EEF
Sbjct: 312 GPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNENSAARWQMAMVSDSVPNEEEF 371
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W +EVE+SGGRMP +++ +K+E+I K N+FVYSA VKQMLQEKK SARP+NIA E
Sbjct: 372 KQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQMLQEKKSASARPLNIALE 431
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELE+A+ + + EV+RI RL ELE +R++++ D KA++LAEMNRKNR ENF+
Sbjct: 432 KDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTDAKAIRLAEMNRKNRVENFKN 491
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ L G+AGYDPFSRRWTRS NYY K G+ E+ N G N+ ++
Sbjct: 492 ASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVG----KPGEVKEDSGANAG--NNGAST 545
Query: 574 DSKD-------XXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTL 416
D+++ GKLVDTNAPVD+GT SN+LH+FELPISL++
Sbjct: 546 DAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSNMLHNFELPISLSV 605
Query: 415 LDSFGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
L FGG GA+ F+ARKQ+IE+ +GC+VP +DGR H +TLSVGDY
Sbjct: 606 LQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDY 651
Score = 166 bits (420), Expect = 4e-38
Identities = 88/154 (57%), Positives = 119/154 (77%), Gaps = 2/154 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
A+LEN+LLEAAGRT ++ RN+ S PPS+ + + SYSD GSDS+D+DSDD+ G+A+RK SG
Sbjct: 2 AELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR DDDQGS+ + G+ D SD E S SDVGSDLYKD++DR +L+++
Sbjct: 62 SQVPLKKRLDPTEMDDDQGSE-EEGDDDRGSDREGDSE--SDVGSDLYKDDDDRRKLAEM 118
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSRLINEKK 1754
TEL+REMIL DRA+KK+D+ L +++R + N+ K
Sbjct: 119 TELQREMILLDRASKKEDKNLKEKLRPKWDNKGK 152
>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 447 bits (1151), Expect = e-123
Identities = 235/399 (58%), Positives = 287/399 (71%), Gaps = 1/399 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G + DSDD+R S P+++ IK ITIRRSKLAKWFMEPFFEELIV CFVRVGIG
Sbjct: 252 GGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKT 311
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDASEP+++Y L+NKTT+KYLN VWG++ SAARWQMA VSDS P EEF
Sbjct: 312 GPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEF 371
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W KEV+ SGGRMP +V EK++AI K +FVYSA VKQMLQEKK S RP+N+AAE
Sbjct: 372 KQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAE 431
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELEIA+ + + AEVERI RL ELE +RQ+++KD KALKLAEMNRKNR ENF+
Sbjct: 432 KDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENFKN 491
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ L G+AGYDPFSRRWTRS NYY+A+ +KA N G + T
Sbjct: 492 ASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNATG 551
Query: 574 DSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
+ GKLVDT+APVD+GTESN+LH+FELPISL LL +GGA
Sbjct: 552 -APVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGA 610
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
GA+ F+ARKQ+IES +G +V +DGR H +TL+V DY
Sbjct: 611 PGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSDY 649
Score = 176 bits (447), Expect = 3e-41
Identities = 91/148 (61%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRTG + RN+ S PPS+ +H +YSD GSDS+D+DSDD +ASRK SG
Sbjct: 2 ADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDD GS + + DG SDH+ SSD S++G DLYKDE+DR +LS++
Sbjct: 62 SQVPLKKRLDPTERDDDLGSQ-EEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSR 1772
TEL+REMILSDRA KKDD+ L ++ S+
Sbjct: 121 TELQREMILSDRATKKDDKNLLGKIASK 148
>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Cicer arietinum] gi|502110282|ref|XP_004493843.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Cicer arietinum]
Length = 653
Score = 447 bits (1150), Expect = e-122
Identities = 235/404 (58%), Positives = 295/404 (73%), Gaps = 5/404 (1%)
Frame = -2
Query: 1474 GGVMDDSDDERDKTFSN--IPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGM 1301
GG++D SDD+R T S +P++E IK ITIRRSKLAKWFMEPFFEELIV CFVRVGIG
Sbjct: 247 GGIID-SDDDRIMTGSGFEVPSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGR 305
Query: 1300 KDGRSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTL 1121
IYRLCMV+NVDAS+P+++Y LDNKTT+KYLN VWG++ SAARWQMA VSDSPP
Sbjct: 306 SKTGPIYRLCMVKNVDASDPDRQYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLE 365
Query: 1120 EEFNEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNI 941
EEF +W KEVE+SGGRM +V EK +AI K NSFVYSA VKQM++EKK S RP+N+
