BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00010216
         (1175 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 499   e-138
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 497   e-138
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   487   e-135
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   471   e-130
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati...   469   e-129
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-...   469   e-129
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   468   e-129
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        467   e-129
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       464   e-128
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         462   e-127
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   462   e-127
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   461   e-127
emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group] gi...   457   e-126
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             457   e-126
ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752...   457   e-126
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                450   e-124
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]        450   e-124
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   449   e-123
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  447   e-123
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  444   e-122

>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  499 bits (1284), Expect = e-138
 Identities = 238/394 (60%), Positives = 295/394 (74%), Gaps = 3/394 (0%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGA-YHDEVLCDVIT-MDACHVLLGRPW 174
            L T  HP+PYKL WL +     V +QC+I FSIG  Y DEVLCDV+  MDACH+LLGRPW
Sbjct: 434  LPTQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPW 493

Query: 175  QTDRRSFHDGFANTYTITHKNRKLTLYPLPPQKEQAPQMTQVPQRTKEFLLTCREFEKQL 354
            + DR + H G  N Y   H+ +K+TL PLPP +          + +    L+     K++
Sbjct: 494  EYDRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQRDYGSPNVPEEMSGVLFLSEAAMIKEI 553

Query: 355  EEGEEVYLLYSKEWHETFIQKNPR-LAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPG 531
             + + V +L S+E ++      P  +A LI+ F++VFP+ELP  LPP+RGIEH IDL+PG
Sbjct: 554  RQAQPVLMLLSREVNQEENTVVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEHHIDLVPG 613

Query: 532  AQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSR 711
            + +PNKP YRC+P  TKELQ QIEEL+  G+VRES+SPCAVPAL+VPKKDG+WRMC DSR
Sbjct: 614  SVLPNKPAYRCDPNATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSR 673

Query: 712  AVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLY 891
            A+NNIT+KYRFPIPRLDDMLDELSGA +FSKIDLR GYHQ+R+REGDEWKT FKTKHGLY
Sbjct: 674  AINNITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLY 733

Query: 892  EWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTL 1071
            EW+VMPFGL+NAPSTFMRLM E+LRP +GKF VVY DDIL+YS  +  H  HL  VF+ L
Sbjct: 734  EWLVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKIL 793

Query: 1072 RKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            R+ KL+GKLEKC F++ EV FLG++ISG G+ VD
Sbjct: 794  REQKLYGKLEKCTFMVEEVAFLGYLISGRGISVD 827


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  497 bits (1280), Expect = e-138
 Identities = 239/393 (60%), Positives = 299/393 (76%), Gaps = 2/393 (0%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGA-YHDEVLCDVITMDACHVLLGRPWQ 177
            L T  HP PYKL WL++     V +QCL+ FSIG  Y DE LCDV+ MDACH+LLGRPW+
Sbjct: 423  LPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWE 482

Query: 178  TDRRSFHDGFANTYTITHKNRKLTLYPLPPQKEQAPQMTQVPQRTKEFLLTCREFEKQLE 357
             DR S H G  NTYT   ++RK+ L PLPP  +     + +    +  L+   E  ++L+
Sbjct: 483  FDRDSVHHGRDNTYTFKFRSRKVILTPLPPVLKHTTPPSMLEPSKEVLLINEAEMLQELK 542

Query: 358  EGEEVYLLYSKEW-HETFIQKNPRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGA 534
              E+VY L +K+      +     + EL++ +EDVFP ELP  LPP+RGIEHQID IPGA
Sbjct: 543  GDEDVYALIAKDVVFGQNVSLPKEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGA 602

Query: 535  QVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRA 714
             +PNK  YR +P  T+ELQ+QI EL++ G+VRES+SPC+VPAL+VPKKDGSWRMC DSRA
Sbjct: 603  TLPNKAAYRSDPKATQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRA 662

Query: 715  VNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYE 894
            +NNITIKYRFPIPRLDD+LDELSGA++FSKIDLR GYHQ+R++EGDEWKT FKTKHGLYE
Sbjct: 663  INNITIKYRFPIPRLDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYE 722

Query: 895  WMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLR 1074
            W+VMPFGL+NAPSTFMRLM E+LRPY+G+FVVVY DDIL+YS  +  H  HL+ +F+TLR
Sbjct: 723  WLVMPFGLSNAPSTFMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLR 782

Query: 1075 KNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            ++KL+GKLEKC+F+  EV FLGFIIS  G+ VD
Sbjct: 783  EHKLYGKLEKCSFMQNEVQFLGFIISDRGILVD 815


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  487 bits (1254), Expect = e-135
 Identities = 244/434 (56%), Positives = 295/434 (67%), Gaps = 43/434 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            + T +HP PYKL WL+      V +Q LI  SIG Y D+VLCDVI M ACH+LLGRPWQ 
Sbjct: 439  IPTIQHPQPYKLQWLNDDGELKVHKQALISISIGKYQDDVLCDVIPMHACHILLGRPWQY 498

