BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Achyranthes22_contig00008119
         (1422 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD20831.2| sigma factor [Spinacia oleracea]                      509   e-141
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   400   e-109
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   398   e-108
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              394   e-107
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   392   e-106
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        384   e-104
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     380   e-103
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   370   e-100
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   368   3e-99
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   367   7e-99
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   358   2e-96
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-...   352   2e-94
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   348   4e-93
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   344   5e-92
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   343   8e-92
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   343   1e-91
ref|XP_006307125.1| hypothetical protein CARUB_v10008711mg [Caps...   343   1e-91
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   342   2e-91
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   341   5e-91
ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Popu...   340   7e-91

>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  509 bits (1311), Expect = e-141
 Identities = 280/437 (64%), Positives = 319/437 (72%), Gaps = 3/437 (0%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXAD 1127
            MTCLLP  KCQPDTFSIS VLH           L R+RDLVCFRPQCAV         A+
Sbjct: 1    MTCLLPQFKCQPDTFSISSVLHPPSASSSATS-LLRNRDLVCFRPQCAVSTPPPPTAAAE 59

Query: 1126 TAI--LEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTARLFIE-DEAVITS 956
            T+I  +EKLRLPYVESNSN++ AF +S+ L+TLGSP+E KFDTALTA+L IE +EAVI +
Sbjct: 60   TSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQLGTQRYLE 776
                                    +SQ TKPVS+ EGQSL  +GA+LLE  Q+G+ R  E
Sbjct: 120  AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSGAQLLENEQVGSMRNFE 179

Query: 775  SAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXXX 596
             +  S+R+G    + VSE  DMEPT +          ESI VRSTRQG            
Sbjct: 180  GSENSLREG----DTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARAAEK 235

Query: 595  XAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLLK 416
             A NVV VK+ SNSR+KRT+VQ+VDYSDPLRYLRG T+SSR+LT+SEE E SAGIQDLLK
Sbjct: 236  VASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLK 295

Query: 415  LENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAKN 236
            LE LHDEL+ + G  PSF QWAAAAG+DQR LR+RLNHG  CKDKMIKSN+RLVISIAKN
Sbjct: 296  LEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKN 355

Query: 235  YQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 56
            YQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 356  YQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415

Query: 55   FHMVEATYKVKEARKQL 5
            FHMVEATY+VKEARKQL
Sbjct: 416  FHMVEATYRVKEARKQL 432


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  400 bits (1028), Expect = e-109
 Identities = 234/445 (52%), Positives = 279/445 (62%), Gaps = 10/445 (2%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSIS-RVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXA 1130
            M+CLLP  KCQPDTFSI  R LH             +S++ +CFR  C +         A
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPS---KSKEPICFRTHCVLSTTSPSTSTA 80

Query: 1129 DTAIL--EKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTARLFIEDEAVITS 956
             T +L  EKLRLP +E++SNA+ A  + +    +G  +E    T+L       DEAVI +
Sbjct: 81   MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQ-CEGQSLDSNGARLLEGGQLGTQRYL 779
                                       S KP S+     S D+N +      QL  +   
Sbjct: 141  ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMW---AQLTERERA 197

Query: 778  ESAGTSV------RKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXX 617
               G SV       + Y    P+++S D+EPT +          +SIAVRS RQ      
Sbjct: 198  SIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKAR 257

Query: 616  XXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSA 437
                    A NV+ VK  S SRRKR +VQ+VDYSDPLRYLR TTSSSR+LTA+EE++ SA
Sbjct: 258  RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317

Query: 436  GIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRL 257
            GIQDLLKLE L + L E+ GG P+FAQWAAAAGVDQR LR+RLN+G++CKDKMI SNIRL
Sbjct: 318  GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377

Query: 256  VISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQ 77
            VISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 378  VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437

Query: 76   SRTIRLPFHMVEATYKVKEARKQLY 2
            SRTIRLPFHMVEATY+VKEARKQLY
Sbjct: 438  SRTIRLPFHMVEATYRVKEARKQLY 462


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  398 bits (1023), Expect = e-108
 Identities = 232/445 (52%), Positives = 281/445 (63%), Gaps = 10/445 (2%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSIS-RVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXA 1130
            M+CLLP  KCQPDTFSI  R LH             +S++ +CFR  C +         A
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPS---KSKEPICFRTHCVLSTTSPSTSTA 80

Query: 1129 DTAIL--EKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTARLFIEDEAVITS 956
             T +L  EKLRLP +E++SNA+ A  + +    +G  +E    T+L       DEAVI +
Sbjct: 81   MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQ----CEGQSLDSNGARLLEGGQ---L 797
                                       S KP S+        +  S  A+L E  +   +
Sbjct: 141  ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTERERASII 200