Sbjct: 366 EEFKQWVKEVERSGGRMLMKLDVMEKNQAIQKINSFVYSAATVKQMIEEKKSNSRRPLNV 425
Query: 940 AAEKEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAEN 761
AAEK++L+R+LEIA+ + +AAEVE+I RL ELE +R++Q KD KAL+L+EMNRKNR EN
Sbjct: 426 AAEKDRLKRQLEIAESKKDAAEVEKIKTRLQELEASRKTQAKDAKALRLSEMNRKNRFEN 485
Query: 760 FR-VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVND- 587
F+ S ++ + L G+AGYDPFSRRWTRS NYY+A+Q ++A A ++ G V D
Sbjct: 486 FKNASELKPVNKGLKAGEAGYDPFSRRWTRSRNYYNAKQAEEA---AAGNNSSGGAVGDR 542
Query: 586 -SKTSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLD 410
S + GKLVDT APVD+GTESN LH+FELPISLT+L
Sbjct: 543 GSNGVGATVAGEAGVVATAEALEAAADAGKLVDTRAPVDQGTESNFLHNFELPISLTILQ 602
Query: 409 SFGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
FGGA G F+A+KQ+IE +G +VP +DG+ H++TL+V DY
Sbjct: 603 KFGGAQGVHAGFIAKKQRIEEIVGFRVPENDGKSHMLTLTVSDY 646
Score = 136 bits (342), Expect = 5e-29
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 3/149 (2%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDN---HGHASRK 2039
ADLE +LLEAAGR N S PS+ + + + D GSDS D+DSDD+ HG+ RK
Sbjct: 2 ADLEKLLLEAAGR------NIHSLTPSRRKRRGEFLDGGSDSGDDDSDDDGDDHGYRGRK 55
Query: 2038 ISGSQVPLKKRSKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSK 1859
S +QVPLKKR + G D D+ D SD E SS+ SDVG DLYKDE+DR++LS+
Sbjct: 56 PSATQVPLKKRFET----SGKDDDVSGDDDGSDREGDSSEDSDVGDDLYKDEDDRQKLSE 111
Query: 1858 LTELEREMILSDRAAKKDDRKLHKQMRSR 1772
+TEL+REMILSDRA+KKDD+ ++ S+
Sbjct: 112 MTELQREMILSDRASKKDDKDFLGKIASK 140
>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
Length = 646
Score = 444 bits (1141), Expect = e-121
Identities = 229/399 (57%), Positives = 289/399 (72%), Gaps = 3/399 (0%)
Frame = -2
Query: 1465 MDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDGRS 1286
M DSDDER + T++ IK ITIRRSKLAKW MEPFFEELIV CFVRVGIG
Sbjct: 246 MMDSDDERSEGL----TFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGP 301
Query: 1285 IYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEFNE 1106
IYRLCMV+NVDAS+P++KY L+NKTTHKYLN VWG++ SAARWQMA +SDS P EEF +
Sbjct: 302 IYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQ 361
Query: 1105 WKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAEKE 926
W +EVE+SGGR+P +V EK+EAI K N+FVYSA VKQM++EKK S+RP+NIA EK+
Sbjct: 362 WVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKD 421
Query: 925 KLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR-VS 749
+LRRELE+A+ + + AEVERI RL +LE RQSQ KD+KA++LAEMNRKNR ENF+ S
Sbjct: 422 RLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNAS 481
Query: 748 SMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTSDS 569
++ L G+AGYDPFSRRWTRS NYY ++ ++ G+ AE +G + D +++ +
Sbjct: 482 ELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGE-AEAIVDADGALADIESNGT 540
Query: 568 K--DXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
GKL+DT+APVD GTESN++H+FELPISL L FGG
Sbjct: 541 AVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGP 600
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
GA+ FLARKQ+IE+ +GC+VP +DGR H +TL+V DY
Sbjct: 601 QGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDY 639
Score = 155 bits (392), Expect = 8e-35
Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRT ++ +++ SH S+ + SYSD GSDS+ +DSDD G+ASRK SG
Sbjct: 2 ADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
+QVPLKKR DD+QGS + D SD S++ SDVGSDLYKDE+DR +L+++
Sbjct: 62 TQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNE-SDVGSDLYKDEDDRRKLAEM 120
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSR 1772
+EL+RE+ILSDRA KKDD+ L ++ R +
Sbjct: 121 SELQRELILSDRAQKKDDKSLKEKFRPK 148
>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
Length = 654
Score = 443 bits (1140), Expect = e-121
Identities = 233/399 (58%), Positives = 288/399 (72%), Gaps = 1/399 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G + DSDD+R T S P+++ IK ITIRRSKLAKWFMEPFFEELIV CFVRVGIG
Sbjct: 253 GGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKT 312
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDASEP+++Y L+NKTT+KYLN VWG++ SAARWQMA VSDS P EEF
Sbjct: 313 GPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEF 372
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W KEV++SGGRMP +V EK++AI K +FVYSA VKQMLQEKK S RP+N+AAE
Sbjct: 373 KQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAE 432
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELEIA+ + + AEV+RI RL ELE +R +++KD KALKLAEMNRKNR ENF+