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQ--------------------KEQAPQMTQV 300
            DR + H G  N YTI    +K TL PL P+                    KE   + T  
Sbjct: 499  DRDTLHHGKTNKYTIHKGGKKYTLTPLAPKEVYNLQVQSKKLREELAQKAKEAMKETTSG 558

Query: 301  PQRT--------------------KEFLLTCREFEKQLEEGEEVYLLYSKEWHETFIQKN 420
             Q T                       L+T RE E+ L  GE V+LLY  ++    I+  
Sbjct: 559  KQNTIAHEKKQRKEGMKKDTTQSSHNLLMTKREVEQALRRGEGVFLLYPIDFCLNVIKSE 618

Query: 421  ---PRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQ 591
                 ++ L+ EF DVFPEELP  LPPIRGIEHQIDLIPGA +PN+P YR NP E KE+Q
Sbjct: 619  IIPSDVSALLSEFADVFPEELPKGLPPIRGIEHQIDLIPGASLPNRPAYRTNPDEAKEIQ 678

Query: 592  RQIEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDML 771
            RQ++EL+  G+++ES+SPCAVP L+VPKKDG+WRMC+D RA+NNIT+KYR+PIPRLDDML
Sbjct: 679  RQVDELLQAGFIQESLSPCAVPVLLVPKKDGTWRMCVDCRAINNITVKYRYPIPRLDDML 738

Query: 772  DELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLM 951
            DEL GAK+FSKIDLR GYHQIRM++GDEWKT FKTK+GLYEW+VMPFGLTNAPSTFMRLM
Sbjct: 739  DELHGAKIFSKIDLRRGYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMRLM 798

Query: 952  NEILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVT 1131
            N +LR +IGKFVVVY DDILIYS D   H +HL+EVF  LR+ +L+  LEKC F +  V 
Sbjct: 799  NHVLRNFIGKFVVVYFDDILIYSKDPQKHIIHLKEVFLVLRREQLYANLEKCYFGVESVV 858

Query: 1132 FLGFIISGDGVKVD 1173
            FLGFI+S  G++VD
Sbjct: 859  FLGFIVSSKGIEVD 872


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  471 bits (1212), Expect = e-130
 Identities = 230/416 (55%), Positives = 291/416 (69%), Gaps = 25/416 (6%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 514  LSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 573

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQK-----------------EQAPQMTQVPQ- 306
            DR S H G +N Y+  + ++K+ L+ + P+                  ++A    + P+ 
Sbjct: 574  DRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPET 633

Query: 307  ---RTKEFLLTCREFEKQLEEGEEVYLLYSKE----WHETFIQKNPRLAELIKEFEDVFP 465
               + K  L T  +  + +      Y L  K+     H+      P +A +++E+ DVFP
Sbjct: 634  INLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFP 693

Query: 466  EELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSP 645
            +E+P  LPP+RGIEHQIDLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SP
Sbjct: 694  KEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSP 753

Query: 646  CAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGY 825
            CAVP ++VPKKDGSWRMC+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK+DLRSGY
Sbjct: 754  CAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGY 813

Query: 826  HQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDD 1005
            HQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMNE+LRP+IGKFVVVY DD
Sbjct: 814  HQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDD 873

Query: 1006 ILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            ILIYS     HF HLR VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 874  ILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 929



 Score =  115 bits (289), Expect = 3e-23
 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
 Frame = +1

Query: 823  YHQIRMREGDEWKTTFK--TKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVY 996
            +H+     GD+  T       +GLYE+ VM FGLTNAP+ FM LMN++   Y+ KFVVV+
Sbjct: 1603 HHKFAATIGDDRATNPSGFASYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVF 1662

Query: 997  LDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            +DDIL+YS  E  H  HLR V   LR+++L+ KL KC F L EV FLG +IS  GV VD
Sbjct: 1663 IDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVD 1721


>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
          Length = 1739

 Score =  469 bits (1206), Expect = e-129
 Identities = 227/399 (56%), Positives = 285/399 (71%), Gaps = 8/399 (2%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 872  LSTKPHPHPYYIQWLNNSGKVKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 931

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQKEQAPQMTQVPQRTKEFLLTCREFEKQLEE 360
            DR S H G +N Y+  + ++K+ L+P+  +      + +  +        C   +K   +
Sbjct: 932  DRDSMHHGRSNQYSFLYHDKKIVLHPMSSEDILRDDVAKAAKSK------CESDKKAQSD 985

Query: 361  GEEVYLLYSKEWHETFIQKNPRLAELIK--------EFEDVFPEELPHELPPIRGIEHQI 516
            G++   +  K   +  +     + ELI         E+ DVFP+E+P  LPP+RGIEHQI
Sbjct: 986  GKKPETINLKP--KCLLATKSDITELIASPSVAYALEYSDVFPKEVPPGLPPVRGIEHQI 1043