Query: 796  GTQRYLESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXX 617
            G    +E+A     + Y    P+++S D+EPT +          +SIAVRS RQ      
Sbjct: 201  GDSVIVEAAP---EEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKAR 257

Query: 616  XXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSA 437
                    A NV+ VK  S +RRKR +VQ+VDYSDPLRYLR TTSSSR+LTA+EE++ SA
Sbjct: 258  RTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317

Query: 436  GIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRL 257
            GIQDLLKLE L + L E+ GG P+FAQWAAAAGVDQR LR+RLN+G++CKDKMI SNIRL
Sbjct: 318  GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377

Query: 256  VISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQ 77
            VISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 378  VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437

Query: 76   SRTIRLPFHMVEATYKVKEARKQLY 2
            SRTIRLPFHMVEATY+VKEARKQLY
Sbjct: 438  SRTIRLPFHMVEATYRVKEARKQLY 462


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  394 bits (1012), Expect = e-107
 Identities = 230/444 (51%), Positives = 281/444 (63%), Gaps = 9/444 (2%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXAD 1127
            M+CLLP  KC PDTFS    LH           L ++R+ + FR QCA+         + 
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHI----------LSKNREAIYFRVQCALSTTSPPLSTST 50

Query: 1126 TAIL--EKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITS 956
            TA+L  EKLRLP +ES+SN++ A    + +  +G P+EA F+  L    L   +EAVI +
Sbjct: 51   TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 110

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXASSQS----TKPVSQCEGQSLDS-NGARLLEGGQLGT 791
                                     + S    TKP S   G         +  E  ++G 
Sbjct: 111  AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 170

Query: 790  QRYLESAGTSVRKGYQTLNPVSE-SDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXX 614
                  A T +   Y +L  V+E SDD+EPT +          +SI VRS RQ       
Sbjct: 171  LGDSVGAETGM-VDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARR 229

Query: 613  XXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAG 434
                   +  VV V+  S SRRKR ++Q+VDYSDPLRYLRGTTS+SR+LTA+EELE S G
Sbjct: 230  ARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEG 289

Query: 433  IQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLV 254
            IQDLLKLE L ++L+E+ G +P+FAQWAAAAGVDQ+ LR+R N+G+ CKDKMIKSNIRLV
Sbjct: 290  IQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLV 349

Query: 253  ISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQS 74
            ISIAKNYQG GMN+QDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQS
Sbjct: 350  ISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 409

Query: 73   RTIRLPFHMVEATYKVKEARKQLY 2
            RTIRLPFHMVEATY+VKEARKQLY
Sbjct: 410  RTIRLPFHMVEATYRVKEARKQLY 433


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  392 bits (1008), Expect = e-106
 Identities = 229/444 (51%), Positives = 280/444 (63%), Gaps = 9/444 (2%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXAD 1127
            M+CLLP  KC PDTFS    LH             ++R+ + FR QCA+         + 
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILCKSP-------KNREAIYFRVQCALSTTSPPLSTST 53

Query: 1126 TAIL--EKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITS 956
            TA+L  EKLRLP +ES+SN++ A    + +  +G P+EA F+  L    L   +EAVI +
Sbjct: 54   TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 113

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXASSQS----TKPVSQCEGQSLDS-NGARLLEGGQLGT 791
                                     + S    TKP S   G         +  E  ++G 
Sbjct: 114  AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 173

Query: 790  QRYLESAGTSVRKGYQTLNPVSE-SDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXX 614
                  A T +   Y +L  V+E SDD+EPT +          +SI VRS RQ       
Sbjct: 174  LGDSVGAETGM-VDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARR 232

Query: 613  XXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAG 434
                   +  VV V+  S SRRKR ++Q+VDYSDPLRYLRGTTS+SR+LTA+EELE S G
Sbjct: 233  ARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEG 292

Query: 433  IQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLV 254
            IQDLLKLE L ++L+E+ G +P+FAQWAAAAGVDQ+ LR+R N+G+ CKDKMIKSNIRLV
Sbjct: 293  IQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLV 352

Query: 253  ISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQS 74
            ISIAKNYQG GMN+QDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQS
Sbjct: 353  ISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 412

Query: 73   RTIRLPFHMVEATYKVKEARKQLY 2
            RTIRLPFHMVEATY+VKEARKQLY
Sbjct: 413  RTIRLPFHMVEATYRVKEARKQLY 436


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  384 bits (986), Expect = e-104
 Identities = 230/470 (48%), Positives = 271/470 (57%), Gaps = 35/470 (7%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXS--------------------------- 1208
            M+CLLP  KCQPDTFSI    H                                      
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 1207 -LFRSRDLVCFRPQCAVXXXXXXXXXADTAIL--EKLRLPYVESNSNAIPAFVRSSCLTT 1037
             L + ++ +CFR QC +           TA+L  EKLRLP  E++ N++      + +  
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120