Sbjct: 433 KDRLRRELEIAQSKHDEAEVDRIKARLQELEASRHAKQKDAKALKLAEMNRKNRFENFKN 492
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ L G+AGYDPFSRRWTRS NYY+ ++ AG + G N +
Sbjct: 493 ASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTG-EKAAAGNNSVNGIVAGPGTNSTGAP 551
Query: 574 DSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
+ + GKLVDT+APVD+GTESN+LH+FELPISL LL +GGA
Sbjct: 552 VTAE---AGLVATAAALEAAADAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGA 608
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
GA+ F+ARKQ+IES +G +V +DGR H +TLSV DY
Sbjct: 609 QGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLSVSDY 647
Score = 182 bits (461), Expect = 8e-43
Identities = 92/148 (62%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRTG S RN+ S PPS+ +H +YSD GSDS+D+DSDD +ASRK SG
Sbjct: 2 ADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDD GS + + DG SDH+ SSD S++G DLYKDE+DR +LS++
Sbjct: 62 SQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 121
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSR 1772
TEL+REMILSDRA KKDD+ L ++ S+
Sbjct: 122 TELQREMILSDRATKKDDKNLLGKIASK 149
>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
gi|557524836|gb|ESR36142.1| hypothetical protein
CICLE_v10028000mg [Citrus clementina]
Length = 643
Score = 443 bits (1139), Expect = e-121
Identities = 229/399 (57%), Positives = 281/399 (70%), Gaps = 1/399 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSDD+ S PTY+ IK ITIRRSKLAKWFMEPFFEELIV CFVRVGIG
Sbjct: 242 GGMADSDDD-GAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKN 300
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDA+EP++ Y L+N+TT KYLN WG++ SAARWQMA VSDSPP EEF
Sbjct: 301 GPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEF 360
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W +EVE++GGRMP +V EK+E+I K N+FVYSA VKQMLQEKK S+RP+N+AAE
Sbjct: 361 KQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAE 420
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELE+A+ R + ++ERI RL ELE +R S+ KD KA++LAEMNRKNR ENF+
Sbjct: 421 KDRLRRELEVAQSRHDDVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKN 480
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ SL G+AGYDPFSRRWTRS NYY ++ + + E ++ GV
Sbjct: 481 ASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGE---EVTAEANGDKNGVPGGANG 537
Query: 574 DSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
+ GKLVDTNAP+D GTESN+LHDFEL ISL L FGG
Sbjct: 538 EEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGP 597
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
G F+ARKQ+IE+ +GCQVP +DGR H +TL+VGDY
Sbjct: 598 QGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDY 636
Score = 128 bits (322), Expect = 1e-26
Identities = 77/148 (52%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRT ++ RN+ S SK + + SYS GSDS+D+DSDDN G+ SRK SG
Sbjct: 2 ADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYS--GSDSRDDDSDDNRGYGSRKPSG 59
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDDQGS + G S+HE SS+ SD D+N ++
Sbjct: 60 SQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDSSNESD-------DDNH----GQM 108
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSR 1772
TELEREM++ +R KK D+ L + RSR
Sbjct: 109 TELEREMMIFERDDKKVDKNLRDKFRSR 136
>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
polymerase-associated protein RTF1 homolog [Cucumis
sativus]
Length = 660
Score = 442 bits (1138), Expect = e-121
Identities = 231/410 (56%), Positives = 285/410 (69%), Gaps = 12/410 (2%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSDDER S+ PT+E IK +TIRRSKLAKW MEPFFEELIV CFVRVGIG
Sbjct: 255 GGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRS 314
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLC+V+NVDA+EP+++Y L+NK THKYLN +WG++ SAARWQMA VSDS P +E+
Sbjct: 315 GPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEY 374
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W KEVE++GGRM ++ EK+EAI K N+FVYSA VKQMLQ+KK SARP+NIAAE
Sbjct: 375 KQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDKKSASARPLNIAAE 434
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFRV 752
K++LRRE+++A + + AEVERI RL +LE +R+ Q KD KA++LAEMNRKNR ENF+
Sbjct: 435 KDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRLAEMNRKNRVENFKN 494
Query: 751 SSMRGAGRSLNPGDAGYDPFSRRWTRSTNYY------------SARQEDKAGKTAEEPPT 608
+S + L G+AGYDPFSRRWTRS NYY +A D E T