Query: 517  DLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSPCAVPALIVPKKDGSWRM 696
            DLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SPCAVP ++VPKKDGSWRM
Sbjct: 1044 DLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRM 1103

Query: 697  CIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKT 876
            C+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK+DLRSGYHQIRM+ GDEWKTTFKT
Sbjct: 1104 CVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKT 1163

Query: 877  KHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLRE 1056
            K GLYEW+VMPFGLTNAPSTFMRLMNE+LRP+IGKFVVVY DDILIYS     HF HLR 
Sbjct: 1164 KFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRA 1223

Query: 1057 VFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 1224 VFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 1262


>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|108864301|gb|ABA93040.2|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1748

 Score =  469 bits (1206), Expect = e-129
 Identities = 227/399 (56%), Positives = 285/399 (71%), Gaps = 8/399 (2%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 881  LSTKPHPHPYYIQWLNNSGKVKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 940

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQKEQAPQMTQVPQRTKEFLLTCREFEKQLEE 360
            DR S H G +N Y+  + ++K+ L+P+  +      + +  +        C   +K   +
Sbjct: 941  DRDSMHHGRSNQYSFLYHDKKIVLHPMSSEDILRDDVAKAAKSK------CESDKKAQSD 994

Query: 361  GEEVYLLYSKEWHETFIQKNPRLAELIK--------EFEDVFPEELPHELPPIRGIEHQI 516
            G++   +  K   +  +     + ELI         E+ DVFP+E+P  LPP+RGIEHQI
Sbjct: 995  GKKPETINLKP--KCLLATKSDITELIASPSVAYALEYSDVFPKEVPPGLPPVRGIEHQI 1052

Query: 517  DLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSPCAVPALIVPKKDGSWRM 696
            DLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SPCAVP ++VPKKDGSWRM
Sbjct: 1053 DLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRM 1112

Query: 697  CIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKT 876
            C+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK+DLRSGYHQIRM+ GDEWKTTFKT
Sbjct: 1113 CVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKT 1172

Query: 877  KHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLRE 1056
            K GLYEW+VMPFGLTNAPSTFMRLMNE+LRP+IGKFVVVY DDILIYS     HF HLR 
Sbjct: 1173 KFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRA 1232

Query: 1057 VFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 1233 VFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 1271


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  468 bits (1203), Expect = e-129
 Identities = 228/416 (54%), Positives = 290/416 (69%), Gaps = 25/416 (6%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPH Y + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 493  LSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 552

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQK-----------------EQAPQMTQVPQ- 306
            DR S H G +N Y+  + ++K+ L+P+ P+                  ++A    + P+ 
Sbjct: 553  DRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPET 612

Query: 307  ---RTKEFLLTCREFEKQLEEGEEVYLLYSKE----WHETFIQKNPRLAELIKEFEDVFP 465
               + K  L T  +  + +      Y L  K+     H+      P +A +++E+ DVFP
Sbjct: 613  INLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFP 672

Query: 466  EELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSP 645
            +E+P  LPP+RGIEHQIDLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SP
Sbjct: 673  KEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSP 732

Query: 646  CAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGY 825
            CAVP ++VPKKDGSWRMC+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK++LRSGY
Sbjct: 733  CAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVELRSGY 792

Query: 826  HQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDD 1005
            HQI M+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMNE+LRP+IGKFVVVY DD
Sbjct: 793  HQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDD 852

Query: 1006 ILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            ILIYS     HF HLR VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 853  ILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 908


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  467 bits (1202), Expect = e-129
 Identities = 228/416 (54%), Positives = 291/416 (69%), Gaps = 25/416 (6%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 608  LSTKPHPHPYCIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 667

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQK-----------------EQAPQMTQVPQ- 306
            DR S H G +N Y+  + ++K+ L+P+ P+                  ++A    + P+ 
Sbjct: 668  DRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPET 727

Query: 307  ---RTKEFLLTCREFEKQLEEGEEVYLLYSKE----WHETFIQKNPRLAELIKEFEDVFP 465
               + +  L T  +  + +      Y L  K+     H+      P +A +++E+ DVFP
Sbjct: 728  INLKPRYLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFP 787

Query: 466  EELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSP 645
            +E+P  LP +RGIEHQIDLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SP
Sbjct: 788  KEVPPGLPLVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSP 847

Query: 646  CAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGY 825
            CAVP ++VPKKDGSWRMC+D RA+NN TI+YR PIPRLDDMLDELSG+ VFSK+DLRSGY
Sbjct: 848  CAVPVILVPKKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGY 907

Query: 826  HQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDD 1005
            HQIRM+ GDEWKTTFKTK GLYEW+VMPFGLTNAPSTFMRLMNE+LRP+IGKFVVVY DD
Sbjct: 908  HQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDD 967

Query: 1006 ILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            ILIYS     HF HLR VF  LR  +LFG L+KC F    V+FLG++++  G++VD
Sbjct: 968  ILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSFLGYVVTPQGIEVD 1023



 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 17/258 (6%)
 Frame = +1

Query: 451  EDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMET----KELQRQIEELINM 618
            ED  P+ +  E  P   ++     +P  + P +PP    P+        L   IE L+ +
Sbjct: 1874 EDEVPDFIKEEADPGETLD-----LPIMEPPPRPPLELKPLSPGLRYAFLHNDIEALVII 1928

Query: 619  GYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIP-----------RLDD 765
                       +  ++   +        D R +N     +  PI            RL++
Sbjct: 1929 SDKLSEDETQRLLTVLEKHRSVLGYSLQDLRGINPALCTHHIPIDPESTPSREPQRRLNN 1988

Query: 766  MLDELSGAKVFSKID--LRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTF 939
             + +    +V   +   L   YH       D+ KTTF   +G Y +  M FGL NAP++F
Sbjct: 1989 TMRDAVKKEVLKLLHAGLSIPYHT------DQSKTTFTCPYGTYAYRRMSFGLCNAPASF 2042

Query: 940  MRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLL 1119
             R M  I    I   + +++DD  +Y         +L +V Q  ++  L    EKC+F++
Sbjct: 2043 QRCMMSIFSDMIEDIMEIFMDDFSVYGKTFGHCLQNLDKVLQRCQEKDLVLNWEKCHFMV 2102

Query: 1120 LEVTFLGFIISGDGVKVD 1173
             E   LG  +S  G++ D
Sbjct: 2103 REGIVLGHRVSERGIEFD 2120


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  464 bits (1195), Expect = e-128
 Identities = 233/433 (53%), Positives = 290/433 (66%), Gaps = 42/433 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HP PY + WL+ S    V R   + F+IG+YHD + CDV+ M AC +LLGRPWQ 
Sbjct: 525  LSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQF 584

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPP------QKEQAPQMTQVPQRTKEFLLTCREF 342
            D+ S H G +N Y+  H  +KL L+P+ P      +  +A +         E L+   E 
Sbjct: 585  DKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANEL 644

Query: 343  EKQLEEG-------------------------EEV-------YLLYSKEW----HETFIQ 414
            EK  ++                          +EV       Y L  KE      +T I 
Sbjct: 645  EKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPIS 704

Query: 415  KNPRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQR 594
              P +  L++E+ D+FP+E+P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+QR
Sbjct: 705  LRPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 764

Query: 595  QIEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLD 774
            Q++EL++ GYVRES+SPC+VP L+VPKKDGSWRMC+D RA+NNITI+YR PIPRLDDMLD
Sbjct: 765  QVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLD 824

Query: 775  ELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMN 954
            ELSG+ VFSKIDLRSGYHQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMN
Sbjct: 825  ELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMN 884

Query: 955  EILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTF 1134
            E+LR +IG+FVVVY DDILIYS     H  HLR VF  LR  +LFG LEKC F    V+F
Sbjct: 885  EVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSF 944

Query: 1135 LGFIISGDGVKVD 1173
            LG++++  G++VD
Sbjct: 945  LGYVVTPQGIEVD 957


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  462 bits (1189), Expect = e-127
 Identities = 223/416 (53%), Positives = 285/416 (68%), Gaps = 25/416 (6%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            LTT  HPHPY + WL+ S    V +   I F+IG+Y D V CDV+ MDAC++LLGRPWQ 
Sbjct: 517  LTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPWQF 576

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQ---KEQAPQMTQVPQRTKEFLLTCREFEKQ 351
            D    H G +N Y++ H ++K+ L P+ P+   ++   + T+      + +      +  
Sbjct: 577  DSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRDDVAKATKAKTENNKNIKVVGNNKDG 636

Query: 352  LEEGEEVYLLYSKEWHETFIQKN----------------------PRLAELIKEFEDVFP 465
            ++      L    + +E F                          P +  +++E+ DVFP
Sbjct: 637  IKLKGHCLLATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFP 696

Query: 466  EELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSP 645
             E+P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+QRQ++EL++ GYVRES+SP
Sbjct: 697  SEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSP 756

Query: 646  CAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGY 825
            CAVP ++VPKKDG+WRMC+D RA+NNITI+YR PIPRLDDMLDELSGA VFSK+DLRSGY
Sbjct: 757  CAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGY 816

Query: 826  HQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDD 1005
            HQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMNE+LR +IGKFVVVY DD
Sbjct: 817  HQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDD 876

Query: 1006 ILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            ILIYS   + H  H+R VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 877  ILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 932


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  462 bits (1188), Expect = e-127
 Identities = 230/433 (53%), Positives = 289/433 (66%), Gaps = 42/433 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HP PY + WL+ S    V R   + F+IG+YHD + CDV+ M AC + LGRPWQ 
Sbjct: 525  LSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSIFLGRPWQF 584