Query: 1036 LGSPSEAKFDTAL-TARLFIEDEAVITSXXXXXXXXXXXXXXXXXXXXXXXASSQSTKPV 860
             G PSEA     L T  L   DEAVI +                        +    K  
Sbjct: 121  TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180

Query: 859  SQC----EGQSLDSNGARLLEGGQLGTQRYLESAGTSVRKGYQTLNPVSESDDMEPTKDX 692
             +        S  S  A   E  + G      +  + + +     N  +ESD++EPT + 
Sbjct: 181  MKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEE 240

Query: 691  XXXXXXXXXESIAVRSTRQGXXXXXXXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSD 512
                      SIAVRS RQ              A NVV VK  S +R++R A+QDVDYSD
Sbjct: 241  LEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSD 300

Query: 511  PLRYLRGTTSSSRILTASEELEFSAGIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVD 332
            PLRYLRGTTS+SR+LTA+EELE S GIQDLLKLE L +EL E+ GG+P+FAQWAAAAGVD
Sbjct: 301  PLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVD 360

Query: 331  QRALRKRLNHGVMCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDA 152
            Q+ LR RLN+GV CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA
Sbjct: 361  QKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 420

Query: 151  TKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYKVKEARKQLY 2
            +KGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATY+VKEARKQLY
Sbjct: 421  SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 470


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  380 bits (976), Expect = e-103
 Identities = 221/439 (50%), Positives = 280/439 (63%), Gaps = 4/439 (0%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXAD 1127
            M+CLLP   C+PDTFS ++              L ++RD+     QC +           
Sbjct: 1    MSCLLPQFNCKPDTFS-AQFNFRTHSLPTPNSHLPKARDINSLA-QCVLSTTSPSTSVGA 58

Query: 1126 TAIL--EKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTAL-TARLFIEDEAVITS 956
            T +L  EKLR P +++NS ++ +    +     G P EA F+  L T  L   +EAVI +
Sbjct: 59   TYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAA 118

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQLGTQ-RYL 779
                                    ++   +P ++ E  SL S+ AR ++  Q  ++ R  
Sbjct: 119  AAAEAVTLAKAAVKVAKD------AALLVRPSTRAESISLVSSEARNIKTAQAASRVRDS 172

Query: 778  ESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXX 599
              A  ++ + +   +   ES+D++PT +          +SIAVRS RQ            
Sbjct: 173  LRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAE 232

Query: 598  XXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLL 419
              A NVV VK  SNSR+KR +VQDVD+SDPLRYLR TTS+SR+LTA+EE+E S GIQDLL
Sbjct: 233  KAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLL 292

Query: 418  KLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAK 239
            KLE L +EL E+ GG P+FAQWAAAAGVDQ+ LR+R+N+G++CKDKMIKSN+RLVISIAK
Sbjct: 293  KLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAK 352

Query: 238  NYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 59
            NYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 353  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 412

Query: 58   PFHMVEATYKVKEARKQLY 2
            PFHMVEATY+VKEARKQLY
Sbjct: 413  PFHMVEATYRVKEARKQLY 431


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  370 bits (950), Expect = e-100
 Identities = 226/440 (51%), Positives = 274/440 (62%), Gaps = 5/440 (1%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXAD 1127
            M+CLLP  KCQPDTFSI                  +SR+ + +R QC +           
Sbjct: 2    MSCLLPQFKCQPDTFSIH--FRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPST---S 56

Query: 1126 TAIL--EKLRLPYVESNSNAIPA---FVRSSCLTTLGSPSEAKFDTALTARLFIEDEAVI 962
            TA+L  EKLRLP  E+ S++I     +  ++  +TL + +    D A+ A    E  A+ 
Sbjct: 57   TAVLDLEKLRLPSFEAPSDSIAPNSPWTYATFGSTLATETLITSDEAVIAAAAAEAVALA 116

Query: 961  TSXXXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQLGTQRY 782
             +                        +S ST   S+   Q  ++  AR++ G  + T+  
Sbjct: 117  RAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWP-QFTETERARII-GDSVATE-- 172

Query: 781  LESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXX 602
                 T  R+     + + ESD +E T            E IAVRS RQ           
Sbjct: 173  -----TGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227

Query: 601  XXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDL 422
               A +VV VK  S S++KR ++Q+VDYSDPLRYLRGTTS+SR+LTASEELE SA IQDL
Sbjct: 228  EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287

Query: 421  LKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIA 242
            LKLE L +EL E+ GG+P+FAQWAAAAGVDQR LRKR+NHG +CKDKMIKSNIRLVISIA
Sbjct: 288  LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347

Query: 241  KNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIR 62
            KNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIR
Sbjct: 348  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407