Sbjct: 495 ASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAGNSDNVTPALENTRT 554
Query: 607 NEGGVNDSKTSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPI 428
GG +D+ + + GKLVDTNAPVD GTESN LH+FELPI
Sbjct: 555 EAGGTSDAGMAAT-----------AAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELPI 603
Query: 427 SLTLLDSFGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
SL +L FGGA GA+ FLARKQ+IE+ +G QVP +DGR H +TL+V DY
Sbjct: 604 SLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDY 653
Score = 179 bits (455), Expect = 4e-42
Identities = 90/149 (60%), Positives = 119/149 (79%), Gaps = 2/149 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRT A+ RN+ SHPPS+ Q + SYSD GSDS+D+DSDD+ G+ASRK SG
Sbjct: 2 ADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDD GS + ++D S+ E SSD SDVG DLYKD++DR +L+ +
Sbjct: 62 SQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAGM 121
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSRL 1769
+EL+REMILSDRA+KK+D+ L++ +R+++
Sbjct: 122 SELQREMILSDRASKKNDKHLYESLRAKM 150
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 442 bits (1137), Expect = e-121
Identities = 230/403 (57%), Positives = 291/403 (72%), Gaps = 5/403 (1%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSDD+ + S PT++ I+ ITIRRSKLAKWFMEP+FEELIV CFVRVGIG
Sbjct: 255 GGMADSDDDGEPG-SQGPTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKS 313
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLC+V+NVDA++P++ Y L+NKTT+KYLN +WG++ SAARWQMA +SDS PT +E+
Sbjct: 314 GPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEY 373
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W +EVE+SGGRMP ++ EK+EAI K+N+FVYSA VKQMLQEKK S+RP+N+AAE
Sbjct: 374 KQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAE 433
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELE+A+ + + AEVERI R+ ELE +RQ+Q KD KA++LAEMNRKNRAENFR
Sbjct: 434 KDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENFRN 493
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEG----GVND 587
S ++ SL G+AGYDPFSRRWTRS NYY ++ AG A NE V +
Sbjct: 494 ASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSK---PAGGDAAAATNNEASGTVAVAN 550
Query: 586 SKTSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDS 407
S + GKLVDT APVD+GTESN LH+FELPISLT L
Sbjct: 551 KTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQK 610
Query: 406 FGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
FGGA GA+ F+ARKQ+IE+ IGC+V +D + H++TL+V DY
Sbjct: 611 FGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDY 653
Score = 181 bits (458), Expect = 2e-42
Identities = 93/156 (59%), Positives = 121/156 (77%), Gaps = 2/156 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRTG S RN+ + PPS+ + + SYSD GSDS+D+DSDD+ G++SRK SG
Sbjct: 2 ADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPSG 61
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDDQGS + DG SD E SSD SDVG DLYK+E+DR +L+++
Sbjct: 62 SQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQM 121
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSRLINEKKTQ 1748
+ELEREMILS+RA KK D+ L +++RS+ +E+ T+
Sbjct: 122 SELEREMILSERADKKGDKNLTERIRSKRESERTTR 157
>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Citrus sinensis] gi|568867309|ref|XP_006486981.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Citrus sinensis]
Length = 643
Score = 440 bits (1131), Expect = e-120
Identities = 227/399 (56%), Positives = 280/399 (70%), Gaps = 1/399 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSDD+ S PTY+ IK ITIRRSKLAKWFMEPFFEELIV CFVRVGIG
Sbjct: 242 GGMADSDDD-GAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKN 300
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDA+EP++ Y L+N+TT KYLN WG++ SAARWQMA VSDSPP EEF
Sbjct: 301 GPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEF 360
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W +EVE++ GRMP +V EK+++I K N+FVYSA VKQMLQEKK S+RP+N+AAE
Sbjct: 361 KQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAE 420
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELE+A+ R + ++ERI RL ELE +R S+ KD KA++LAEMNRKNR ENF+
Sbjct: 421 KDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKAIRLAEMNRKNRVENFKN 480
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ SL G+AGYDPFSRRWTRS NYY ++ + + E ++ GV
Sbjct: 481 ASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGE---EVTAEANGDKNGVPGGANG 537
Query: 574 DSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