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPP------QKEQAPQMTQVPQRTKEFLLTCREF 342
            D+ S H G +N Y+  H  +KL L+P+ P      +  +A +         E L+   E 
Sbjct: 585  DKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANEL 644

Query: 343  EKQLEEG-------------------------EEV-------YLLYSKEW----HETFIQ 414
            EK  ++                          +EV       Y L  KE      +T I 
Sbjct: 645  EKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPIS 704

Query: 415  KNPRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQR 594
              P +  L++E+ D+FP+E+P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+QR
Sbjct: 705  LPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 764

Query: 595  QIEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLD 774
            Q++EL++ GYVRES+SPC++P L+VPKKDGSWRMC+D RA+NNITI+YR PIPRLDDMLD
Sbjct: 765  QVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLD 824

Query: 775  ELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMN 954
            ELSG+ VFSKIDLRSGYHQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTF+RLMN
Sbjct: 825  ELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMN 884

Query: 955  EILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTF 1134
            E+LR +IG+FVVVY DDILIYS     H  HLR VF  LR  +LFG LEKC F    V+F
Sbjct: 885  EVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSF 944

Query: 1135 LGFIISGDGVKVD 1173
            LG++++  G++VD
Sbjct: 945  LGYVVTPQGIEVD 957


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  461 bits (1187), Expect = e-127
 Identities = 232/433 (53%), Positives = 289/433 (66%), Gaps = 42/433 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HP PY + WL+ S    V R   + F+IG+YHD + CDV+ M AC +LLGRPWQ 
Sbjct: 525  LSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQF 584

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPP------QKEQAPQMTQVPQRTKEFLLTCREF 342
            D+ S H G +N Y+  H  +KL L+P+ P      +  +A +         E L+   E 
Sbjct: 585  DKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANEL 644

Query: 343  EKQLEEG-------------------------EEV-------YLLYSKEW----HETFIQ 414
            EK  ++                          +EV       Y L  KE      +T I 
Sbjct: 645  EKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPIS 704

Query: 415  KNPRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQR 594
              P +  L++E+ D+FP+E+P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+QR
Sbjct: 705  LPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQR 764

Query: 595  QIEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLD 774
            Q++EL++ GYVRES+SPC+VP L+VPKKDGSWRMC+D RA+NNITI+YR PIPRLDDMLD
Sbjct: 765  QVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLD 824

Query: 775  ELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMN 954
            ELSG+ VFSKIDLRSGYHQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMN
Sbjct: 825  ELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMN 884

Query: 955  EILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTF 1134
            E+LR +IG+FVVVY DDILIYS     H  HLR VF  LR  +LFG LEKC F    V+F
Sbjct: 885  EVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSF 944

Query: 1135 LGFIISGDGVKVD 1173
            L ++++  G++VD
Sbjct: 945  LSYVVTPQGIEVD 957


>emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
            gi|38345441|emb|CAE03293.2| OSJNBb0046P18.9 [Oryza sativa
            Japonica Group]
          Length = 1134

 Score =  457 bits (1177), Expect = e-126
 Identities = 224/416 (53%), Positives = 288/416 (69%), Gaps = 25/416 (6%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 697  LSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 756

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQK-----------------EQAPQMTQVPQ- 306
            D+ S H G +N Y+  + ++K+ L+P+  +                  ++A    + P+ 
Sbjct: 757  DKDSLHHGRSNQYSFLYHDKKIVLHPMSSEDILHDDVAKAAKSKCESDKKAQSDGKKPET 816

Query: 307  ---RTKEFLLTCREFEKQLEEGEEVYLLYSKE----WHETFIQKNPRLAELIKEFEDVFP 465
               + K  L T  +  + +      Y L  K+     H+      P +A +++E+ DVFP
Sbjct: 817  INLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAIANILQEYSDVFP 876

Query: 466  EELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSP 645
            +E+P  L P+ GIEHQIDLI GA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SP
Sbjct: 877  KEVPPGLLPVHGIEHQIDLILGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSP 936

Query: 646  CAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGY 825
            CAVP ++VPKKDGSWRMC+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK+DLRSGY
Sbjct: 937  CAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGY 996

Query: 826  HQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDD 1005
            HQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAP+TFMRLMNE+LRP+I KFVVVY DD
Sbjct: 997  HQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPNTFMRLMNEVLRPFIEKFVVVYFDD 1056

Query: 1006 ILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            ILIYS     HF HLR VF  LR  +LFG LEKC F +  V+FLG++++  G++VD
Sbjct: 1057 ILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCIDRVSFLGYVVTPQGIEVD 1112


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  457 bits (1177), Expect = e-126
 Identities = 229/420 (54%), Positives = 289/420 (68%), Gaps = 29/420 (6%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L T  HP PYKL WL+ S    V +Q  I F IG Y D VLCDV+ M+A H+LLGRPWQ 
Sbjct: 400  LETKPHPKPYKLQWLNESVEMLVNKQVEICFKIGKYEDVVLCDVVPMEASHLLLGRPWQF 459