Query: 61   LPFHMVEATYKVKEARKQLY 2
            LPFHMVEATY+VKEARKQLY
Sbjct: 408  LPFHMVEATYRVKEARKQLY 427


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  368 bits (945), Expect = 3e-99
 Identities = 209/379 (55%), Positives = 248/379 (65%), Gaps = 7/379 (1%)
 Frame = -3

Query: 1117 LEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTARLFIEDEAVITSXXXXXX 938
            +EKLRLP +E++SNA+ A  + +    +G  +E    T+L       DEAVI +      
Sbjct: 7    VEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASAEAV 66

Query: 937  XXXXXXXXXXXXXXXXXASSQSTKPVSQ-CEGQSLDSNGARLLEGGQLGTQRYLESAGTS 761
                                 S KP S+     S D+N +      QL  +      G S
Sbjct: 67   ALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMW---AQLTERERASIIGDS 123

Query: 760  V------RKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXX 599
            V       + Y    P+++S D+EPT +          +SIAVRS RQ            
Sbjct: 124  VIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAE 183

Query: 598  XXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLL 419
              A NV+ VK  S SRRKR +VQ+VDYSDPLRYLR TTSSSR+LTA+EE++ SAGIQDLL
Sbjct: 184  KAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL 243

Query: 418  KLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAK 239
            KLE L + L E+ GG P+FAQWAAAAGVDQR LR+RLN+G++CKDKMI SNIRLVISIAK
Sbjct: 244  KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 303

Query: 238  NYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 59
            NYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 304  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 363

Query: 58   PFHMVEATYKVKEARKQLY 2
            PFHMVEATY+VKEARKQLY
Sbjct: 364  PFHMVEATYRVKEARKQLY 382


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
            gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
            [Populus trichocarpa]
          Length = 567

 Score =  367 bits (942), Expect = 7e-99
 Identities = 220/442 (49%), Positives = 266/442 (60%), Gaps = 7/442 (1%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSIS--RVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXX 1133
            M+CLLP  KCQPDTFS+    + H                      PQC +         
Sbjct: 1    MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQL--------------PQCVLSSASPSTAV 46

Query: 1132 ADTAILEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTARLFI-EDEAVITS 956
             D   LEKLRLP +E +S++I A    + +  +G   +  F T+L A   I  DEAVI +
Sbjct: 47   LD---LEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAA 103

Query: 955  XXXXXXXXXXXXXXXXXXXXXXXAS----SQSTKPVSQCEGQSLDSNGARLLEGGQLGTQ 788
                                    +     + TK        S  S  + L E  +    
Sbjct: 104  AAAEAVALARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKERADII 163

Query: 787  RYLESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXX 608
                SA T +R+ Y    P  E D +EPT++          E IAVRS RQ         
Sbjct: 164  GDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRAR 223

Query: 607  XXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQ 428
                 A NVV VK  S S++KR  +Q+VD SDPLR+ RG +SSSR+L+A+EE+E S GIQ
Sbjct: 224  AAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQ 283

Query: 427  DLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVIS 248
            DLLKLE + +EL+E+ GGEPSFAQWAAAAGVDQ  LRKRLN+G++CKDKMIKSN+RLVIS
Sbjct: 284  DLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVIS 343

Query: 247  IAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRT 68
            IAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK LSD+SRT
Sbjct: 344  IAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRT 403

Query: 67   IRLPFHMVEATYKVKEARKQLY 2
            IRLPFHMV+ATY+VKEARKQLY
Sbjct: 404  IRLPFHMVDATYRVKEARKQLY 425


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  358 bits (920), Expect = 2e-96
 Identities = 216/449 (48%), Positives = 263/449 (58%), Gaps = 15/449 (3%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSI-----SRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXX 1142
            M+CLLP  KC P+TFSI     +   H          S  + RD    R QC +      
Sbjct: 1    MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 1141 XXXADTAILE--KLRLPYVESNSNAIPA--------FVRSSCLTTLGSPSEAKFDTALTA 992
                    L+  +L+LP  ++N++++           V SS  +TL +  EA    A   
Sbjct: 61   TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 991  RLFIEDEAVITSXXXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLL 812
             + +   AV  +                        S   TK  S  +  +L    A+ +
Sbjct: 121  AVTLAKAAVKVARDAALLANNINS------------SRAGTKSQSSPKPDALHFKWAQFM 168

Query: 811  EGGQLGTQRYLESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQG 632
            E  +               +G       +ESDDMEPT +          ESI V+S RQ 
Sbjct: 169  ESERADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQT 228

Query: 631  XXXXXXXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEE 452
                           +V+  K  S+SR+KR +VQ+VDYSDPLRYLR TT++SR+LTA+EE
Sbjct: 229  ERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEE 288