+ GKLVDTNAP+D GTESN+LHDFEL ISL L FGG
Sbjct: 538 EEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGP 597
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
G F+ARKQ+IE+ +GCQVP +DGR H +TL+VGDY
Sbjct: 598 QGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDY 636
Score = 128 bits (322), Expect = 1e-26
Identities = 77/148 (52%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN+LLEAAGRT ++ RN+ S SK + + SYS GSDS+D+DSDDN G+ SRK SG
Sbjct: 2 ADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYS--GSDSRDDDSDDNRGYGSRKPSG 59
Query: 2029 SQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKL 1856
SQVPLKKR RDDDQGS + G S+HE SS+ SD D+N ++
Sbjct: 60 SQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDSSNESD-------DDNH----GQM 108
Query: 1855 TELEREMILSDRAAKKDDRKLHKQMRSR 1772
TELEREM++ +R KK D+ L + RSR
Sbjct: 109 TELEREMMIFERDDKKVDKNLRDKFRSR 136
>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
gi|550327599|gb|EEE97240.2| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 664
Score = 439 bits (1128), Expect = e-120
Identities = 229/401 (57%), Positives = 282/401 (70%), Gaps = 3/401 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSD++ D S PTYE IK ITIRR+KLAKWFMEP+FEELI+ CFVRVGIG
Sbjct: 258 GGMADSDEDGDPG-SRGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKT 316
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
+YRLCMV+NVDA+EP+K Y L+NK+T+KYLN WG+D SAARWQMA VSDS PT EE+
Sbjct: 317 GPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVSDSAPTEEEY 376
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W +E E+ GGR+P ++ EK+EAI K+N+FVYSA VKQMLQEKK S+RP+N+AAE
Sbjct: 377 KQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAE 436
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELEIA+ R + AEVERI R+ ELE +RQ++ KD KAL+LAEMNRKNR ENFR
Sbjct: 437 KDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAKALRLAEMNRKNRVENFRN 496
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQE--DKAGKTAEEPPTNEGGVNDSK 581
S ++ L G+AGYDPFSRRWTRS NYY + D A + + V DS
Sbjct: 497 ASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEANDTAAVADSD 556
Query: 580 TSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFG 401
+ GKLVDT+APVD+GTESN +H+FEL ISL L F
Sbjct: 557 HVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQGTESNTMHNFELEISLIALQKFR 616
Query: 400 GAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
G GA F+ARKQ+IE+N+GCQV +DGR H +TL+VGDY
Sbjct: 617 GPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDY 657
Score = 174 bits (441), Expect = 2e-40
Identities = 91/157 (57%), Positives = 121/157 (77%), Gaps = 3/157 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQ-HKASYSDNGSDSKDEDSDDNHGHASRKIS 2033
ADLEN+LLEAAGRTG S RN+ S PPS+ + + SYSD GSDS+D+ SDD+ G+ASRK S
Sbjct: 2 ADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPS 61
Query: 2032 GSQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSK 1859
GSQVPLKKR + RDD+ GS + DG SD E SSD SD+G DLYKDE+DR++L++
Sbjct: 62 GSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLAQ 121
Query: 1858 LTELEREMILSDRAAKKDDRKLHKQMRSRLINEKKTQ 1748
++EL+RE+IL+DRA KK D+ L +++RS+ N+K T+
Sbjct: 122 MSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTR 158
>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
truncatula] gi|355500443|gb|AES81646.1| RNA
polymerase-associated protein RTF1-like protein [Medicago
truncatula]
Length = 624
Score = 438 bits (1127), Expect = e-120
Identities = 227/406 (55%), Positives = 293/406 (72%), Gaps = 8/406 (1%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G++D +DD+ F P++E I+ ITI RSKL KWFMEPFFEELIV CFVRVGIG
Sbjct: 227 GIIDSNDDKIMPGFEK-PSFEDIQDITIPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKT 285
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
IYRLCMV+NVDAS+P++ Y LDNKTT+KYLN VWG++ SAARWQMA VSDSPP EEF
Sbjct: 286 GPIYRLCMVKNVDASDPDRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEF 345
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W KEVE+SGGRM +V EK++A+ K N+FVYSA VKQML+EKK +S RP+N+AAE
Sbjct: 346 KQWVKEVERSGGRMLKRLDVVEKKQAMLKINNFVYSAATVKQMLEEKKSISRRPLNVAAE 405
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++L+RELEIA+ + +AA VE+I +L ELE++R+S+EKD KAL+L+EMNRKNR ENF+
Sbjct: 406 KDRLKRELEIAESKNDAAGVEKIQTKLQELEESRKSREKDAKALRLSEMNRKNRVENFKN 465
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSAR--QEDKAGKTAEEPPTNEGGVND-- 587