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPP---QKEQAPQMTQVPQRTKE----------- 318
            DR++ HDG++N Y+  + ++K+ L PL P   +++Q     +  Q  KE           
Sbjct: 460  DRKANHDGYSNKYSFMYHDQKINLVPLNPSEVREDQRKMSEKYDQERKEKEKEKEKNEKK 519

Query: 319  ----------FLLTCREFEKQLEEGEEVYLLYSKEWHETFIQKNPR-----LAELIKEFE 453
                       +   R+ ++ +   + +YLL+ KE        N +     +  L++EF+
Sbjct: 520  KNDKREKKQSLIAKIRDVKEAIVSHQPLYLLFCKEVPLLTTISNEKKLPNCIESLLQEFK 579

Query: 454  DVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRE 633
            ++FPEE+P  LPPIRGIEH IDL PGA +PN+P YR NP +T+E+QRQ+ ELI+ G+VRE
Sbjct: 580  ELFPEEVPSGLPPIRGIEHHIDLNPGASLPNRPAYRSNPQQTQEIQRQVAELISKGWVRE 639

Query: 634  SMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDL 813
            S+SPCAVP ++VPKKDGSWRMC D RA++NITIKYR PIPRLDD+LDEL GA +FSKIDL
Sbjct: 640  SLSPCAVPIILVPKKDGSWRMCTDCRAISNITIKYRHPIPRLDDLLDELFGACLFSKIDL 699

Query: 814  RSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVV 993
            +SGYHQIR+REGDEWKT FKTK GLYEWMVMPFGLTNAPSTFMRLMN +LR ++GKFVVV
Sbjct: 700  KSGYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLREFLGKFVVV 759

Query: 994  YLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            Y DDILIYS + + H +HL+ V Q LR   L+  LEKC F    V FLGFI+S  GV VD
Sbjct: 760  YFDDILIYSKNLDDHCIHLKAVLQVLRYENLYANLEKCVFCTDHVIFLGFIVSSKGVHVD 819


>ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752491 [Setaria italica]
          Length = 1295

 Score =  457 bits (1176), Expect = e-126
 Identities = 223/421 (52%), Positives = 289/421 (68%), Gaps = 30/421 (7%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L   RHPHPY + WL+ S +  V     + FSIG YH EV CD++ M ACH+LLGRPWQ 
Sbjct: 578  LQPRRHPHPYHMQWLNNSGTVKVSAMIRLTFSIGDYHGEVDCDIVPMQACHLLLGRPWQF 637

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQK-------------------EQAPQMTQVP 303
            D  S H G +N YT    ++K+ L PL P++                    +AP  ++  
Sbjct: 638  DVDSVHFGRSNKYTFIANDKKVVLVPLSPEEIHASDVARMKREESEKRKLSEAPNTSKGE 697

Query: 304  QRTKEFLLTCREFEKQLEEGEEVYLLYSKEW---HETFIQKNPRLA--------ELIKEF 450
              T    +      KQL + E +++  +  +   H+  +     L+        +L+++F
Sbjct: 698  TPTPSSHIKPHSTSKQLRQNECLFVSRTPFFVLLHKEVLLSTTDLSSSLPSVVLDLLQDF 757

Query: 451  EDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVR 630
            +DVFP+E+P  LPP+RGIEHQIDL+PGA +PN+P YR NP ETKE+Q+Q++EL++ GYVR
Sbjct: 758  KDVFPDEVPAGLPPLRGIEHQIDLVPGASLPNRPAYRTNPEETKEIQQQVKELLDKGYVR 817

Query: 631  ESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKID 810
            ES+SPCAVP L+VPKKDGSWRMC+D RA+N IT++YR PIPRLDDMLDELSG+ +F+KID
Sbjct: 818  ESLSPCAVPVLLVPKKDGSWRMCVDCRAINAITVRYRHPIPRLDDMLDELSGSTIFTKID 877

Query: 811  LRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVV 990
            LRSGYHQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMN +LR +IGKFVV
Sbjct: 878  LRSGYHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVV 937

Query: 991  VYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKV 1170
            VY DDILIYS   + H  H+R+V   LR +KL+G + KC F    V FLGF++S DG++V
Sbjct: 938  VYFDDILIYSKSFDEHLDHIRQVLSVLRDDKLYGNIAKCTFCTDHVVFLGFVVSADGIQV 997

Query: 1171 D 1173
            D
Sbjct: 998  D 998


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  450 bits (1158), Expect = e-124
 Identities = 223/399 (55%), Positives = 277/399 (69%), Gaps = 8/399 (2%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 473  LSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 532

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQKEQAPQMTQVPQRTKEFLLTCREFEKQLEE 360
            DR S H G           +K+ L+P+ P+      + +  +        C   +K   +
Sbjct: 533  DRDSMHHG-----------KKIVLHPMSPEDILRDDVAKAAKSK------CESDKKAQSD 575