Query: 451  LEFSAGIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIK 272
            LE S GIQDLLKLE L +EL E+ G EP+FAQWAAAAGV+QR LRKRLN+G +CKDKMIK
Sbjct: 289  LELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIK 348

Query: 271  SNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRK 92
            SNIRLVISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRK
Sbjct: 349  SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 408

Query: 91   FLSDQSRTIRLPFHMVEATYKVKEARKQL 5
            FLSDQSRTIRLPFHMVEATY+VKEARKQL
Sbjct: 409  FLSDQSRTIRLPFHMVEATYRVKEARKQL 437


>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
          Length = 564

 Score =  352 bits (903), Expect = 2e-94
 Identities = 209/444 (47%), Positives = 262/444 (59%), Gaps = 9/444 (2%)
 Frame = -3

Query: 1306 MTCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXAD 1127
            M+CLLPH  C  DTF                  L ++R  +CF+PQC +           
Sbjct: 1    MSCLLPHFNCHLDTFRTH--------PYALPTHLSKTRPNLCFQPQCVLSATSPSTLL-- 50

Query: 1126 TAILEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITSXX 950
             ++ +KL L      + + P       +  +  P +A F + L+A  L   +EAVI +  
Sbjct: 51   -SLEKKLALDAPSDPNTSWPY------IAAVSPPLQANFKSTLSAESLLTNEEAVIVAAA 103

Query: 949  XXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGA--------RLLEGGQLG 794
                                       KP ++ E +S  S+ +        + +E  + G
Sbjct: 104  SEALALAKAAAKVAKDAALLVKK----KPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDG 159

Query: 793  TQRYLESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXX 614
                   AG  + +G   ++P  E  D+EP+ +          +SIAVRS RQ       
Sbjct: 160  VAEESMGAGAEIMEGVD-VSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKR 218

Query: 613  XXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAG 434
                     N    K  S+SRRKR ++Q+VDYSDPLRYLR TTS+SR+LT +EE++ SAG
Sbjct: 219  VRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAG 278

Query: 433  IQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLV 254
            IQDLLKLE + ++L E+ G +P+FAQWAA AGVDQ+ LRKRLN+G+ CKDKMIKSNIRLV
Sbjct: 279  IQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLV 338

Query: 253  ISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQS 74
            ISIAKNYQG GMNLQDLVQEGCRGLVKGAEKFD TKGFKFSTYAHWWIKQAVRK LSDQS
Sbjct: 339  ISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQS 398

Query: 73   RTIRLPFHMVEATYKVKEARKQLY 2
            RTIRLPFHMVEATY+VKEARKQLY
Sbjct: 399  RTIRLPFHMVEATYRVKEARKQLY 422


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  348 bits (892), Expect = 4e-93
 Identities = 199/409 (48%), Positives = 259/409 (63%), Gaps = 7/409 (1%)
 Frame = -3

Query: 1207 LFRSRDLVCFRPQCAVXXXXXXXXXADTAILEKLRLPYVESNSNAIPAFVRSSCLTTLGS 1028
            L R+R+  CF+ QC                ++K+R+P +  +S ++      + + T+GS
Sbjct: 25   LVRTREATCFQTQCVSSTATVVVD------VDKVRVPSLGGHSTSVSTHGPLTYVGTIGS 78

Query: 1027 PSEAKFDTAL-TARLFIEDEAVITSXXXXXXXXXXXXXXXXXXXXXXXAS---SQSTKPV 860
              +  F+ AL T  L   +EA+I +                        S   S+S K  
Sbjct: 79   QKKTDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDKVD 138

Query: 859  S-QCEGQSLDSNGARLLEGGQLGTQRYLESAGTSVRKGYQTLNPVSESD--DMEPTKDXX 689
                E   L    ARL E  ++G+      AG   R  ++++N +S ++  D +  ++  
Sbjct: 139  DFPSEADILRLQRARLTEMERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENIL 198

Query: 688  XXXXXXXXESIAVRSTRQGXXXXXXXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDP 509
                    + +AVRS RQ              A N + VKL + SRRKR  +Q++DYSDP
Sbjct: 199  EALQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDP 258

Query: 508  LRYLRGTTSSSRILTASEELEFSAGIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQ 329
            LRYLRGTT+S+++LTA+EELE S GIQDLLKLE LH EL E+ GGEP+F QWAAAAG+DQ
Sbjct: 259  LRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQ 318

Query: 328  RALRKRLNHGVMCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDAT 149
            +ALR+RL++G  CKDKMIKSNIRLVISIAKNYQGVG+++QDLVQEGCRGLV+GAEKFDA+
Sbjct: 319  KALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDAS 378

Query: 148  KGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYKVKEARKQLY 2
            KGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMV+ATY+V+EA KQLY
Sbjct: 379  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLY 427