S ++ ++L G+AGYDPFSRRWTRS NYY+++ +E AG +GG N
Sbjct: 466 ASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSKPAEEATAGNNTSGGAVGDGGSNGIG 525
Query: 586 ---SKTSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTL 416
+ T+++ + KLVDT APVD+GTESNVLHDFELPISL +
Sbjct: 526 AGMAATTEALEAAAGAG--------------KLVDTRAPVDEGTESNVLHDFELPISLAM 571
Query: 415 LDSFGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
L FGGA G + F+A+KQ+IE +G +VP +DGR H +TL+V DY
Sbjct: 572 LQKFGGAKGVQAGFMAKKQRIEEVVGFRVPENDGRRHQLTLTVSDY 617
Score = 119 bits (297), Expect = 8e-24
Identities = 73/146 (50%), Positives = 92/146 (63%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADLEN LLEAAG NK S PPS K + D+G D ++DSDD+
Sbjct: 2 ADLENDLLEAAGI------NKHSLPPSS---KNQFFDSGVDDSEDDSDDD---------A 43
Query: 2029 SQVPLKKRSKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKLTE 1850
SQ KKR ++ DDD + D G G SD E SD SDVG DLYKDE+DR++LS++TE
Sbjct: 44 SQARHKKRGRDDDDDDDASDDDG---GSSDREVDRSDESDVGDDLYKDEDDRKKLSEMTE 100
Query: 1849 LEREMILSDRAAKKDDRKLHKQMRSR 1772
L+REMILSDRAAKKDD+ + ++ S+
Sbjct: 101 LQREMILSDRAAKKDDKDILSKIASK 126
>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 662
Score = 437 bits (1123), Expect = e-119
Identities = 227/401 (56%), Positives = 282/401 (70%), Gaps = 3/401 (0%)
Frame = -2
Query: 1471 GVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMKDG 1292
G M DSD++ + S PTYE IK ITIRR+KLAKWFMEP+FEELI+ CFVRVGIG
Sbjct: 256 GGMADSDEDVEPG-SKGPTYEDIKEITIRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKS 314
Query: 1291 RSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEF 1112
+YRLCMV+NVDA+EP+K Y L+NK+T+KYLN WG+D SAARWQMA VSDS PT EE+
Sbjct: 315 GPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDSGPTEEEY 374
Query: 1111 NEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIAAE 932
+W +EVE GGR+P ++ EK+EAI K+N+FVYSA VKQMLQEKK S+RP+N+AAE
Sbjct: 375 KQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAE 434
Query: 931 KEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENFR- 755
K++LRRELEIA+ + + AEVERIN R+ ELE +R ++ KD KA++LAEMNRKNR ENFR
Sbjct: 435 KDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDAKAIRLAEMNRKNRVENFRN 494
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSAR--QEDKAGKTAEEPPTNEGGVNDSK 581
S M+ L G+AGYDPFSRRWTRS NYY ++ + D T V S
Sbjct: 495 ASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDPVATKISEANETVAVAASN 554
Query: 580 TSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFG 401
+ GKLVDT+APVD+GTESN +H FEL ISL L FG
Sbjct: 555 QVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTESNTMHSFELEISLIALQEFG 614
Query: 400 GAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
G GA+ F+ARKQ+IE+ +GC+VP +DGR H +TL+VGDY
Sbjct: 615 GPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDY 655
Score = 165 bits (417), Expect = 1e-37
Identities = 87/157 (55%), Positives = 119/157 (75%), Gaps = 3/157 (1%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHK-ASYSDNGSDSKDEDSDDNHGHASRKIS 2033
ADLEN+LLEAAGRTG S RN+ S PS+ + + SYSD GSDS+D+DSDD+ G+A+RK S
Sbjct: 2 ADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKPS 61
Query: 2032 GSQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSK 1859
GSQVPLKKR + RD ++GS + G SD E SSD SD+G DLYKDE+DR++L++
Sbjct: 62 GSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLAQ 121
Query: 1858 LTELEREMILSDRAAKKDDRKLHKQMRSRLINEKKTQ 1748
++EL+RE+IL+DRA KK D+ L +++R + N+K T+
Sbjct: 122 MSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTR 158
>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
gi|557088572|gb|ESQ29352.1| hypothetical protein
EUTSA_v10023338mg [Eutrema salsugineum]
Length = 644
Score = 432 bits (1111), Expect = e-118
Identities = 219/404 (54%), Positives = 284/404 (70%), Gaps = 4/404 (0%)
Frame = -2
Query: 1477 TGGVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMK 1298
+ G M DSDD+R S++PT+E IK ITIRRSKLAKW MEPFFEELIV CFVRVGIG
Sbjct: 249 SNGGMVDSDDDR----SDVPTFEDIKDITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRS 304
Query: 1297 DGRSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLE 1118
IYRLCMV+NVDA++P+K Y L+NKTTHKYLNC+WG + SAARWQMA +SD P E
Sbjct: 305 KNGPIYRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESSAARWQMAMISDGYPLEE 364
Query: 1117 EFNEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIA 938
E+ +W +EVE++ GRMP ++ EK+EAI + NSFVYSAE VKQMLQEKK S RPMNIA