Query: 361  GEEVYLLYSKEWHETFIQKNPRLAELIK--------EFEDVFPEELPHELPPIRGIEHQI 516
            G++   +  K   +  +     + ELI         E+ DVFP+E+P  LPP+RGIEHQI
Sbjct: 576  GKKPETINLKP--KCLLATKSDINELIASPSVAYALEYSDVFPKEVPPGLPPVRGIEHQI 633

Query: 517  DLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSPCAVPALIVPKKDGSWRM 696
            DLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SPCAV  ++VPKKDGSWRM
Sbjct: 634  DLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVLVILVPKKDGSWRM 693

Query: 697  CIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKT 876
            C+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK+DLRSGYHQIRM  GDEWKT FKT
Sbjct: 694  CVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMNLGDEWKTAFKT 753

Query: 877  KHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLRE 1056
            K GLYEW+VMPFGLTNAP+TFMRLMNE+LRP+IGKFVVVY DDILIYS     HF HLR 
Sbjct: 754  KFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRA 813

Query: 1057 VFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 814  VFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 852


>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
          Length = 1667

 Score =  450 bits (1158), Expect = e-124
 Identities = 223/399 (55%), Positives = 277/399 (69%), Gaps = 8/399 (2%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L+T  HPHPY + WL+ S    V +   I F+IG YHD V CDV+ M AC++LLGRPWQ 
Sbjct: 473  LSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQF 532

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQKEQAPQMTQVPQRTKEFLLTCREFEKQLEE 360
            DR S H G           +K+ L+P+ P+      + +  +        C   +K   +
Sbjct: 533  DRDSMHHG-----------KKIVLHPMSPEDILRDDVAKAAKSK------CESDKKAQSD 575

Query: 361  GEEVYLLYSKEWHETFIQKNPRLAELIK--------EFEDVFPEELPHELPPIRGIEHQI 516
            G++   +  K   +  +     + ELI         E+ DVFP+E+P  LPP+RGIEHQI
Sbjct: 576  GKKPETINLKP--KCLLATKSDINELIASPSVAYALEYSDVFPKEVPPGLPPVRGIEHQI 633

Query: 517  DLIPGAQVPNKPPYRCNPMETKELQRQIEELINMGYVRESMSPCAVPALIVPKKDGSWRM 696
            DLIPGA +PN+ PYR NP ETKE+QRQ+ EL++ GYVRES+SPCAV  ++VPKKDGSWRM
Sbjct: 634  DLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVLVILVPKKDGSWRM 693

Query: 697  CIDSRAVNNITIKYRFPIPRLDDMLDELSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKT 876
            C+D RA+NNITI+YR PIPRLDDMLDELSG+ VFSK+DLRSGYHQIRM  GDEWKT FKT
Sbjct: 694  CVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMNLGDEWKTAFKT 753

Query: 877  KHGLYEWMVMPFGLTNAPSTFMRLMNEILRPYIGKFVVVYLDDILIYSLDENTHFLHLRE 1056
            K GLYEW+VMPFGLTNAP+TFMRLMNE+LRP+IGKFVVVY DDILIYS     HF HLR 
Sbjct: 754  KFGLYEWLVMPFGLTNAPTTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRA 813

Query: 1057 VFQTLRKNKLFGKLEKCNFLLLEVTFLGFIISGDGVKVD 1173
            VF  LR  +LFG LEKC F    V+FLG++++  G++VD
Sbjct: 814  VFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVD 852


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  449 bits (1154), Expect = e-123
 Identities = 224/432 (51%), Positives = 284/432 (65%), Gaps = 41/432 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            L T  HPHPY + W + S    V R   + FSI  Y D V CDV+ M AC +LLGRPWQ 
Sbjct: 542  LITRPHPHPYYIQWFNNSGKVKVTRTVRVHFSISTYADYVDCDVVPMQACSLLLGRPWQF 601

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQ---KEQAPQMTQVPQ--RTKEFLLTCREFE 345
            D+ S H    N YT+ HK++ +TL P+ P+   K+   +  +  Q     E  +  +EFE
Sbjct: 602  DKNSVHHDRKNLYTLVHKDKNITLLPMTPESILKDDINRANKAKQEKNKSENQIVAKEFE 661

Query: 346  KQLEEGEEVY-----------------------LLYSKEWHETFIQKN------------ 420
            +Q++                             L +SK     F+ K             
Sbjct: 662  QQMQSNNNKQSSVACEIKLKSACLLATKSDIDDLDFSKSVCYAFVCKEALFSFEDVPSSL 721

Query: 421  -PRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQ 597
             P +  +++EF DVFP+++P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+ RQ
Sbjct: 722  PPAVTNILQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQ 781

Query: 598  IEELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDE 777
            ++EL++ GY+RES+SPCAVP ++VPKKDG+ RMC+D R +NNITI+YR PIPRLDDMLDE
Sbjct: 782  VQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDE 841