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  344 bits (883), Expect = 5e-92
 Identities = 198/376 (52%), Positives = 242/376 (64%), Gaps = 5/376 (1%)
 Frame = -3

Query: 1117 LEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEA--KFDTALTARLFIEDEAVITSXXXX 944
            ++KL+LP  E+N +++      +    +G P+EA  K + +L +   I   A   +    
Sbjct: 95   IQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKPEDSLASEEAIVAAAAAEAVALA 154

Query: 943  XXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQL-GTQRYLESAG 767
                                 S +    +  E ++       L + G+  G     E  G
Sbjct: 155  KAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNG 214

Query: 766  TSVRKGYQTL--NPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXXXX 593
            + ++    +L  + +++SDD+EP+ +            IAV+S RQ              
Sbjct: 215  SEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERA 274

Query: 592  APNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLLKL 413
            A NVV VK  S SR+KR +VQDVDYSDPLRYLRGTT SSR+LTASEE E S GIQDLLKL
Sbjct: 275  AANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKL 334

Query: 412  ENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAKNY 233
            E L  EL E+ GG+P+F QWAAAAGVDQ  LRKRLN+G++CKDKMIKSN+RLVISIAKNY
Sbjct: 335  ERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNY 394

Query: 232  QGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPF 53
            QGVGMNLQDLVQEGCRGLV+GAEKFDATKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPF
Sbjct: 395  QGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 454

Query: 52   HMVEATYKVKEARKQL 5
            HMVEATY+VKEARKQL
Sbjct: 455  HMVEATYRVKEARKQL 470


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
            lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
            ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  343 bits (881), Expect = 8e-92
 Identities = 211/438 (48%), Positives = 261/438 (59%), Gaps = 4/438 (0%)
 Frame = -3

Query: 1303 TCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXADT 1124
            +CLLP  KC PD+FSI    H              ++  V F+PQCAV           T
Sbjct: 3    SCLLPQFKCPPDSFSI----HFRTSFCARK----HNKGSVFFQPQCAVSTSPALL----T 50

Query: 1123 AILE--KLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITSX 953
            ++L+  KLRLP  +++S++  +  + +   T G  +EAK+  AL +  L   DEAV+ + 
Sbjct: 51   SMLDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAA 110

Query: 952  XXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQ-CEGQSLDSNGARLLEGGQLGTQRYLE 776
                                   S+ +   +S   + +S           G LG     +
Sbjct: 111  AAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSD 170

Query: 775  SAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXXX 596
            +   S +      N  S  D     ++           S+AVRSTRQ             
Sbjct: 171  NGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEK 230

Query: 595  XAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLLK 416
             A  +  VK  SN R+KR   Q+VD++DPLRYLR TTSSS++LT  EE E SAGIQDLLK
Sbjct: 231  TASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLK 290

Query: 415  LENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAKN 236
            LE L  EL E+ G +P+FAQWA+AAGVDQ++LRKR++HG +CKDKMIKSNIRLVISIAKN
Sbjct: 291  LERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKN 350

Query: 235  YQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 56
            YQG GMNLQDLVQEGCRGLV+GAEKFDATKGFKFSTYAHWWIKQAVRK LSDQSR IRLP
Sbjct: 351  YQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLP 410

Query: 55   FHMVEATYKVKEARKQLY 2
            FHMVEATY+VKEARKQLY
Sbjct: 411  FHMVEATYRVKEARKQLY 428


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  343 bits (879), Expect = 1e-91
 Identities = 210/438 (47%), Positives = 262/438 (59%), Gaps = 4/438 (0%)
 Frame = -3

Query: 1303 TCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXADT 1124
            +CLLP  KCQPD+FSI    H             +++  V F+PQCAV           T
Sbjct: 3    SCLLPQFKCQPDSFSI----HFRTSFSVSK----QNKGPVFFQPQCAVTTSPALLT--ST 52

Query: 1123 AILEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITSXXX 947
              + KLRLP  +++S++  +  + +   T+G  +EAK+  AL +  L   DEAV+ +   
Sbjct: 53   LDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAA 112

Query: 946  XXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQLGTQRYLESAG 767
                                 S+ +   +S    +   S   +  E  + G   +L  + 
Sbjct: 113  EAVALARAAVKVAKDATLFKNSNNTNLLISSTADKR--SKWDQFTEKERAGILGHLAVSD 170

Query: 766  TSVRKGYQTLNPVSESD---DMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXXX 596
            T +     T  P S  +   D+                S+AVRSTRQ             
Sbjct: 171  TGIVSDKSTA-PASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAKGLEK 229

Query: 595  XAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLLK 416
             A  +  VK  S+ R+KR   Q+VD++DPLRYLR TTSSS++LT  EE E SAGIQDLLK
Sbjct: 230  SASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLK 289