Sbjct: 365 EYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQMLQEKKSASVRPMNIA 424
Query: 937 AEKEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENF 758
AEK++LR+ELE+A+ + + A VERI ++ +LE +R+ +E D KALKLAEMN+KNRAENF
Sbjct: 425 AEKDRLRKELEVAQIKNDEAGVERIKAKIKQLEASREKKEVDKKALKLAEMNKKNRAENF 484
Query: 757 R-VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQE---DKAGKTAEEPPTNEGGVN 590
+ S ++ SL G+AGYDPFSRRWTRS+NYY+ +++ D A TN
Sbjct: 485 KNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEGGDTEATAAAAVETNGAAAG 544
Query: 589 DSKTSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLD 410
++ ++ GKL+DT AP+ +G E N+LH+FELP+SLT L
Sbjct: 545 ENGVEATE-----------AALEAAADAGKLIDTRAPIGQGAEHNLLHNFELPLSLTALQ 593
Query: 409 SFGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
+GG G + AF+ARKQ E+ +GC+V +DG+ H +TL+V DY
Sbjct: 594 KYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDY 637
Score = 156 bits (395), Expect = 3e-35
Identities = 80/150 (53%), Positives = 109/150 (72%)
Frame = -2
Query: 2206 DLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISGS 2027
DL+++LLEAAGRT A R++ SHPPS + + SYSD GSDS+D DSD+ G+ASRK SGS
Sbjct: 3 DLDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSRD-DSDEERGYASRKPSGS 61
Query: 2026 QVPLKKRSKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKLTEL 1847
QVPLKKR + +D+ + + G DG SD E SS+ SD G DLYK+E DR++L+ +TE
Sbjct: 62 QVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEF 121
Query: 1846 EREMILSDRAAKKDDRKLHKQMRSRLINEK 1757
+REMIL++RA KK D+ +++RS+ EK
Sbjct: 122 QREMILAERADKKGDKNFTEKLRSKREKEK 151
>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 657
Score = 428 bits (1100), Expect = e-117
Identities = 227/411 (55%), Positives = 285/411 (69%), Gaps = 12/411 (2%)
Frame = -2
Query: 1474 GGVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGM-K 1298
G DD+ D D+ + T+E IK ITIRRS+LAKW MEPFFEELIV C VRVGIG K
Sbjct: 249 GSSADDAIDSDDERGNQGLTFEDIKEITIRRSRLAKWLMEPFFEELIVGCCVRVGIGKTK 308
Query: 1297 DGRSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLE 1118
GR IYRLC V NVD+S+P+++Y L+NKTTHKYLN VWG++ SAARWQMA VSDS P E
Sbjct: 309 SGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNENSAARWQMAMVSDSLPLEE 368
Query: 1117 EFNEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIA 938
E+++W +EVE++GGR+P +V EK+EAI KTN+FVYSA+ VKQM+QEKK S+RP+NIA
Sbjct: 369 EYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTVKQMIQEKKSASSRPLNIA 428
Query: 937 AEKEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENF 758
EK++LRRELEIA+ + + AEVERI RL +LE +QSQ KD+KA++LAEMNRKNR +NF
Sbjct: 429 LEKDRLRRELEIAQSKHDDAEVERIKARLEQLEARQQSQGKDSKAVRLAEMNRKNRVDNF 488
Query: 757 R-VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDK----------AGKTAEEPP 611
+ S ++ L G+AGYDPFSRRWTRS NYY ++ +++ A AE
Sbjct: 489 KNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDEQKDDAEANAVAAESLAEVET 548
Query: 610 TNEGGVNDSKTSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELP 431
GGV + GKL+DT APVD+GT SN LH+FELP
Sbjct: 549 NGTGGVVAVRAG---------LEATAAALEAAAGAGKLIDTMAPVDQGTSSNPLHNFELP 599
Query: 430 ISLTLLDSFGGAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
ISL L FGG GA+ F+ARKQ+IE+ +G +VP DDGR H +TLSV DY
Sbjct: 600 ISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRHALTLSVSDY 650
Score = 155 bits (392), Expect = 8e-35
Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Frame = -2
Query: 2209 ADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISG 2030
ADL+++LLEAAGRT + R+++ SH SK + SYSD GSDS+ +DSDD G+ASRK SG
Sbjct: 2 ADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPSG 61
Query: 2029 SQVPLKKR-SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKLT 1853
SQVPLKKR + D+ D G+ + S+ SDVGSDLYKDENDR +L++++
Sbjct: 62 SQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEMS 121
Query: 1852 ELEREMILSDRAAKKDDRKLHKQMRSRLINEKKTQ 1748
EL+RE+ILSDRA KKDD+ L ++ R + K TQ
Sbjct: 122 ELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQ 156
>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
gi|548857220|gb|ERN15034.1| hypothetical protein
AMTR_s00032p00242160 [Amborella trichopoda]
Length = 624
Score = 427 bits (1097), Expect = e-116
Identities = 228/399 (57%), Positives = 284/399 (71%), Gaps = 4/399 (1%)
Frame = -2
Query: 1462 DDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGM-KDGRS 1286
+ +DE + S PT+E IK ITIRRS+LAKWF+EPFFEE IV CFVRVGIG + G+S