Query: 778  LSGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNE 957
            LSG+ +FSK+DLRSGYHQIRM+ GDEWKTTFKTK GLYEW+VMPFGLTNAPSTFMRLMNE
Sbjct: 842  LSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 901

Query: 958  ILRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFL 1137
            +LR +IG+FVVVY DDILIYS     H  HLR VF  LR  +LFG L KC F    V+FL
Sbjct: 902  VLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFL 961

Query: 1138 GFIISGDGVKVD 1173
            G++++  G++VD
Sbjct: 962  GYVVTPQGIEVD 973


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  447 bits (1149), Expect = e-123
 Identities = 225/431 (52%), Positives = 285/431 (66%), Gaps = 40/431 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            LTT  HPHPY + W + S    V R   + FSI  Y D V CDV+ M AC VLLGRPWQ 
Sbjct: 555  LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 614

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQ---KEQAPQMTQVPQ--RTKEFLLTCREFE 345
            D+ S H G  N YT+ HK++ +TL P+ P+   K+   + ++  Q     E  +  +EFE
Sbjct: 615  DKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARASKAKQDLHKSENQIVAKEFE 674

Query: 346  K---------------QLEEG----------------EEVYLLYSKE----WHETFIQKN 420
            +               +L+ G                   Y    KE    + +      
Sbjct: 675  QHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLP 734

Query: 421  PRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQI 600
            P +  +++EF DVFP+++P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+ RQ+
Sbjct: 735  PAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQV 794

Query: 601  EELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDEL 780
            +EL++ GY+RES+SPCAVP ++VPKKDG+ RMC+D R +NNITI+YR PIPRLDDMLDEL
Sbjct: 795  QELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDEL 854

Query: 781  SGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEI 960
            SG+ +FSK+DLRSGYHQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMNE+
Sbjct: 855  SGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEV 914

Query: 961  LRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLG 1140
            LR +IG+FVVVY DDILIYS     H  HLR VF  LR  +LFG L KC F    V+FLG
Sbjct: 915  LRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLG 974

Query: 1141 FIISGDGVKVD 1173
            ++++  G++VD
Sbjct: 975  YVVTPQGIEVD 985


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  444 bits (1141), Expect = e-122
 Identities = 224/431 (51%), Positives = 284/431 (65%), Gaps = 40/431 (9%)
 Frame = +1

Query: 1    LTTTRHPHPYKLSWLDRSKST*VRRQCLIGFSIGAYHDEVLCDVITMDACHVLLGRPWQT 180
            LTT  HPHPY + W + S    V R   + FSI  Y D V CDV+ M AC VLLGRPWQ 
Sbjct: 558  LTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATYSDFVDCDVVPMQACSVLLGRPWQF 617

Query: 181  DRRSFHDGFANTYTITHKNRKLTLYPLPPQ---KEQAPQMTQVPQ--RTKEFLLTCREFE 345
            D+ S H G  N YT+ HK++ +TL P+ P+   K+   + ++  Q     E  +  +EFE
Sbjct: 618  DKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARASKAKQDLHKSENQIVAKEFE 677

Query: 346  K---------------QLEEG----------------EEVYLLYSKE----WHETFIQKN 420
            +               +L+ G                   Y    KE    + +      
Sbjct: 678  QHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLP 737

Query: 421  PRLAELIKEFEDVFPEELPHELPPIRGIEHQIDLIPGAQVPNKPPYRCNPMETKELQRQI 600
            P +  +++EF DVFP+++P  LPPIRGIEHQIDLIPGA +PN+ PYR NP ETKE+ RQ+
Sbjct: 738  PAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQV 797

Query: 601  EELINMGYVRESMSPCAVPALIVPKKDGSWRMCIDSRAVNNITIKYRFPIPRLDDMLDEL 780
            +EL++ GY+RES+SPCAVP ++VPKKDG+ RMC+D R +NNITI+ R PIPRLDDMLDEL
Sbjct: 798  QELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRXRHPIPRLDDMLDEL 857

Query: 781  SGAKVFSKIDLRSGYHQIRMREGDEWKTTFKTKHGLYEWMVMPFGLTNAPSTFMRLMNEI 960
            SG+ +FSK+DLRSGYHQIRM+ GDEWKT FKTK GLYEW+VMPFGLTNAPSTFMRLMNE+
Sbjct: 858  SGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEV 917

Query: 961  LRPYIGKFVVVYLDDILIYSLDENTHFLHLREVFQTLRKNKLFGKLEKCNFLLLEVTFLG 1140
            LR +IG+FVVVY DDILIYS     H  HLR VF  LR  +LFG L KC F    V+FLG
Sbjct: 918  LRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLG 977

Query: 1141 FIISGDGVKVD 1173
            ++++  G++VD
Sbjct: 978  YVVTPQGIEVD 988