Query: 415  LENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAKN 236
            LE L  EL E+ G +P+F+QWA+AAGVDQ++LRKR+N+G  CKDKMIKSNIRLVISIAKN
Sbjct: 290  LERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKN 349

Query: 235  YQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 56
            YQG GMNLQDLVQEGCRGLV+GAEKFDATKGFKFSTYAHWWIKQAVRK LSDQSR IRLP
Sbjct: 350  YQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLP 409

Query: 55   FHMVEATYKVKEARKQLY 2
            FHMVEATY+VKEARKQLY
Sbjct: 410  FHMVEATYRVKEARKQLY 427


>ref|XP_006307125.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575836|gb|EOA40023.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 487

 Score =  343 bits (879), Expect = 1e-91
 Identities = 210/438 (47%), Positives = 262/438 (59%), Gaps = 4/438 (0%)
 Frame = -3

Query: 1303 TCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXADT 1124
            +CLLP  KCQPD+FSI    H             +++  V F+PQCAV           T
Sbjct: 3    SCLLPQFKCQPDSFSI----HFRTSFSVSK----QNKGPVFFQPQCAVTTSPALLT--ST 52

Query: 1123 AILEKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITSXXX 947
              + KLRLP  +++S++  +  + +   T+G  +EAK+  AL +  L   DEAV+ +   
Sbjct: 53   LDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAA 112

Query: 946  XXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQLGTQRYLESAG 767
                                 S+ +   +S    +   S   +  E  + G   +L  + 
Sbjct: 113  EAVALARAAVKVAKDATLFKNSNNTNLLISSTADKR--SKWDQFTEKERAGILGHLAVSD 170

Query: 766  TSVRKGYQTLNPVSESD---DMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXXX 596
            T +     T  P S  +   D+                S+AVRSTRQ             
Sbjct: 171  TGIVSDKSTA-PASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAKGLEK 229

Query: 595  XAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLLK 416
             A  +  VK  S+ R+KR   Q+VD++DPLRYLR TTSSS++LT  EE E SAGIQDLLK
Sbjct: 230  SASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLK 289

Query: 415  LENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAKN 236
            LE L  EL E+ G +P+F+QWA+AAGVDQ++LRKR+N+G  CKDKMIKSNIRLVISIAKN
Sbjct: 290  LERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKN 349

Query: 235  YQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 56
            YQG GMNLQDLVQEGCRGLV+GAEKFDATKGFKFSTYAHWWIKQAVRK LSDQSR IRLP
Sbjct: 350  YQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLP 409

Query: 55   FHMVEATYKVKEARKQLY 2
            FHMVEATY+VKEARKQLY
Sbjct: 410  FHMVEATYRVKEARKQLY 427


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
            gi|557095448|gb|ESQ36030.1| hypothetical protein
            EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  342 bits (877), Expect = 2e-91
 Identities = 214/449 (47%), Positives = 265/449 (59%), Gaps = 15/449 (3%)
 Frame = -3

Query: 1303 TCLLPHSKCQPDTFSISRVLHXXXXXXXXXXSLFRSRDLVCFRPQCAVXXXXXXXXXADT 1124
            +CLLP  KCQPD+FSI    H              ++  V F+PQCAV           T
Sbjct: 3    SCLLPQFKCQPDSFSI----HFKTSYSLSK----HNKGSVFFQPQCAVSTSPPLL----T 50

Query: 1123 AILE--KLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKFDTALTAR-LFIEDEAVITSX 953
            ++L+  KLRLP  +++S++  +  + +   T+G  +EAK+  AL +  L   DEAV+ + 
Sbjct: 51   SMLDVAKLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAA 110

Query: 952  XXXXXXXXXXXXXXXXXXXXXXASSQSTKPVSQCEGQSLDSNGARLLEGGQLGTQRYLES 773
                                   S  +   VS    +   S   +  E  + G   +L  
Sbjct: 111  AAEAVALARAAVKVAKDATSFRNSYNTKVVVSSAADKR--SKWDQFTEKERAGILGHLAV 168

Query: 772  AGTSVRKGYQTLNPVS------------ESDDMEPTKDXXXXXXXXXXESIAVRSTRQGX 629
            + T V     T    +             S D++  K            S AVRSTRQ  
Sbjct: 169  SDTGVVSDKSTAPAPAPAPAPAPDCNNESSGDLKSEKQEVELLEEQLSVSSAVRSTRQTE 228

Query: 628  XXXXXXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTTSSSRILTASEEL 449
                        A ++  VK  S+SR+KR   Q+VD++DPLRYLR TTSSS++LTA EE 
Sbjct: 229  RKARRAKGLEKTASSMQSVKTGSSSRKKRAPSQEVDHNDPLRYLRMTTSSSKLLTAREEQ 288