Sbjct: 240 ESDEDEGPTSGSEHPTFEDIKGITIRRSRLAKWFLEPFFEEAIVGCFVRVGIGTSRSGQS 299
Query: 1285 IYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLEEFNE 1106
IYRLCMV+NVDAS+P+++Y +N+TTHKYLNCVWGS+ SAARWQMAR+SDS P +EF E
Sbjct: 300 IYRLCMVRNVDASDPDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLEKEFLE 359
Query: 1105 WKKEVEQSGGRMPHTNEVQEKEEAIGK-TNSFVYSAEAVKQMLQEKKLVSARPMNIAAEK 929
W +EVE+ GGRMP +V +K EAI + ++SFVYSA VKQMLQEKK S RP NIAAEK
Sbjct: 360 WVREVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNIAAEK 419
Query: 928 EKLRRELEIAKYRGEAAEVERINLRLNELEK-ARQSQEKDTKALKLAEMNRKNRAENFR- 755
++LR+E+E+A+ R + AE ER+ RL ELE ++QS++KD KA+ LAEMNR+NRAENF+
Sbjct: 420 DRLRKEMELAESRLDHAEAERVRARLQELENLSQQSKKKDAKAVMLAEMNRRNRAENFKN 479
Query: 754 VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSKTS 575
S ++ SL G+AGYDPFSRRWTRS NYY ++ E EE T +
Sbjct: 480 ASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPEGGGEVVKEEAETAATKAALEAAA 539
Query: 574 DSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFGGA 395
D+ GKLVDT APVD+GTES+ LHDFELPISL L FGG
Sbjct: 540 DA---------------------GKLVDTKAPVDEGTESHSLHDFELPISLAGLQRFGGP 578
Query: 394 YGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
GA+ AF+ARKQ+IE+ IG +VP +DGR H +TLSV DY
Sbjct: 579 QGAQLAFMARKQRIEATIGVRVPENDGRRHSLTLSVSDY 617
Score = 142 bits (358), Expect = 7e-31
Identities = 82/145 (56%), Positives = 102/145 (70%), Gaps = 6/145 (4%)
Frame = -2
Query: 2218 MSGADLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSD----SKDEDSDDNHGH 2051
MS DLE++LLEAAGRT S R K S K +H+ SYSD+GSD S+D+D D G+
Sbjct: 1 MSADDLEHLLLEAAGRTSTSGRKKPSQTQPKRRHEGSYSDDGSDPKYESEDDDDSDGPGY 60
Query: 2050 ASRKISGSQVPLKKR--SKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDEND 1877
SRK SGSQVPLKKR + ++DD +G G++DG SD S VGSDLYKDEND
Sbjct: 61 PSRKPSGSQVPLKKRFETADKDDMRGK----GDRDGGSDD---SDSGLSVGSDLYKDEND 113
Query: 1876 REELSKLTELEREMILSDRAAKKDD 1802
REELS++TELEREMIL+DRA ++D+
Sbjct: 114 REELSRMTELEREMILTDRADRRDN 138
>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
78902-80833 [Arabidopsis thaliana]
gi|332195649|gb|AEE33770.1| Paf1C-like transcription
factor [Arabidopsis thaliana]
Length = 643
Score = 424 bits (1089), Expect = e-115
Identities = 218/401 (54%), Positives = 282/401 (70%), Gaps = 1/401 (0%)
Frame = -2
Query: 1477 TGGVMDDSDDERDKTFSNIPTYEQIKRITIRRSKLAKWFMEPFFEELIVACFVRVGIGMK 1298
+ G M DSDD+R S++PT+E +K +TIRRSKLAKW MEPFFEELIV CFVRVGIG
Sbjct: 247 SNGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRS 302
Query: 1297 DGRSIYRLCMVQNVDASEPNKKYHLDNKTTHKYLNCVWGSDRSAARWQMARVSDSPPTLE 1118
IYRLC V+NVDA++P+K Y L+NKTTHKYLN VWG++ SAARWQMA +SD P E
Sbjct: 303 KSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQMAMISDGHPLEE 362
Query: 1117 EFNEWKKEVEQSGGRMPHTNEVQEKEEAIGKTNSFVYSAEAVKQMLQEKKLVSARPMNIA 938
E+ +W +EVE++ GRMP ++ EK+EAI +TNSFVYSAE VKQMLQEKK S RPMN+A
Sbjct: 363 EYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEKKSASVRPMNVA 422
Query: 937 AEKEKLRRELEIAKYRGEAAEVERINLRLNELEKARQSQEKDTKALKLAEMNRKNRAENF 758
AEK++LR+ELEIA+ + + A VERI ++ +L+ +R + D KALKLAEMN+KNRAENF
Sbjct: 423 AEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLAEMNKKNRAENF 482
Query: 757 R-VSSMRGAGRSLNPGDAGYDPFSRRWTRSTNYYSARQEDKAGKTAEEPPTNEGGVNDSK 581
+ S ++ SL G+AGYDPFSRRWTRS+NYY+ + + GK EE NE V +
Sbjct: 483 KNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNK---GKDGEE---NEAAVAAAV 536
Query: 580 TSDSKDXXXXXXXXXXXXXXXXXXXGKLVDTNAPVDKGTESNVLHDFELPISLTLLDSFG 401
++ D GKL+DT AP+ +G E N LH+FEL +SLT L +G
Sbjct: 537 ETNGAD-AGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLTALQKYG 595
Query: 400 GAYGARPAFLARKQKIESNIGCQVPVDDGRPHLMTLSVGDY 278
G G + AF+ARKQ E+ +GC+V +DG+ H +TL+V DY
Sbjct: 596 GPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDY 636
Score = 154 bits (389), Expect = 2e-34
Identities = 81/150 (54%), Positives = 111/150 (74%)
Frame = -2
Query: 2206 DLENMLLEAAGRTGASRRNKQSHPPSKMQHKASYSDNGSDSKDEDSDDNHGHASRKISGS 2027
DLEN+LLEAAGRT ++ R++ HPPS + + SYSD SDS+D DSD++ G+ASRK SGS
Sbjct: 3 DLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSRD-DSDEDRGYASRKPSGS 59
Query: 2026 QVPLKKRSKNRDDDQGSDVDMGNKDGESDHEAYSSDYSDVGSDLYKDENDREELSKLTEL 1847
QVPLKKR + +D+ + V+ G DG SD E SS+ SD G DLYK+E DR++L+ +TE
Sbjct: 60 QVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTEF 119
Query: 1846 EREMILSDRAAKKDDRKLHKQMRSRLINEK 1757
+REMILS+RA KK D+ +++RS+ +EK
Sbjct: 120 QREMILSERADKKGDKNFTEKLRSKRESEK 149