Query: 448  EFSAGIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKS 269
            E S GIQDLLKLE L  EL E+ G +P+FAQWA+AAGVDQ++LRKR+N+G  CKD+MIKS
Sbjct: 289  ELSEGIQDLLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRINYGTQCKDRMIKS 348

Query: 268  NIRLVISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKF 89
            NIRLVISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDATKGFKFSTYAHWWIKQAVRK 
Sbjct: 349  NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 408

Query: 88   LSDQSRTIRLPFHMVEATYKVKEARKQLY 2
            LSDQSR IRLPFHMVEATY+VKEARKQLY
Sbjct: 409  LSDQSRMIRLPFHMVEATYRVKEARKQLY 437


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
           tuberosum]
          Length = 613

 Score =  341 bits (874), Expect = 5e-91
 Identities = 175/242 (72%), Positives = 194/242 (80%)
 Frame = -3

Query: 730 VSESDDMEPTKDXXXXXXXXXXESIAVRSTRQGXXXXXXXXXXXXXAPNVVPVKLRSNSR 551
           +++SDD+EP+ +            IAV+S RQ              A NVV VK  S SR
Sbjct: 229 LTDSDDLEPSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSR 288

Query: 550 RKRTAVQDVDYSDPLRYLRGTTSSSRILTASEELEFSAGIQDLLKLENLHDELQEKSGGE 371
           +KR +VQDVDYSDPLRYLRGTT SSR+LTASEE E S GIQDLLKLE L  EL E+ GG+
Sbjct: 289 KKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQ 348

Query: 370 PSFAQWAAAAGVDQRALRKRLNHGVMCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEG 191
           P+F QWAAAAGVDQ  LRKRLN+G++CKDKMIKSN+RLVISIAKNYQGVGMNLQDLVQEG
Sbjct: 349 PTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEG 408

Query: 190 CRGLVKGAEKFDATKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYKVKEARK 11
           CRGLV+GAEKFDATKGFKFSTYAHWWIKQAVRK LSDQSR IRLPFHMVEATY+VKEARK
Sbjct: 409 CRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARK 468

Query: 10  QL 5
           QL
Sbjct: 469 QL 470


>ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Populus trichocarpa]
            gi|550316911|gb|EEE99836.2| hypothetical protein
            POPTR_0019s06100g [Populus trichocarpa]
          Length = 555

 Score =  340 bits (873), Expect = 7e-91
 Identities = 204/401 (50%), Positives = 247/401 (61%), Gaps = 7/401 (1%)
 Frame = -3

Query: 1183 CFRPQCAVXXXXXXXXXADTAIL--EKLRLPYVESNSNAIPAFVRSSCLTTLGSPSEAKF 1010
            CFR QCA+           TA+L  EKLRLP +ES+S++I A    + +  +G P E  F
Sbjct: 16   CFRAQCALSSASPST---STAVLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLF 72

Query: 1009 DTAL-TARLFIEDEAVITSXXXXXXXXXXXXXXXXXXXXXXXAS----SQSTKPVSQCEG 845
             T+L T  L I DEAVI +                        +    +  TK       
Sbjct: 73   GTSLATETLIINDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTA 132

Query: 844  QSLDSNGARLLEGGQLGTQRYLESAGTSVRKGYQTLNPVSESDDMEPTKDXXXXXXXXXX 665
             S  S    L    +        SA T +R+   T  P  ESD   PT +          
Sbjct: 133  DSFSSMWCLLTGKERADIIGVSFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLS 192

Query: 664  ESIAVRSTRQGXXXXXXXXXXXXXAPNVVPVKLRSNSRRKRTAVQDVDYSDPLRYLRGTT 485
            ESI VRS RQ              A N V +K  S  ++KR  VQ+VD SDPLR+ RG +
Sbjct: 193  ESIVVRSKRQTQRKAKRARAAEKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGAS 252

Query: 484  SSSRILTASEELEFSAGIQDLLKLENLHDELQEKSGGEPSFAQWAAAAGVDQRALRKRLN 305
            +SSR+L+A+EE+E S GIQDLLKLE + +EL+E+ GG+P+FAQWAAAA VDQ  LRKRLN
Sbjct: 253  TSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLN 312

Query: 304  HGVMCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCRGLVKGAEKFDATKGFKFSTY 125
            + ++CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLV+G EKFDA+KGFKFSTY
Sbjct: 313  YAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTY 372

Query: 124  AHWWIKQAVRKFLSDQSRTIRLPFHMVEATYKVKEARKQLY 2
            AHWWI+QAVR+ LSDQSRTIRLPFHMV+ATY+VKEARKQ Y
Sbjct: 373  AHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFY 413